Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000110.t1 | XP_013467673.1 | 97.6 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 1.60E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000110.t1 | Q8S9M1 | 67.5 | 277 | 85 | 3 | 23 | 295 | 24 | 299 | 3.0e-98 | 359.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000110.t1 | I3SSW0 | 97.6 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 1.2e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000110 | MS.gene37079 | PPI |
| MS.gene000110 | MS.gene034498 | PPI |
| MS.gene000110 | MS.gene37276 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000110.t1 | MTR_1g054070 | 97.627 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 0.0 | 590 |
| MS.gene000110.t1 | MTR_1g054070 | 95.254 | 295 | 7 | 1 | 1 | 295 | 3 | 290 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000110.t1 | AT2G42130 | 67.986 | 278 | 82 | 4 | 23 | 295 | 24 | 299 | 2.37e-132 | 377 |
| MS.gene000110.t1 | AT3G58010 | 68.852 | 244 | 73 | 2 | 39 | 280 | 48 | 290 | 4.99e-126 | 362 |
| MS.gene000110.t1 | AT3G58010 | 68.852 | 244 | 73 | 2 | 39 | 280 | 48 | 290 | 4.99e-126 | 362 |
| MS.gene000110.t1 | AT2G42130 | 66.667 | 273 | 66 | 4 | 46 | 295 | 1 | 271 | 2.38e-125 | 358 |
| MS.gene000110.t1 | AT2G42130 | 70.445 | 247 | 67 | 3 | 23 | 264 | 24 | 269 | 8.74e-122 | 350 |
| MS.gene000110.t1 | AT2G42130 | 67.227 | 238 | 72 | 3 | 23 | 255 | 24 | 260 | 1.94e-109 | 318 |
| MS.gene000110.t1 | AT2G42130 | 71.569 | 204 | 57 | 1 | 92 | 295 | 2 | 204 | 8.99e-106 | 306 |
Find 68 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCCTTCATCTTCTTCA+TGG | 0.258486 | 1.3:-37969256 | MS.gene000110:CDS |
| TGGTTTGGTCCCGGCTCTCC+AGG | 0.323449 | 1.3:-37967903 | MS.gene000110:CDS |
| TCGAGTCTCGTTAAAACTTC+TGG | 0.337043 | 1.3:+37965508 | None:intergenic |
| CGATGCATCGCCGTCATCCC+TGG | 0.349723 | 1.3:-37965488 | MS.gene000110:CDS |
| TGGTTCTGATGCAGATAATA+AGG | 0.361190 | 1.3:-37965546 | MS.gene000110:intron |
| AACACCTAGCTTTCATAATC+TGG | 0.372388 | 1.3:+37965454 | None:intergenic |
| GACAAATTAGCTAAACTTGA+AGG | 0.384219 | 1.3:+37967713 | None:intergenic |
| AGAGTACCAGATCAGCTTAA+AGG | 0.398637 | 1.3:-37967177 | MS.gene000110:CDS |
| GTCTCTTACGTCGTGGGCCG+AGG | 0.401298 | 1.3:+37968029 | None:intergenic |
| CACCCTTTCTAGAAGGTAGA+TGG | 0.403986 | 1.3:-37967935 | MS.gene000110:CDS |
| AGATGGAACTTTGAGTGGTT+TGG | 0.404432 | 1.3:-37967918 | MS.gene000110:CDS |
| GATGTGAATGAAAGGATAAC+TGG | 0.412353 | 1.3:-37968074 | MS.gene000110:CDS |
| CGCAAACAACCCTGGAGAGC+CGG | 0.413785 | 1.3:+37967893 | None:intergenic |
| AGCTGCTTATGCTAAGGAAA+TGG | 0.416143 | 1.3:-37969156 | MS.gene000110:CDS |
| TACGTCGTGGGCCGAGGTGT+TGG | 0.418397 | 1.3:+37968035 | None:intergenic |
| TACAGGTCACCCTTTCTAGA+AGG | 0.420622 | 1.3:-37967942 | MS.gene000110:intron |
| AACTTTGAGTGGTTTGGTCC+CGG | 0.437249 | 1.3:-37967912 | MS.gene000110:CDS |
| GTTCCATCTACCTTCTAGAA+AGG | 0.438758 | 1.3:+37967932 | None:intergenic |
| CTCCAGGGTTGTTTGCGGCT+AGG | 0.445478 | 1.3:-37967887 | MS.gene000110:CDS |
| TGGCCCCTCCACAGTTAACT+TGG | 0.446873 | 1.3:+37967260 | None:intergenic |
| AGTGCACCTTTAAGCTGATC+TGG | 0.469556 | 1.3:+37967171 | None:intergenic |
| TATTGTGTCACCAACAGTCT+TGG | 0.471270 | 1.3:-37967205 | MS.gene000110:CDS |
| GCAAACAACCCTGGAGAGCC+GGG | 0.475524 | 1.3:+37967894 | None:intergenic |
| TTCCATCTACCTTCTAGAAA+GGG | 0.488079 | 1.3:+37967933 | None:intergenic |
| GCTTAAAGGTGCACTTGGGC+AGG | 0.488898 | 1.3:-37967163 | MS.gene000110:CDS |
| ATGGATGTCTTTATCAAGGA+TGG | 0.497103 | 1.3:-37967686 | MS.gene000110:CDS |
| GGTTTGGTCCCGGCTCTCCA+GGG | 0.497726 | 1.3:-37967902 | MS.gene000110:CDS |
| TTACGTGATGCTCTCGCCGA+TGG | 0.498253 | 1.3:-37967108 | MS.gene000110:CDS |
| TACTCCTCTTTCATTCTAAG+TGG | 0.499661 | 1.3:+37967240 | None:intergenic |
| TGAAAGAGGAGTATGTGGAA+GGG | 0.508535 | 1.3:-37967230 | MS.gene000110:CDS |
| GATCAGCTTAAAGGTGCACT+TGG | 0.509335 | 1.3:-37967168 | MS.gene000110:CDS |
| GAAGCGATTCTTTAGCAGAA+AGG | 0.509807 | 1.3:+37969129 | None:intergenic |
| ATGAAAGAGGAGTATGTGGA+AGG | 0.518572 | 1.3:-37967231 | MS.gene000110:CDS |
| GCTATGGTTCAAGTTCAAAC+TGG | 0.521173 | 1.3:-37969185 | MS.gene000110:CDS |
| CGGCTCTCCAGGGTTGTTTG+CGG | 0.524440 | 1.3:-37967892 | MS.gene000110:CDS |
| CAGATAATAAGGAACACAGC+TGG | 0.524577 | 1.3:-37965535 | MS.gene000110:CDS |
| AATCTGGACTTGATTCTCCC+AGG | 0.529092 | 1.3:+37965470 | None:intergenic |
| AAGTCCAGATTATGAAAGCT+AGG | 0.531868 | 1.3:-37965458 | None:intergenic |
| ATTTCCTTAGCATAAGCAGC+TGG | 0.533156 | 1.3:+37969158 | None:intergenic |
| TCAACCAAGTTAACTGTGGA+GGG | 0.536332 | 1.3:-37967264 | MS.gene000110:CDS |
| ATCCTAGCCGCAAACAACCC+TGG | 0.540466 | 1.3:+37967885 | None:intergenic |
| AAAGAATTGATGTGAATGAA+AGG | 0.540601 | 1.3:-37968082 | MS.gene000110:CDS |
| AAGGTAGATGGAACTTTGAG+TGG | 0.542411 | 1.3:-37967923 | MS.gene000110:CDS |
| CTTGATTCTCCCAGGGATGA+CGG | 0.547658 | 1.3:+37965478 | None:intergenic |
| GATGCATCGCCGTCATCCCT+GGG | 0.548574 | 1.3:-37965487 | MS.gene000110:CDS |
| TAGAATGAAAGAGGAGTATG+TGG | 0.549259 | 1.3:-37967235 | MS.gene000110:CDS |
| TACGTGATGCTCTCGCCGAT+GGG | 0.553971 | 1.3:-37967107 | MS.gene000110:CDS |
| ATCTGGACTTGATTCTCCCA+GGG | 0.556575 | 1.3:+37965471 | None:intergenic |
| AGAGCATCACGTAAAGGTAC+GGG | 0.563086 | 1.3:+37967117 | None:intergenic |
| ACTTTCCATGAAGAAGATGA+AGG | 0.563489 | 1.3:+37969251 | None:intergenic |
| CTCAACCAAGTTAACTGTGG+AGG | 0.564278 | 1.3:-37967265 | MS.gene000110:CDS |
| GAGAGCATCACGTAAAGGTA+CGG | 0.569225 | 1.3:+37967116 | None:intergenic |
| GCGTGGTTGCTGTAGAGCTA+TGG | 0.572072 | 1.3:-37969201 | MS.gene000110:CDS |
| AGATAATAAGGAACACAGCT+GGG | 0.572812 | 1.3:-37965534 | MS.gene000110:CDS |
| TGCACCAGCTGCTTATGCTA+AGG | 0.573385 | 1.3:-37969162 | MS.gene000110:CDS |
| CATGATTTCTTATCTCGATG+AGG | 0.578981 | 1.3:-37966448 | MS.gene000110:CDS |
| TCGGCGAGAGCATCACGTAA+AGG | 0.589648 | 1.3:+37967111 | None:intergenic |
| ACTCTGTCTTCCAAGACTGT+TGG | 0.591239 | 1.3:+37967195 | None:intergenic |
| GGGGCCACTTAGAATGAAAG+AGG | 0.591481 | 1.3:-37967244 | MS.gene000110:CDS |
| CGCATCACGTGGCAGAAGCG+TGG | 0.611910 | 1.3:-37969218 | MS.gene000110:CDS |
| TTTCAGTTTAAGGATGCAGG+TGG | 0.612143 | 1.3:-37968143 | MS.gene000110:intron |
| TTTGTGATTGTTGAAATACA+AGG | 0.627714 | 1.3:+37969284 | None:intergenic |
| ATCAGCTTAAAGGTGCACTT+GGG | 0.627941 | 1.3:-37967167 | MS.gene000110:CDS |
| CAACCAAGTTAACTGTGGAG+GGG | 0.634924 | 1.3:-37967263 | MS.gene000110:CDS |
| TCTCTCAACCAAGTTAACTG+TGG | 0.636429 | 1.3:-37967268 | MS.gene000110:CDS |
| AAAGGATAACTGGTCTTGAG+CGG | 0.638722 | 1.3:-37968064 | MS.gene000110:CDS |
| TTTCAACTTCACGCATCACG+TGG | 0.646833 | 1.3:-37969229 | MS.gene000110:CDS |
| AGCGGCTCAATCCAACACCT+CGG | 0.670774 | 1.3:-37968046 | MS.gene000110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAATCTGTTAAATAT+TGG | - | chr1.3:37967774-37967793 | MS.gene000110:intron | 10.0% |
| !! | ATTAACAAAAATTAAAACAA+TGG | + | chr1.3:37965733-37965752 | None:intergenic | 10.0% |
| !! | TTAACAAAAATTAAAACAAT+GGG | + | chr1.3:37965732-37965751 | None:intergenic | 10.0% |
| !!! | AATTTTAAACAAAATATGAA+AGG | + | chr1.3:37967451-37967470 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTTCATTTTAAT+AGG | - | chr1.3:37969143-37969162 | MS.gene000110:CDS | 10.0% |
| !!! | TTTGTTAATTTATTTAGTTT+TGG | - | chr1.3:37965744-37965763 | MS.gene000110:intron | 10.0% |
| !! | TAACAAAAATTAAAACAATG+GGG | + | chr1.3:37965731-37965750 | None:intergenic | 15.0% |
| !! | TCTATAATTATTTACTGAAT+TGG | + | chr1.3:37968370-37968389 | None:intergenic | 15.0% |
| !!! | AAACACATTATTTTTAAACT+CGG | - | chr1.3:37967131-37967150 | MS.gene000110:CDS | 15.0% |
| !!! | GTTTTATATATTTCATGAAA+TGG | - | chr1.3:37967928-37967947 | MS.gene000110:CDS | 15.0% |
| !! | AATTTACTTAAGTGTATGTT+TGG | - | chr1.3:37965809-37965828 | MS.gene000110:intron | 20.0% |
| !! | ATATACATTCATGTAAAAGT+GGG | + | chr1.3:37966105-37966124 | None:intergenic | 20.0% |
| !! | ATTATAACCCTTGTATAAAT+TGG | + | chr1.3:37966251-37966270 | None:intergenic | 20.0% |
| !! | ATTGAAAAAACATTTATGCA+TGG | + | chr1.3:37967359-37967378 | None:intergenic | 20.0% |
| !! | ATTGAAACCAATTTATACAA+GGG | - | chr1.3:37966241-37966260 | MS.gene000110:intron | 20.0% |
| !! | GAAAAAAATTGAAAAGCAAT+AGG | - | chr1.3:37969105-37969124 | MS.gene000110:intron | 20.0% |
| !! | GAGATAATTATAGGTAAAAA+TGG | + | chr1.3:37969181-37969200 | None:intergenic | 20.0% |
| !! | TAATTAAATTATTGCGTGTT+TGG | + | chr1.3:37966219-37966238 | None:intergenic | 20.0% |
| !! | TATATACATTCATGTAAAAG+TGG | + | chr1.3:37966106-37966125 | None:intergenic | 20.0% |
| !! | TTATTCAAAAAGCTTAGAAA+TGG | + | chr1.3:37966782-37966801 | None:intergenic | 20.0% |
| !!! | CGGCAAATATATAATTTTAT+TGG | + | chr1.3:37969016-37969035 | None:intergenic | 20.0% |
| !!! | CTCTTTTACATAATGATTTT+CGG | - | chr1.3:37967222-37967241 | MS.gene000110:CDS | 20.0% |
| !!! | TAAGAAATAATGTACACTTT+TGG | - | chr1.3:37968139-37968158 | MS.gene000110:CDS | 20.0% |
| !!! | TGAAATAATTTTACTTTCTG+TGG | + | chr1.3:37967261-37967280 | None:intergenic | 20.0% |
| !!! | TTCAAATTGATTTTAGTAAG+TGG | + | chr1.3:37968914-37968933 | None:intergenic | 20.0% |
| !!! | TTTAGCTAATTTGTCAAAAA+TGG | - | chr1.3:37967071-37967090 | MS.gene000110:intron | 20.0% |
| !!! | TTTTCAACAACTTCAAAATA+TGG | - | chr1.3:37968732-37968751 | MS.gene000110:intron | 20.0% |
| ! | AAAAATGGATGTCTTTATCA+AGG | - | chr1.3:37967086-37967105 | MS.gene000110:intron | 25.0% |
| ! | AAAGAATTGATGTGAATGAA+AGG | - | chr1.3:37966694-37966713 | MS.gene000110:intron | 25.0% |
| ! | AACAACTTCAAAATATGGAA+GGG | - | chr1.3:37968737-37968756 | MS.gene000110:intron | 25.0% |
| ! | AATAACAGTTACAAGTAATG+AGG | - | chr1.3:37966289-37966308 | MS.gene000110:intron | 25.0% |
| ! | AATTCTCATACACATATATG+TGG | - | chr1.3:37967999-37968018 | MS.gene000110:intron | 25.0% |
| ! | ATAAATTTAGGAGGAAATCT+AGG | + | chr1.3:37968948-37968967 | None:intergenic | 25.0% |
| ! | ATTCTCATACACATATATGT+GGG | - | chr1.3:37968000-37968019 | MS.gene000110:intron | 25.0% |
| ! | ATTGTGATATGATAGCTAAA+AGG | - | chr1.3:37966313-37966332 | MS.gene000110:intron | 25.0% |
| ! | CATAACTACATGTTAAAACA+AGG | + | chr1.3:37967320-37967339 | None:intergenic | 25.0% |
| ! | CATTGAAACCAATTTATACA+AGG | - | chr1.3:37966240-37966259 | MS.gene000110:intron | 25.0% |
| ! | CCTATAATTATCTCAAATCA+TGG | - | chr1.3:37969187-37969206 | MS.gene000110:CDS | 25.0% |
| ! | CGAAAATCATTATGTAAAAG+AGG | + | chr1.3:37967224-37967243 | None:intergenic | 25.0% |
| ! | CTAGATCAAGCTAAATTTAA+GGG | + | chr1.3:37966994-37967013 | None:intergenic | 25.0% |
| ! | TAATATCTGAATGATTATGC+TGG | - | chr1.3:37969210-37969229 | MS.gene000110:CDS | 25.0% |
| ! | TGAAGCAAATAATGAGAAAA+GGG | - | chr1.3:37965767-37965786 | MS.gene000110:intron | 25.0% |
| ! | TGTAAATATCTACCAACATA+AGG | + | chr1.3:37968102-37968121 | None:intergenic | 25.0% |
| ! | TTATTTCAACGTTTCTTGTT+AGG | - | chr1.3:37967273-37967292 | MS.gene000110:CDS | 25.0% |
| ! | TTTCATCCAGCTATAAATTT+AGG | + | chr1.3:37968960-37968979 | None:intergenic | 25.0% |
| ! | TTTGTGATTGTTGAAATACA+AGG | + | chr1.3:37965495-37965514 | None:intergenic | 25.0% |
| !! | AGCTTTTTGAATAAGATGTA+AGG | - | chr1.3:37966788-37966807 | MS.gene000110:intron | 25.0% |
| !! | CCATGATTTGAGATAATTAT+AGG | + | chr1.3:37969190-37969209 | None:intergenic | 25.0% |
| !! | GCTTTTTGAATAAGATGTAA+GGG | - | chr1.3:37966789-37966808 | MS.gene000110:intron | 25.0% |
| !!! | AACTTCGTTTTATTCTTGTT+GGG | + | chr1.3:37966533-37966552 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr1.3:37965871-37965890 | MS.gene000110:intron | 25.0% |
| !!! | CTTGTTTTAACATGTAGTTA+TGG | - | chr1.3:37967318-37967337 | MS.gene000110:intron | 25.0% |
| AACAATCCGAAGAAAAACTT+TGG | + | chr1.3:37966960-37966979 | None:intergenic | 30.0% | |
| AACTACATGTTAAAACAAGG+TGG | + | chr1.3:37967317-37967336 | None:intergenic | 30.0% | |
| ACATTCTACTCACTTTCAAT+CGG | - | chr1.3:37966141-37966160 | MS.gene000110:intron | 30.0% | |
| AGAAAAACTTTGGACTAACA+AGG | + | chr1.3:37966950-37966969 | None:intergenic | 30.0% | |
| AGCATGTATAAGAGAATTGA+GGG | + | chr1.3:37969056-37969075 | None:intergenic | 30.0% | |
| AGTATATTTGAGTACAAGCT+TGG | + | chr1.3:37966597-37966616 | None:intergenic | 30.0% | |
| ATGTGAGAATGATAGAATTG+AGG | + | chr1.3:37968847-37968866 | None:intergenic | 30.0% | |
| CAAAGAAATGAAGCAGAAAA+GGG | + | chr1.3:37965695-37965714 | None:intergenic | 30.0% | |
| CAACAACTTCAAAATATGGA+AGG | - | chr1.3:37968736-37968755 | MS.gene000110:intron | 30.0% | |
| CCAAAAAAGAAAGTAACTTG+TGG | - | chr1.3:37968029-37968048 | MS.gene000110:intron | 30.0% | |
| GAACTAACTACACAAATTGT+TGG | - | chr1.3:37966335-37966354 | MS.gene000110:intron | 30.0% | |
| GAAGCAAATAATGAGAAAAG+GGG | - | chr1.3:37965768-37965787 | MS.gene000110:intron | 30.0% | |
| GACAAATTAGCTAAACTTGA+AGG | + | chr1.3:37967066-37967085 | None:intergenic | 30.0% | |
| GCTAGATCAAGCTAAATTTA+AGG | + | chr1.3:37966995-37967014 | None:intergenic | 30.0% | |
| GCTTCATTTCTTTGGATTAT+TGG | - | chr1.3:37965701-37965720 | MS.gene000110:intron | 30.0% | |
| GTACTCAAATATACTTACTC+TGG | - | chr1.3:37966602-37966621 | MS.gene000110:intron | 30.0% | |
| GTGAAGCAAATAATGAGAAA+AGG | - | chr1.3:37965766-37965785 | MS.gene000110:intron | 30.0% | |
| TAACTGTTGCATTATCAGAT+TGG | - | chr1.3:37968508-37968527 | MS.gene000110:intron | 30.0% | |
| TAGCATGTATAAGAGAATTG+AGG | + | chr1.3:37969057-37969076 | None:intergenic | 30.0% | |
| TCAAGTTAGATTCATATGCA+TGG | + | chr1.3:37968425-37968444 | None:intergenic | 30.0% | |
| TCAATTCTCTTATACATGCT+AGG | - | chr1.3:37969056-37969075 | MS.gene000110:intron | 30.0% | |
| TTTCCTCCTAAATTTATAGC+TGG | - | chr1.3:37968951-37968970 | MS.gene000110:intron | 30.0% | |
| ! | GTTAGTCCAAAGTTTTTCTT+CGG | - | chr1.3:37966951-37966970 | MS.gene000110:intron | 30.0% |
| ! | TGATGTCATTTCATGTTTGA+AGG | - | chr1.3:37968284-37968303 | MS.gene000110:intron | 30.0% |
| !! | ACTTCGTTTTATTCTTGTTG+GGG | + | chr1.3:37966532-37966551 | None:intergenic | 30.0% |
| !! | ATTTTGATGAACTATGAGTG+TGG | - | chr1.3:37965923-37965942 | MS.gene000110:intron | 30.0% |
| !! | CAACTTCGTTTTATTCTTGT+TGG | + | chr1.3:37966534-37966553 | None:intergenic | 30.0% |
| !! | GTTGACTTGAAATGAACTAA+AGG | - | chr1.3:37966383-37966402 | MS.gene000110:intron | 30.0% |
| !! | TGAAATGGATTTTCTCTAGT+TGG | - | chr1.3:37967943-37967962 | MS.gene000110:intron | 30.0% |
| !! | TGAGGCAAAATTGATTTTAG+AGG | - | chr1.3:37965845-37965864 | MS.gene000110:intron | 30.0% |
| !!! | CCACAAGTTACTTTCTTTTT+TGG | + | chr1.3:37968032-37968051 | None:intergenic | 30.0% |
| AAAATCGCCTAGGGTTTAAT+AGG | - | chr1.3:37968807-37968826 | MS.gene000110:intron | 35.0% | |
| AACAACAATCGAGTAAAGAC+CGG | + | chr1.3:37966491-37966510 | None:intergenic | 35.0% | |
| ACATTCATGTAAAAGTGGGT+TGG | + | chr1.3:37966101-37966120 | None:intergenic | 35.0% | |
| ACTTTCCATGAAGAAGATGA+AGG | + | chr1.3:37965528-37965547 | None:intergenic | 35.0% | |
| AGATAATAAGGAACACAGCT+GGG | - | chr1.3:37969242-37969261 | MS.gene000110:CDS | 35.0% | |
| AGGTACAACAAACTCTTTCT+AGG | + | chr1.3:37967431-37967450 | None:intergenic | 35.0% | |
| ATATCTAGCAATTTCAAGCC+AGG | + | chr1.3:37968060-37968079 | None:intergenic | 35.0% | |
| ATATGCATGGTAATCTACGA+AGG | + | chr1.3:37968412-37968431 | None:intergenic | 35.0% | |
| ATGCTAGGTTTGAATGACAT+GGG | - | chr1.3:37969071-37969090 | MS.gene000110:intron | 35.0% | |
| ATGGATGTCTTTATCAAGGA+TGG | - | chr1.3:37967090-37967109 | MS.gene000110:intron | 35.0% | |
| CAAACTCTTTCTAGGCATTA+TGG | + | chr1.3:37967423-37967442 | None:intergenic | 35.0% | |
| CAATTCCTTCATCTTCTTCA+TGG | - | chr1.3:37965520-37965539 | MS.gene000110:CDS | 35.0% | |
| CAATTGTAGAAGCAGAATGA+CGG | + | chr1.3:37966056-37966075 | None:intergenic | 35.0% | |
| CACGAAACAACAGAATAAAC+AGG | + | chr1.3:37967827-37967846 | None:intergenic | 35.0% | |
| CAGTAAGAAATGCCTTATGT+TGG | - | chr1.3:37968087-37968106 | MS.gene000110:CDS | 35.0% | |
| CATCCAGCTATAAATTTAGG+AGG | + | chr1.3:37968957-37968976 | None:intergenic | 35.0% | |
| CATGATTTCTTATCTCGATG+AGG | - | chr1.3:37968328-37968347 | MS.gene000110:intron | 35.0% | |
| CCAAAGAAATGAAGCAGAAA+AGG | + | chr1.3:37965696-37965715 | None:intergenic | 35.0% | |
| CCAATAAACTCGATGCTTTA+AGG | - | chr1.3:37966426-37966445 | MS.gene000110:intron | 35.0% | |
| CCTGCAAATATATAAAGCAC+CGG | + | chr1.3:37967037-37967056 | None:intergenic | 35.0% | |
| GAGGTGAATATAGAAATCAG+TGG | + | chr1.3:37967719-37967738 | None:intergenic | 35.0% | |
| GATGTGAATGAAAGGATAAC+TGG | - | chr1.3:37966702-37966721 | MS.gene000110:intron | 35.0% | |
| TACTCCTCTTTCATTCTAAG+TGG | + | chr1.3:37967539-37967558 | None:intergenic | 35.0% | |
| TATAGCTGGATGAAAGTTCT+AGG | - | chr1.3:37968965-37968984 | MS.gene000110:intron | 35.0% | |
| TGAGAATGAAAAATCGCCTA+GGG | - | chr1.3:37968798-37968817 | MS.gene000110:intron | 35.0% | |
| TGCATTATCAGATTGGAATG+TGG | - | chr1.3:37968515-37968534 | MS.gene000110:intron | 35.0% | |
| TGTGTGCATGTTTGATATCA+CGG | - | chr1.3:37966023-37966042 | MS.gene000110:intron | 35.0% | |
| TTCATGCTCTTTATTGCTAC+AGG | - | chr1.3:37966817-37966836 | MS.gene000110:intron | 35.0% | |
| ! | AAGTCAGAGAACATTTTCAG+AGG | + | chr1.3:37967738-37967757 | None:intergenic | 35.0% |
| ! | CCTTTTCTGCTTCATTTCTT+TGG | - | chr1.3:37965693-37965712 | MS.gene000110:intron | 35.0% |
| ! | CTGCAAATATATAAAGCACC+GGG | + | chr1.3:37967036-37967055 | None:intergenic | 35.0% |
| ! | GGAGACATCTTTTCAGTTTA+AGG | - | chr1.3:37966623-37966642 | MS.gene000110:intron | 35.0% |
| ! | GTAAGACTTTCTGGAAATCA+AGG | + | chr1.3:37968606-37968625 | None:intergenic | 35.0% |
| ! | TAGAATGAAAGAGGAGTATG+TGG | - | chr1.3:37967541-37967560 | MS.gene000110:intron | 35.0% |
| ! | TAGTTCATTTCAAGTCAACG+TGG | + | chr1.3:37966382-37966401 | None:intergenic | 35.0% |
| ! | TCTTTTCAGTTTAAGGATGC+AGG | - | chr1.3:37966630-37966649 | MS.gene000110:intron | 35.0% |
| ! | TGTCATTTCATGTTTGAAGG+TGG | - | chr1.3:37968287-37968306 | MS.gene000110:intron | 35.0% |
| ! | TTCCATCTACCTTCTAGAAA+GGG | + | chr1.3:37966846-37966865 | None:intergenic | 35.0% |
| !! | CCTTAAAGCATCGAGTTTAT+TGG | + | chr1.3:37966429-37966448 | None:intergenic | 35.0% |
| !! | TGGTTCTGATGCAGATAATA+AGG | - | chr1.3:37969230-37969249 | MS.gene000110:CDS | 35.0% |
| !! | TTTGGTTCTACTCTAAGATG+AGG | - | chr1.3:37965827-37965846 | MS.gene000110:intron | 35.0% |
| !! | TTTTTAGTCTCTTACGTCGT+GGG | + | chr1.3:37966756-37966775 | None:intergenic | 35.0% |
| !!! | AACTCGATGCTTTAAGGTTT+TGG | - | chr1.3:37966432-37966451 | MS.gene000110:intron | 35.0% |
| !!! | ACTCGATGCTTTAAGGTTTT+GGG | - | chr1.3:37966433-37966452 | MS.gene000110:intron | 35.0% |
| AAATATGTGCGCACAAAGAC+AGG | - | chr1.3:37968189-37968208 | MS.gene000110:intron | 40.0% | |
| AAGAGAATTGAGGGCAACAA+CGG | + | chr1.3:37969047-37969066 | None:intergenic | 40.0% | |
| AAGGTAGATGGAACTTTGAG+TGG | - | chr1.3:37966853-37966872 | MS.gene000110:intron | 40.0% | |
| AATGACATGGGAACATGGAA+AGG | - | chr1.3:37969083-37969102 | MS.gene000110:intron | 40.0% | |
| ACCATGCGCTGCTAATATTA+GGG | - | chr1.3:37967801-37967820 | MS.gene000110:intron | 40.0% | |
| ACGTGGAACTAACTACACAA+TGG | + | chr1.3:37966365-37966384 | None:intergenic | 40.0% | |
| AGATGGAACTTTGAGTGGTT+TGG | - | chr1.3:37966858-37966877 | MS.gene000110:intron | 40.0% | |
| AGCTGCTTATGCTAAGGAAA+TGG | - | chr1.3:37965620-37965639 | MS.gene000110:intron | 40.0% | |
| ATCAGTGGTAGCTTACTTAG+TGG | + | chr1.3:37967704-37967723 | None:intergenic | 40.0% | |
| ATGAGTGTGGTTAAGCATCA+AGG | - | chr1.3:37965936-37965955 | MS.gene000110:intron | 40.0% | |
| ATTTCCTTAGCATAAGCAGC+TGG | + | chr1.3:37965621-37965640 | None:intergenic | 40.0% | |
| CAGAAAGTGAAACTACTCAG+AGG | + | chr1.3:37968705-37968724 | None:intergenic | 40.0% | |
| CAGATAATAAGGAACACAGC+TGG | - | chr1.3:37969241-37969260 | MS.gene000110:CDS | 40.0% | |
| CATGCTAGGTTTGAATGACA+TGG | - | chr1.3:37969070-37969089 | MS.gene000110:intron | 40.0% | |
| CCGGTGCTTTATATATTTGC+AGG | - | chr1.3:37967034-37967053 | MS.gene000110:intron | 40.0% | |
| CTCTGAGTAGTTTCACTTTC+TGG | - | chr1.3:37968703-37968722 | MS.gene000110:intron | 40.0% | |
| CTGAGAATGAAAAATCGCCT+AGG | - | chr1.3:37968797-37968816 | MS.gene000110:intron | 40.0% | |
| GAAGCGATTCTTTAGCAGAA+AGG | + | chr1.3:37965650-37965669 | None:intergenic | 40.0% | |
| GTTCTCTGACTTAACTGTTC+TGG | - | chr1.3:37967746-37967765 | MS.gene000110:intron | 40.0% | |
| GTTTGAATGACATGGGAACA+TGG | - | chr1.3:37969078-37969097 | MS.gene000110:intron | 40.0% | |
| TAGGGTTTAATAGGTCTCGA+GGG | - | chr1.3:37968816-37968835 | MS.gene000110:intron | 40.0% | |
| TATTGTGTCACCAACAGTCT+TGG | - | chr1.3:37967571-37967590 | MS.gene000110:intron | 40.0% | |
| TCAACCAAGTTAACTGTGGA+GGG | - | chr1.3:37967512-37967531 | MS.gene000110:intron | 40.0% | |
| TCGAGTCTCGTTAAAACTTC+TGG | + | chr1.3:37969271-37969290 | None:intergenic | 40.0% | |
| TCTCTCAACCAAGTTAACTG+TGG | - | chr1.3:37967508-37967527 | MS.gene000110:intron | 40.0% | |
| TCTTACACTGTCACGTGTAA+AGG | - | chr1.3:37968620-37968639 | MS.gene000110:intron | 40.0% | |
| TGCACTAAGAAACGCATGTA+TGG | - | chr1.3:37968464-37968483 | MS.gene000110:intron | 40.0% | |
| TTTCAGTTTAAGGATGCAGG+TGG | - | chr1.3:37966633-37966652 | MS.gene000110:intron | 40.0% | |
| ! | AGAGTACCAGATCAGCTTAA+AGG | - | chr1.3:37967599-37967618 | MS.gene000110:intron | 40.0% |
| ! | ATCAGCTTAAAGGTGCACTT+GGG | - | chr1.3:37967609-37967628 | MS.gene000110:intron | 40.0% |
| ! | ATGAAAGAGGAGTATGTGGA+AGG | - | chr1.3:37967545-37967564 | MS.gene000110:intron | 40.0% |
| ! | CTTTGAGTTACAATGCTTCC+CGG | - | chr1.3:37967015-37967034 | MS.gene000110:intron | 40.0% |
| ! | GCTATGGTTCAAGTTCAAAC+TGG | - | chr1.3:37965591-37965610 | MS.gene000110:intron | 40.0% |
| ! | GTGATGTACGTTACACCTTT+TGG | - | chr1.3:37968564-37968583 | MS.gene000110:intron | 40.0% |
| ! | GTTCCATCTACCTTCTAGAA+AGG | + | chr1.3:37966847-37966866 | None:intergenic | 40.0% |
| ! | TAGTGGAACTTTTAGCCCAT+CGG | + | chr1.3:37967687-37967706 | None:intergenic | 40.0% |
| ! | TATGGTTGCAACTGGTGTTT+TGG | - | chr1.3:37968482-37968501 | MS.gene000110:intron | 40.0% |
| ! | TGAAAGAGGAGTATGTGGAA+GGG | - | chr1.3:37967546-37967565 | MS.gene000110:intron | 40.0% |
| ! | TTACACCTTTTGGTCATGCT+GGG | - | chr1.3:37968574-37968593 | MS.gene000110:intron | 40.0% |
| ! | TTTTCCTCACTGTCACAGTT+TGG | - | chr1.3:37968764-37968783 | MS.gene000110:intron | 40.0% |
| !! | AAAGGATAACTGGTCTTGAG+CGG | - | chr1.3:37966712-37966731 | MS.gene000110:intron | 40.0% |
| !!! | GTTTTGAGAGCTTAGTCTCT+GGG | - | chr1.3:37966655-37966674 | MS.gene000110:intron | 40.0% |
| !!! | GTTTTTAGTCTCTTACGTCG+TGG | + | chr1.3:37966757-37966776 | None:intergenic | 40.0% |
| AACGCATGTATGGTTGCAAC+TGG | - | chr1.3:37968474-37968493 | MS.gene000110:intron | 45.0% | |
| AATCTGGACTTGATTCTCCC+AGG | + | chr1.3:37969309-37969328 | None:intergenic | 45.0% | |
| ACTCTGTCTTCCAAGACTGT+TGG | + | chr1.3:37967584-37967603 | None:intergenic | 45.0% | |
| AGGGTTTAATAGGTCTCGAG+GGG | - | chr1.3:37968817-37968836 | MS.gene000110:intron | 45.0% | |
| AGTGCACCTTTAAGCTGATC+TGG | + | chr1.3:37967608-37967627 | None:intergenic | 45.0% | |
| ATCTGGACTTGATTCTCCCA+GGG | + | chr1.3:37969308-37969327 | None:intergenic | 45.0% | |
| CAACCAAGTTAACTGTGGAG+GGG | - | chr1.3:37967513-37967532 | MS.gene000110:intron | 45.0% | |
| CACCATGCGCTGCTAATATT+AGG | - | chr1.3:37967800-37967819 | MS.gene000110:intron | 45.0% | |
| CATAACCCAGCATGACCAAA+AGG | + | chr1.3:37968582-37968601 | None:intergenic | 45.0% | |
| CGTGACAGTGTAAGACTTTC+TGG | + | chr1.3:37968615-37968634 | None:intergenic | 45.0% | |
| CTAGGGTTTAATAGGTCTCG+AGG | - | chr1.3:37968815-37968834 | MS.gene000110:intron | 45.0% | |
| CTCAACCAAGTTAACTGTGG+AGG | - | chr1.3:37967511-37967530 | MS.gene000110:intron | 45.0% | |
| CTCGAGACCTATTAAACCCT+AGG | + | chr1.3:37968817-37968836 | None:intergenic | 45.0% | |
| GAAGCAGAAAAGGGAATGAG+TGG | + | chr1.3:37965686-37965705 | None:intergenic | 45.0% | |
| TACAGGTCACCCTTTCTAGA+AGG | - | chr1.3:37966834-37966853 | MS.gene000110:intron | 45.0% | |
| TATTCTTGTTGGGGAGTCCA+GGG | + | chr1.3:37966523-37966542 | None:intergenic | 45.0% | |
| TCATCCAAACTGTGACAGTG+AGG | + | chr1.3:37968771-37968790 | None:intergenic | 45.0% | |
| TTATTCTTGTTGGGGAGTCC+AGG | + | chr1.3:37966524-37966543 | None:intergenic | 45.0% | |
| TTTAATAGGTCTCGAGGGGA+AGG | - | chr1.3:37968821-37968840 | MS.gene000110:intron | 45.0% | |
| TTTCAACTTCACGCATCACG+TGG | - | chr1.3:37965547-37965566 | MS.gene000110:intron | 45.0% | |
| ! | AAGTAACTTGTGGCTTAGCC+TGG | - | chr1.3:37968039-37968058 | MS.gene000110:CDS | 45.0% |
| ! | AGAGCATCACGTAAAGGTAC+GGG | + | chr1.3:37967662-37967681 | None:intergenic | 45.0% |
| ! | CACCCTTTCTAGAAGGTAGA+TGG | - | chr1.3:37966841-37966860 | MS.gene000110:intron | 45.0% |
| ! | GATCAGCTTAAAGGTGCACT+TGG | - | chr1.3:37967608-37967627 | MS.gene000110:intron | 45.0% |
| ! | GGGCAACAACGGATTTACAT+CGG | + | chr1.3:37969036-37969055 | None:intergenic | 45.0% |
| ! | GTTACACCTTTTGGTCATGC+TGG | - | chr1.3:37968573-37968592 | MS.gene000110:intron | 45.0% |
| ! | TTGTTGTTCCTAATGCTCCC+TGG | - | chr1.3:37966503-37966522 | MS.gene000110:intron | 45.0% |
| !! | AACTTTGAGTGGTTTGGTCC+CGG | - | chr1.3:37966864-37966883 | MS.gene000110:intron | 45.0% |
| !! | AGCTGGATGAAAGTTCTAGG+TGG | - | chr1.3:37968968-37968987 | MS.gene000110:intron | 45.0% |
| !! | CGGGAAGCATTGTAACTCAA+AGG | + | chr1.3:37967017-37967036 | None:intergenic | 45.0% |
| !! | GAGAGCATCACGTAAAGGTA+CGG | + | chr1.3:37967663-37967682 | None:intergenic | 45.0% |
| !!! | CGATGCTTTAAGGTTTTGGG+AGG | - | chr1.3:37966436-37966455 | MS.gene000110:intron | 45.0% |
| !!! | GGTTTTGAGAGCTTAGTCTC+TGG | - | chr1.3:37966654-37966673 | MS.gene000110:intron | 45.0% |
| ACCAAGAGACTTGGACCCAA+CGG | + | chr1.3:37966464-37966483 | None:intergenic | 50.0% | |
| CTTGATTCTCCCAGGGATGA+CGG | + | chr1.3:37969301-37969320 | None:intergenic | 50.0% | |
| GCCCTAATATTAGCAGCGCA+TGG | + | chr1.3:37967805-37967824 | None:intergenic | 50.0% | |
| GGGGCCACTTAGAATGAAAG+AGG | - | chr1.3:37967532-37967551 | MS.gene000110:intron | 50.0% | |
| TGCACCAGCTGCTTATGCTA+AGG | - | chr1.3:37965614-37965633 | MS.gene000110:intron | 50.0% | |
| ! | TCCAAGTCTCTTGGTGGTTC+CGG | - | chr1.3:37966469-37966488 | MS.gene000110:CDS | 50.0% |
| ACCGGAACCACCAAGAGACT+TGG | + | chr1.3:37966473-37966492 | None:intergenic | 55.0% | |
| AGCGGCTCAATCCAACACCT+CGG | - | chr1.3:37966730-37966749 | MS.gene000110:intron | 55.0% | |
| ATCCTAGCCGCAAACAACCC+TGG | + | chr1.3:37966894-37966913 | None:intergenic | 55.0% | |
| GCGTGGTTGCTGTAGAGCTA+TGG | - | chr1.3:37965575-37965594 | MS.gene000110:intron | 55.0% | |
| GTTGGGTCCAAGTCTCTTGG+TGG | - | chr1.3:37966463-37966482 | MS.gene000110:CDS | 55.0% | |
| TACGTGATGCTCTCGCCGAT+GGG | - | chr1.3:37967669-37967688 | MS.gene000110:CDS | 55.0% | |
| TGGCCCCTCCACAGTTAACT+TGG | + | chr1.3:37967519-37967538 | None:intergenic | 55.0% | |
| TTACGTGATGCTCTCGCCGA+TGG | - | chr1.3:37967668-37967687 | MS.gene000110:CDS | 55.0% | |
| ! | GCTTAAAGGTGCACTTGGGC+AGG | - | chr1.3:37967613-37967632 | MS.gene000110:intron | 55.0% |
| !! | TCGGCGAGAGCATCACGTAA+AGG | + | chr1.3:37967668-37967687 | None:intergenic | 55.0% |
| !!! | AAGGTTTTGGGAGGAGCCGT+TGG | - | chr1.3:37966445-37966464 | MS.gene000110:CDS | 55.0% |
| !!! | AGGTTTTGGGAGGAGCCGTT+GGG | - | chr1.3:37966446-37966465 | MS.gene000110:CDS | 55.0% |
| CGCAAACAACCCTGGAGAGC+CGG | + | chr1.3:37966886-37966905 | None:intergenic | 60.0% | |
| CGGCTCTCCAGGGTTGTTTG+CGG | - | chr1.3:37966884-37966903 | MS.gene000110:intron | 60.0% | |
| CTCCAGGGTTGTTTGCGGCT+AGG | - | chr1.3:37966889-37966908 | MS.gene000110:intron | 60.0% | |
| GATGCATCGCCGTCATCCCT+GGG | - | chr1.3:37969289-37969308 | MS.gene000110:CDS | 60.0% | |
| GCAAACAACCCTGGAGAGCC+GGG | + | chr1.3:37966885-37966904 | None:intergenic | 60.0% | |
| GCCGTTGGGTCCAAGTCTCT+TGG | - | chr1.3:37966460-37966479 | MS.gene000110:CDS | 60.0% | |
| !! | TGGGGAGTCCAGGGAGCATT+AGG | + | chr1.3:37966514-37966533 | None:intergenic | 60.0% |
| CGATGCATCGCCGTCATCCC+TGG | - | chr1.3:37969288-37969307 | MS.gene000110:CDS | 65.0% | |
| CGCATCACGTGGCAGAAGCG+TGG | - | chr1.3:37965558-37965577 | MS.gene000110:intron | 65.0% | |
| GTCTCTTACGTCGTGGGCCG+AGG | + | chr1.3:37966750-37966769 | None:intergenic | 65.0% | |
| TACGTCGTGGGCCGAGGTGT+TGG | + | chr1.3:37966744-37966763 | None:intergenic | 65.0% | |
| ! | GGTTTGGTCCCGGCTCTCCA+GGG | - | chr1.3:37966874-37966893 | MS.gene000110:intron | 65.0% |
| !! | TGGTTTGGTCCCGGCTCTCC+AGG | - | chr1.3:37966873-37966892 | MS.gene000110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 37965459 | 37969339 | 37965459 | ID=MS.gene000110 |
| chr1.3 | mRNA | 37965459 | 37969339 | 37965459 | ID=MS.gene000110.t1;Parent=MS.gene000110 |
| chr1.3 | exon | 37969121 | 37969339 | 37969121 | ID=MS.gene000110.t1.exon1;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37969121 | 37969339 | 37969121 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37968038 | 37968159 | 37968038 | ID=MS.gene000110.t1.exon2;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37968038 | 37968159 | 37968038 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37967876 | 37967959 | 37967876 | ID=MS.gene000110.t1.exon3;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37967876 | 37967959 | 37967876 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37967646 | 37967742 | 37967646 | ID=MS.gene000110.t1.exon4;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37967646 | 37967742 | 37967646 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37967091 | 37967307 | 37967091 | ID=MS.gene000110.t1.exon5;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37967091 | 37967307 | 37967091 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37966440 | 37966492 | 37966440 | ID=MS.gene000110.t1.exon6;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37966440 | 37966492 | 37966440 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| chr1.3 | exon | 37965459 | 37965554 | 37965459 | ID=MS.gene000110.t1.exon7;Parent=MS.gene000110.t1 |
| chr1.3 | CDS | 37965459 | 37965554 | 37965459 | ID=cds.MS.gene000110.t1;Parent=MS.gene000110.t1 |
| Gene Sequence |
| Protein sequence |
