AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323610 MtrunA17_Chr2g0300841 94.444 360 20 0 1 360 1 360 0.0 684
Msa0323610 MtrunA17_Chr2g0300851 89.802 353 32 2 8 360 4 352 0.0 652
Msa0323610 MtrunA17_Chr2g0300861 84.986 353 52 1 8 360 20 371 0.0 612
Msa0323610 MtrunA17_Chr8g0370791 33.146 356 221 11 10 358 22 367 7.59e-57 189
Msa0323610 MtrunA17_Chr8g0370761 32.471 348 222 9 10 352 22 361 1.58e-52 178
Msa0323610 MtrunA17_Chr8g0370771 31.780 236 155 3 123 358 3 232 6.67e-38 136
Msa0323610 MtrunA17_Chr2g0329531 30.769 286 181 7 84 356 124 405 2.83e-35 133
Msa0323610 MtrunA17_Chr4g0025341 32.090 268 170 6 98 357 128 391 3.64e-35 132
Msa0323610 MtrunA17_Chr7g0256591 32.016 253 157 6 114 355 136 384 3.19e-31 122
Msa0323610 MtrunA17_Chr2g0322241 31.349 252 165 7 112 357 146 395 1.07e-30 120
Msa0323610 MtrunA17_Chr7g0256581 28.382 377 226 12 10 357 8 369 1.87e-30 119
Msa0323610 MtrunA17_Chr7g0256601 31.225 253 159 6 114 355 167 415 1.10e-29 118
Msa0323610 MtrunA17_Chr7g0256571 27.273 385 236 13 1 357 1 369 1.28e-29 117
Msa0323610 MtrunA17_Chr7g0256561 31.048 248 132 5 112 357 125 335 5.24e-26 106
Msa0323610 MtrunA17_Chr4g0062001 32.275 189 118 4 112 291 110 297 9.78e-24 100
Msa0323610 MtrunA17_Chr5g0443561 28.866 291 157 7 77 357 73 323 2.02e-23 99.0
Msa0323610 MtrunA17_Chr8g0376581 30.488 246 138 9 51 268 25 265 1.15e-21 94.4
Msa0323610 MtrunA17_Chr4g0020271 32.727 165 96 4 147 303 1 158 8.65e-20 86.7
Msa0323610 MtrunA17_Chr8g0370801 33.333 105 66 1 124 224 3 107 3.60e-19 82.0
Msa0323610 MtrunA17_Chr4g0062031 29.412 238 135 8 65 272 39 273 3.78e-19 87.0
Msa0323610 MtrunA17_Chr4g0062021 29.237 236 135 7 62 268 49 281 2.04e-18 85.5
Msa0323610 MtrunA17_Chr2g0307721 33.962 159 99 5 114 268 120 276 2.73e-18 86.7
Msa0323610 MtrunA17_Chr2g0307721 33.758 157 98 5 116 268 574 728 4.04e-15 77.0
Msa0323610 MtrunA17_Chr4g0061871 39.286 84 50 1 185 268 31 113 3.78e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323610 AT3G51430.1 30.769 351 222 9 19 357 20 361 1.21e-49 171
Msa0323610 AT3G51430.2 31.180 356 212 9 19 357 20 359 1.53e-49 170
Msa0323610 AT3G51420.1 29.722 360 230 10 10 357 13 361 3.80e-49 169
Msa0323610 AT3G51440.1 31.063 367 209 12 19 359 20 368 1.73e-47 165
Msa0323610 AT3G51450.1 29.268 369 234 12 5 357 4 361 2.08e-42 152
Msa0323610 AT3G59530.3 26.992 389 229 13 11 356 20 396 1.16e-34 132
Msa0323610 AT3G59530.2 26.992 389 229 13 11 356 20 396 1.16e-34 132
Msa0323610 AT3G59530.1 26.992 389 229 13 11 356 20 396 1.16e-34 132
Msa0323610 AT3G57030.1 32.143 252 164 4 112 357 124 374 1.12e-33 128
Msa0323610 AT5G22020.3 27.717 368 210 9 29 357 45 395 5.75e-33 127
Msa0323610 AT5G22020.1 27.717 368 210 9 29 357 45 395 5.75e-33 127
Msa0323610 AT5G22020.2 27.717 368 210 9 29 357 45 395 5.75e-33 127
Msa0323610 AT1G08470.1 29.771 262 156 5 112 357 140 389 1.80e-32 125
Msa0323610 AT3G57020.2 29.932 294 193 10 65 347 54 345 5.62e-30 118
Msa0323610 AT3G57020.1 31.076 251 162 8 106 347 111 359 2.50e-28 114
Msa0323610 AT3G57010.1 29.918 244 161 8 112 347 119 360 1.99e-27 111
Msa0323610 AT2G41300.1 29.762 252 163 7 106 347 136 383 9.70e-27 110
Msa0323610 AT2G41290.1 29.699 266 171 8 106 357 113 376 3.83e-25 105
Msa0323610 AT1G74010.1 26.603 312 178 8 65 353 38 321 3.40e-21 93.2
Msa0323610 AT1G74000.1 24.601 313 184 11 65 353 41 325 1.03e-16 80.5
Msa0323610 AT1G74020.1 25.781 256 147 8 112 358 107 328 2.34e-16 79.7

Find 84 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTGTGCATACCAAATT+TGG 0.147851 2_4:-27858635 None:intergenic
GTTTGAGGACCATCTTTATT+TGG 0.176183 2_4:+27859617 Msa0323610:CDS
GAATGGTTAGAAATGGAAAT+TGG 0.206093 2_4:+27854616 Msa0323610:CDS
TTCCAGTGTAATTGGATCTA+TGG 0.223832 2_4:-27854357 None:intergenic
GAAGGAATTTCCAGTGTAAT+TGG 0.239320 2_4:-27854365 None:intergenic
ACATACAAGATGATTTATTA+TGG 0.248921 2_4:-27859739 None:intergenic
TGTCTTAAACATTGGCTAAA+AGG 0.251320 2_4:+27858948 Msa0323610:CDS
CGTTATTGTCCTTGATGATT+TGG 0.257134 2_4:+27858726 Msa0323610:CDS
GTTATCCTTTCACAAGTAAA+TGG 0.270520 2_4:+27854861 Msa0323610:CDS
ATAAATCATCTTGTATGTTT+TGG 0.278440 2_4:+27859744 Msa0323610:three_prime_UTR
GATGTATTTAGTTCAAATTT+TGG 0.286614 2_4:+27854144 Msa0323610:five_prime_UTR
TGCACCATCAATGTATTAAA+AGG 0.289818 2_4:-27859705 None:intergenic
AAGAAGATAATCTTCATCTT+TGG 0.295637 2_4:-27858773 None:intergenic
GAAATGGAAATTGGGAGAAT+TGG 0.304056 2_4:+27854625 Msa0323610:CDS
TTGCTCCTGATGGCTCATTC+TGG 0.309987 2_4:+27859036 Msa0323610:CDS
AGTGTTCCAAGTACCAAATT+TGG 0.315709 2_4:+27858622 Msa0323610:CDS
GACAATGAGACCACCATCTT+TGG 0.326566 2_4:-27854688 None:intergenic
CCAAATTTGGTATGCACAAT+TGG 0.339387 2_4:+27858635 Msa0323610:CDS
CAAGTGCTTTGATACCTTAG+AGG 0.352899 2_4:-27859448 None:intergenic
TGCATACCAAATTTGGTACT+TGG 0.353785 2_4:-27858628 None:intergenic
TTATCCACACAAACATCTTC+GGG 0.358260 2_4:-27854549 None:intergenic
AACTTCAGCTATTGAGTTTG+AGG 0.365143 2_4:+27859602 Msa0323610:CDS
ATAACGGTTTCATTTGAGAT+AGG 0.374769 2_4:-27858709 None:intergenic
ATTCTGGATCGCTTTAATTC+AGG 0.374953 2_4:+27859052 Msa0323610:CDS
TTTGAGGACCATCTTTATTT+GGG 0.375520 2_4:+27859618 Msa0323610:CDS
GGGATTTGTGCACACCTCTA+AGG 0.385910 2_4:+27859434 Msa0323610:CDS
TGGTATGCACAATTGGTATC+TGG 0.390581 2_4:+27858642 Msa0323610:CDS
TTTATCCACACAAACATCTT+CGG 0.391126 2_4:-27854550 None:intergenic
AAAAGTTTGGTGATAATAAT+GGG 0.393430 2_4:+27859562 Msa0323610:CDS
ATAGATAGCACTTCTTTGCT+TGG 0.400675 2_4:+27854654 Msa0323610:CDS
GGTTTAGGTGTCTTAAACAT+TGG 0.404523 2_4:+27858940 Msa0323610:intron
GGAGCAAGATTAATGTTATC+AGG 0.407899 2_4:-27859020 None:intergenic
AATGGTTAGAAATGGAAATT+GGG 0.411141 2_4:+27854617 Msa0323610:CDS
CTGATCAAATTAATTAGCCT+TGG 0.413752 2_4:-27859483 None:intergenic
TAATAAACACATGATTGCTT+AGG 0.417229 2_4:+27859841 Msa0323610:three_prime_UTR
ATCTTCTTGTCTGCGAAACT+TGG 0.421361 2_4:+27858788 Msa0323610:CDS
ATTAAAAGAATGGTTAGAAA+TGG 0.423103 2_4:+27854609 Msa0323610:CDS
CATGCTTGTTCAGTTACTCT+TGG 0.449170 2_4:-27854255 None:intergenic
AGTATTAAGACTGACTTTGT+TGG 0.459700 2_4:+27859642 Msa0323610:CDS
CTAAAGGTTACAGAAGAAGA+TGG 0.472505 2_4:+27854831 Msa0323610:CDS
TTTATTGAAAACCTTCCAGC+TGG 0.481363 2_4:+27858996 Msa0323610:CDS
TCCAGTGTAATTGGATCTAT+GGG 0.482722 2_4:-27854356 None:intergenic
AACATTAATCTTGCTCCTGA+TGG 0.489893 2_4:+27859026 Msa0323610:CDS
GAGAACCATTTACTTGTGAA+AGG 0.496653 2_4:-27854866 None:intergenic
AGATGGATGGATTAAAAGAA+TGG 0.501826 2_4:+27854599 Msa0323610:CDS
GCGATCCAGAATGAGCCATC+AGG 0.509038 2_4:-27859041 None:intergenic
GATGATTTGGCCTTTGCCAA+TGG 0.513304 2_4:+27858739 Msa0323610:CDS
TAGTTCTATGCACTTTGCAA+TGG 0.514585 2_4:-27859672 None:intergenic
ACTTGGTAGCTTTATTTCCA+AGG 0.521930 2_4:+27859466 Msa0323610:CDS
TAACAGAAAGTGATTAAACT+TGG 0.522162 2_4:+27854507 Msa0323610:intron
TTTGATCAAAACCTCAAGCT+TGG 0.522434 2_4:+27854286 Msa0323610:CDS
GTCTGCAATGGTGGTGAAAG+TGG 0.528163 2_4:+27859518 Msa0323610:CDS
CAAATCATCAAGGACAATAA+CGG 0.530113 2_4:-27858725 None:intergenic
TAATACTACCCAAATAAAGA+TGG 0.532342 2_4:-27859626 None:intergenic
CTCTAAGGTATCAAAGCACT+TGG 0.536582 2_4:+27859449 Msa0323610:CDS
TAGATAACTTCTGAAAGGAC+GGG 0.550060 2_4:+27859414 Msa0323610:intron
GTAGATAACTTCTGAAAGGA+CGG 0.552765 2_4:+27859413 Msa0323610:intron
TTGTATACAGCTACAAGAGA+TGG 0.552807 2_4:+27854582 Msa0323610:CDS
AAAGTGATTAAACTTGGAGA+AGG 0.557723 2_4:+27854513 Msa0323610:CDS
GAAGTTGAAGATGCAGCAGA+AGG 0.562477 2_4:-27854383 None:intergenic
AGCTGCTAGCACCAAGCTTG+AGG 0.565489 2_4:-27854297 None:intergenic
TGTTATCAGGTCCAGCTGGA+AGG 0.568452 2_4:-27859007 None:intergenic
TAACATTACTCTTCAAAATG+TGG 0.569600 2_4:-27859786 None:intergenic
TTAATGTTATCAGGTCCAGC+TGG 0.572564 2_4:-27859011 None:intergenic
TTTGGATAGAGCAACACCAT+TGG 0.580129 2_4:-27858755 None:intergenic
GGAATCACAACATCCAAAGA+TGG 0.581895 2_4:+27854675 Msa0323610:CDS
CATTGTCTGTGATGCTACCA+AGG 0.585980 2_4:+27854704 Msa0323610:CDS
ACCCATAGATCCAATTACAC+TGG 0.587326 2_4:+27854355 Msa0323610:CDS
GTGCTTGAGGCAAGACCACA+TGG 0.588367 2_4:+27858667 Msa0323610:CDS
TGGCAAAGGCCAAATCATCA+AGG 0.590889 2_4:-27858735 None:intergenic
GATGTAATAGAAGCATCAGA+TGG 0.591553 2_4:+27858586 Msa0323610:CDS
TAGAGCAACACCATTGGCAA+AGG 0.598671 2_4:-27858749 None:intergenic
GTTTGTAGATAACTTCTGAA+AGG 0.609183 2_4:+27859409 Msa0323610:intron
GATGTTTGTGTGGATAAAGA+TGG 0.610609 2_4:+27854555 Msa0323610:CDS
CAGTGCAACTAAGTCTGCAA+TGG 0.611496 2_4:+27859506 Msa0323610:CDS
TGCAACTAAGTCTGCAATGG+TGG 0.624741 2_4:+27859509 Msa0323610:CDS
TACCTTAAAAGTTGTCCATG+TGG 0.628210 2_4:-27858682 None:intergenic
CAAGAGTAACTGAACAAGCA+TGG 0.643025 2_4:+27854256 Msa0323610:exon
ATACAGCTACAAGAGATGGA+TGG 0.648594 2_4:+27854586 Msa0323610:CDS
TGGCTAAAAGGAATAAACAA+AGG 0.651228 2_4:+27858960 Msa0323610:CDS
ATCACAACATCCAAAGATGG+TGG 0.659101 2_4:+27854678 Msa0323610:CDS
TTGGTATCTGGATGTGCTTG+AGG 0.671766 2_4:+27858654 Msa0323610:CDS
ACAACCCGAAGATGTTTGTG+TGG 0.703460 2_4:+27854545 Msa0323610:CDS
GTGGTGAAAGTGGATACTGA+AGG 0.772671 2_4:+27859528 Msa0323610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTATTATATTTTTGTT+TGG - chr2_4:27855037-27855056 None:intergenic 10.0%
!!! TAGTAAATGATATTAATTTT+AGG + chr2_4:27856502-27856521 Msa0323610:intron 10.0%
!!! AGTAAATGATATTAATTTTA+GGG + chr2_4:27856503-27856522 Msa0323610:intron 10.0%
!!! TATAAGTAAACTTTTTTTAT+AGG + chr2_4:27856960-27856979 Msa0323610:intron 10.0%
!!! ATAAGTAAACTTTTTTTATA+GGG + chr2_4:27856961-27856980 Msa0323610:intron 10.0%
!! TTTAAGGATAATAAAATTAA+GGG - chr2_4:27857064-27857083 None:intergenic 10.0%
!!! TTTTAAGGATAATAAAATTA+AGG - chr2_4:27857065-27857084 None:intergenic 10.0%
!!! TTAATTTTATTATCCTTAAA+AGG + chr2_4:27857064-27857083 Msa0323610:intron 10.0%
!! AATAAATAATTATCATTAGA+AGG - chr2_4:27859273-27859292 None:intergenic 10.0%
!! TCAATAAAAATTAATGTCTT+TGG - chr2_4:27854171-27854190 None:intergenic 15.0%
!! CTTAAAATATAAGCAAAATA+TGG - chr2_4:27854194-27854213 None:intergenic 15.0%
!! AAAAAAATTATGAAAGTTAC+AGG - chr2_4:27854743-27854762 None:intergenic 15.0%
!!! ATAATTTTTTTTTTACCAAC+AGG + chr2_4:27854752-27854771 Msa0323610:intron 15.0%
!! AAAGTTATCAATTTAATTCT+AGG + chr2_4:27855192-27855211 Msa0323610:intron 15.0%
!!! AAAAAACAAACTTACTTTTT+TGG + chr2_4:27855591-27855610 Msa0323610:intron 15.0%
!! AATATTTAAAGAATGTTTCA+AGG - chr2_4:27855664-27855683 None:intergenic 15.0%
!!! CATTCTTTAAATATTTTAGA+TGG + chr2_4:27855669-27855688 Msa0323610:intron 15.0%
!!! AAATTTTGAGTTTTTTTTTC+AGG + chr2_4:27855756-27855775 Msa0323610:intron 15.0%
!!! CTAACTACAATTTTTTTAAA+AGG + chr2_4:27856346-27856365 Msa0323610:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr2_4:27856990-27857009 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr2_4:27856769-27856788 None:intergenic 15.0%
!! TTCAAATATTTAAGAGTTTA+AGG + chr2_4:27856900-27856919 Msa0323610:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr2_4:27856990-27857009 Msa0323610:intron 15.0%
!! TACAATGAACATTAATAAAA+GGG + chr2_4:27857109-27857128 Msa0323610:intron 15.0%
!! ATGAAAATCAAACAAAATTA+TGG + chr2_4:27857379-27857398 Msa0323610:intron 15.0%
!! AATTATGGAAAACAATAATT+TGG + chr2_4:27857394-27857413 Msa0323610:intron 15.0%
!!! AGTAGATTTTTTTTGATTAA+AGG + chr2_4:27858816-27858835 Msa0323610:intron 15.0%
!!! GTAGATTTTTTTTGATTAAA+GGG + chr2_4:27858817-27858836 Msa0323610:intron 15.0%
!!! GATGTATTTAGTTCAAATTT+TGG + chr2_4:27854144-27854163 Msa0323610:five_prime_UTR 20.0%
!!! ATAAAATTTTCACCTGTAAT+TGG - chr2_4:27854424-27854443 None:intergenic 20.0%
!!! ATACATATTATTTTGAACAC+TGG - chr2_4:27854459-27854478 None:intergenic 20.0%
!! ATTAAAAGAATGGTTAGAAA+TGG + chr2_4:27854609-27854628 Msa0323610:CDS 20.0%
!!! AATCATGCAGTATTTTATAT+TGG - chr2_4:27854779-27854798 None:intergenic 20.0%
!! TAGAGATGAATTATTTGTTT+GGG - chr2_4:27854905-27854924 None:intergenic 20.0%
!! ATAAAAAATCCAAGACAATT+AGG + chr2_4:27856448-27856467 Msa0323610:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr2_4:27856639-27856658 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr2_4:27856640-27856659 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+TGG - chr2_4:27856734-27856753 None:intergenic 20.0%
!!! TCTCATTATATTACCTTTTA+AGG - chr2_4:27857080-27857099 None:intergenic 20.0%
!! GTACAATGAACATTAATAAA+AGG + chr2_4:27857108-27857127 Msa0323610:intron 20.0%
!! ACAATGAACATTAATAAAAG+GGG + chr2_4:27857110-27857129 Msa0323610:intron 20.0%
!!! TAATATTTTATATGAGTGAG+TGG - chr2_4:27857282-27857301 None:intergenic 20.0%
!! ATGATATGAATATGATGAAT+TGG + chr2_4:27859363-27859382 Msa0323610:intron 20.0%
!!! AAAAAGTTTGGTGATAATAA+TGG + chr2_4:27859561-27859580 Msa0323610:CDS 20.0%
!!! AAAAGTTTGGTGATAATAAT+GGG + chr2_4:27859562-27859581 Msa0323610:CDS 20.0%
!! ACATACAAGATGATTTATTA+TGG - chr2_4:27859742-27859761 None:intergenic 20.0%
!!! ATAAATCATCTTGTATGTTT+TGG + chr2_4:27859744-27859763 Msa0323610:three_prime_UTR 20.0%
!! AATCACTTTCTGTTATGTTT+TGG - chr2_4:27854502-27854521 None:intergenic 25.0%
! TAACAGAAAGTGATTAAACT+TGG + chr2_4:27854507-27854526 Msa0323610:intron 25.0%
! AATGGTTAGAAATGGAAATT+GGG + chr2_4:27854617-27854636 Msa0323610:CDS 25.0%
! GTAGAGATGAATTATTTGTT+TGG - chr2_4:27854906-27854925 None:intergenic 25.0%
!! TATTGTGTAATGTTCTTTTG+AGG - chr2_4:27855077-27855096 None:intergenic 25.0%
! ATTACACAATATTGTTGATG+AGG + chr2_4:27855086-27855105 Msa0323610:intron 25.0%
!! TTCTATTTTGTGTTAGAGAT+TGG - chr2_4:27855171-27855190 None:intergenic 25.0%
!!! ATTTATTCTGAGATTCATGT+TGG - chr2_4:27855401-27855420 None:intergenic 25.0%
! AATGTTTCAAGGATATTCAT+TGG - chr2_4:27855653-27855672 None:intergenic 25.0%
!!! GGTCTACTAAACAAATTTTT+TGG - chr2_4:27855809-27855828 None:intergenic 25.0%
!!! AACCTTAGTTTTATAAATGC+TGG - chr2_4:27855830-27855849 None:intergenic 25.0%
!! TTATGCTAATGAGTGTTTTA+CGG + chr2_4:27855848-27855867 Msa0323610:intron 25.0%
! CAAAAAAAAAAATGAGAGAG+GGG - chr2_4:27856231-27856250 None:intergenic 25.0%
! CCAAAAAAAAAAATGAGAGA+GGG - chr2_4:27856232-27856251 None:intergenic 25.0%
! ACCAAAAAAAAAAATGAGAG+AGG - chr2_4:27856233-27856252 None:intergenic 25.0%
! AGGGCAAAAAAACAAAATTA+GGG - chr2_4:27856606-27856625 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr2_4:27856928-27856947 Msa0323610:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr2_4:27856929-27856948 Msa0323610:intron 25.0%
!!! TTTTTTAAAGCGTTTTGGTT+TGG - chr2_4:27857342-27857361 None:intergenic 25.0%
!!! AGTTGTTTTTTAAAGCGTTT+TGG - chr2_4:27857347-27857366 None:intergenic 25.0%
! TAATTAGGGAAGATTTCTTT+AGG - chr2_4:27857829-27857848 None:intergenic 25.0%
! AAATCTTCCCTAATTAAATC+AGG + chr2_4:27857833-27857852 Msa0323610:intron 25.0%
!!! TTTCTTCTCATATTTTTGGT+GGG - chr2_4:27857867-27857886 None:intergenic 25.0%
!! GTTCTTTCTTCTCATATTTT+TGG - chr2_4:27857871-27857890 None:intergenic 25.0%
!!! TATTTTGAGGTAGAATTGTT+TGG - chr2_4:27858052-27858071 None:intergenic 25.0%
!!! CTCATTTATTTTGGCATATT+GGG - chr2_4:27858082-27858101 None:intergenic 25.0%
!!! AATTTGTTAGCCTAAAGAAA+AGG + chr2_4:27858406-27858425 Msa0323610:intron 25.0%
!!! TTCTAATTTTTTAGTGAACC+AGG + chr2_4:27858554-27858573 Msa0323610:intron 25.0%
! AAGAAGATAATCTTCATCTT+TGG - chr2_4:27858776-27858795 None:intergenic 25.0%
! TATCATTAGAAGGACAAAAT+TGG - chr2_4:27859263-27859282 None:intergenic 25.0%
!!! TTTCGTTTTAAAGAACTTAG+TGG + chr2_4:27859299-27859318 Msa0323610:intron 25.0%
! ATACATTAAACATGAAGAAG+AGG + chr2_4:27859332-27859351 Msa0323610:intron 25.0%
! TACATTAAACATGAAGAAGA+GGG + chr2_4:27859333-27859352 Msa0323610:intron 25.0%
! GGCAATATTATCAAAAAGTT+TGG + chr2_4:27859549-27859568 Msa0323610:CDS 25.0%
! TAATACTACCCAAATAAAGA+TGG - chr2_4:27859629-27859648 None:intergenic 25.0%
!! TTCACCTTTTAATACATTGA+TGG + chr2_4:27859701-27859720 Msa0323610:three_prime_UTR 25.0%
! TAACATTACTCTTCAAAATG+TGG - chr2_4:27859789-27859808 None:intergenic 25.0%
ATCCAAAAACAACCAATTAC+AGG + chr2_4:27854409-27854428 Msa0323610:CDS 30.0%
AAAGTGATTAAACTTGGAGA+AGG + chr2_4:27854513-27854532 Msa0323610:CDS 30.0%
TTTATCCACACAAACATCTT+CGG - chr2_4:27854553-27854572 None:intergenic 30.0%
!! AGATGGATGGATTAAAAGAA+TGG + chr2_4:27854599-27854618 Msa0323610:CDS 30.0%
GAATGGTTAGAAATGGAAAT+TGG + chr2_4:27854616-27854635 Msa0323610:CDS 30.0%
! GTATTTTATATTGGACCTGT+TGG - chr2_4:27854770-27854789 None:intergenic 30.0%
GTTATCCTTTCACAAGTAAA+TGG + chr2_4:27854861-27854880 Msa0323610:CDS 30.0%
ATGACATTGTGACAATAAAG+AGG - chr2_4:27855125-27855144 None:intergenic 30.0%
TATTGTCACAATGTCATTCT+AGG + chr2_4:27855128-27855147 Msa0323610:intron 30.0%
GACCAGCATTTATAAAACTA+AGG + chr2_4:27855825-27855844 Msa0323610:intron 30.0%
AAAAGACCAAATATCTTCCA+TGG - chr2_4:27856101-27856120 None:intergenic 30.0%
!!! CCCTCTCTCATTTTTTTTTT+TGG + chr2_4:27856229-27856248 Msa0323610:intron 30.0%
ACGATAACTAAAATGAGAGA+GGG - chr2_4:27856262-27856281 None:intergenic 30.0%
AACGATAACTAAAATGAGAG+AGG - chr2_4:27856263-27856282 None:intergenic 30.0%
GTTAGTGTAGTAATTAAGTG+AGG - chr2_4:27856331-27856350 None:intergenic 30.0%
TGTCTTCATAATAAGTGCTT+AGG - chr2_4:27856429-27856448 None:intergenic 30.0%
TAGTATCTTCCTAATTGTCT+TGG - chr2_4:27856460-27856479 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr2_4:27857021-27857040 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr2_4:27857020-27857039 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr2_4:27857005-27857024 None:intergenic 30.0%
CAGGGCAAAAAAACAAAATT+AGG - chr2_4:27856607-27856626 None:intergenic 30.0%
!!! TTTGCGATAATTTTTTGTGG+AGG - chr2_4:27856731-27856750 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr2_4:27856866-27856885 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr2_4:27857005-27857024 Msa0323610:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr2_4:27857020-27857039 Msa0323610:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr2_4:27857021-27857040 Msa0323610:intron 30.0%
AGGTAATATAATGAGACGAA+TGG + chr2_4:27857084-27857103 Msa0323610:intron 30.0%
TAAACAATTGTATTGGAGGA+TGG - chr2_4:27857659-27857678 None:intergenic 30.0%
GAACTAAACAATTGTATTGG+AGG - chr2_4:27857663-27857682 None:intergenic 30.0%
! ATTCTAAACCCTCCTTATTT+GGG - chr2_4:27857687-27857706 None:intergenic 30.0%
AATTCTAAACCCTCCTTATT+TGG - chr2_4:27857688-27857707 None:intergenic 30.0%
TGGAAGAAATAGAGGAAAAT+GGG - chr2_4:27857745-27857764 None:intergenic 30.0%
TGCTTTGCCTGATTTAATTA+GGG - chr2_4:27857843-27857862 None:intergenic 30.0%
ATGCTTTGCCTGATTTAATT+AGG - chr2_4:27857844-27857863 None:intergenic 30.0%
!!! CTTTCTTCTCATATTTTTGG+TGG - chr2_4:27857868-27857887 None:intergenic 30.0%
TGCGTTTAAGAAACATGAAT+TGG - chr2_4:27857947-27857966 None:intergenic 30.0%
ATGTTTCTTAAACGCAAGAA+GGG + chr2_4:27857951-27857970 Msa0323610:intron 30.0%
GTTTGGATTCATTATTGCTA+GGG - chr2_4:27858035-27858054 None:intergenic 30.0%
TGTTTGGATTCATTATTGCT+AGG - chr2_4:27858036-27858055 None:intergenic 30.0%
! ATTGGGACATATGTATTTTG+AGG - chr2_4:27858065-27858084 None:intergenic 30.0%
!!! CCTCATTTATTTTGGCATAT+TGG - chr2_4:27858083-27858102 None:intergenic 30.0%
CCAATATGCCAAAATAAATG+AGG + chr2_4:27858080-27858099 Msa0323610:intron 30.0%
!! AATGGGTTCCTCATTTATTT+TGG - chr2_4:27858091-27858110 None:intergenic 30.0%
!!! TTTTGGAACATTCATGGAAT+GGG - chr2_4:27858108-27858127 None:intergenic 30.0%
!!! ATCTTCTTTTGGAACATTCA+TGG - chr2_4:27858114-27858133 None:intergenic 30.0%
GTCGATAAATACGTAATCAA+GGG + chr2_4:27858212-27858231 Msa0323610:intron 30.0%
GCTTCTTGAAAACAGAAAAA+AGG + chr2_4:27858312-27858331 Msa0323610:intron 30.0%
GAAAACAGAAAAAAGGATAC+TGG + chr2_4:27858319-27858338 Msa0323610:intron 30.0%
! ATAACGGTTTCATTTGAGAT+AGG - chr2_4:27858712-27858731 None:intergenic 30.0%
CAAATCATCAAGGACAATAA+CGG - chr2_4:27858728-27858747 None:intergenic 30.0%
ATTTGTTCTTCTTGTGAATC+AGG + chr2_4:27858919-27858938 Msa0323610:intron 30.0%
! TGTCTTAAACATTGGCTAAA+AGG + chr2_4:27858948-27858967 Msa0323610:CDS 30.0%
TGGCTAAAAGGAATAAACAA+AGG + chr2_4:27858960-27858979 Msa0323610:CDS 30.0%
ACATTAAACATGAAGAAGAG+GGG + chr2_4:27859334-27859353 Msa0323610:intron 30.0%
GTTTGTAGATAACTTCTGAA+AGG + chr2_4:27859409-27859428 Msa0323610:intron 30.0%
! CTGATCAAATTAATTAGCCT+TGG - chr2_4:27859486-27859505 None:intergenic 30.0%
! TTTGAGGACCATCTTTATTT+GGG + chr2_4:27859618-27859637 Msa0323610:CDS 30.0%
! AGTATTAAGACTGACTTTGT+TGG + chr2_4:27859642-27859661 Msa0323610:CDS 30.0%
TGCACCATCAATGTATTAAA+AGG - chr2_4:27859708-27859727 None:intergenic 30.0%
!! GCTTGAGGTTTTGATCAAAT+TGG - chr2_4:27854285-27854304 None:intergenic 35.0%
TTTGATCAAAACCTCAAGCT+TGG + chr2_4:27854286-27854305 Msa0323610:CDS 35.0%
TCCAGTGTAATTGGATCTAT+GGG - chr2_4:27854359-27854378 None:intergenic 35.0%
TTCCAGTGTAATTGGATCTA+TGG - chr2_4:27854360-27854379 None:intergenic 35.0%
GAAGGAATTTCCAGTGTAAT+TGG - chr2_4:27854368-27854387 None:intergenic 35.0%
!! CACCTGTAATTGGTTGTTTT+TGG - chr2_4:27854414-27854433 None:intergenic 35.0%
TTATCCACACAAACATCTTC+GGG - chr2_4:27854552-27854571 None:intergenic 35.0%
GATGTTTGTGTGGATAAAGA+TGG + chr2_4:27854555-27854574 Msa0323610:CDS 35.0%
TTGTATACAGCTACAAGAGA+TGG + chr2_4:27854582-27854601 Msa0323610:CDS 35.0%
GAAATGGAAATTGGGAGAAT+TGG + chr2_4:27854625-27854644 Msa0323610:CDS 35.0%
ATAGATAGCACTTCTTTGCT+TGG + chr2_4:27854654-27854673 Msa0323610:CDS 35.0%
CAGGCTTGATTTAATTACCT+TGG - chr2_4:27854724-27854743 None:intergenic 35.0%
CTAAAGGTTACAGAAGAAGA+TGG + chr2_4:27854831-27854850 Msa0323610:CDS 35.0%
GAGAACCATTTACTTGTGAA+AGG - chr2_4:27854869-27854888 None:intergenic 35.0%
TTTGCACATTTACCTTACCA+AGG + chr2_4:27854965-27854984 Msa0323610:intron 35.0%
ACCTTACCAAGGAGTTAAAA+TGG + chr2_4:27854976-27854995 Msa0323610:intron 35.0%
!!! TCCATTTTAACTCCTTGGTA+AGG - chr2_4:27854980-27854999 None:intergenic 35.0%
!!! CTTTCTCCATTTTAACTCCT+TGG - chr2_4:27854985-27855004 None:intergenic 35.0%
! TTGTGTTAGAGATTGGTTCA+AGG - chr2_4:27855164-27855183 None:intergenic 35.0%
GCAAGTTGTGAAACATTTGT+CGG - chr2_4:27855349-27855368 None:intergenic 35.0%
!! TTTCACAACTTGCTGAAAGT+TGG + chr2_4:27855356-27855375 Msa0323610:intron 35.0%
!! TGTTTTACGGACACTTGTTA+AGG + chr2_4:27855861-27855880 Msa0323610:intron 35.0%
TCTTCACAAGATTTCTGTAG+GGG - chr2_4:27856042-27856061 None:intergenic 35.0%
CTCTTCACAAGATTTCTGTA+GGG - chr2_4:27856043-27856062 None:intergenic 35.0%
ACTCTTCACAAGATTTCTGT+AGG - chr2_4:27856044-27856063 None:intergenic 35.0%
! TCGGTTTTTGCATGCATTTT+TGG - chr2_4:27856124-27856143 None:intergenic 35.0%
!!! AGTTTTTGTTTTCTCTTGCG+TGG + chr2_4:27856161-27856180 Msa0323610:intron 35.0%
CGATAACTAAAATGAGAGAG+GGG - chr2_4:27856261-27856280 None:intergenic 35.0%
! TTTTTACTGAACTACGAGTG+AGG + chr2_4:27857189-27857208 Msa0323610:intron 35.0%
AGGGAAAATATGTACAACAG+AGG + chr2_4:27857311-27857330 Msa0323610:intron 35.0%
GGGAAAATATGTACAACAGA+GGG + chr2_4:27857312-27857331 Msa0323610:intron 35.0%
AAAATATGTACAACAGAGGG+AGG + chr2_4:27857315-27857334 Msa0323610:intron 35.0%
! CAAAGTCTTATGGACAGATA+TGG - chr2_4:27857424-27857443 None:intergenic 35.0%
AACTCGCAAACAAAGTCTTA+TGG - chr2_4:27857434-27857453 None:intergenic 35.0%
! TAAGACTTTGTTTGCGAGTT+TGG + chr2_4:27857434-27857453 Msa0323610:intron 35.0%
!! TTTGTGGGTTGGAAATATGA+GGG + chr2_4:27857477-27857496 Msa0323610:intron 35.0%
GGGGAACTAAACAATTGTAT+TGG - chr2_4:27857666-27857685 None:intergenic 35.0%
! TTGTTTAGTTCCCCCAAATA+AGG + chr2_4:27857672-27857691 Msa0323610:intron 35.0%
! TTCTAAACCCTCCTTATTTG+GGG - chr2_4:27857686-27857705 None:intergenic 35.0%
AGAAATAGAGGAAAATGGGA+GGG - chr2_4:27857741-27857760 None:intergenic 35.0%
AAGAAATAGAGGAAAATGGG+AGG - chr2_4:27857742-27857761 None:intergenic 35.0%
GTGGAAGAAATAGAGGAAAA+TGG - chr2_4:27857746-27857765 None:intergenic 35.0%
! CTTTGTTTGTGAGTTTGGAT+GGG - chr2_4:27857806-27857825 None:intergenic 35.0%
!! TTAGGCTTTGTTTGTGAGTT+TGG - chr2_4:27857811-27857830 None:intergenic 35.0%
CATGTTTCTTAAACGCAAGA+AGG + chr2_4:27857950-27857969 Msa0323610:intron 35.0%
!!! CTTTTGGAACATTCATGGAA+TGG - chr2_4:27858109-27858128 None:intergenic 35.0%
! TCTCAACGAAGATCTTCTTT+TGG - chr2_4:27858125-27858144 None:intergenic 35.0%
CGTCGATAAATACGTAATCA+AGG + chr2_4:27858211-27858230 Msa0323610:intron 35.0%
TCGTTGTTCGAATGTTAACA+AGG - chr2_4:27858291-27858310 None:intergenic 35.0%
TATTACATCATCTGCAAACC+TGG - chr2_4:27858575-27858594 None:intergenic 35.0%
!! GATGTAATAGAAGCATCAGA+TGG + chr2_4:27858586-27858605 Msa0323610:CDS 35.0%
AGTGTTCCAAGTACCAAATT+TGG + chr2_4:27858622-27858641 Msa0323610:CDS 35.0%
TGCATACCAAATTTGGTACT+TGG - chr2_4:27858631-27858650 None:intergenic 35.0%
CCAATTGTGCATACCAAATT+TGG - chr2_4:27858638-27858657 None:intergenic 35.0%
CCAAATTTGGTATGCACAAT+TGG + chr2_4:27858635-27858654 Msa0323610:CDS 35.0%
TACCTTAAAAGTTGTCCATG+TGG - chr2_4:27858685-27858704 None:intergenic 35.0%
! CGTTATTGTCCTTGATGATT+TGG + chr2_4:27858726-27858745 Msa0323610:CDS 35.0%
TCTTCTTGTGAATCAGGTTT+AGG + chr2_4:27858925-27858944 Msa0323610:intron 35.0%
GGTTTAGGTGTCTTAAACAT+TGG + chr2_4:27858940-27858959 Msa0323610:intron 35.0%
TTTATTGAAAACCTTCCAGC+TGG + chr2_4:27858996-27859015 Msa0323610:CDS 35.0%
GGAGCAAGATTAATGTTATC+AGG - chr2_4:27859023-27859042 None:intergenic 35.0%
AACATTAATCTTGCTCCTGA+TGG + chr2_4:27859026-27859045 Msa0323610:CDS 35.0%
ATTCTGGATCGCTTTAATTC+AGG + chr2_4:27859052-27859071 Msa0323610:CDS 35.0%
! GTAGATAACTTCTGAAAGGA+CGG + chr2_4:27859413-27859432 Msa0323610:intron 35.0%
! TAGATAACTTCTGAAAGGAC+GGG + chr2_4:27859414-27859433 Msa0323610:intron 35.0%
!! ACTTGGTAGCTTTATTTCCA+AGG + chr2_4:27859466-27859485 Msa0323610:CDS 35.0%
AACTTCAGCTATTGAGTTTG+AGG + chr2_4:27859602-27859621 Msa0323610:CDS 35.0%
GTTTGAGGACCATCTTTATT+TGG + chr2_4:27859617-27859636 Msa0323610:CDS 35.0%
! TAGTTCTATGCACTTTGCAA+TGG - chr2_4:27859675-27859694 None:intergenic 35.0%
CATGCTTGTTCAGTTACTCT+TGG - chr2_4:27854258-27854277 None:intergenic 40.0%
CAAGAGTAACTGAACAAGCA+TGG + chr2_4:27854256-27854275 Msa0323610:exon 40.0%
ACCCATAGATCCAATTACAC+TGG + chr2_4:27854355-27854374 Msa0323610:CDS 40.0%
ATACAGCTACAAGAGATGGA+TGG + chr2_4:27854586-27854605 Msa0323610:CDS 40.0%
GGAATCACAACATCCAAAGA+TGG + chr2_4:27854675-27854694 Msa0323610:CDS 40.0%
ATCACAACATCCAAAGATGG+TGG + chr2_4:27854678-27854697 Msa0323610:CDS 40.0%
TGCAAAATGTAACGACGTGT+CGG - chr2_4:27854804-27854823 None:intergenic 40.0%
! ACACGTCGTTACATTTTGCA+GGG + chr2_4:27854804-27854823 Msa0323610:intron 40.0%
!!! CATTTTGCAGGGTTTGCTAA+AGG + chr2_4:27854815-27854834 Msa0323610:intron 40.0%
CAAGTAGTGTTCATATGTGG+TGG - chr2_4:27855012-27855031 None:intergenic 40.0%
GCTCAAGTAGTGTTCATATG+TGG - chr2_4:27855015-27855034 None:intergenic 40.0%
CTTGTGAAGAGTCTTGCTTA+AGG + chr2_4:27856052-27856071 Msa0323610:intron 40.0%
TGAAGAGTCTTGCTTAAGGT+GGG + chr2_4:27856056-27856075 Msa0323610:intron 40.0%
CACTGACCATGGAAGATATT+TGG + chr2_4:27856092-27856111 Msa0323610:intron 40.0%
TGAGTAGGGACTAATACTCA+GGG - chr2_4:27856625-27856644 None:intergenic 40.0%
TTGAGTAGGGACTAATACTC+AGG - chr2_4:27856626-27856645 None:intergenic 40.0%
TTTATATGAGTGAGTGGCAG+AGG - chr2_4:27857276-27857295 None:intergenic 40.0%
! ACTTTGTTTGCGAGTTTGGA+GGG + chr2_4:27857438-27857457 Msa0323610:intron 40.0%
!! CTTTGTGGGTTGGAAATATG+AGG + chr2_4:27857476-27857495 Msa0323610:intron 40.0%
TTGTATTGGAGGATGGCTTT+GGG - chr2_4:27857652-27857671 None:intergenic 40.0%
ATTGTATTGGAGGATGGCTT+TGG - chr2_4:27857653-27857672 None:intergenic 40.0%
! TTTAGTTCCCCCAAATAAGG+AGG + chr2_4:27857675-27857694 Msa0323610:intron 40.0%
TTAGTTCCCCCAAATAAGGA+GGG + chr2_4:27857676-27857695 Msa0323610:intron 40.0%
! TCTAAACCCTCCTTATTTGG+GGG - chr2_4:27857685-27857704 None:intergenic 40.0%
GAAATAGAGGAAAATGGGAG+GGG - chr2_4:27857740-27857759 None:intergenic 40.0%
TGAGCAAGTGGAAGAAATAG+AGG - chr2_4:27857753-27857772 None:intergenic 40.0%
GGAAAAAAGGAATGAGCAAG+TGG - chr2_4:27857765-27857784 None:intergenic 40.0%
TTTGTGAGTTTGGATGGGAA+GGG - chr2_4:27857801-27857820 None:intergenic 40.0%
!! GCTTTGTTTGTGAGTTTGGA+TGG - chr2_4:27857807-27857826 None:intergenic 40.0%
! ATGAATTGGTGCCTTGTATC+TGG - chr2_4:27857933-27857952 None:intergenic 40.0%
GTAATTAAAACCCGGTCTCA+GGG - chr2_4:27858164-27858183 None:intergenic 40.0%
AAAAAAGAAGGCAAGTCGCT+CGG - chr2_4:27858186-27858205 None:intergenic 40.0%
ATCGACGTCGCAAAAAAAGA+AGG - chr2_4:27858198-27858217 None:intergenic 40.0%
ATGTTTGCAACACTTGAGCA+GGG - chr2_4:27858434-27858453 None:intergenic 40.0%
AATGTTTGCAACACTTGAGC+AGG - chr2_4:27858435-27858454 None:intergenic 40.0%
TGGTATGCACAATTGGTATC+TGG + chr2_4:27858642-27858661 Msa0323610:CDS 40.0%
! GACCACATGGACAACTTTTA+AGG + chr2_4:27858680-27858699 Msa0323610:CDS 40.0%
TTTGGATAGAGCAACACCAT+TGG - chr2_4:27858758-27858777 None:intergenic 40.0%
ATCTTCTTGTCTGCGAAACT+TGG + chr2_4:27858788-27858807 Msa0323610:CDS 40.0%
TTAATGTTATCAGGTCCAGC+TGG - chr2_4:27859014-27859033 None:intergenic 40.0%
CAAGTGCTTTGATACCTTAG+AGG - chr2_4:27859451-27859470 None:intergenic 40.0%
!! CTCTAAGGTATCAAAGCACT+TGG + chr2_4:27859449-27859468 Msa0323610:CDS 40.0%
GAAGTTGAAGATGCAGCAGA+AGG - chr2_4:27854386-27854405 None:intergenic 45.0%
ACAACCCGAAGATGTTTGTG+TGG + chr2_4:27854545-27854564 Msa0323610:CDS 45.0%
GACAATGAGACCACCATCTT+TGG - chr2_4:27854691-27854710 None:intergenic 45.0%
CATTGTCTGTGATGCTACCA+AGG + chr2_4:27854704-27854723 Msa0323610:CDS 45.0%
! GACACGTCGTTACATTTTGC+AGG + chr2_4:27854803-27854822 Msa0323610:intron 45.0%
GTGAAGAGTCTTGCTTAAGG+TGG + chr2_4:27856055-27856074 Msa0323610:intron 45.0%
!! CTCTGAAAGCAAGCACTGAT+CGG - chr2_4:27856143-27856162 None:intergenic 45.0%
!! AACCAGCACAAGAAGTGCTT+AGG + chr2_4:27856401-27856420 Msa0323610:intron 45.0%
ATCCTAAGCACTTCTTGTGC+TGG - chr2_4:27856406-27856425 None:intergenic 45.0%
TACGAGTGAGGAAGACATCA+AGG + chr2_4:27857201-27857220 Msa0323610:intron 45.0%
! GACTTTGTTTGCGAGTTTGG+AGG + chr2_4:27857437-27857456 Msa0323610:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr2_4:27857439-27857458 Msa0323610:intron 45.0%
! TGTATTGGAGGATGGCTTTG+GGG - chr2_4:27857651-27857670 None:intergenic 45.0%
AGGGAAAGGCTTGGGAAAAA+AGG - chr2_4:27857778-27857797 None:intergenic 45.0%
GTTTGTGAGTTTGGATGGGA+AGG - chr2_4:27857802-27857821 None:intergenic 45.0%
CTTGTATCTGGCGAAATAGG+TGG - chr2_4:27857921-27857940 None:intergenic 45.0%
CACCTATTTCGCCAGATACA+AGG + chr2_4:27857919-27857938 Msa0323610:intron 45.0%
TGCCTTGTATCTGGCGAAAT+AGG - chr2_4:27857924-27857943 None:intergenic 45.0%
TTGCTGCACGTAATCACTGA+GGG - chr2_4:27858009-27858028 None:intergenic 45.0%
TTTGCTGCACGTAATCACTG+AGG - chr2_4:27858010-27858029 None:intergenic 45.0%
GGTAATTAAAACCCGGTCTC+AGG - chr2_4:27858165-27858184 None:intergenic 45.0%
GTCGCTCGGTAATTAAAACC+CGG - chr2_4:27858172-27858191 None:intergenic 45.0%
!! GAGCAGGGTACCTTTTCTTT+AGG - chr2_4:27858419-27858438 None:intergenic 45.0%
TTGGTATCTGGATGTGCTTG+AGG + chr2_4:27858654-27858673 Msa0323610:CDS 45.0%
TGGCAAAGGCCAAATCATCA+AGG - chr2_4:27858738-27858757 None:intergenic 45.0%
! GATGATTTGGCCTTTGCCAA+TGG + chr2_4:27858739-27858758 Msa0323610:CDS 45.0%
TAGAGCAACACCATTGGCAA+AGG - chr2_4:27858752-27858771 None:intergenic 45.0%
CAGTGCAACTAAGTCTGCAA+TGG + chr2_4:27859506-27859525 Msa0323610:CDS 45.0%
TGCAACTAAGTCTGCAATGG+TGG + chr2_4:27859509-27859528 Msa0323610:CDS 45.0%
GTGGTGAAAGTGGATACTGA+AGG + chr2_4:27859528-27859547 Msa0323610:CDS 45.0%
!! ATAAAATATTATTAGAAAAA+AGG + chr2_4:27857291-27857310 Msa0323610:intron 5.0%
!! TAAAATATTATTAGAAAAAA+GGG + chr2_4:27857292-27857311 Msa0323610:intron 5.0%
TTAAGGTGGGACCAGAGAGT+AGG + chr2_4:27856069-27856088 Msa0323610:intron 50.0%
GAAGCTTAGACATCCCGACT+AGG + chr2_4:27857225-27857244 Msa0323610:intron 50.0%
AGAGGATGAGCGTTTCTTGG+GGG - chr2_4:27857258-27857277 None:intergenic 50.0%
CAGAGGATGAGCGTTTCTTG+GGG - chr2_4:27857259-27857278 None:intergenic 50.0%
GCAGAGGATGAGCGTTTCTT+GGG - chr2_4:27857260-27857279 None:intergenic 50.0%
AGGGTGAGGGAAGACTTTGT+GGG + chr2_4:27857462-27857481 Msa0323610:intron 50.0%
TGAGGGAAGACTTTGTGGGT+TGG + chr2_4:27857466-27857485 Msa0323610:intron 50.0%
!!! GCTTTGGGGGGTTTTTTGGA+GGG - chr2_4:27857637-27857656 None:intergenic 50.0%
!!! GATGGCTTTGGGGGGTTTTT+TGG - chr2_4:27857641-27857660 None:intergenic 50.0%
!! TATTGGAGGATGGCTTTGGG+GGG - chr2_4:27857649-27857668 None:intergenic 50.0%
!! GTATTGGAGGATGGCTTTGG+GGG - chr2_4:27857650-27857669 None:intergenic 50.0%
AAAATGGGAGGGGAGGACTT+TGG - chr2_4:27857730-27857749 None:intergenic 50.0%
ATAGAGGAAAATGGGAGGGG+AGG - chr2_4:27857737-27857756 None:intergenic 50.0%
TGAGTTTGGATGGGAAGGGA+GGG - chr2_4:27857797-27857816 None:intergenic 50.0%
TAATCACTGAGGGGTCGCTT+TGG - chr2_4:27857999-27858018 None:intergenic 50.0%
TGCTGCACGTAATCACTGAG+GGG - chr2_4:27858008-27858027 None:intergenic 50.0%
TGTTATCAGGTCCAGCTGGA+AGG - chr2_4:27859010-27859029 None:intergenic 50.0%
TTGCTCCTGATGGCTCATTC+TGG + chr2_4:27859036-27859055 Msa0323610:CDS 50.0%
GGGATTTGTGCACACCTCTA+AGG + chr2_4:27859434-27859453 Msa0323610:CDS 50.0%
! GTCTGCAATGGTGGTGAAAG+TGG + chr2_4:27859518-27859537 Msa0323610:CDS 50.0%
AGCTGCTAGCACCAAGCTTG+AGG - chr2_4:27854300-27854319 None:intergenic 55.0%
CATGGTCAGTGCCTACTCTC+TGG - chr2_4:27856083-27856102 None:intergenic 55.0%
!! CAGAGAGTAGGCACTGACCA+TGG + chr2_4:27856081-27856100 Msa0323610:intron 55.0%
GAGGATGAGCGTTTCTTGGG+GGG - chr2_4:27857257-27857276 None:intergenic 55.0%
GGCAGAGGATGAGCGTTTCT+TGG - chr2_4:27857261-27857280 None:intergenic 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + chr2_4:27857442-27857461 Msa0323610:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + chr2_4:27857443-27857462 Msa0323610:intron 55.0%
GAGGGTGAGGGAAGACTTTG+TGG + chr2_4:27857461-27857480 Msa0323610:intron 55.0%
!!! GGCTTTGGGGGGTTTTTTGG+AGG - chr2_4:27857638-27857657 None:intergenic 55.0%
TTGGATGGGAAGGGAGGGAA+AGG - chr2_4:27857792-27857811 None:intergenic 55.0%
GTGAGTTTGGATGGGAAGGG+AGG - chr2_4:27857798-27857817 None:intergenic 55.0%
! GAGGGGTCGCTTTGGATTGA+TGG - chr2_4:27857991-27858010 None:intergenic 55.0%
CTTCGTTGAGAACCCAGCGT+TGG + chr2_4:27858134-27858153 Msa0323610:intron 55.0%
! GGGTGCTTATGTGTTGCTGC+TGG + chr2_4:27858232-27858251 Msa0323610:intron 55.0%
GTGCTTGAGGCAAGACCACA+TGG + chr2_4:27858667-27858686 Msa0323610:CDS 55.0%
GCGATCCAGAATGAGCCATC+AGG - chr2_4:27859044-27859063 None:intergenic 55.0%
!! TTGGGGGGTGCTGACCTAGT+CGG - chr2_4:27857242-27857261 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGTGA+GGG + chr2_4:27857449-27857468 Msa0323610:intron 60.0%
TGGGAGGGGAGGACTTTGGA+GGG - chr2_4:27857726-27857745 None:intergenic 60.0%
ATGGGAGGGGAGGACTTTGG+AGG - chr2_4:27857727-27857746 None:intergenic 60.0%
GGGAAGGGAGGGAAAGGCTT+GGG - chr2_4:27857786-27857805 None:intergenic 60.0%
TGGGAAGGGAGGGAAAGGCT+TGG - chr2_4:27857787-27857806 None:intergenic 60.0%
! CGTTGAGAACCCAGCGTTGG+AGG + chr2_4:27858137-27858156 Msa0323610:intron 60.0%
TCTCAGGGTCCTCCAACGCT+GGG - chr2_4:27858149-27858168 None:intergenic 60.0%
!! TGGGGGGTGCTGACCTAGTC+GGG - chr2_4:27857241-27857260 None:intergenic 65.0%
CGAGTTTGGAGGGGAGGGTG+AGG + chr2_4:27857448-27857467 Msa0323610:intron 65.0%
GTCTCAGGGTCCTCCAACGC+TGG - chr2_4:27858150-27858169 None:intergenic 65.0%
GCGTTGGAGGACCCTGAGAC+CGG + chr2_4:27858150-27858169 Msa0323610:intron 65.0%
CGTTGGAGGACCCTGAGACC+GGG + chr2_4:27858151-27858170 Msa0323610:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 27854105 27859860 27854105 ID=Msa0323610;Name=Msa0323610
chr2_4 mRNA 27854105 27859860 27854105 ID=Msa0323610-mRNA-1;Parent=Msa0323610;Name=Msa0323610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|1|1|1|0.83|0.71|7|171|360
chr2_4 exon 27854105 27854195 27854105 ID=Msa0323610-mRNA-1:exon:9610;Parent=Msa0323610-mRNA-1
chr2_4 exon 27854220 27854430 27854220 ID=Msa0323610-mRNA-1:exon:9611;Parent=Msa0323610-mRNA-1
chr2_4 exon 27854513 27854725 27854513 ID=Msa0323610-mRNA-1:exon:9612;Parent=Msa0323610-mRNA-1
chr2_4 exon 27854825 27854895 27854825 ID=Msa0323610-mRNA-1:exon:9613;Parent=Msa0323610-mRNA-1
chr2_4 exon 27858576 27858812 27858576 ID=Msa0323610-mRNA-1:exon:9614;Parent=Msa0323610-mRNA-1
chr2_4 exon 27858941 27859073 27858941 ID=Msa0323610-mRNA-1:exon:9615;Parent=Msa0323610-mRNA-1
chr2_4 exon 27859417 27859860 27859417 ID=Msa0323610-mRNA-1:exon:9616;Parent=Msa0323610-mRNA-1
chr2_4 five_prime_UTR 27854105 27854195 27854105 ID=Msa0323610-mRNA-1:five_prime_utr;Parent=Msa0323610-mRNA-1
chr2_4 five_prime_UTR 27854220 27854274 27854220 ID=Msa0323610-mRNA-1:five_prime_utr;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27854275 27854430 27854275 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27854513 27854725 27854513 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27854825 27854895 27854825 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27858576 27858812 27858576 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27858941 27859073 27858941 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 CDS 27859417 27859689 27859417 ID=Msa0323610-mRNA-1:cds;Parent=Msa0323610-mRNA-1
chr2_4 three_prime_UTR 27859690 27859860 27859690 ID=Msa0323610-mRNA-1:three_prime_utr;Parent=Msa0323610-mRNA-1
Gene Sequence

>Msa0323610

ATGGCTTCCAATTTGATCAAAACCTCAAGCTTGGTGCTAGCAGCTTTAGTTGCTCTCACAGTTCAAGTCTTCTACTTCTCACCCATAGATCCAATTACACTGGAAATTCCTTCTGCTGCATCTTCAACTTCTTCATCCAAAAACAACCAATTACAGAAAGTGATTAAACTTGGAGAAGGATTTCTGAAACAACCCGAAGATGTTTGTGTGGATAAAGATGGTGTCTTGTATACAGCTACAAGAGATGGATGGATTAAAAGAATGGTTAGAAATGGAAATTGGGAGAATTGGAAGCATATAGATAGCACTTCTTTGCTTGGAATCACAACATCCAAAGATGGTGGTCTCATTGTCTGTGATGCTACCAAGGGTTTGCTAAAGGTTACAGAAGAAGATGGTTTCAGTGTTATCCTTTCACAAGTAAATGGTTCTCAATTAATGTTTGCAGATGATGTAATAGAAGCATCAGATGGAAATATATATTTCAGTGTTCCAAGTACCAAATTTGGTATGCACAATTGGTATCTGGATGTGCTTGAGGCAAGACCACATGGACAACTTTTAAGGTACAATCCTATCTCAAATGAAACCGTTATTGTCCTTGATGATTTGGCCTTTGCCAATGGTGTTGCTCTATCCAAAGATGAAGATTATCTTCTTGTCTGCGAAACTTGGAAGTTTAGGTGTCTTAAACATTGGCTAAAAGGAATAAACAAAGGTAAAACAAATATCTTTATTGAAAACCTTCCAGCTGGACCTGATAACATTAATCTTGCTCCTGATGGCTCATTCTGGATCGCTTTAATTCAGATAACTTCTGAAAGGACGGGATTTGTGCACACCTCTAAGGTATCAAAGCACTTGGTAGCTTTATTTCCAAGGCTAATTAATTTGATCAGCAGTGCAACTAAGTCTGCAATGGTGGTGAAAGTGGATACTGAAGGCAATATTATCAAAAAGTTTGGTGATAATAATGGGAAGATCATTAATTTTGTAACTTCAGCTATTGAGTTTGAGGACCATCTTTATTTGGGTAGTATTAAGACTGACTTTGTTGGAAAATTTCCATTGCAAAGTGCATAG

Protein sequence

>Msa0323610

MASNLIKTSSLVLAALVALTVQVFYFSPIDPITLEIPSAASSTSSSKNNQLQKVIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNGNWENWKHIDSTSLLGITTSKDGGLIVCDATKGLLKVTEEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVPSTKFGMHNWYLDVLEARPHGQLLRYNPISNETVIVLDDLAFANGVALSKDEDYLLVCETWKFRCLKHWLKGINKGKTNIFIENLPAGPDNINLAPDGSFWIALIQITSERTGFVHTSKVSKHLVALFPRLINLISSATKSAMVVKVDTEGNIIKKFGDNNGKIINFVTSAIEFEDHLYLGSIKTDFVGKFPLQSA*