Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000109.t1 | XP_013443411.1 | 98.4 | 387 | 6 | 0 | 1 | 387 | 1 | 387 | 4.40E-218 | 766.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000109.t1 | Q6ZHC8 | 67.7 | 384 | 122 | 2 | 1 | 383 | 1 | 383 | 5.9e-155 | 548.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000109.t1 | A0A072TJV7 | 98.4 | 387 | 6 | 0 | 1 | 387 | 1 | 387 | 3.2e-218 | 766.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012148 | MS.gene000109 | PPI |
| MS.gene76034 | MS.gene000109 | PPI |
| MS.gene074258 | MS.gene000109 | PPI |
| MS.gene28886 | MS.gene000109 | PPI |
| MS.gene000109 | MS.gene017596 | PPI |
| MS.gene000109 | MS.gene28884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000109.t1 | MTR_0015s0140 | 98.450 | 387 | 6 | 0 | 1 | 387 | 1 | 387 | 0.0 | 792 |
| MS.gene000109.t1 | MTR_0015s0140 | 96.516 | 287 | 10 | 0 | 101 | 387 | 47 | 333 | 0.0 | 574 |
| MS.gene000109.t1 | MTR_7g081020 | 54.155 | 373 | 154 | 5 | 9 | 370 | 4 | 370 | 1.43e-145 | 418 |
| MS.gene000109.t1 | MTR_1g112840 | 53.665 | 382 | 158 | 5 | 1 | 370 | 1 | 375 | 5.42e-145 | 417 |
| MS.gene000109.t1 | MTR_1g116260 | 53.333 | 375 | 154 | 5 | 5 | 370 | 6 | 368 | 8.23e-139 | 400 |
| MS.gene000109.t1 | MTR_2g033910 | 50.798 | 376 | 178 | 4 | 1 | 373 | 1 | 372 | 4.68e-138 | 399 |
| MS.gene000109.t1 | MTR_8g074930 | 53.333 | 345 | 150 | 3 | 37 | 370 | 29 | 373 | 3.26e-133 | 387 |
| MS.gene000109.t1 | MTR_1g106855 | 55.901 | 322 | 139 | 1 | 36 | 354 | 18 | 339 | 1.19e-129 | 377 |
| MS.gene000109.t1 | MTR_1g067210 | 53.936 | 343 | 148 | 3 | 38 | 370 | 27 | 369 | 6.28e-128 | 373 |
| MS.gene000109.t1 | MTR_3g032660 | 49.364 | 393 | 178 | 8 | 1 | 386 | 1 | 379 | 1.87e-123 | 363 |
| MS.gene000109.t1 | MTR_3g032700 | 49.109 | 393 | 179 | 8 | 1 | 386 | 1 | 379 | 5.03e-123 | 362 |
| MS.gene000109.t1 | MTR_7g100240 | 55.183 | 328 | 138 | 3 | 38 | 356 | 22 | 349 | 3.08e-121 | 355 |
| MS.gene000109.t1 | MTR_7g090550 | 52.459 | 366 | 146 | 10 | 1 | 353 | 1 | 351 | 1.29e-119 | 354 |
| MS.gene000109.t1 | MTR_7g081020 | 54.248 | 306 | 125 | 4 | 9 | 305 | 4 | 303 | 8.44e-117 | 342 |
| MS.gene000109.t1 | MTR_7g090530 | 49.485 | 388 | 174 | 8 | 1 | 380 | 1 | 374 | 1.99e-116 | 346 |
| MS.gene000109.t1 | MTR_1g106855 | 53.818 | 275 | 124 | 1 | 36 | 307 | 18 | 292 | 3.06e-102 | 305 |
| MS.gene000109.t1 | MTR_8g074930 | 53.640 | 261 | 118 | 2 | 113 | 370 | 1 | 261 | 2.10e-100 | 299 |
| MS.gene000109.t1 | MTR_3g032590 | 50.694 | 288 | 134 | 5 | 105 | 386 | 100 | 385 | 3.22e-92 | 284 |
| MS.gene000109.t1 | MTR_4g113480 | 41.176 | 323 | 174 | 7 | 38 | 353 | 34 | 347 | 2.51e-70 | 230 |
| MS.gene000109.t1 | MTR_4g113345 | 35.838 | 346 | 185 | 11 | 41 | 380 | 22 | 336 | 9.23e-56 | 186 |
| MS.gene000109.t1 | MTR_7g090540 | 47.964 | 221 | 92 | 6 | 165 | 380 | 5 | 207 | 4.50e-50 | 169 |
| MS.gene000109.t1 | MTR_4g113210 | 37.838 | 259 | 134 | 7 | 38 | 286 | 16 | 257 | 6.38e-50 | 169 |
| MS.gene000109.t1 | MTR_7g060770 | 31.757 | 296 | 172 | 10 | 78 | 353 | 262 | 547 | 1.91e-38 | 145 |
| MS.gene000109.t1 | MTR_4g076560 | 30.435 | 299 | 185 | 8 | 78 | 361 | 201 | 491 | 2.28e-37 | 141 |
| MS.gene000109.t1 | MTR_4g119830 | 31.698 | 265 | 161 | 6 | 101 | 352 | 230 | 487 | 7.51e-34 | 131 |
| MS.gene000109.t1 | MTR_4g098650 | 28.247 | 308 | 155 | 8 | 111 | 358 | 472 | 773 | 3.07e-27 | 114 |
| MS.gene000109.t1 | MTR_4g063905 | 28.000 | 275 | 153 | 8 | 118 | 353 | 428 | 696 | 5.97e-26 | 110 |
| MS.gene000109.t1 | MTR_3g464650 | 28.777 | 278 | 141 | 8 | 75 | 350 | 90 | 312 | 2.66e-25 | 105 |
| MS.gene000109.t1 | MTR_3g464700 | 30.667 | 225 | 115 | 5 | 75 | 298 | 114 | 298 | 4.32e-25 | 104 |
| MS.gene000109.t1 | MTR_5g071550 | 29.078 | 282 | 143 | 9 | 75 | 354 | 150 | 376 | 3.08e-24 | 103 |
| MS.gene000109.t1 | MTR_3g091060 | 26.269 | 335 | 172 | 11 | 31 | 355 | 74 | 343 | 1.31e-22 | 98.2 |
| MS.gene000109.t1 | MTR_1g085530 | 30.899 | 178 | 114 | 3 | 180 | 353 | 712 | 884 | 4.68e-21 | 95.9 |
| MS.gene000109.t1 | MTR_5g071550 | 30.317 | 221 | 111 | 7 | 75 | 293 | 150 | 329 | 1.28e-19 | 89.7 |
| MS.gene000109.t1 | MTR_7g093240 | 32.667 | 150 | 64 | 4 | 158 | 304 | 4 | 119 | 2.28e-19 | 84.0 |
| MS.gene000109.t1 | MTR_3g105730 | 27.984 | 243 | 136 | 6 | 79 | 320 | 43 | 247 | 3.64e-18 | 84.3 |
| MS.gene000109.t1 | MTR_1g014640 | 28.676 | 272 | 136 | 9 | 79 | 350 | 108 | 321 | 4.95e-18 | 84.7 |
| MS.gene000109.t1 | MTR_1g013400 | 28.676 | 272 | 136 | 9 | 79 | 350 | 108 | 321 | 4.95e-18 | 84.7 |
| MS.gene000109.t1 | MTR_3g105730 | 27.984 | 243 | 136 | 6 | 79 | 320 | 65 | 269 | 5.25e-18 | 84.0 |
| MS.gene000109.t1 | MTR_5g024340 | 28.235 | 255 | 136 | 8 | 70 | 316 | 115 | 330 | 5.50e-18 | 85.1 |
| MS.gene000109.t1 | MTR_1g115570 | 28.571 | 224 | 116 | 7 | 79 | 301 | 126 | 306 | 1.77e-17 | 83.2 |
| MS.gene000109.t1 | MTR_1g086350 | 26.923 | 260 | 129 | 9 | 77 | 316 | 100 | 318 | 2.08e-17 | 83.2 |
| MS.gene000109.t1 | MTR_1g086350 | 26.923 | 260 | 129 | 9 | 77 | 316 | 116 | 334 | 2.11e-17 | 83.6 |
| MS.gene000109.t1 | MTR_4g094542 | 27.419 | 248 | 132 | 9 | 73 | 315 | 144 | 348 | 8.96e-17 | 81.3 |
| MS.gene000109.t1 | MTR_4g125810 | 28.405 | 257 | 130 | 10 | 56 | 298 | 229 | 445 | 3.33e-16 | 80.5 |
| MS.gene000109.t1 | MTR_4g037470 | 27.010 | 311 | 168 | 13 | 76 | 356 | 102 | 383 | 4.83e-16 | 79.7 |
| MS.gene000109.t1 | MTR_1g086350 | 26.667 | 255 | 126 | 9 | 82 | 316 | 19 | 232 | 5.36e-16 | 78.2 |
| MS.gene000109.t1 | MTR_4g037470 | 27.010 | 311 | 168 | 13 | 76 | 356 | 93 | 374 | 5.40e-16 | 79.7 |
| MS.gene000109.t1 | MTR_2g078760 | 27.018 | 285 | 149 | 11 | 46 | 317 | 1 | 239 | 6.26e-16 | 77.4 |
| MS.gene000109.t1 | MTR_2g078760 | 27.018 | 285 | 149 | 11 | 46 | 317 | 80 | 318 | 1.30e-15 | 77.4 |
| MS.gene000109.t1 | MTR_4g094208 | 26.354 | 277 | 153 | 10 | 54 | 321 | 32 | 266 | 3.80e-15 | 75.5 |
| MS.gene000109.t1 | MTR_4g116420 | 26.645 | 304 | 155 | 12 | 65 | 355 | 105 | 353 | 5.05e-15 | 76.3 |
| MS.gene000109.t1 | MTR_3g104710 | 25.828 | 302 | 160 | 9 | 79 | 359 | 286 | 544 | 1.22e-14 | 75.9 |
| MS.gene000109.t1 | MTR_2g435550 | 27.458 | 295 | 164 | 10 | 76 | 351 | 75 | 338 | 6.54e-14 | 72.8 |
| MS.gene000109.t1 | MTR_2g435550 | 27.458 | 295 | 164 | 10 | 76 | 351 | 89 | 352 | 6.58e-14 | 72.8 |
| MS.gene000109.t1 | MTR_2g090190 | 26.646 | 319 | 176 | 12 | 76 | 365 | 87 | 376 | 6.85e-14 | 73.2 |
| MS.gene000109.t1 | MTR_4g123080 | 28.125 | 256 | 131 | 10 | 77 | 316 | 93 | 311 | 2.28e-13 | 71.2 |
| MS.gene000109.t1 | MTR_4g123080 | 28.125 | 256 | 131 | 10 | 77 | 316 | 111 | 329 | 3.18e-13 | 70.9 |
| MS.gene000109.t1 | MTR_4g007440 | 25.094 | 267 | 135 | 8 | 79 | 305 | 52 | 293 | 1.20e-12 | 68.9 |
| MS.gene000109.t1 | MTR_7g112490 | 23.026 | 304 | 177 | 11 | 76 | 352 | 88 | 361 | 3.06e-12 | 67.8 |
| MS.gene000109.t1 | MTR_7g112490 | 23.026 | 304 | 177 | 11 | 76 | 352 | 106 | 379 | 3.30e-12 | 67.8 |
| MS.gene000109.t1 | MTR_1g050520 | 24.852 | 338 | 180 | 14 | 33 | 352 | 363 | 644 | 4.09e-12 | 68.2 |
| MS.gene000109.t1 | MTR_2g435550 | 27.099 | 262 | 155 | 8 | 76 | 318 | 89 | 333 | 4.90e-12 | 67.4 |
| MS.gene000109.t1 | MTR_2g008850 | 26.172 | 256 | 138 | 11 | 73 | 321 | 13 | 224 | 5.17e-12 | 65.5 |
| MS.gene000109.t1 | MTR_1g028300 | 28.287 | 251 | 144 | 8 | 74 | 324 | 140 | 354 | 5.43e-12 | 67.0 |
| MS.gene000109.t1 | MTR_1g015110 | 27.826 | 230 | 125 | 10 | 79 | 298 | 290 | 488 | 6.81e-12 | 67.4 |
| MS.gene000109.t1 | MTR_8g463130 | 27.273 | 242 | 127 | 12 | 82 | 317 | 41 | 239 | 1.06e-11 | 65.1 |
| MS.gene000109.t1 | MTR_2g008850 | 25.532 | 282 | 153 | 13 | 53 | 321 | 33 | 270 | 1.10e-11 | 65.5 |
| MS.gene000109.t1 | MTR_8g463130 | 27.273 | 242 | 127 | 12 | 82 | 317 | 69 | 267 | 1.37e-11 | 65.1 |
| MS.gene000109.t1 | MTR_5g080680 | 24.891 | 229 | 134 | 6 | 79 | 300 | 132 | 329 | 1.88e-11 | 65.5 |
| MS.gene000109.t1 | MTR_5g063940 | 25.080 | 311 | 155 | 13 | 53 | 350 | 34 | 279 | 2.10e-11 | 64.3 |
| MS.gene000109.t1 | MTR_8g017240 | 24.823 | 282 | 173 | 10 | 76 | 342 | 83 | 340 | 8.28e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000109.t1 | AT5G06750 | 69.821 | 391 | 110 | 3 | 1 | 383 | 1 | 391 | 0.0 | 555 |
| MS.gene000109.t1 | AT5G06750 | 69.821 | 391 | 110 | 3 | 1 | 383 | 1 | 391 | 0.0 | 555 |
| MS.gene000109.t1 | AT3G51370 | 53.298 | 379 | 159 | 4 | 1 | 370 | 1 | 370 | 1.68e-145 | 417 |
| MS.gene000109.t1 | AT3G51370 | 53.298 | 379 | 159 | 4 | 1 | 370 | 1 | 370 | 1.68e-145 | 417 |
| MS.gene000109.t1 | AT5G06750 | 71.378 | 283 | 76 | 2 | 106 | 383 | 27 | 309 | 1.96e-145 | 415 |
| MS.gene000109.t1 | AT5G66080 | 52.356 | 382 | 164 | 4 | 1 | 370 | 1 | 376 | 9.52e-143 | 411 |
| MS.gene000109.t1 | AT4G38520 | 51.181 | 381 | 169 | 5 | 1 | 370 | 1 | 375 | 5.53e-139 | 402 |
| MS.gene000109.t1 | AT4G38520 | 51.181 | 381 | 169 | 5 | 1 | 370 | 1 | 375 | 5.53e-139 | 402 |
| MS.gene000109.t1 | AT3G12620 | 51.042 | 384 | 172 | 4 | 5 | 378 | 7 | 384 | 3.96e-138 | 399 |
| MS.gene000109.t1 | AT3G12620 | 51.042 | 384 | 172 | 4 | 5 | 378 | 7 | 384 | 3.96e-138 | 399 |
| MS.gene000109.t1 | AT3G17090 | 57.233 | 318 | 135 | 1 | 40 | 356 | 45 | 362 | 3.54e-137 | 397 |
| MS.gene000109.t1 | AT3G55050 | 52.958 | 355 | 154 | 3 | 7 | 352 | 8 | 358 | 3.06e-135 | 392 |
| MS.gene000109.t1 | AT3G55050 | 52.958 | 355 | 154 | 3 | 7 | 352 | 8 | 358 | 3.06e-135 | 392 |
| MS.gene000109.t1 | AT4G33920 | 57.055 | 326 | 136 | 2 | 33 | 354 | 15 | 340 | 1.36e-134 | 390 |
| MS.gene000109.t1 | AT5G02760 | 52.907 | 344 | 153 | 2 | 35 | 370 | 20 | 362 | 2.10e-120 | 353 |
| MS.gene000109.t1 | AT5G66080 | 56.296 | 270 | 109 | 3 | 107 | 370 | 6 | 272 | 1.22e-108 | 320 |
| MS.gene000109.t1 | AT3G17090 | 54.982 | 271 | 121 | 1 | 40 | 309 | 45 | 315 | 4.70e-108 | 320 |
| MS.gene000109.t1 | AT3G51370 | 55.849 | 265 | 115 | 2 | 107 | 370 | 22 | 285 | 9.88e-108 | 318 |
| MS.gene000109.t1 | AT4G33920 | 57.143 | 252 | 104 | 2 | 107 | 354 | 6 | 257 | 1.75e-101 | 303 |
| MS.gene000109.t1 | AT4G33920 | 59.031 | 227 | 89 | 2 | 132 | 354 | 1 | 227 | 1.19e-94 | 284 |
| MS.gene000109.t1 | AT3G16560 | 29.808 | 312 | 177 | 5 | 78 | 352 | 174 | 480 | 5.97e-36 | 137 |
| MS.gene000109.t1 | AT3G16560 | 29.808 | 312 | 177 | 5 | 78 | 352 | 174 | 480 | 5.97e-36 | 137 |
| MS.gene000109.t1 | AT3G16560 | 29.808 | 312 | 177 | 5 | 78 | 352 | 174 | 480 | 5.97e-36 | 137 |
| MS.gene000109.t1 | AT5G02400 | 32.090 | 268 | 142 | 5 | 121 | 353 | 404 | 666 | 5.27e-34 | 134 |
| MS.gene000109.t1 | AT2G35350 | 27.759 | 299 | 160 | 6 | 105 | 352 | 477 | 770 | 2.53e-29 | 120 |
| MS.gene000109.t1 | AT2G40180 | 28.615 | 325 | 153 | 8 | 41 | 354 | 131 | 387 | 2.59e-29 | 117 |
| MS.gene000109.t1 | AT2G46920 | 26.129 | 310 | 158 | 6 | 110 | 353 | 532 | 836 | 3.61e-29 | 120 |
| MS.gene000109.t1 | AT2G46920 | 26.129 | 310 | 158 | 6 | 110 | 353 | 532 | 836 | 3.61e-29 | 120 |
| MS.gene000109.t1 | AT2G46920 | 26.129 | 310 | 158 | 6 | 110 | 353 | 532 | 836 | 3.61e-29 | 120 |
| MS.gene000109.t1 | AT2G46920 | 26.129 | 310 | 158 | 6 | 110 | 353 | 532 | 836 | 3.61e-29 | 120 |
| MS.gene000109.t1 | AT3G09400 | 29.104 | 268 | 149 | 6 | 118 | 353 | 384 | 642 | 6.24e-29 | 119 |
| MS.gene000109.t1 | AT1G07630 | 27.240 | 279 | 160 | 4 | 118 | 358 | 386 | 659 | 1.74e-28 | 117 |
| MS.gene000109.t1 | AT2G28890 | 27.622 | 286 | 161 | 5 | 114 | 358 | 371 | 651 | 2.14e-28 | 117 |
| MS.gene000109.t1 | AT3G16560 | 29.078 | 282 | 158 | 5 | 78 | 322 | 174 | 450 | 3.39e-28 | 115 |
| MS.gene000109.t1 | AT1G07160 | 31.071 | 280 | 138 | 9 | 77 | 354 | 152 | 378 | 5.63e-27 | 110 |
| MS.gene000109.t1 | AT1G67820 | 31.673 | 281 | 141 | 12 | 50 | 317 | 79 | 321 | 7.94e-26 | 108 |
| MS.gene000109.t1 | AT1G67820 | 31.673 | 281 | 141 | 12 | 50 | 317 | 115 | 357 | 8.32e-26 | 108 |
| MS.gene000109.t1 | AT2G30020 | 29.603 | 277 | 137 | 9 | 77 | 350 | 169 | 390 | 1.11e-23 | 102 |
| MS.gene000109.t1 | AT3G09400 | 28.270 | 237 | 129 | 6 | 118 | 322 | 384 | 611 | 1.51e-20 | 94.0 |
| MS.gene000109.t1 | AT4G31750 | 29.832 | 238 | 127 | 7 | 79 | 314 | 64 | 263 | 2.19e-20 | 91.3 |
| MS.gene000109.t1 | AT4G31750 | 29.832 | 238 | 127 | 7 | 79 | 314 | 64 | 263 | 2.19e-20 | 91.3 |
| MS.gene000109.t1 | AT4G31750 | 29.832 | 238 | 127 | 7 | 79 | 314 | 64 | 263 | 2.83e-20 | 90.9 |
| MS.gene000109.t1 | AT2G20630 | 26.471 | 272 | 153 | 11 | 54 | 318 | 34 | 265 | 6.34e-19 | 86.3 |
| MS.gene000109.t1 | AT2G20630 | 26.471 | 272 | 153 | 11 | 54 | 318 | 34 | 265 | 7.12e-19 | 86.7 |
| MS.gene000109.t1 | AT4G28400 | 26.820 | 261 | 147 | 12 | 64 | 321 | 31 | 250 | 1.49e-18 | 85.1 |
| MS.gene000109.t1 | AT3G51470 | 26.774 | 310 | 158 | 11 | 64 | 365 | 47 | 295 | 3.29e-18 | 85.1 |
| MS.gene000109.t1 | AT4G28400 | 26.820 | 261 | 147 | 12 | 64 | 321 | 53 | 272 | 3.30e-18 | 84.3 |
| MS.gene000109.t1 | AT2G33700 | 29.297 | 256 | 134 | 9 | 69 | 316 | 113 | 329 | 3.66e-18 | 85.5 |
| MS.gene000109.t1 | AT3G51470 | 26.861 | 309 | 157 | 11 | 65 | 365 | 92 | 339 | 4.35e-18 | 85.1 |
| MS.gene000109.t1 | AT5G53140 | 23.239 | 284 | 173 | 8 | 42 | 320 | 93 | 336 | 4.83e-18 | 85.5 |
| MS.gene000109.t1 | AT5G53140 | 23.239 | 284 | 173 | 8 | 42 | 320 | 93 | 336 | 4.83e-18 | 85.5 |
| MS.gene000109.t1 | AT1G48040 | 27.645 | 293 | 159 | 11 | 35 | 321 | 90 | 335 | 1.56e-17 | 84.0 |
| MS.gene000109.t1 | AT5G24940 | 29.018 | 224 | 115 | 6 | 79 | 299 | 64 | 246 | 1.85e-17 | 84.0 |
| MS.gene000109.t1 | AT5G10740 | 27.935 | 247 | 123 | 9 | 79 | 316 | 64 | 264 | 3.71e-17 | 82.4 |
| MS.gene000109.t1 | AT5G10740 | 27.935 | 247 | 123 | 9 | 79 | 316 | 64 | 264 | 3.71e-17 | 82.4 |
| MS.gene000109.t1 | AT3G62260 | 26.562 | 256 | 152 | 7 | 69 | 316 | 17 | 244 | 9.15e-17 | 80.5 |
| MS.gene000109.t1 | AT1G43900 | 26.829 | 246 | 130 | 8 | 74 | 313 | 149 | 350 | 2.42e-16 | 80.1 |
| MS.gene000109.t1 | AT3G62260 | 26.459 | 257 | 153 | 7 | 69 | 317 | 107 | 335 | 2.52e-16 | 80.1 |
| MS.gene000109.t1 | AT3G62260 | 26.459 | 257 | 153 | 7 | 69 | 317 | 106 | 334 | 2.70e-16 | 80.1 |
| MS.gene000109.t1 | AT3G16800 | 28.333 | 300 | 149 | 13 | 76 | 351 | 90 | 347 | 3.61e-16 | 79.3 |
| MS.gene000109.t1 | AT3G16800 | 28.333 | 300 | 149 | 13 | 76 | 351 | 90 | 347 | 3.61e-16 | 79.3 |
| MS.gene000109.t1 | AT3G16800 | 28.333 | 300 | 149 | 13 | 76 | 351 | 90 | 347 | 3.61e-16 | 79.3 |
| MS.gene000109.t1 | AT4G26080 | 29.514 | 288 | 156 | 13 | 75 | 350 | 168 | 420 | 3.65e-16 | 80.1 |
| MS.gene000109.t1 | AT3G16800 | 30.213 | 235 | 113 | 10 | 130 | 351 | 56 | 252 | 2.77e-15 | 75.5 |
| MS.gene000109.t1 | AT3G16800 | 30.213 | 235 | 113 | 10 | 130 | 351 | 56 | 252 | 2.77e-15 | 75.5 |
| MS.gene000109.t1 | AT5G26010 | 24.438 | 356 | 229 | 10 | 12 | 357 | 4 | 329 | 4.10e-15 | 76.3 |
| MS.gene000109.t1 | AT2G25620 | 25.088 | 283 | 162 | 10 | 72 | 352 | 122 | 356 | 6.88e-15 | 75.9 |
| MS.gene000109.t1 | AT2G25620 | 25.088 | 283 | 162 | 10 | 72 | 352 | 122 | 356 | 6.88e-15 | 75.9 |
| MS.gene000109.t1 | AT4G28400 | 27.434 | 226 | 123 | 10 | 64 | 288 | 53 | 238 | 2.01e-14 | 73.2 |
| MS.gene000109.t1 | AT1G03590 | 26.623 | 308 | 171 | 14 | 76 | 356 | 87 | 366 | 2.51e-14 | 74.7 |
| MS.gene000109.t1 | AT5G01700 | 26.144 | 306 | 176 | 13 | 76 | 363 | 26 | 299 | 6.74e-14 | 72.4 |
| MS.gene000109.t1 | AT3G17250 | 26.562 | 256 | 141 | 11 | 79 | 321 | 158 | 379 | 1.04e-13 | 72.8 |
| MS.gene000109.t1 | AT5G01700 | 26.144 | 306 | 176 | 13 | 76 | 363 | 75 | 348 | 1.34e-13 | 72.0 |
| MS.gene000109.t1 | AT5G36250 | 27.660 | 329 | 153 | 14 | 76 | 355 | 95 | 387 | 2.34e-13 | 71.6 |
| MS.gene000109.t1 | AT5G57050 | 28.475 | 295 | 147 | 15 | 77 | 350 | 158 | 409 | 3.53e-13 | 70.9 |
| MS.gene000109.t1 | AT4G08260 | 27.155 | 232 | 92 | 9 | 67 | 298 | 14 | 168 | 3.83e-13 | 68.6 |
| MS.gene000109.t1 | AT5G59220 | 29.310 | 232 | 116 | 11 | 79 | 299 | 148 | 342 | 4.69e-13 | 70.5 |
| MS.gene000109.t1 | AT5G57050 | 28.475 | 295 | 147 | 15 | 77 | 350 | 118 | 369 | 4.93e-13 | 70.5 |
| MS.gene000109.t1 | AT3G05640 | 26.280 | 293 | 165 | 11 | 76 | 351 | 90 | 348 | 5.81e-13 | 70.1 |
| MS.gene000109.t1 | AT3G05640 | 26.280 | 293 | 165 | 11 | 76 | 351 | 90 | 348 | 5.81e-13 | 70.1 |
| MS.gene000109.t1 | AT3G05640 | 26.280 | 293 | 165 | 11 | 76 | 351 | 90 | 348 | 5.81e-13 | 70.1 |
| MS.gene000109.t1 | AT4G03415 | 27.010 | 311 | 169 | 14 | 76 | 356 | 94 | 376 | 6.39e-13 | 70.5 |
| MS.gene000109.t1 | AT4G03415 | 27.010 | 311 | 169 | 14 | 76 | 356 | 94 | 376 | 6.39e-13 | 70.5 |
| MS.gene000109.t1 | AT4G03415 | 27.010 | 311 | 169 | 14 | 76 | 356 | 94 | 376 | 6.39e-13 | 70.5 |
| MS.gene000109.t1 | AT1G22280 | 25.649 | 308 | 153 | 11 | 54 | 350 | 36 | 278 | 1.44e-12 | 68.2 |
| MS.gene000109.t1 | AT1G34750 | 24.675 | 308 | 160 | 12 | 53 | 350 | 34 | 279 | 1.58e-12 | 67.8 |
| MS.gene000109.t1 | AT1G34750 | 24.675 | 308 | 160 | 12 | 53 | 350 | 34 | 279 | 1.58e-12 | 67.8 |
| MS.gene000109.t1 | AT1G34750 | 24.675 | 308 | 160 | 12 | 53 | 350 | 34 | 279 | 1.58e-12 | 67.8 |
| MS.gene000109.t1 | AT1G07430 | 25.000 | 244 | 116 | 7 | 79 | 300 | 157 | 355 | 1.86e-12 | 68.9 |
| MS.gene000109.t1 | AT4G31860 | 25.188 | 266 | 126 | 8 | 79 | 300 | 52 | 288 | 2.93e-12 | 67.4 |
| MS.gene000109.t1 | AT1G72770 | 25.490 | 306 | 166 | 10 | 79 | 359 | 238 | 506 | 4.91e-12 | 67.8 |
| MS.gene000109.t1 | AT1G72770 | 25.490 | 306 | 166 | 10 | 79 | 359 | 238 | 506 | 4.91e-12 | 67.8 |
| MS.gene000109.t1 | AT1G72770 | 25.490 | 306 | 166 | 10 | 79 | 359 | 238 | 506 | 4.91e-12 | 67.8 |
| MS.gene000109.t1 | AT4G31860 | 25.188 | 266 | 126 | 8 | 79 | 300 | 52 | 288 | 5.67e-12 | 67.0 |
| MS.gene000109.t1 | AT2G40860 | 25.559 | 313 | 167 | 14 | 50 | 352 | 294 | 550 | 7.73e-12 | 67.4 |
| MS.gene000109.t1 | AT2G40860 | 25.559 | 313 | 167 | 14 | 50 | 352 | 392 | 648 | 9.32e-12 | 67.0 |
| MS.gene000109.t1 | AT2G40860 | 26.071 | 280 | 161 | 12 | 50 | 318 | 392 | 636 | 1.16e-11 | 66.6 |
| MS.gene000109.t1 | AT4G32950 | 24.603 | 252 | 165 | 10 | 76 | 322 | 69 | 300 | 1.76e-11 | 65.1 |
| MS.gene000109.t1 | AT3G15260 | 25.993 | 277 | 137 | 10 | 79 | 350 | 73 | 286 | 6.54e-11 | 63.2 |
| MS.gene000109.t1 | AT3G15260 | 25.993 | 277 | 137 | 10 | 79 | 350 | 73 | 286 | 6.54e-11 | 63.2 |
Find 79 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATTCATTGAGTTTCT+TGG | 0.151665 | 1.3:-38043229 | None:intergenic |
| TTTGCAGGCATTATGCTCTT+TGG | 0.273523 | 1.3:-38041839 | None:intergenic |
| TCTTCTGATCTCCTCTTTGC+AGG | 0.276200 | 1.3:-38041854 | None:intergenic |
| CATGGAACATGGCGCATTAA+AGG | 0.287974 | 1.3:+38041925 | MS.gene000109:CDS |
| GCAGGGATTGCTAAAGAAAA+TGG | 0.288402 | 1.3:+38041589 | MS.gene000109:intron |
| ACAACAATTTGTGAATCTTC+TGG | 0.288612 | 1.3:-38041895 | None:intergenic |
| AACATCAAACATACAGTTCT+AGG | 0.297305 | 1.3:-38042858 | None:intergenic |
| GTTGTCTTGTCGGTGTTATC+TGG | 0.302162 | 1.3:+38041725 | MS.gene000109:CDS |
| TATTTGCATCTGATGGCCTT+TGG | 0.352622 | 1.3:+38042790 | MS.gene000109:CDS |
| TTAACAAACTTGGAAGCTTC+AGG | 0.358209 | 1.3:-38039871 | None:intergenic |
| ATTTGCATCTGATGGCCTTT+GGG | 0.364124 | 1.3:+38042791 | MS.gene000109:CDS |
| CTATCTCCGAAGATATTATA+AGG | 0.376254 | 1.3:+38041614 | MS.gene000109:CDS |
| ACTCTTGTTCGAAGGAGCTT+TGG | 0.376757 | 1.3:+38041670 | MS.gene000109:CDS |
| AATATAACAAATTTATCGTT+AGG | 0.381864 | 1.3:-38042771 | None:intergenic |
| GAGTGCAAGAAGACTTCTTC+AGG | 0.385692 | 1.3:+38042998 | MS.gene000109:CDS |
| TGTGTCAATAAACCCTTTGA+TGG | 0.386707 | 1.3:-38043180 | None:intergenic |
| CATCTGAAGATGCTCTTGTT+TGG | 0.409250 | 1.3:+38039710 | MS.gene000109:CDS |
| CGTGCTGTGATCGGTTCAAC+TGG | 0.411906 | 1.3:+38041784 | MS.gene000109:CDS |
| GATAACACCGGTCGGCTGAT+AGG | 0.419881 | 1.3:-38042714 | None:intergenic |
| AGCATTCCTTATAATATCTT+CGG | 0.421473 | 1.3:-38041620 | None:intergenic |
| AGATTTGCAGAAGGTTGAAA+AGG | 0.421638 | 1.3:+38043064 | MS.gene000109:CDS |
| GATCATAGTCAAGTTGAAAC+TGG | 0.428878 | 1.3:+38039805 | MS.gene000109:CDS |
| CAAATTGTTGTTATGAAGCA+TGG | 0.440340 | 1.3:+38041907 | MS.gene000109:CDS |
| AAGACTCTTGAACACATAGA+TGG | 0.452607 | 1.3:-38042744 | None:intergenic |
| TGAATGAGGCAGCAAGGAAA+AGG | 0.452832 | 1.3:+38043027 | MS.gene000109:CDS |
| ATGGGTTCCTGTTGTCTTGT+CGG | 0.454155 | 1.3:+38041715 | MS.gene000109:CDS |
| GGAGATTCTCGTGCTGTGAT+CGG | 0.462599 | 1.3:+38041775 | MS.gene000109:CDS |
| GCTGTTTCTGCAACGGAGGA+TGG | 0.464237 | 1.3:+38041640 | MS.gene000109:CDS |
| GATTTGCAGAAGGTTGAAAA+GGG | 0.465611 | 1.3:+38043065 | MS.gene000109:CDS |
| ATACGTGCATAGCGTCGAAC+TGG | 0.469584 | 1.3:-38039649 | None:intergenic |
| ACACTTCATATCGCTAATCT+TGG | 0.471882 | 1.3:+38041754 | MS.gene000109:CDS |
| ACCGGTCGGCTGATAGGATC+AGG | 0.475700 | 1.3:-38042708 | None:intergenic |
| TTTGTTATATTTGCATCTGA+TGG | 0.477307 | 1.3:+38042783 | MS.gene000109:CDS |
| TTCCCGAGTTATCCATCAAA+GGG | 0.477994 | 1.3:+38043168 | MS.gene000109:CDS |
| TCAAGCTAATGAAGTAATTG+AGG | 0.480948 | 1.3:+38039783 | MS.gene000109:CDS |
| CGACCATGAAATGCAAAAGA+AGG | 0.482660 | 1.3:+38043136 | MS.gene000109:CDS |
| GAGATGATCATTAACAAACT+TGG | 0.483803 | 1.3:-38039881 | None:intergenic |
| GATCAGGTATCAAAATCTAT+AGG | 0.484909 | 1.3:+38042624 | MS.gene000109:intron |
| CTTGTCGGTGTTATCTGGAA+AGG | 0.487408 | 1.3:+38041730 | MS.gene000109:CDS |
| GTTGGTGTTTATGATGGTCA+TGG | 0.489495 | 1.3:+38039844 | MS.gene000109:CDS |
| GATAACACCGACAAGACAAC+AGG | 0.498387 | 1.3:-38041722 | None:intergenic |
| TTGGGAACACATGACAAATC+AGG | 0.500543 | 1.3:+38042809 | MS.gene000109:CDS |
| AAAGGGTTTATTGACACAGT+TGG | 0.502286 | 1.3:+38043185 | MS.gene000109:CDS |
| AAGTGGAACCGTGGGAATGA+AGG | 0.504848 | 1.3:-38042684 | None:intergenic |
| CATTTGATCCTTCATTCCCA+CGG | 0.514146 | 1.3:+38042676 | MS.gene000109:CDS |
| TCTTCAGGCTGCTTTGAATG+AGG | 0.522502 | 1.3:+38043013 | MS.gene000109:CDS |
| AAACCCTTTGATGGATAACT+CGG | 0.525953 | 1.3:-38043171 | None:intergenic |
| TTGTCGGTGTTATCTGGAAA+GGG | 0.533139 | 1.3:+38041731 | MS.gene000109:CDS |
| GATTTCTAACTCTTGTTCGA+AGG | 0.535667 | 1.3:+38041662 | MS.gene000109:CDS |
| GAATGAGGCAGCAAGGAAAA+GGG | 0.539011 | 1.3:+38043028 | MS.gene000109:CDS |
| AAAGCCGCTGATAGCAGCAA+TGG | 0.553063 | 1.3:+38041696 | MS.gene000109:CDS |
| ACATCAAACATACAGTTCTA+GGG | 0.557511 | 1.3:-38042857 | None:intergenic |
| GCGCATTAAAGGCATCATCC+AGG | 0.559771 | 1.3:+38041936 | MS.gene000109:CDS |
| GTTCCCGAGTTATCCATCAA+AGG | 0.564305 | 1.3:+38043167 | MS.gene000109:CDS |
| AAGCCGCTGATAGCAGCAAT+GGG | 0.565319 | 1.3:+38041697 | MS.gene000109:CDS |
| GCCTGATCCTATCAGCCGAC+CGG | 0.565479 | 1.3:+38042707 | MS.gene000109:CDS |
| AAGGAATGCTGTTTCTGCAA+CGG | 0.570457 | 1.3:+38041633 | MS.gene000109:CDS |
| AGATGCATATTTGAAGCGGC+CGG | 0.571705 | 1.3:+38042647 | MS.gene000109:CDS |
| GGCTGATAGGATCAGGCAAG+TGG | 0.577398 | 1.3:-38042701 | None:intergenic |
| GAGATATAAAGATTTGCAGA+AGG | 0.584024 | 1.3:+38043055 | MS.gene000109:CDS |
| CTGCTTTGAATGAGGCAGCA+AGG | 0.594845 | 1.3:+38043021 | MS.gene000109:CDS |
| GAAGGATCAAATGAGAACTC+CGG | 0.604037 | 1.3:-38042666 | None:intergenic |
| AACCCTTTGATGGATAACTC+GGG | 0.610793 | 1.3:-38043170 | None:intergenic |
| GAATGCTGTTTCTGCAACGG+AGG | 0.611369 | 1.3:+38041636 | MS.gene000109:CDS |
| GGATCAGGCAAGTGGAACCG+TGG | 0.616029 | 1.3:-38042693 | None:intergenic |
| ATTAGCTTGAACAACAGCAA+AGG | 0.619106 | 1.3:-38039770 | None:intergenic |
| CACCACAAGAGTGTTTCTCA+AGG | 0.621992 | 1.3:-38039741 | None:intergenic |
| GATCAGGCAAGTGGAACCGT+GGG | 0.624799 | 1.3:-38042692 | None:intergenic |
| GATTTGTCATGTGTTCCCAA+AGG | 0.627452 | 1.3:-38042806 | None:intergenic |
| GACCTTGAGAAACACTCTTG+TGG | 0.632718 | 1.3:+38039739 | MS.gene000109:CDS |
| TTGTTATGAAGCATGGAACA+TGG | 0.636401 | 1.3:+38041914 | MS.gene000109:CDS |
| TAGGAGATGCATATTTGAAG+CGG | 0.637442 | 1.3:+38042643 | MS.gene000109:CDS |
| AGAGCATAATGCCTGCAAAG+AGG | 0.641485 | 1.3:+38041843 | MS.gene000109:CDS |
| GATGGTTCTGCTGATAACAC+CGG | 0.667990 | 1.3:-38042726 | None:intergenic |
| GAACCCATTGCTGCTATCAG+CGG | 0.676524 | 1.3:-38041700 | None:intergenic |
| GGTGTTTATGATGGTCATGG+TGG | 0.696441 | 1.3:+38039847 | MS.gene000109:CDS |
| CAACCACTGTGATATCATCG+TGG | 0.720113 | 1.3:-38043103 | None:intergenic |
| GTTCTGCTGATAACACCGGT+CGG | 0.727197 | 1.3:-38042722 | None:intergenic |
| TTTCCACGATGATATCACAG+TGG | 0.728364 | 1.3:+38043100 | MS.gene000109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTATAATAATACAATT+TGG | + | chr1.3:38041143-38041162 | MS.gene000109:intron | 10.0% |
| !!! | AACATTTTTTTTTAAAAACT+CGG | - | chr1.3:38040845-38040864 | None:intergenic | 10.0% |
| !!! | ATATATATTTTGTTGAAAAT+TGG | + | chr1.3:38040364-38040383 | MS.gene000109:intron | 10.0% |
| !!! | TATATATTTTGTTGAAAATT+GGG | + | chr1.3:38040365-38040384 | MS.gene000109:intron | 10.0% |
| !!! | TTGTTTTGTATTAAATAATA+TGG | + | chr1.3:38040420-38040439 | MS.gene000109:intron | 10.0% |
| !!! | TTTTTTTAATGTTGAATAAA+TGG | + | chr1.3:38040183-38040202 | MS.gene000109:intron | 10.0% |
| !! | AATATAACAAATTTATCGTT+AGG | - | chr1.3:38042774-38042793 | None:intergenic | 15.0% |
| !! | TTGTATTAAATAATATGGTA+TGG | + | chr1.3:38040425-38040444 | MS.gene000109:intron | 15.0% |
| !!! | TAAACTTCTAAAATTACTTA+TGG | - | chr1.3:38041219-38041238 | None:intergenic | 15.0% |
| !!! | TATTTTAGATCTTATATGAA+AGG | + | chr1.3:38040943-38040962 | MS.gene000109:intron | 15.0% |
| !!! | TTTATTTTCTCTTATTTCAA+TGG | + | chr1.3:38041417-38041436 | MS.gene000109:intron | 15.0% |
| !! | ACTAAAAATGTAATTATTGC+TGG | - | chr1.3:38041496-38041515 | None:intergenic | 20.0% |
| !! | CAAAATATTTAACCATGTAA+TGG | - | chr1.3:38042115-38042134 | None:intergenic | 20.0% |
| !! | TATTTAATAAAGAAGTGACA+TGG | - | chr1.3:38042443-38042462 | None:intergenic | 20.0% |
| !! | TTTCCTTATTGTATTTGATT+TGG | + | chr1.3:38042200-38042219 | MS.gene000109:intron | 20.0% |
| !!! | AACAAATTGTTTTCTAAGAA+AGG | + | chr1.3:38040138-38040157 | MS.gene000109:intron | 20.0% |
| !!! | ATGAATCTTGAATTATTTTG+AGG | + | chr1.3:38042386-38042405 | MS.gene000109:intron | 20.0% |
| !!! | ATTCTCTCTTATATCAATTT+TGG | + | chr1.3:38040712-38040731 | MS.gene000109:intron | 20.0% |
| !!! | TATACGGTTTTTTCTTAAAA+TGG | + | chr1.3:38042078-38042097 | MS.gene000109:intron | 20.0% |
| !!! | TGTTTATTTCTTTAACATCA+GGG | + | chr1.3:38042975-38042994 | MS.gene000109:intron | 20.0% |
| !!! | TTGATCAATGTTTGATATTT+TGG | + | chr1.3:38040494-38040513 | MS.gene000109:intron | 20.0% |
| !!! | TTTTTTAAAAACTCGGTAAT+CGG | - | chr1.3:38040838-38040857 | None:intergenic | 20.0% |
| ! | AACTGTTCAACCAATTAATT+GGG | - | chr1.3:38040299-38040318 | None:intergenic | 25.0% |
| ! | AATCGAATTTGATGTTAAAG+AGG | - | chr1.3:38040695-38040714 | None:intergenic | 25.0% |
| ! | AGACCAAATCAAATACAATA+AGG | - | chr1.3:38042206-38042225 | None:intergenic | 25.0% |
| ! | AGCATTCCTTATAATATCTT+CGG | - | chr1.3:38041623-38041642 | None:intergenic | 25.0% |
| ! | AGGATTAATAATAGTGAATC+AGG | - | chr1.3:38042355-38042374 | None:intergenic | 25.0% |
| ! | ATAAGTTTCGATTCACAATT+TGG | + | chr1.3:38042502-38042521 | MS.gene000109:intron | 25.0% |
| ! | ATTGGTTGAACAGTTAAATT+TGG | + | chr1.3:38040304-38040323 | MS.gene000109:intron | 25.0% |
| ! | GAAATTCATGTTCAAAACAT+AGG | - | chr1.3:38042303-38042322 | None:intergenic | 25.0% |
| ! | TAACTGTTCAACCAATTAAT+TGG | - | chr1.3:38040300-38040319 | None:intergenic | 25.0% |
| ! | TAATTCAAGATTCATTGCAA+TGG | - | chr1.3:38042381-38042400 | None:intergenic | 25.0% |
| ! | TTGAACATCCTAAACTTAAA+GGG | - | chr1.3:38041377-38041396 | None:intergenic | 25.0% |
| ! | TTTGAACATCCTAAACTTAA+AGG | - | chr1.3:38041378-38041397 | None:intergenic | 25.0% |
| !! | CTGTTTATTTCTTTAACATC+AGG | + | chr1.3:38042974-38042993 | MS.gene000109:intron | 25.0% |
| !! | GATCGATTTATAAGAAGTTA+AGG | + | chr1.3:38041544-38041563 | MS.gene000109:intron | 25.0% |
| !! | GTTTAGGATGTTCAAAAAAT+TGG | + | chr1.3:38041382-38041401 | MS.gene000109:intron | 25.0% |
| !! | GTTTATTTCTTTAACATCAG+GGG | + | chr1.3:38042976-38042995 | MS.gene000109:intron | 25.0% |
| !! | TGGAAACTTCTAAATTTTGA+TGG | - | chr1.3:38043212-38043231 | None:intergenic | 25.0% |
| !! | TTTCTCTTATTTCAATGGAT+TGG | + | chr1.3:38041422-38041441 | MS.gene000109:intron | 25.0% |
| !! | TTTGTTATATTTGCATCTGA+TGG | + | chr1.3:38042783-38042802 | MS.gene000109:CDS | 25.0% |
| !!! | AGCTCTTTTTTGTTGTTATT+TGG | + | chr1.3:38040540-38040559 | MS.gene000109:intron | 25.0% |
| !!! | CTTTTTTGTTGTTATTTGGA+TGG | + | chr1.3:38040544-38040563 | MS.gene000109:intron | 25.0% |
| !!! | TCTCTTATATCAATTTTGGT+GGG | + | chr1.3:38040716-38040735 | MS.gene000109:intron | 25.0% |
| AAAACATTGCTTTCATGACT+AGG | + | chr1.3:38040337-38040356 | MS.gene000109:intron | 30.0% | |
| AAACATAATTGTAGGATCCT+AGG | - | chr1.3:38042908-38042927 | None:intergenic | 30.0% | |
| AAATTCACTATGCACATCTT+TGG | + | chr1.3:38041014-38041033 | MS.gene000109:intron | 30.0% | |
| AACATCAAACATACAGTTCT+AGG | - | chr1.3:38042861-38042880 | None:intergenic | 30.0% | |
| AAGCAAAAACCAAACGATAA+AGG | - | chr1.3:38042016-38042035 | None:intergenic | 30.0% | |
| ACAACAATTTGTGAATCTTC+TGG | - | chr1.3:38041898-38041917 | None:intergenic | 30.0% | |
| ACATCAAACATACAGTTCTA+GGG | - | chr1.3:38042860-38042879 | None:intergenic | 30.0% | |
| ATGCATAACTACAGGAAATT+TGG | + | chr1.3:38041039-38041058 | MS.gene000109:intron | 30.0% | |
| ATGTGTTGAATTTCATTGCA+GGG | + | chr1.3:38041572-38041591 | MS.gene000109:intron | 30.0% | |
| ATTAATTTCTCCAGAGAAAG+TGG | - | chr1.3:38041970-38041989 | None:intergenic | 30.0% | |
| CTATCTCCGAAGATATTATA+AGG | + | chr1.3:38041614-38041633 | MS.gene000109:CDS | 30.0% | |
| GAACTTATCTCCTAAAACAA+AGG | - | chr1.3:38041319-38041338 | None:intergenic | 30.0% | |
| GAGATATAAAGATTTGCAGA+AGG | + | chr1.3:38043055-38043074 | MS.gene000109:CDS | 30.0% | |
| GAGATGATCATTAACAAACT+TGG | - | chr1.3:38039884-38039903 | None:intergenic | 30.0% | |
| GATCAGGTATCAAAATCTAT+AGG | + | chr1.3:38042624-38042643 | MS.gene000109:intron | 30.0% | |
| TATGTGTTGAATTTCATTGC+AGG | + | chr1.3:38041571-38041590 | MS.gene000109:intron | 30.0% | |
| TCAAGCTAATGAAGTAATTG+AGG | + | chr1.3:38039783-38039802 | MS.gene000109:CDS | 30.0% | |
| TGGTTCGTGAATATAGAAAA+AGG | - | chr1.3:38042146-38042165 | None:intergenic | 30.0% | |
| TTTATGTTGCCTTTATCGTT+TGG | + | chr1.3:38042004-38042023 | MS.gene000109:intron | 30.0% | |
| ! | CAAATTGTTGTTATGAAGCA+TGG | + | chr1.3:38041907-38041926 | MS.gene000109:CDS | 30.0% |
| ! | CTCTCTTATATCAATTTTGG+TGG | + | chr1.3:38040715-38040734 | MS.gene000109:intron | 30.0% |
| ! | TCTTATATGAAAGGTTTGCT+TGG | + | chr1.3:38040952-38040971 | MS.gene000109:intron | 30.0% |
| ! | TTGTGTTTCCCTTTAAGTTT+AGG | + | chr1.3:38041366-38041385 | MS.gene000109:intron | 30.0% |
| !! | GTTTGAAATGCATGTTGTTT+TGG | + | chr1.3:38042547-38042566 | MS.gene000109:intron | 30.0% |
| !! | GTTTTTGTTGGTGTTTATGA+TGG | + | chr1.3:38039838-38039857 | MS.gene000109:CDS | 30.0% |
| !!! | TTTACACAAGCCTTTGTTTT+AGG | + | chr1.3:38041306-38041325 | MS.gene000109:intron | 30.0% |
| AAAACTCGGTAATCGGTATT+TGG | - | chr1.3:38040831-38040850 | None:intergenic | 35.0% | |
| AAAGGGTTTATTGACACAGT+TGG | + | chr1.3:38043185-38043204 | MS.gene000109:CDS | 35.0% | |
| AAGACTCTTGAACACATAGA+TGG | - | chr1.3:38042747-38042766 | None:intergenic | 35.0% | |
| AAGATTCATTGCAATGGATC+AGG | - | chr1.3:38042375-38042394 | None:intergenic | 35.0% | |
| AAGGGAGAAGTTGGAAAATT+TGG | + | chr1.3:38040987-38041006 | MS.gene000109:intron | 35.0% | |
| ACACTTCATATCGCTAATCT+TGG | + | chr1.3:38041754-38041773 | MS.gene000109:CDS | 35.0% | |
| AGATTTGCAGAAGGTTGAAA+AGG | + | chr1.3:38043064-38043083 | MS.gene000109:CDS | 35.0% | |
| ATGGTCATAGCTTATGTAGA+TGG | - | chr1.3:38041200-38041219 | None:intergenic | 35.0% | |
| CGATTCACAATTTGGAAAGT+AGG | + | chr1.3:38042510-38042529 | MS.gene000109:intron | 35.0% | |
| GAGAAAGTGGTATAAAAACC+TGG | - | chr1.3:38041957-38041976 | None:intergenic | 35.0% | |
| GATTTCTAACTCTTGTTCGA+AGG | + | chr1.3:38041662-38041681 | MS.gene000109:CDS | 35.0% | |
| GATTTGCAGAAGGTTGAAAA+GGG | + | chr1.3:38043065-38043084 | MS.gene000109:CDS | 35.0% | |
| GCACGCTAAAACATAATTGT+AGG | - | chr1.3:38042916-38042935 | None:intergenic | 35.0% | |
| GTGTTTCAACTTCCATTACA+TGG | + | chr1.3:38042100-38042119 | MS.gene000109:intron | 35.0% | |
| TAAAACATCTTAGACCGAGT+AGG | + | chr1.3:38040208-38040227 | MS.gene000109:intron | 35.0% | |
| TAGGAGATGCATATTTGAAG+CGG | + | chr1.3:38042643-38042662 | MS.gene000109:CDS | 35.0% | |
| TCCATTGTGTTGTGTCTATA+CGG | + | chr1.3:38042062-38042081 | MS.gene000109:intron | 35.0% | |
| TCTAAGAAAGGCTAGTATGA+AGG | + | chr1.3:38040150-38040169 | MS.gene000109:intron | 35.0% | |
| TGTGTCAATAAACCCTTTGA+TGG | - | chr1.3:38043183-38043202 | None:intergenic | 35.0% | |
| TGTTCAACCAATTAATTGGG+CGG | - | chr1.3:38040296-38040315 | None:intergenic | 35.0% | |
| TTAACAAACTTGGAAGCTTC+AGG | - | chr1.3:38039874-38039893 | None:intergenic | 35.0% | |
| TTGTTATGAAGCATGGAACA+TGG | + | chr1.3:38041914-38041933 | MS.gene000109:CDS | 35.0% | |
| ! | AAACCCTTTGATGGATAACT+CGG | - | chr1.3:38043174-38043193 | None:intergenic | 35.0% |
| ! | ATTAGCTTGAACAACAGCAA+AGG | - | chr1.3:38039773-38039792 | None:intergenic | 35.0% |
| ! | CATCCTTCTTTTGCATTTCA+TGG | - | chr1.3:38043142-38043161 | None:intergenic | 35.0% |
| ! | GGTTTTTATACCACTTTCTC+TGG | + | chr1.3:38041957-38041976 | MS.gene000109:intron | 35.0% |
| !! | GATCATAGTCAAGTTGAAAC+TGG | + | chr1.3:38039805-38039824 | MS.gene000109:CDS | 35.0% |
| AAATGAATGAGAGCCAAAGG+GGG | + | chr1.3:38041166-38041185 | MS.gene000109:intron | 40.0% | |
| AACAAACATGTGTCAGAGAC+CGG | - | chr1.3:38039984-38040003 | None:intergenic | 40.0% | |
| ACCGTATAGACACAACACAA+TGG | - | chr1.3:38042066-38042085 | None:intergenic | 40.0% | |
| AGCTATGCTCCGACTTTAAA+TGG | + | chr1.3:38040753-38040772 | MS.gene000109:intron | 40.0% | |
| ATTTGCATCTGATGGCCTTT+GGG | + | chr1.3:38042791-38042810 | MS.gene000109:CDS | 40.0% | |
| CATAATTGTAGGATCCTAGG+TGG | - | chr1.3:38042905-38042924 | None:intergenic | 40.0% | |
| CATCTGAAGATGCTCTTGTT+TGG | + | chr1.3:38039710-38039729 | MS.gene000109:CDS | 40.0% | |
| CATTTGATCCTTCATTCCCA+CGG | + | chr1.3:38042676-38042695 | MS.gene000109:CDS | 40.0% | |
| CCAAATGCAGCTACAAACTA+TGG | - | chr1.3:38042166-38042185 | None:intergenic | 40.0% | |
| CGACCATGAAATGCAAAAGA+AGG | + | chr1.3:38043136-38043155 | MS.gene000109:CDS | 40.0% | |
| CTTTGGCTATGCATAACTAC+AGG | + | chr1.3:38041031-38041050 | MS.gene000109:intron | 40.0% | |
| GAAATGAATGAGAGCCAAAG+GGG | + | chr1.3:38041165-38041184 | MS.gene000109:intron | 40.0% | |
| GAAGGATCAAATGAGAACTC+CGG | - | chr1.3:38042669-38042688 | None:intergenic | 40.0% | |
| GATCAAACCGCCCAATTAAT+TGG | + | chr1.3:38040286-38040305 | MS.gene000109:intron | 40.0% | |
| GATTTGTCATGTGTTCCCAA+AGG | - | chr1.3:38042809-38042828 | None:intergenic | 40.0% | |
| GCAGGGATTGCTAAAGAAAA+TGG | + | chr1.3:38041589-38041608 | MS.gene000109:intron | 40.0% | |
| GGAAATGAATGAGAGCCAAA+GGG | + | chr1.3:38041164-38041183 | MS.gene000109:intron | 40.0% | |
| TATTTGCATCTGATGGCCTT+TGG | + | chr1.3:38042790-38042809 | MS.gene000109:CDS | 40.0% | |
| TGGAAATGAATGAGAGCCAA+AGG | + | chr1.3:38041163-38041182 | MS.gene000109:intron | 40.0% | |
| TTCCCGAGTTATCCATCAAA+GGG | + | chr1.3:38043168-38043187 | MS.gene000109:CDS | 40.0% | |
| TTCTTGTTCACACCACAACT+GGG | + | chr1.3:38042602-38042621 | MS.gene000109:intron | 40.0% | |
| TTGGGAACACATGACAAATC+AGG | + | chr1.3:38042809-38042828 | MS.gene000109:CDS | 40.0% | |
| TTTCCACGATGATATCACAG+TGG | + | chr1.3:38043100-38043119 | MS.gene000109:CDS | 40.0% | |
| TTTCTTGTTCACACCACAAC+TGG | + | chr1.3:38042601-38042620 | MS.gene000109:intron | 40.0% | |
| TTTGCAGGCATTATGCTCTT+TGG | - | chr1.3:38041842-38041861 | None:intergenic | 40.0% | |
| ! | AACCCTTTGATGGATAACTC+GGG | - | chr1.3:38043173-38043192 | None:intergenic | 40.0% |
| ! | CCATAGTTTGTAGCTGCATT+TGG | + | chr1.3:38042163-38042182 | MS.gene000109:intron | 40.0% |
| ! | CTTCATAGGTGTCATAGACA+TGG | + | chr1.3:38040115-38040134 | MS.gene000109:intron | 40.0% |
| ! | GTTGGTGTTTATGATGGTCA+TGG | + | chr1.3:38039844-38039863 | MS.gene000109:CDS | 40.0% |
| !! | AAGGAATGCTGTTTCTGCAA+CGG | + | chr1.3:38041633-38041652 | MS.gene000109:CDS | 40.0% |
| !! | ATCATCTTTTTCGTCCACCT+AGG | + | chr1.3:38042888-38042907 | MS.gene000109:intron | 40.0% |
| !! | TGTCTGTTTCTGTGCTTCAT+AGG | + | chr1.3:38040101-38040120 | MS.gene000109:intron | 40.0% |
| !! | TTGTCGGTGTTATCTGGAAA+GGG | + | chr1.3:38041731-38041750 | MS.gene000109:CDS | 40.0% |
| !!! | GGTTCTGATGCTGTTTTTGT+TGG | + | chr1.3:38039826-38039845 | MS.gene000109:CDS | 40.0% |
| AATGAATGAGAGCCAAAGGG+GGG | + | chr1.3:38041167-38041186 | MS.gene000109:intron | 45.0% | |
| ACTCTTGTTCGAAGGAGCTT+TGG | + | chr1.3:38041670-38041689 | MS.gene000109:CDS | 45.0% | |
| AGAGCATAATGCCTGCAAAG+AGG | + | chr1.3:38041843-38041862 | MS.gene000109:CDS | 45.0% | |
| ATCTGTGTCTCAGACATGTC+TGG | + | chr1.3:38040070-38040089 | MS.gene000109:intron | 45.0% | |
| ATGGGTTCCTGTTGTCTTGT+CGG | + | chr1.3:38041715-38041734 | MS.gene000109:CDS | 45.0% | |
| CAACCACTGTGATATCATCG+TGG | - | chr1.3:38043106-38043125 | None:intergenic | 45.0% | |
| CATGGAACATGGCGCATTAA+AGG | + | chr1.3:38041925-38041944 | MS.gene000109:CDS | 45.0% | |
| CCGAGTAGGTTTATGAGTCA+CGG | + | chr1.3:38040222-38040241 | MS.gene000109:intron | 45.0% | |
| CCGTGACTCATAAACCTACT+CGG | - | chr1.3:38040225-38040244 | None:intergenic | 45.0% | |
| CTATCACGCTATCTGATCGA+AGG | + | chr1.3:38039953-38039972 | MS.gene000109:intron | 45.0% | |
| GAATGAGGCAGCAAGGAAAA+GGG | + | chr1.3:38043028-38043047 | MS.gene000109:CDS | 45.0% | |
| GACCTTGAGAAACACTCTTG+TGG | + | chr1.3:38039739-38039758 | MS.gene000109:CDS | 45.0% | |
| GACGATGTGATTGGACTCAT+CGG | + | chr1.3:38040788-38040807 | MS.gene000109:intron | 45.0% | |
| GAGTGCAAGAAGACTTCTTC+AGG | + | chr1.3:38042998-38043017 | MS.gene000109:CDS | 45.0% | |
| GATAACACCGACAAGACAAC+AGG | - | chr1.3:38041725-38041744 | None:intergenic | 45.0% | |
| GGTGTTTATGATGGTCATGG+TGG | + | chr1.3:38039847-38039866 | MS.gene000109:CDS | 45.0% | |
| GTTATTTGGATGGCCCTTTG+TGG | + | chr1.3:38040554-38040573 | MS.gene000109:intron | 45.0% | |
| GTTCCCGAGTTATCCATCAA+AGG | + | chr1.3:38043167-38043186 | MS.gene000109:CDS | 45.0% | |
| TCTTCTGATCTCCTCTTTGC+AGG | - | chr1.3:38041857-38041876 | None:intergenic | 45.0% | |
| TGAATGAGGCAGCAAGGAAA+AGG | + | chr1.3:38043027-38043046 | MS.gene000109:CDS | 45.0% | |
| TTGATACCTGATCCCAGTTG+TGG | - | chr1.3:38042617-38042636 | None:intergenic | 45.0% | |
| ! | AGATGCATATTTGAAGCGGC+CGG | + | chr1.3:38042647-38042666 | MS.gene000109:CDS | 45.0% |
| ! | AGGTTTGCTTGGTTGTGTAG+TGG | + | chr1.3:38040963-38040982 | MS.gene000109:intron | 45.0% |
| ! | GATGGTTCTGCTGATAACAC+CGG | - | chr1.3:38042729-38042748 | None:intergenic | 45.0% |
| ! | GCTTGGTTGTGTAGTGGAAA+GGG | + | chr1.3:38040969-38040988 | MS.gene000109:intron | 45.0% |
| ! | TCTTCAGGCTGCTTTGAATG+AGG | + | chr1.3:38043013-38043032 | MS.gene000109:CDS | 45.0% |
| ! | TGCTTGGTTGTGTAGTGGAA+AGG | + | chr1.3:38040968-38040987 | MS.gene000109:intron | 45.0% |
| ! | TGTAGTGGAAAGGGAGAAGT+TGG | + | chr1.3:38040978-38040997 | MS.gene000109:intron | 45.0% |
| !! | CACCACAAGAGTGTTTCTCA+AGG | - | chr1.3:38039744-38039763 | None:intergenic | 45.0% |
| !! | CTTGTCGGTGTTATCTGGAA+AGG | + | chr1.3:38041730-38041749 | MS.gene000109:CDS | 45.0% |
| !! | GTTGTCTTGTCGGTGTTATC+TGG | + | chr1.3:38041725-38041744 | MS.gene000109:CDS | 45.0% |
| !!! | AAATATATCATATATTTTTT+TGG | + | chr1.3:38042458-38042477 | MS.gene000109:intron | 5.0% |
| AAAGCCGCTGATAGCAGCAA+TGG | + | chr1.3:38041696-38041715 | MS.gene000109:CDS | 50.0% | |
| AAGCCGCTGATAGCAGCAAT+GGG | + | chr1.3:38041697-38041716 | MS.gene000109:CDS | 50.0% | |
| AAGTGGAACCGTGGGAATGA+AGG | - | chr1.3:38042687-38042706 | None:intergenic | 50.0% | |
| AATCACATCGTCCACTCGTG+GGG | - | chr1.3:38040780-38040799 | None:intergenic | 50.0% | |
| CAATCACATCGTCCACTCGT+GGG | - | chr1.3:38040781-38040800 | None:intergenic | 50.0% | |
| GAACCCATTGCTGCTATCAG+CGG | - | chr1.3:38041703-38041722 | None:intergenic | 50.0% | |
| GGAGATTCTCGTGCTGTGAT+CGG | + | chr1.3:38041775-38041794 | MS.gene000109:CDS | 50.0% | |
| GTTCTGCTGATAACACCGGT+CGG | - | chr1.3:38042725-38042744 | None:intergenic | 50.0% | |
| TTCACACCACAACTGGGATC+AGG | + | chr1.3:38042608-38042627 | MS.gene000109:intron | 50.0% | |
| ! | ATACGTGCATAGCGTCGAAC+TGG | - | chr1.3:38039652-38039671 | None:intergenic | 50.0% |
| ! | CTGCTTTGAATGAGGCAGCA+AGG | + | chr1.3:38043021-38043040 | MS.gene000109:CDS | 50.0% |
| ! | TATCTGATCGAAGGCGTGTC+CGG | + | chr1.3:38039962-38039981 | MS.gene000109:intron | 50.0% |
| ! | TCGTGGGGGCCATTTAAAGT+CGG | - | chr1.3:38040765-38040784 | None:intergenic | 50.0% |
| !! | GAATGCTGTTTCTGCAACGG+AGG | + | chr1.3:38041636-38041655 | MS.gene000109:CDS | 50.0% |
| !! | GCGCATTAAAGGCATCATCC+AGG | + | chr1.3:38041936-38041955 | MS.gene000109:CDS | 50.0% |
| ATCACATCGTCCACTCGTGG+GGG | - | chr1.3:38040779-38040798 | None:intergenic | 55.0% | |
| ATGAGAGCCAAAGGGGGGAT+TGG | + | chr1.3:38041172-38041191 | MS.gene000109:intron | 55.0% | |
| CAGCCAGCCTGATCCACAAA+GGG | - | chr1.3:38040570-38040589 | None:intergenic | 55.0% | |
| CCAATCACATCGTCCACTCG+TGG | - | chr1.3:38040782-38040801 | None:intergenic | 55.0% | |
| CCACGAGTGGACGATGTGAT+TGG | + | chr1.3:38040779-38040798 | MS.gene000109:intron | 55.0% | |
| CTTTAAATGGCCCCCACGAG+TGG | + | chr1.3:38040766-38040785 | MS.gene000109:intron | 55.0% | |
| GATAACACCGGTCGGCTGAT+AGG | - | chr1.3:38042717-38042736 | None:intergenic | 55.0% | |
| GATCAGGCAAGTGGAACCGT+GGG | - | chr1.3:38042695-38042714 | None:intergenic | 55.0% | |
| GATGGTACCAATCCCCCCTT+TGG | - | chr1.3:38041182-38041201 | None:intergenic | 55.0% | |
| GGCTGATAGGATCAGGCAAG+TGG | - | chr1.3:38042704-38042723 | None:intergenic | 55.0% | |
| TGGATGGCCCTTTGTGGATC+AGG | + | chr1.3:38040560-38040579 | MS.gene000109:intron | 55.0% | |
| ! | CGTGCTGTGATCGGTTCAAC+TGG | + | chr1.3:38041784-38041803 | MS.gene000109:CDS | 55.0% |
| !! | GCTGTTTCTGCAACGGAGGA+TGG | + | chr1.3:38041640-38041659 | MS.gene000109:CDS | 55.0% |
| !! | GGCTGGCTGGTGGATTTGTT+TGG | + | chr1.3:38040581-38040600 | MS.gene000109:intron | 55.0% |
| ACCGGTCGGCTGATAGGATC+AGG | - | chr1.3:38042711-38042730 | None:intergenic | 60.0% | |
| CCAGCCAGCCTGATCCACAA+AGG | - | chr1.3:38040571-38040590 | None:intergenic | 60.0% | |
| CCTTTGTGGATCAGGCTGGC+TGG | + | chr1.3:38040568-38040587 | MS.gene000109:intron | 60.0% | |
| GCCTGATCCTATCAGCCGAC+CGG | + | chr1.3:38042707-38042726 | MS.gene000109:CDS | 60.0% | |
| GGATCAGGCAAGTGGAACCG+TGG | - | chr1.3:38042696-38042715 | None:intergenic | 60.0% | |
| TGGCCCTTTGTGGATCAGGC+TGG | + | chr1.3:38040564-38040583 | MS.gene000109:intron | 60.0% | |
| ! | TTGTGGATCAGGCTGGCTGG+TGG | + | chr1.3:38040571-38040590 | MS.gene000109:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 38039607 | 38043244 | 38039607 | ID=MS.gene000109 |
| chr1.3 | mRNA | 38039607 | 38043244 | 38039607 | ID=MS.gene000109.t1;Parent=MS.gene000109 |
| chr1.3 | exon | 38039607 | 38039919 | 38039607 | ID=MS.gene000109.t1.exon1;Parent=MS.gene000109.t1 |
| chr1.3 | CDS | 38039607 | 38039919 | 38039607 | ID=cds.MS.gene000109.t1;Parent=MS.gene000109.t1 |
| chr1.3 | exon | 38041593 | 38041957 | 38041593 | ID=MS.gene000109.t1.exon2;Parent=MS.gene000109.t1 |
| chr1.3 | CDS | 38041593 | 38041957 | 38041593 | ID=cds.MS.gene000109.t1;Parent=MS.gene000109.t1 |
| chr1.3 | exon | 38042630 | 38042866 | 38042630 | ID=MS.gene000109.t1.exon3;Parent=MS.gene000109.t1 |
| chr1.3 | CDS | 38042630 | 38042866 | 38042630 | ID=cds.MS.gene000109.t1;Parent=MS.gene000109.t1 |
| chr1.3 | exon | 38042996 | 38043244 | 38042996 | ID=MS.gene000109.t1.exon4;Parent=MS.gene000109.t1 |
| chr1.3 | CDS | 38042996 | 38043244 | 38042996 | ID=cds.MS.gene000109.t1;Parent=MS.gene000109.t1 |
| Gene Sequence |
| Protein sequence |
