Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1467010 | KEH38601.1 | 99.213 | 127 | 1 | 0 | 1 | 127 | 38 | 164 | 1.42e-86 | 259 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1467010 | sp|P16273|PRPX_HORVU | 49.565 | 115 | 56 | 1 | 1 | 113 | 103 | 217 | 1.44e-32 | 117 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1467010 | A0A072VAF8 | 99.213 | 127 | 1 | 0 | 1 | 127 | 38 | 164 | 6.77e-87 | 259 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1348950 | Msa1467010 | 0.821766 | 3.391042e-53 | -8.615850e-47 |
Msa0323610 | Msa1467010 | 0.802553 | 5.312323e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1467010 | MtrunA17_Chr2g0315561 | 99.213 | 127 | 1 | 0 | 1 | 127 | 101 | 227 | 7.85e-90 | 259 |
Msa1467010 | MtrunA17_Chr2g0315601 | 89.764 | 127 | 13 | 0 | 1 | 127 | 101 | 227 | 7.69e-83 | 242 |
Msa1467010 | MtrunA17_Chr8g0359751 | 73.282 | 131 | 30 | 2 | 1 | 126 | 106 | 236 | 5.44e-67 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1467010 | AT1G78780.1 | 64.748 | 139 | 37 | 2 | 1 | 127 | 38 | 176 | 3.28e-62 | 188 |
Msa1467010 | AT1G78780.4 | 64.748 | 139 | 37 | 2 | 1 | 127 | 97 | 235 | 1.21e-61 | 189 |
Msa1467010 | AT1G78780.2 | 64.748 | 139 | 37 | 2 | 1 | 127 | 100 | 238 | 1.34e-61 | 189 |
Msa1467010 | AT1G78780.3 | 64.748 | 139 | 37 | 2 | 1 | 127 | 114 | 252 | 2.21e-61 | 189 |
Msa1467010 | AT1G78780.5 | 64.748 | 139 | 37 | 2 | 1 | 127 | 114 | 252 | 2.21e-61 | 189 |
Find 21 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | tig0049574:-836 | Msa1467010:CDS |
CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | tig0049574:+820 | Msa1467010:intergenic |
TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | tig0049574:-829 | Msa1467010:CDS |
GGGAAGATGGTCCAATTCTT+TGG | 0.327141 | tig0049574:-768 | Msa1467010:CDS |
GATGGTCCAATTCTTTGGTC+TGG | 0.350753 | tig0049574:-763 | Msa1467010:CDS |
TTCAAGGGACATTCCCCTAC+TGG | 0.422890 | tig0049574:-789 | Msa1467010:CDS |
GAGTTCCCAGACCAAAGAAT+TGG | 0.426282 | tig0049574:+740 | Msa1467010:intergenic |
ACTTCCCATGCAAACCCTCT+TGG | 0.426714 | tig0049574:+865 | Msa1467010:intergenic |
ATGGTCCAATTCTTTGGTCT+GGG | 0.454410 | tig0049574:-762 | Msa1467010:CDS |
GTCTCTTCATTTGACTTGTA+CGG | 0.456033 | tig0049574:+925 | Msa1467010:intergenic |
GAAGTGATTAAAGTTTATAC+AGG | 0.461844 | tig0049574:-864 | Msa1467010:CDS |
TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | tig0049574:-830 | Msa1467010:CDS |
ACATTCCCCTACTGGGAAGA+TGG | 0.513266 | tig0049574:-781 | Msa1467010:CDS |
CTTTGGTCTGGGAACTCTCA+AGG | 0.519446 | tig0049574:-751 | Msa1467010:CDS |
TCAAGGGACATTCCCCTACT+GGG | 0.534157 | tig0049574:-788 | Msa1467010:CDS |
ATTGGACCATCTTCCCAGTA+GGG | 0.563870 | tig0049574:+758 | Msa1467010:intergenic |
AATTGGACCATCTTCCCAGT+AGG | 0.580984 | tig0049574:+757 | Msa1467010:intergenic |
GTAGGGGAATGTCCCTTGAA+AGG | 0.591507 | tig0049574:+775 | Msa1467010:intergenic |
GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | tig0049574:-828 | Msa1467010:CDS |
AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | tig0049574:+823 | Msa1467000:intergenic |
TTGGACCATCTTCCCAGTAG+GGG | 0.659212 | tig0049574:+759 | Msa1467000:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATCACTAATTAAAA+TGG | - | tig0049574:467-486 | Msa1467010:intron | 10.0% |
!! | TATATAAAATCTATTATTGA+GGG | + | tig0049574:680-699 | Msa1467010:intergenic | 10.0% |
!! | ATATATAAAATCTATTATTG+AGG | + | tig0049574:681-700 | Msa1467010:intergenic | 10.0% |
!! | AAAATTATCACTAATTAAAA+TGG | - | tig0049574:467-486 | Msa1467010:intron | 10.0% |
!! | TATATAAAATCTATTATTGA+GGG | + | tig0049574:680-699 | Msa1467010:intergenic | 10.0% |
!! | ATATATAAAATCTATTATTG+AGG | + | tig0049574:681-700 | Msa1467010:intergenic | 10.0% |
!!! | ATGAAAAATTTGTTTTTATC+AGG | + | tig0049574:347-366 | Msa1467010:intergenic | 15.0% |
!!! | ATTTTACACTTTTTTTTTGA+AGG | - | tig0049574:501-520 | Msa1467010:intron | 15.0% |
!! | AAATAAAAACTCATAAAGTA+GGG | + | tig0049574:757-776 | Msa1467010:intergenic | 15.0% |
!!! | TGATCAATATTTTTTAACAT+AGG | - | tig0049574:857-876 | Msa1467010:CDS | 15.0% |
!!! | ATGAAAAATTTGTTTTTATC+AGG | + | tig0049574:347-366 | Msa1467010:intergenic | 15.0% |
!!! | ATTTTACACTTTTTTTTTGA+AGG | - | tig0049574:501-520 | Msa1467010:intron | 15.0% |
!! | AAATAAAAACTCATAAAGTA+GGG | + | tig0049574:757-776 | Msa1467010:intergenic | 15.0% |
!!! | TGATCAATATTTTTTAACAT+AGG | - | tig0049574:857-876 | Msa1467010:CDS | 15.0% |
!! | TGCTCTTAAAAAAATGTATA+TGG | + | tig0049574:389-408 | Msa1467010:intergenic | 20.0% |
!!! | ATGTCTAATGATATTTTTAG+AGG | - | tig0049574:614-633 | Msa1467010:intron | 20.0% |
!! | GAAATAAAAACTCATAAAGT+AGG | + | tig0049574:758-777 | Msa1467010:intergenic | 20.0% |
!!! | TCAATATTTTTTAACATAGG+TGG | - | tig0049574:860-879 | Msa1467010:CDS | 20.0% |
!! | TGCTCTTAAAAAAATGTATA+TGG | + | tig0049574:389-408 | Msa1467010:intergenic | 20.0% |
!!! | ATGTCTAATGATATTTTTAG+AGG | - | tig0049574:614-633 | Msa1467010:intron | 20.0% |
!! | GAAATAAAAACTCATAAAGT+AGG | + | tig0049574:758-777 | Msa1467010:intergenic | 20.0% |
!!! | TCAATATTTTTTAACATAGG+TGG | - | tig0049574:860-879 | Msa1467010:CDS | 20.0% |
! | GAAGTGATTAAAGTTTATAC+AGG | - | tig0049574:131-150 | Msa1467010:intron | 25.0% |
!! | ATCAGGAATTCTTAAACTTT+TGG | + | tig0049574:330-349 | Msa1467010:intergenic | 25.0% |
!!! | TCTAATGATATTTTTAGAGG+AGG | - | tig0049574:617-636 | Msa1467010:intron | 25.0% |
!! | TTTTATCACCCTTTACATTT+TGG | - | tig0049574:799-818 | Msa1467010:CDS | 25.0% |
!! | TTTATCACCCTTTACATTTT+GGG | - | tig0049574:800-819 | Msa1467010:CDS | 25.0% |
! | ATCAAATCCCAAAATGTAAA+GGG | + | tig0049574:810-829 | Msa1467010:intergenic | 25.0% |
! | TATCAAATCCCAAAATGTAA+AGG | + | tig0049574:811-830 | Msa1467010:intergenic | 25.0% |
! | GAAGTGATTAAAGTTTATAC+AGG | - | tig0049574:131-150 | Msa1467010:intron | 25.0% |
!! | ATCAGGAATTCTTAAACTTT+TGG | + | tig0049574:330-349 | Msa1467010:intergenic | 25.0% |
!!! | TCTAATGATATTTTTAGAGG+AGG | - | tig0049574:617-636 | Msa1467010:intron | 25.0% |
!! | TTTTATCACCCTTTACATTT+TGG | - | tig0049574:799-818 | Msa1467010:CDS | 25.0% |
!! | TTTATCACCCTTTACATTTT+GGG | - | tig0049574:800-819 | Msa1467010:CDS | 25.0% |
! | ATCAAATCCCAAAATGTAAA+GGG | + | tig0049574:810-829 | Msa1467010:intergenic | 25.0% |
! | TATCAAATCCCAAAATGTAA+AGG | + | tig0049574:811-830 | Msa1467010:intergenic | 25.0% |
CTAAACTTGAAAGCAATTTC+AGG | + | tig0049574:161-180 | Msa1467010:intergenic | 30.0% | |
!! | CTGAAATTGCTTTCAAGTTT+AGG | - | tig0049574:159-178 | Msa1467010:intron | 30.0% |
! | TTGAGGGATTTAGATTTTGA+TGG | + | tig0049574:664-683 | Msa1467010:intergenic | 30.0% |
ACTCATAAAGTAGGGTAAAA+TGG | + | tig0049574:749-768 | Msa1467010:intergenic | 30.0% | |
AAAAGGACAAGCTGAAATTT+GGG | + | tig0049574:970-989 | Msa1467010:intergenic | 30.0% | |
AAAAAGGACAAGCTGAAATT+TGG | + | tig0049574:971-990 | Msa1467010:intergenic | 30.0% | |
CTAAACTTGAAAGCAATTTC+AGG | + | tig0049574:161-180 | Msa1467010:intergenic | 30.0% | |
!! | CTGAAATTGCTTTCAAGTTT+AGG | - | tig0049574:159-178 | Msa1467010:intron | 30.0% |
! | TTGAGGGATTTAGATTTTGA+TGG | + | tig0049574:664-683 | Msa1467010:intergenic | 30.0% |
ACTCATAAAGTAGGGTAAAA+TGG | + | tig0049574:749-768 | Msa1467010:intergenic | 30.0% | |
AAAAGGACAAGCTGAAATTT+GGG | + | tig0049574:970-989 | Msa1467010:intergenic | 30.0% | |
AAAAAGGACAAGCTGAAATT+TGG | + | tig0049574:971-990 | Msa1467010:intergenic | 30.0% | |
! | TTGTACGGCTTGAAATTTTC+TGG | + | tig0049574:41-60 | Msa0565270:intergenic | 35.0% |
!! | GTCTCTTCATTTGACTTGTA+CGG | + | tig0049574:56-75 | Msa0565270:intergenic | 35.0% |
! | TTCAAATCAGCTTTTCCAAG+AGG | - | tig0049574:98-117 | Msa1467010:CDS | 35.0% |
! | TCAAATCAGCTTTTCCAAGA+GGG | - | tig0049574:99-118 | Msa1467010:CDS | 35.0% |
AACTTGAAAGCAATTTCAGG+TGG | + | tig0049574:158-177 | Msa1467010:intergenic | 35.0% | |
!! | TTGCTTTCAAGTTTAGGCAT+TGG | - | tig0049574:165-184 | Msa1467010:intron | 35.0% |
!! | TGCTTTCAAGTTTAGGCATT+GGG | - | tig0049574:166-185 | Msa1467010:intron | 35.0% |
!! | ATTTTTCGAAGGTCCTTTCA+AGG | - | tig0049574:190-209 | Msa1467010:intron | 35.0% |
!! | TTTTTCGAAGGTCCTTTCAA+GGG | - | tig0049574:191-210 | Msa1467010:intron | 35.0% |
!! | ATTTGAGTTTTGTCACCTTG+AGG | - | tig0049574:553-572 | Msa1467010:intron | 35.0% |
ATGAAGTGTGAACTACTTAG+AGG | + | tig0049574:585-604 | Msa1467010:intergenic | 35.0% | |
TCTAAGTAGTTCACACTTCA+TGG | - | tig0049574:584-603 | Msa1467010:intron | 35.0% | |
! | TTGTACGGCTTGAAATTTTC+TGG | + | tig0049574:41-60 | Msa1467010:intergenic | 35.0% |
!! | GTCTCTTCATTTGACTTGTA+CGG | + | tig0049574:56-75 | Msa1467010:intergenic | 35.0% |
! | TTCAAATCAGCTTTTCCAAG+AGG | - | tig0049574:98-117 | Msa1467010:CDS | 35.0% |
! | TCAAATCAGCTTTTCCAAGA+GGG | - | tig0049574:99-118 | Msa1467010:CDS | 35.0% |
AACTTGAAAGCAATTTCAGG+TGG | + | tig0049574:158-177 | Msa1467010:intergenic | 35.0% | |
!! | TTGCTTTCAAGTTTAGGCAT+TGG | - | tig0049574:165-184 | Msa1467010:intron | 35.0% |
!! | TGCTTTCAAGTTTAGGCATT+GGG | - | tig0049574:166-185 | Msa1467010:intron | 35.0% |
!! | ATTTTTCGAAGGTCCTTTCA+AGG | - | tig0049574:190-209 | Msa1467010:intron | 35.0% |
!! | TTTTTCGAAGGTCCTTTCAA+GGG | - | tig0049574:191-210 | Msa1467010:intron | 35.0% |
!! | ATTTGAGTTTTGTCACCTTG+AGG | - | tig0049574:553-572 | Msa1467010:intron | 35.0% |
ATGAAGTGTGAACTACTTAG+AGG | + | tig0049574:585-604 | Msa1467010:intergenic | 35.0% | |
TCTAAGTAGTTCACACTTCA+TGG | - | tig0049574:584-603 | Msa1467010:intron | 35.0% | |
! | TTTTCCAAGAGGGTTTGCAT+GGG | - | tig0049574:109-128 | Msa1467010:intron | 40.0% |
!! | GCTTTCAAGTTTAGGCATTG+GGG | - | tig0049574:167-186 | Msa1467010:intron | 40.0% |
ATGGTCCAATTCTTTGGTCT+GGG | - | tig0049574:233-252 | Msa1467010:intron | 40.0% | |
ATAGGTGGATGATGCTTTGA+AGG | - | tig0049574:875-894 | Msa1467010:CDS | 40.0% | |
!! | TGATGCTTTGAAGGTTGAAG+AGG | - | tig0049574:884-903 | Msa1467010:CDS | 40.0% |
! | TGCTATCTCCACTTGTTAGA+AGG | + | tig0049574:947-966 | Msa1467010:intergenic | 40.0% |
! | TTTTCCAAGAGGGTTTGCAT+GGG | - | tig0049574:109-128 | Msa1467010:intron | 40.0% |
!! | GCTTTCAAGTTTAGGCATTG+GGG | - | tig0049574:167-186 | Msa1467010:intron | 40.0% |
ATGGTCCAATTCTTTGGTCT+GGG | - | tig0049574:233-252 | Msa1467010:intron | 40.0% | |
ATAGGTGGATGATGCTTTGA+AGG | - | tig0049574:875-894 | Msa1467010:CDS | 40.0% | |
!! | TGATGCTTTGAAGGTTGAAG+AGG | - | tig0049574:884-903 | Msa1467010:CDS | 40.0% |
! | TGCTATCTCCACTTGTTAGA+AGG | + | tig0049574:947-966 | Msa1467010:intergenic | 40.0% |
! | CTTTTCCAAGAGGGTTTGCA+TGG | - | tig0049574:108-127 | Msa1467010:intron | 45.0% |
!!! | AGGCATTGGGGATTTTTCGA+AGG | - | tig0049574:179-198 | Msa1467010:intron | 45.0% |
ATTGGACCATCTTCCCAGTA+GGG | + | tig0049574:223-242 | Msa1467010:intergenic | 45.0% | |
AATTGGACCATCTTCCCAGT+AGG | + | tig0049574:224-243 | Msa1467010:intergenic | 45.0% | |
GGGAAGATGGTCCAATTCTT+TGG | - | tig0049574:227-246 | Msa1467010:intron | 45.0% | |
GATGGTCCAATTCTTTGGTC+TGG | - | tig0049574:232-251 | Msa1467010:intron | 45.0% | |
GAGTTCCCAGACCAAAGAAT+TGG | + | tig0049574:241-260 | Msa1467010:intergenic | 45.0% | |
!! | ACTTAGAGGTGTTGACCTCA+AGG | + | tig0049574:571-590 | Msa1467010:intergenic | 45.0% |
! | CTTTTCCAAGAGGGTTTGCA+TGG | - | tig0049574:108-127 | Msa1467010:intron | 45.0% |
!!! | AGGCATTGGGGATTTTTCGA+AGG | - | tig0049574:179-198 | Msa1467010:intron | 45.0% |
ATTGGACCATCTTCCCAGTA+GGG | + | tig0049574:223-242 | Msa1467010:intergenic | 45.0% | |
AATTGGACCATCTTCCCAGT+AGG | + | tig0049574:224-243 | Msa1467010:intergenic | 45.0% | |
GGGAAGATGGTCCAATTCTT+TGG | - | tig0049574:227-246 | Msa1467010:intron | 45.0% | |
GATGGTCCAATTCTTTGGTC+TGG | - | tig0049574:232-251 | Msa1467010:intron | 45.0% | |
GAGTTCCCAGACCAAAGAAT+TGG | + | tig0049574:241-260 | Msa1467010:intergenic | 45.0% | |
!! | ACTTAGAGGTGTTGACCTCA+AGG | + | tig0049574:571-590 | Msa1467010:intergenic | 45.0% |
ACTTCCCATGCAAACCCTCT+TGG | + | tig0049574:116-135 | Msa1467010:intergenic | 50.0% | |
GTAGGGGAATGTCCCTTGAA+AGG | + | tig0049574:206-225 | Msa1467010:intergenic | 50.0% | |
TTCAAGGGACATTCCCCTAC+TGG | - | tig0049574:206-225 | Msa1467010:intron | 50.0% | |
TCAAGGGACATTCCCCTACT+GGG | - | tig0049574:207-226 | Msa1467010:intron | 50.0% | |
ACATTCCCCTACTGGGAAGA+TGG | - | tig0049574:214-233 | Msa1467010:intron | 50.0% | |
TTGGACCATCTTCCCAGTAG+GGG | + | tig0049574:222-241 | Msa1467010:intergenic | 50.0% | |
CTTTGGTCTGGGAACTCTCA+AGG | - | tig0049574:244-263 | Msa1467010:intron | 50.0% | |
TATGACCCAGCAGAGTTGCT+TGG | - | tig0049574:918-937 | Msa1467010:CDS | 50.0% | |
CTTGGAGGCCTTCTAACAAG+TGG | - | tig0049574:936-955 | Msa1467010:CDS | 50.0% | |
ACTTCCCATGCAAACCCTCT+TGG | + | tig0049574:116-135 | Msa1467010:intergenic | 50.0% | |
GTAGGGGAATGTCCCTTGAA+AGG | + | tig0049574:206-225 | Msa1467010:intergenic | 50.0% | |
TTCAAGGGACATTCCCCTAC+TGG | - | tig0049574:206-225 | Msa1467010:intron | 50.0% | |
TCAAGGGACATTCCCCTACT+GGG | - | tig0049574:207-226 | Msa1467010:intron | 50.0% | |
ACATTCCCCTACTGGGAAGA+TGG | - | tig0049574:214-233 | Msa1467010:intron | 50.0% | |
TTGGACCATCTTCCCAGTAG+GGG | + | tig0049574:222-241 | Msa1467010:intergenic | 50.0% | |
CTTTGGTCTGGGAACTCTCA+AGG | - | tig0049574:244-263 | Msa1467010:intron | 50.0% | |
TATGACCCAGCAGAGTTGCT+TGG | - | tig0049574:918-937 | Msa1467010:CDS | 50.0% | |
CTTGGAGGCCTTCTAACAAG+TGG | - | tig0049574:936-955 | Msa1467010:CDS | 50.0% | |
GACCCAGCAGAGTTGCTTGG+AGG | - | tig0049574:921-940 | Msa1467010:CDS | 60.0% | |
GGCCTCCAAGCAACTCTGCT+GGG | + | tig0049574:926-945 | Msa1467010:intergenic | 60.0% | |
AGGCCTCCAAGCAACTCTGC+TGG | + | tig0049574:927-946 | Msa1467010:intergenic | 60.0% | |
GACCCAGCAGAGTTGCTTGG+AGG | - | tig0049574:921-940 | Msa1467010:CDS | 60.0% | |
GGCCTCCAAGCAACTCTGCT+GGG | + | tig0049574:926-945 | Msa1467010:intergenic | 60.0% | |
AGGCCTCCAAGCAACTCTGC+TGG | + | tig0049574:927-946 | Msa1467010:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0049574 | gene | 2 | 998 | 2 | ID=Msa1467010;Name=Msa1467010 |
tig0049574 | mRNA | 2 | 998 | 2 | ID=Msa1467010-mRNA-1;Parent=Msa1467010;Name=Msa1467010-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|127 |
tig0049574 | exon | 735 | 998 | 735 | ID=Msa1467010-mRNA-1:exon:25183;Parent=Msa1467010-mRNA-1 |
tig0049574 | exon | 2 | 121 | 2 | ID=Msa1467010-mRNA-1:exon:25182;Parent=Msa1467010-mRNA-1 |
tig0049574 | CDS | 735 | 998 | 735 | ID=Msa1467010-mRNA-1:cds;Parent=Msa1467010-mRNA-1 |
tig0049574 | CDS | 2 | 121 | 2 | ID=Msa1467010-mRNA-1:cds;Parent=Msa1467010-mRNA-1 |
Gene Sequence |
Protein sequence |