Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034498.t1 | XP_013467673.1 | 97.6 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 5.70E-157 | 563.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034498.t1 | Q8S9M1 | 67.5 | 277 | 85 | 3 | 23 | 295 | 24 | 299 | 1.0e-98 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034498.t1 | I3SSW0 | 97.6 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 4.1e-157 | 563.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034498 | MS.gene37079 | PPI |
| MS.gene000110 | MS.gene034498 | PPI |
| MS.gene37276 | MS.gene034498 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034498.t1 | MTR_1g054070 | 97.627 | 295 | 7 | 0 | 1 | 295 | 3 | 297 | 0.0 | 591 |
| MS.gene034498.t1 | MTR_1g054070 | 95.254 | 295 | 7 | 1 | 1 | 295 | 3 | 290 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034498.t1 | AT2G42130 | 67.986 | 278 | 82 | 4 | 23 | 295 | 24 | 299 | 6.97e-133 | 379 |
| MS.gene034498.t1 | AT3G58010 | 69.262 | 244 | 72 | 2 | 39 | 280 | 48 | 290 | 1.27e-126 | 363 |
| MS.gene034498.t1 | AT3G58010 | 69.262 | 244 | 72 | 2 | 39 | 280 | 48 | 290 | 1.27e-126 | 363 |
| MS.gene034498.t1 | AT2G42130 | 66.667 | 273 | 66 | 4 | 46 | 295 | 1 | 271 | 2.25e-125 | 358 |
| MS.gene034498.t1 | AT2G42130 | 70.445 | 247 | 67 | 3 | 23 | 264 | 24 | 269 | 2.18e-122 | 351 |
| MS.gene034498.t1 | AT2G42130 | 67.227 | 238 | 72 | 3 | 23 | 255 | 24 | 260 | 5.02e-110 | 320 |
| MS.gene034498.t1 | AT2G42130 | 71.569 | 204 | 57 | 1 | 92 | 295 | 2 | 204 | 1.00e-105 | 306 |
Find 71 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTGGTCCCGGATCTCC+TGG | 0.255631 | 1.1:-40664871 | MS.gene034498:CDS |
| CAATTCCTTCATCTTCTTCA+TGG | 0.258486 | 1.1:-40666315 | MS.gene034498:CDS |
| TCGAGTCTCGTTAAAACTTC+TGG | 0.337043 | 1.1:+40662473 | None:intergenic |
| CGATGGAACTTTGAGTGGTT+TGG | 0.345387 | 1.1:-40664886 | MS.gene034498:CDS |
| CGATGCATCGCCGTCATCCC+TGG | 0.349723 | 1.1:-40662453 | MS.gene034498:CDS |
| TGGTTCTGATGCAGATAATA+AGG | 0.361190 | 1.1:-40662511 | MS.gene034498:intron |
| AACACCTAGCTTTCATAATC+TGG | 0.372388 | 1.1:+40662419 | None:intergenic |
| TACGTTGTGGGCCGAGGTGT+TGG | 0.377460 | 1.1:+40665003 | None:intergenic |
| GACAAATTAGCTAAACTTGA+AGG | 0.384219 | 1.1:+40664681 | None:intergenic |
| CGCAAACAACCCAGGAGATC+CGG | 0.385131 | 1.1:+40664861 | None:intergenic |
| AGAGTACCAGATCAGCTTAA+AGG | 0.398637 | 1.1:-40664140 | MS.gene034498:CDS |
| GTCTCTTACGTTGTGGGCCG+AGG | 0.406335 | 1.1:+40664997 | None:intergenic |
| TGCTGCTTATGCTAAGGAAA+TGG | 0.412492 | 1.1:-40666215 | MS.gene034498:CDS |
| TGGCCCCTCCACAGTTAACT+TGG | 0.446873 | 1.1:+40664223 | None:intergenic |
| AACTTTGAGTGGTTTGGTCC+CGG | 0.448840 | 1.1:-40664880 | MS.gene034498:CDS |
| TACAGGTCACCCTTTCTAGA+AGG | 0.454407 | 1.1:-40664910 | MS.gene034498:intron |
| CTCCTGGGTTGTTTGCGGCT+AGG | 0.461597 | 1.1:-40664855 | MS.gene034498:CDS |
| GATGTGAATGAAAGGATAAC+GGG | 0.462476 | 1.1:-40665042 | MS.gene034498:CDS |
| ATGAAGGAGGAGTATGTGGA+AGG | 0.466751 | 1.1:-40664194 | MS.gene034498:CDS |
| AGTGCACCTTTAAGCTGATC+TGG | 0.469556 | 1.1:+40664134 | None:intergenic |
| TATTGTGTCACCAACAGTCT+TGG | 0.471270 | 1.1:-40664168 | MS.gene034498:CDS |
| CGGATCTCCTGGGTTGTTTG+CGG | 0.479716 | 1.1:-40664860 | MS.gene034498:CDS |
| GCTTAAAGGTGCACTTGGGC+AGG | 0.488898 | 1.1:-40664126 | MS.gene034498:CDS |
| ATGGATGTCTTTATCAAGGA+TGG | 0.497103 | 1.1:-40664654 | MS.gene034498:CDS |
| TTACGTGATGCTCTCGCCGA+TGG | 0.498253 | 1.1:-40664071 | MS.gene034498:CDS |
| GCAAACAACCCAGGAGATCC+GGG | 0.502036 | 1.1:+40664862 | None:intergenic |
| TGATGTGAATGAAAGGATAA+CGG | 0.504697 | 1.1:-40665043 | MS.gene034498:CDS |
| TTCCATCGACCTTCTAGAAA+GGG | 0.507609 | 1.1:+40664901 | None:intergenic |
| GATCAGCTTAAAGGTGCACT+TGG | 0.509335 | 1.1:-40664131 | MS.gene034498:CDS |
| GAAGCGATTCTTTAGCAGAA+AGG | 0.509807 | 1.1:+40666188 | None:intergenic |
| GTTCCATCGACCTTCTAGAA+AGG | 0.510788 | 1.1:+40664900 | None:intergenic |
| GCTATGGTTCAAGTTCAAAC+TGG | 0.521173 | 1.1:-40666244 | MS.gene034498:CDS |
| GCGTGGAATTTGCAGAGCTA+TGG | 0.521443 | 1.1:-40666260 | MS.gene034498:CDS |
| CAGATAATAAGGAACACAGC+TGG | 0.524577 | 1.1:-40662500 | MS.gene034498:CDS |
| TGAAGGAGGAGTATGTGGAA+GGG | 0.525928 | 1.1:-40664193 | MS.gene034498:CDS |
| AATCTGGACTTGATTCTCCC+AGG | 0.529092 | 1.1:+40662435 | None:intergenic |
| TAGAATGAAGGAGGAGTATG+TGG | 0.529401 | 1.1:-40664198 | MS.gene034498:CDS |
| AAGTCCAGATTATGAAAGCT+AGG | 0.531868 | 1.1:-40662423 | None:intergenic |
| TCAACCAAGTTAACTGTGGA+GGG | 0.536332 | 1.1:-40664227 | MS.gene034498:CDS |
| ATTTCCTTAGCATAAGCAGC+AGG | 0.537111 | 1.1:+40666217 | None:intergenic |
| AAAGAATTGATGTGAATGAA+AGG | 0.540601 | 1.1:-40665050 | MS.gene034498:CDS |
| CTTGATTCTCCCAGGGATGA+CGG | 0.547658 | 1.1:+40662443 | None:intergenic |
| TACTCCTCCTTCATTCTAAG+TGG | 0.548015 | 1.1:+40664203 | None:intergenic |
| GATGCATCGCCGTCATCCCT+GGG | 0.548574 | 1.1:-40662452 | MS.gene034498:CDS |
| TACGTGATGCTCTCGCCGAT+GGG | 0.553971 | 1.1:-40664070 | MS.gene034498:CDS |
| ATCTGGACTTGATTCTCCCA+GGG | 0.556575 | 1.1:+40662436 | None:intergenic |
| CACCCTTTCTAGAAGGTCGA+TGG | 0.556922 | 1.1:-40664903 | MS.gene034498:CDS |
| GGTTTGGTCCCGGATCTCCT+GGG | 0.558547 | 1.1:-40664870 | MS.gene034498:CDS |
| AGAGCATCACGTAAAGGTAC+GGG | 0.563086 | 1.1:+40664080 | None:intergenic |
| ACTTTCCATGAAGAAGATGA+AGG | 0.563489 | 1.1:+40666310 | None:intergenic |
| CTCAACCAAGTTAACTGTGG+AGG | 0.564278 | 1.1:-40664228 | MS.gene034498:CDS |
| GAGAGCATCACGTAAAGGTA+CGG | 0.569225 | 1.1:+40664079 | None:intergenic |
| AAGGTCGATGGAACTTTGAG+TGG | 0.570543 | 1.1:-40664891 | MS.gene034498:CDS |
| GGAGGGGCCACTTAGAATGA+AGG | 0.571028 | 1.1:-40664210 | MS.gene034498:CDS |
| AGATAATAAGGAACACAGCT+GGG | 0.572812 | 1.1:-40662499 | MS.gene034498:CDS |
| CGCATCACGTGGCAGAAGCG+TGG | 0.577423 | 1.1:-40666277 | MS.gene034498:CDS |
| TCGGCGAGAGCATCACGTAA+AGG | 0.589648 | 1.1:+40664074 | None:intergenic |
| GACTAAGCTCTCAAAACCAC+CGG | 0.590188 | 1.1:+40665095 | None:intergenic |
| ACTCTGTCTTCCAAGACTGT+TGG | 0.591239 | 1.1:+40664158 | None:intergenic |
| ATCCTAGCCGCAAACAACCC+AGG | 0.599125 | 1.1:+40664853 | None:intergenic |
| TGCACCTGCTGCTTATGCTA+AGG | 0.621082 | 1.1:-40666221 | MS.gene034498:CDS |
| TTTGTGATTGTTGAAATACA+AGG | 0.627714 | 1.1:+40666343 | None:intergenic |
| ATCAGCTTAAAGGTGCACTT+GGG | 0.627941 | 1.1:-40664130 | MS.gene034498:CDS |
| CAACCAAGTTAACTGTGGAG+GGG | 0.634924 | 1.1:-40664226 | MS.gene034498:CDS |
| TCTCTCAACCAAGTTAACTG+TGG | 0.636429 | 1.1:-40664231 | MS.gene034498:CDS |
| AAAGGATAACGGGTCTTGAG+CGG | 0.639206 | 1.1:-40665032 | MS.gene034498:CDS |
| TTTCAACTTCACGCATCACG+TGG | 0.646833 | 1.1:-40666288 | MS.gene034498:CDS |
| TTTCAGTTTAAGGATGCCGG+TGG | 0.648956 | 1.1:-40665111 | MS.gene034498:intron |
| CATGATCTCTTATCTCGATG+AGG | 0.649034 | 1.1:-40663413 | MS.gene034498:CDS |
| AGCGGCTCAATCCAACACCT+CGG | 0.670774 | 1.1:-40665014 | MS.gene034498:CDS |
| GGGGCCACTTAGAATGAAGG+AGG | 0.670914 | 1.1:-40664207 | MS.gene034498:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAATCTGTTAAATAT+TGG | - | chr1.1:40664833-40664852 | MS.gene034498:intron | 10.0% |
| !! | ATTAACAAAAATTAAAACAA+TGG | + | chr1.1:40662698-40662717 | None:intergenic | 10.0% |
| !! | TTAACAAAAATTAAAACAAT+GGG | + | chr1.1:40662697-40662716 | None:intergenic | 10.0% |
| !! | TTATAATTGAAAAAACTTAT+AGG | + | chr1.1:40664425-40664444 | None:intergenic | 10.0% |
| !!! | AATTTTAAACAAAATATGAA+AGG | + | chr1.1:40664512-40664531 | None:intergenic | 10.0% |
| !!! | ATTTTTCTTTTCATTTTAAT+AGG | - | chr1.1:40666202-40666221 | MS.gene034498:CDS | 10.0% |
| !!! | TTTGTTAATTTATTTAGTTT+TGG | - | chr1.1:40662709-40662728 | MS.gene034498:intron | 10.0% |
| !! | TAACAAAAATTAAAACAATG+GGG | + | chr1.1:40662696-40662715 | None:intergenic | 15.0% |
| !!! | AAACACATTATTTTTAAACT+CGG | - | chr1.1:40664187-40664206 | MS.gene034498:CDS | 15.0% |
| !!! | ATAATTGATTTTGATATGTT+TGG | - | chr1.1:40662809-40662828 | MS.gene034498:intron | 15.0% |
| !!! | GTTTTATATATTTCATGAAA+TGG | - | chr1.1:40664987-40665006 | MS.gene034498:intron | 15.0% |
| !! | AAATATGTCATAACAAGAAA+GGG | + | chr1.1:40664342-40664361 | None:intergenic | 20.0% |
| !! | AATTTACTTAAGTGTATGTT+TGG | - | chr1.1:40662747-40662766 | MS.gene034498:intron | 20.0% |
| !! | ATTATAACCCTTGTATAAAT+TGG | + | chr1.1:40663189-40663208 | None:intergenic | 20.0% |
| !! | ATTGAAACCAATTTATACAA+GGG | - | chr1.1:40663179-40663198 | MS.gene034498:intron | 20.0% |
| !! | GAAAAAAATTGAAAAGCAAT+AGG | - | chr1.1:40666164-40666183 | MS.gene034498:intron | 20.0% |
| !! | GTTTAAAAATAATGTGTTTG+CGG | + | chr1.1:40664186-40664205 | None:intergenic | 20.0% |
| !! | TATATACATTCATGTAAAAG+CGG | + | chr1.1:40663044-40663063 | None:intergenic | 20.0% |
| !! | TGAATAAATTATTGCATGTT+TGG | + | chr1.1:40663157-40663176 | None:intergenic | 20.0% |
| !! | TGATTAAATTATTGCATGTT+TGG | + | chr1.1:40663275-40663294 | None:intergenic | 20.0% |
| !!! | CGGCAAATATATAATTTTAT+TGG | + | chr1.1:40666075-40666094 | None:intergenic | 20.0% |
| !!! | CTCTTTTACATAATGATTTT+CGG | - | chr1.1:40664280-40664299 | MS.gene034498:intron | 20.0% |
| !!! | TAAGAAATAATGTACACTTT+TGG | - | chr1.1:40665198-40665217 | MS.gene034498:intron | 20.0% |
| !!! | TGAAATAATTTTACTTTCTG+TGG | + | chr1.1:40664319-40664338 | None:intergenic | 20.0% |
| !!! | TTCAAATTGATTTTAGTAAG+TGG | + | chr1.1:40665973-40665992 | None:intergenic | 20.0% |
| !!! | TTTAGCTAATTTGTCAAAAA+TGG | - | chr1.1:40664127-40664146 | MS.gene034498:CDS | 20.0% |
| !!! | TTTTCAACAACTTCAAAATA+TGG | - | chr1.1:40665791-40665810 | MS.gene034498:intron | 20.0% |
| ! | AAAAATGGATGTCTTTATCA+AGG | - | chr1.1:40664142-40664161 | MS.gene034498:CDS | 25.0% |
| ! | AAAGAATTGATGTGAATGAA+AGG | - | chr1.1:40663750-40663769 | MS.gene034498:intron | 25.0% |
| ! | AACAACTTCAAAATATGGAA+GGG | - | chr1.1:40665796-40665815 | MS.gene034498:intron | 25.0% |
| ! | AATAACAGTTACAAGTAATG+AGG | - | chr1.1:40663345-40663364 | MS.gene034498:intron | 25.0% |
| ! | ATAAATTTAGGAGGAAATCT+AGG | + | chr1.1:40666007-40666026 | None:intergenic | 25.0% |
| ! | ATATACATTCATGTAAAAGC+GGG | + | chr1.1:40663043-40663062 | None:intergenic | 25.0% |
| ! | ATTGAAAAAACTTATAGGCA+TGG | + | chr1.1:40664420-40664439 | None:intergenic | 25.0% |
| ! | ATTGTGATATGATAGCTAAA+AGG | - | chr1.1:40663369-40663388 | MS.gene034498:intron | 25.0% |
| ! | CAAATATGTCATAACAAGAA+AGG | + | chr1.1:40664343-40664362 | None:intergenic | 25.0% |
| ! | CATTGAAACCAATTTATACA+AGG | - | chr1.1:40663178-40663197 | MS.gene034498:intron | 25.0% |
| ! | CGAAAATCATTATGTAAAAG+AGG | + | chr1.1:40664282-40664301 | None:intergenic | 25.0% |
| ! | GAGATAATCATAGGTAAAAA+TGG | + | chr1.1:40666240-40666259 | None:intergenic | 25.0% |
| ! | TAATATCTGAATGATTATGC+TGG | - | chr1.1:40666269-40666288 | MS.gene034498:CDS | 25.0% |
| ! | TGAGATCAAGCTAAATTTAA+GGG | + | chr1.1:40664050-40664069 | None:intergenic | 25.0% |
| ! | TTATTCAGAAAGCTTAGAAA+TGG | + | chr1.1:40663838-40663857 | None:intergenic | 25.0% |
| ! | TTTCATCCAGCTATAAATTT+AGG | + | chr1.1:40666019-40666038 | None:intergenic | 25.0% |
| ! | TTTGTGATTGTTGAAATACA+AGG | + | chr1.1:40662460-40662479 | None:intergenic | 25.0% |
| !! | CTTGTATAAATTGGTTTCAA+TGG | + | chr1.1:40663180-40663199 | None:intergenic | 25.0% |
| !!! | AACTTCGTTTTATTCTTGTT+GGG | + | chr1.1:40663589-40663608 | None:intergenic | 25.0% |
| AACAATCCGAAGAAAAACTT+CGG | + | chr1.1:40664016-40664035 | None:intergenic | 30.0% | |
| AATTCTCATACACATATACG+TGG | - | chr1.1:40665058-40665077 | MS.gene034498:CDS | 30.0% | |
| ACATTCTACTCACTTTCAAT+CGG | - | chr1.1:40663079-40663098 | MS.gene034498:intron | 30.0% | |
| AGCATGTATAAGAGAATTGA+GGG | + | chr1.1:40666115-40666134 | None:intergenic | 30.0% | |
| AGCTTTCTGAATAAGATGTA+AGG | - | chr1.1:40663844-40663863 | MS.gene034498:intron | 30.0% | |
| AGTATATTTGAGTACAAGCT+TGG | + | chr1.1:40663653-40663672 | None:intergenic | 30.0% | |
| ATATGCATTGTAATCTACGA+AGG | + | chr1.1:40665471-40665490 | None:intergenic | 30.0% | |
| ATATTTAGCAATTTCAAGCC+AGG | + | chr1.1:40665119-40665138 | None:intergenic | 30.0% | |
| ATGTGAGAATGATAGAATTG+AGG | + | chr1.1:40665906-40665925 | None:intergenic | 30.0% | |
| ATTCTCATACACATATACGT+GGG | - | chr1.1:40665059-40665078 | MS.gene034498:CDS | 30.0% | |
| CAACAACTTCAAAATATGGA+AGG | - | chr1.1:40665795-40665814 | MS.gene034498:intron | 30.0% | |
| CATAACTACCTGTTAAAACA+AGG | + | chr1.1:40664378-40664397 | None:intergenic | 30.0% | |
| CCAAAAAAGAAAGTAACTTG+TGG | - | chr1.1:40665088-40665107 | MS.gene034498:CDS | 30.0% | |
| CCTATGATTATCTCAAATCA+TGG | - | chr1.1:40666246-40666265 | MS.gene034498:CDS | 30.0% | |
| CGAGTTAGAATCAGTTATAA+AGG | + | chr1.1:40662930-40662949 | None:intergenic | 30.0% | |
| CTGCAAATATATAAAGCACA+AGG | + | chr1.1:40664092-40664111 | None:intergenic | 30.0% | |
| CTTGTGCTTTATATATTTGC+AGG | - | chr1.1:40664090-40664109 | MS.gene034498:CDS | 30.0% | |
| GAACTAACTACACAAATTGT+TGG | - | chr1.1:40663391-40663410 | MS.gene034498:intron | 30.0% | |
| GACAAATTAGCTAAACTTGA+AGG | + | chr1.1:40664122-40664141 | None:intergenic | 30.0% | |
| GCTTTCTGAATAAGATGTAA+GGG | - | chr1.1:40663845-40663864 | MS.gene034498:intron | 30.0% | |
| GTACTCAAATATACTTACTC+TGG | - | chr1.1:40663658-40663677 | MS.gene034498:intron | 30.0% | |
| GTGAGATCAAGCTAAATTTA+AGG | + | chr1.1:40664051-40664070 | None:intergenic | 30.0% | |
| TAACTGTTGCATTATCAGAT+TGG | - | chr1.1:40665567-40665586 | MS.gene034498:intron | 30.0% | |
| TAGCATGTATAAGAGAATTG+AGG | + | chr1.1:40666116-40666135 | None:intergenic | 30.0% | |
| TCAATTCTCTTATACATGCT+AGG | - | chr1.1:40666115-40666134 | MS.gene034498:intron | 30.0% | |
| TGATGTGAATGAAAGGATAA+CGG | - | chr1.1:40663757-40663776 | MS.gene034498:intron | 30.0% | |
| TGTAAATGTCTACCAACATA+AGG | + | chr1.1:40665161-40665180 | None:intergenic | 30.0% | |
| TTCATACTCTTTATTGCTAC+AGG | - | chr1.1:40663873-40663892 | MS.gene034498:intron | 30.0% | |
| TTTCCTCCTAAATTTATAGC+TGG | - | chr1.1:40666010-40666029 | MS.gene034498:intron | 30.0% | |
| ! | CCATGATTTGAGATAATCAT+AGG | + | chr1.1:40666249-40666268 | None:intergenic | 30.0% |
| ! | TGATGTCATTTCATGTTTGA+AGG | - | chr1.1:40665343-40665362 | MS.gene034498:intron | 30.0% |
| ! | TTAAGTCAGAACATTTTCAG+AGG | + | chr1.1:40664799-40664818 | None:intergenic | 30.0% |
| !! | ACTTCGTTTTATTCTTGTTG+GGG | + | chr1.1:40663588-40663607 | None:intergenic | 30.0% |
| !! | ATTTTGATGAACTATGAGTG+TGG | - | chr1.1:40662861-40662880 | MS.gene034498:intron | 30.0% |
| !! | CAACTTCGTTTTATTCTTGT+TGG | + | chr1.1:40663590-40663609 | None:intergenic | 30.0% |
| !! | GTAAGATTTTCTGGAAATCA+AGG | + | chr1.1:40665665-40665684 | None:intergenic | 30.0% |
| !! | TGAAATGGATTTTCTCTAGT+TGG | - | chr1.1:40665002-40665021 | MS.gene034498:intron | 30.0% |
| !! | TTTTTAGTCTCTTACGTTGT+GGG | + | chr1.1:40663812-40663831 | None:intergenic | 30.0% |
| !!! | CCACAAGTTACTTTCTTTTT+TGG | + | chr1.1:40665091-40665110 | None:intergenic | 30.0% |
| !!! | CTTGTTTTAACAGGTAGTTA+TGG | - | chr1.1:40664376-40664395 | MS.gene034498:intron | 30.0% |
| !!! | GCTTCGTTTTTTTGGATTAT+TGG | - | chr1.1:40662666-40662685 | MS.gene034498:intron | 30.0% |
| AACAACAATCGAGTAAAGAC+CGG | + | chr1.1:40663547-40663566 | None:intergenic | 35.0% | |
| AACTACCTGTTAAAACAAGG+TGG | + | chr1.1:40664375-40664394 | None:intergenic | 35.0% | |
| AAGAGAATTGAGGGAAACAA+CGG | + | chr1.1:40666106-40666125 | None:intergenic | 35.0% | |
| ACTATGCGCTGCTAATATTA+GGG | - | chr1.1:40664860-40664879 | MS.gene034498:CDS | 35.0% | |
| ACTTTCCATGAAGAAGATGA+AGG | + | chr1.1:40662493-40662512 | None:intergenic | 35.0% | |
| AGATAATAAGGAACACAGCT+GGG | - | chr1.1:40666301-40666320 | MS.gene034498:CDS | 35.0% | |
| AGGTACAACAAACTCTTTCT+AGG | + | chr1.1:40664492-40664511 | None:intergenic | 35.0% | |
| ATGCTAGGTTTGAATGACAT+GGG | - | chr1.1:40666130-40666149 | MS.gene034498:intron | 35.0% | |
| ATGGATGTCTTTATCAAGGA+TGG | - | chr1.1:40664146-40664165 | MS.gene034498:CDS | 35.0% | |
| ATGTTCTGACTTAACTGTTC+TGG | - | chr1.1:40664805-40664824 | MS.gene034498:intron | 35.0% | |
| CAATTCCTTCATCTTCTTCA+TGG | - | chr1.1:40662485-40662504 | MS.gene034498:CDS | 35.0% | |
| CAATTGTAGAAGCAAAACGA+CGG | + | chr1.1:40662994-40663013 | None:intergenic | 35.0% | |
| CACGAAACAACAGAATAAAC+AGG | + | chr1.1:40664886-40664905 | None:intergenic | 35.0% | |
| CAGTAAGAAATGCCTTATGT+TGG | - | chr1.1:40665146-40665165 | MS.gene034498:intron | 35.0% | |
| CATCCAGCTATAAATTTAGG+AGG | + | chr1.1:40666016-40666035 | None:intergenic | 35.0% | |
| CCAAAAAAACGAAGCAGAAA+AGG | + | chr1.1:40662661-40662680 | None:intergenic | 35.0% | |
| GAGGTGAATATAGAAATCAG+TGG | + | chr1.1:40664780-40664799 | None:intergenic | 35.0% | |
| GATGTGAATGAAAGGATAAC+GGG | - | chr1.1:40663758-40663777 | MS.gene034498:intron | 35.0% | |
| TATAGCTGGATGAAAGTTCT+AGG | - | chr1.1:40666024-40666043 | MS.gene034498:intron | 35.0% | |
| TCTTACACTGTCATGTGTAA+AGG | - | chr1.1:40665679-40665698 | MS.gene034498:intron | 35.0% | |
| TGCATTATCAGATTGGAATG+TGG | - | chr1.1:40665574-40665593 | MS.gene034498:intron | 35.0% | |
| ! | ATTGACTTAGAACGAGCTAA+AGG | - | chr1.1:40663439-40663458 | MS.gene034498:intron | 35.0% |
| ! | CATGACAGTGTAAGATTTTC+TGG | + | chr1.1:40665674-40665693 | None:intergenic | 35.0% |
| ! | GGAGACATCTTTTCAGTTTA+AGG | - | chr1.1:40663679-40663698 | MS.gene034498:intron | 35.0% |
| ! | TCTTTTCAGTTTAAGGATGC+CGG | - | chr1.1:40663686-40663705 | MS.gene034498:intron | 35.0% |
| ! | TGAGGCAAAATTGATTTCAG+AGG | - | chr1.1:40662783-40662802 | MS.gene034498:intron | 35.0% |
| ! | TGTCATTTCATGTTTGAAGG+TGG | - | chr1.1:40665346-40665365 | MS.gene034498:intron | 35.0% |
| !! | AAGGAAGCATTGTAACTCAA+AGG | + | chr1.1:40664073-40664092 | None:intergenic | 35.0% |
| !! | ACCTTAAAGCATCGAGTTTA+TGG | + | chr1.1:40663486-40663505 | None:intergenic | 35.0% |
| !! | CCTTAAAGCATCGAGTTTAT+GGG | + | chr1.1:40663485-40663504 | None:intergenic | 35.0% |
| !! | TGGTTCTGATGCAGATAATA+AGG | - | chr1.1:40666289-40666308 | MS.gene034498:CDS | 35.0% |
| !! | TTTGGTTCTACTCTAAGATG+AGG | - | chr1.1:40662765-40662784 | MS.gene034498:intron | 35.0% |
| !!! | AACTCGATGCTTTAAGGTTT+TGG | - | chr1.1:40663488-40663507 | MS.gene034498:intron | 35.0% |
| !!! | ACTCGATGCTTTAAGGTTTT+GGG | - | chr1.1:40663489-40663508 | MS.gene034498:intron | 35.0% |
| !!! | CCTTTTCTGCTTCGTTTTTT+TGG | - | chr1.1:40662658-40662677 | MS.gene034498:intron | 35.0% |
| !!! | GTTTTTAGTCTCTTACGTTG+TGG | + | chr1.1:40663813-40663832 | None:intergenic | 35.0% |
| AAAATCGCCCAGGGTTTAAT+AGG | - | chr1.1:40665866-40665885 | MS.gene034498:intron | 40.0% | |
| AAATATGTGCGCACAAAGAC+AGG | - | chr1.1:40665248-40665267 | MS.gene034498:intron | 40.0% | |
| AATGACATGGGAACATGGAA+AGG | - | chr1.1:40666142-40666161 | MS.gene034498:intron | 40.0% | |
| ACTTAGAACGAGCTAAAGGA+AGG | - | chr1.1:40663443-40663462 | MS.gene034498:intron | 40.0% | |
| AGGGTTTAATAGGTCTCGAA+GGG | - | chr1.1:40665876-40665895 | MS.gene034498:intron | 40.0% | |
| ATCAGTGGTAGCTTACTTAG+TGG | + | chr1.1:40664765-40664784 | None:intergenic | 40.0% | |
| ATGAGTGTGGTTAAGCATCA+AGG | - | chr1.1:40662874-40662893 | MS.gene034498:intron | 40.0% | |
| ATTTCCTTAGCATAAGCAGC+AGG | + | chr1.1:40662586-40662605 | None:intergenic | 40.0% | |
| CACTATGCGCTGCTAATATT+AGG | - | chr1.1:40664859-40664878 | MS.gene034498:CDS | 40.0% | |
| CAGAAAGTGAAACTACTCAG+AGG | + | chr1.1:40665764-40665783 | None:intergenic | 40.0% | |
| CAGATAATAAGGAACACAGC+TGG | - | chr1.1:40666300-40666319 | MS.gene034498:CDS | 40.0% | |
| CATGATCTCTTATCTCGATG+AGG | - | chr1.1:40665387-40665406 | MS.gene034498:intron | 40.0% | |
| CATGCTAGGTTTGAATGACA+TGG | - | chr1.1:40666129-40666148 | MS.gene034498:intron | 40.0% | |
| CCCATAAACTCGATGCTTTA+AGG | - | chr1.1:40663482-40663501 | MS.gene034498:intron | 40.0% | |
| CTCTGAGTAGTTTCACTTTC+TGG | - | chr1.1:40665762-40665781 | MS.gene034498:intron | 40.0% | |
| GAAGCAGAAAAGGAAATGAG+TGG | + | chr1.1:40662651-40662670 | None:intergenic | 40.0% | |
| GAAGCGATTCTTTAGCAGAA+AGG | + | chr1.1:40662615-40662634 | None:intergenic | 40.0% | |
| GTTTGAATGACATGGGAACA+TGG | - | chr1.1:40666137-40666156 | MS.gene034498:intron | 40.0% | |
| TACTCCTCCTTCATTCTAAG+TGG | + | chr1.1:40664600-40664619 | None:intergenic | 40.0% | |
| TATTGTGTCACCAACAGTCT+TGG | - | chr1.1:40664632-40664651 | MS.gene034498:CDS | 40.0% | |
| TCAACCAAGTTAACTGTGGA+GGG | - | chr1.1:40664573-40664592 | MS.gene034498:intron | 40.0% | |
| TCGAGTCTCGTTAAAACTTC+TGG | + | chr1.1:40666330-40666349 | None:intergenic | 40.0% | |
| TCTCTCAACCAAGTTAACTG+TGG | - | chr1.1:40664569-40664588 | MS.gene034498:intron | 40.0% | |
| TGAGAATGAAAAATCGCCCA+GGG | - | chr1.1:40665857-40665876 | MS.gene034498:intron | 40.0% | |
| TGCACTAAGAAACGCATGTA+TGG | - | chr1.1:40665523-40665542 | MS.gene034498:intron | 40.0% | |
| TTCGAGACCTATTAAACCCT+GGG | + | chr1.1:40665876-40665895 | None:intergenic | 40.0% | |
| TTTAATAGGTCTCGAAGGGA+AGG | - | chr1.1:40665880-40665899 | MS.gene034498:intron | 40.0% | |
| ! | AGAGTACCAGATCAGCTTAA+AGG | - | chr1.1:40664660-40664679 | MS.gene034498:CDS | 40.0% |
| ! | ATCAGCTTAAAGGTGCACTT+GGG | - | chr1.1:40664670-40664689 | MS.gene034498:CDS | 40.0% |
| ! | GCTATGGTTCAAGTTCAAAC+TGG | - | chr1.1:40662556-40662575 | MS.gene034498:intron | 40.0% |
| ! | GGGAAACAACGGATTTACAT+CGG | + | chr1.1:40666095-40666114 | None:intergenic | 40.0% |
| ! | GTCAGTCCGAAGTTTTTCTT+CGG | - | chr1.1:40664007-40664026 | MS.gene034498:intron | 40.0% |
| ! | GTGATGTACGTTACACCTTT+TGG | - | chr1.1:40665623-40665642 | MS.gene034498:intron | 40.0% |
| ! | TAGAATGAAGGAGGAGTATG+TGG | - | chr1.1:40664602-40664621 | MS.gene034498:intron | 40.0% |
| ! | TAGTGGAACTTTTAGCCCAT+CGG | + | chr1.1:40664748-40664767 | None:intergenic | 40.0% |
| ! | TATGGTTGCAACTGGTGTTT+TGG | - | chr1.1:40665541-40665560 | MS.gene034498:intron | 40.0% |
| ! | TGCTGCTTATGCTAAGGAAA+TGG | - | chr1.1:40662585-40662604 | MS.gene034498:intron | 40.0% |
| ! | TTACACCTTTTGGTCATGCT+GGG | - | chr1.1:40665633-40665652 | MS.gene034498:intron | 40.0% |
| ! | TTCCATCGACCTTCTAGAAA+GGG | + | chr1.1:40663902-40663921 | None:intergenic | 40.0% |
| ! | TTTTCCTCACTGTCACAGTT+TGG | - | chr1.1:40665823-40665842 | MS.gene034498:intron | 40.0% |
| !!! | AGTGTCCACCTTGTTTTAAC+AGG | - | chr1.1:40664367-40664386 | MS.gene034498:intron | 40.0% |
| !!! | GTTTTGAGAGCTTAGTCTCT+GGG | - | chr1.1:40663711-40663730 | MS.gene034498:intron | 40.0% |
| AACGCATGTATGGTTGCAAC+TGG | - | chr1.1:40665533-40665552 | MS.gene034498:intron | 45.0% | |
| AAGGTCGATGGAACTTTGAG+TGG | - | chr1.1:40663909-40663928 | MS.gene034498:intron | 45.0% | |
| AATCTGGACTTGATTCTCCC+AGG | + | chr1.1:40666368-40666387 | None:intergenic | 45.0% | |
| ACATTCATGTAAAAGCGGGC+TGG | + | chr1.1:40663039-40663058 | None:intergenic | 45.0% | |
| ACTCTGTCTTCCAAGACTGT+TGG | + | chr1.1:40664645-40664664 | None:intergenic | 45.0% | |
| AGTGCACCTTTAAGCTGATC+TGG | + | chr1.1:40664669-40664688 | None:intergenic | 45.0% | |
| ATCTGGACTTGATTCTCCCA+GGG | + | chr1.1:40666367-40666386 | None:intergenic | 45.0% | |
| CAACCAAGTTAACTGTGGAG+GGG | - | chr1.1:40664574-40664593 | MS.gene034498:intron | 45.0% | |
| CAGGGTTTAATAGGTCTCGA+AGG | - | chr1.1:40665875-40665894 | MS.gene034498:intron | 45.0% | |
| CATAACCCAGCATGACCAAA+AGG | + | chr1.1:40665641-40665660 | None:intergenic | 45.0% | |
| CGATGGAACTTTGAGTGGTT+TGG | - | chr1.1:40663914-40663933 | MS.gene034498:intron | 45.0% | |
| CTCAACCAAGTTAACTGTGG+AGG | - | chr1.1:40664572-40664591 | MS.gene034498:intron | 45.0% | |
| CTGAGAATGAAAAATCGCCC+AGG | - | chr1.1:40665856-40665875 | MS.gene034498:intron | 45.0% | |
| CTTCGAGACCTATTAAACCC+TGG | + | chr1.1:40665877-40665896 | None:intergenic | 45.0% | |
| GACTAAGCTCTCAAAACCAC+CGG | + | chr1.1:40663708-40663727 | None:intergenic | 45.0% | |
| TACAGGTCACCCTTTCTAGA+AGG | - | chr1.1:40663890-40663909 | MS.gene034498:intron | 45.0% | |
| TATTCTTGTTGGGGAGTCCA+GGG | + | chr1.1:40663579-40663598 | None:intergenic | 45.0% | |
| TCATCCAAACTGTGACAGTG+AGG | + | chr1.1:40665830-40665849 | None:intergenic | 45.0% | |
| TTATTCTTGTTGGGGAGTCC+AGG | + | chr1.1:40663580-40663599 | None:intergenic | 45.0% | |
| TTTCAACTTCACGCATCACG+TGG | - | chr1.1:40662512-40662531 | MS.gene034498:intron | 45.0% | |
| TTTCAGTTTAAGGATGCCGG+TGG | - | chr1.1:40663689-40663708 | MS.gene034498:intron | 45.0% | |
| ! | AAGTAACTTGTGGCTTAGCC+TGG | - | chr1.1:40665098-40665117 | MS.gene034498:CDS | 45.0% |
| ! | AGAGCATCACGTAAAGGTAC+GGG | + | chr1.1:40664723-40664742 | None:intergenic | 45.0% |
| ! | ATGAAGGAGGAGTATGTGGA+AGG | - | chr1.1:40664606-40664625 | MS.gene034498:intron | 45.0% |
| ! | GATCAGCTTAAAGGTGCACT+TGG | - | chr1.1:40664669-40664688 | MS.gene034498:CDS | 45.0% |
| ! | GTTACACCTTTTGGTCATGC+TGG | - | chr1.1:40665632-40665651 | MS.gene034498:intron | 45.0% |
| ! | GTTCCATCGACCTTCTAGAA+AGG | + | chr1.1:40663903-40663922 | None:intergenic | 45.0% |
| ! | TGAAGGAGGAGTATGTGGAA+GGG | - | chr1.1:40664607-40664626 | MS.gene034498:intron | 45.0% |
| ! | TTGTTGTTCCTAATGCTCCC+TGG | - | chr1.1:40663559-40663578 | MS.gene034498:intron | 45.0% |
| !! | AAAGGATAACGGGTCTTGAG+CGG | - | chr1.1:40663768-40663787 | MS.gene034498:intron | 45.0% |
| !! | AACTTTGAGTGGTTTGGTCC+CGG | - | chr1.1:40663920-40663939 | MS.gene034498:intron | 45.0% |
| !! | AGCTGGATGAAAGTTCTAGG+TGG | - | chr1.1:40666027-40666046 | MS.gene034498:intron | 45.0% |
| !! | GAGAGCATCACGTAAAGGTA+CGG | + | chr1.1:40664724-40664743 | None:intergenic | 45.0% |
| !!! | CGATGCTTTAAGGTTTTGGG+AGG | - | chr1.1:40663492-40663511 | MS.gene034498:intron | 45.0% |
| !!! | GGTTTTGAGAGCTTAGTCTC+TGG | - | chr1.1:40663710-40663729 | MS.gene034498:intron | 45.0% |
| CTTGATTCTCCCAGGGATGA+CGG | + | chr1.1:40666360-40666379 | None:intergenic | 50.0% | |
| GCGTGGAATTTGCAGAGCTA+TGG | - | chr1.1:40662540-40662559 | MS.gene034498:intron | 50.0% | |
| ! | CACCCTTTCTAGAAGGTCGA+TGG | - | chr1.1:40663897-40663916 | MS.gene034498:intron | 50.0% |
| ! | TCCAAGTCTCTTGGTGGTTC+CGG | - | chr1.1:40663525-40663544 | MS.gene034498:intron | 50.0% |
| ! | TGCACCTGCTGCTTATGCTA+AGG | - | chr1.1:40662579-40662598 | MS.gene034498:intron | 50.0% |
| !! | TCATGTAAAAGCGGGCTGGA+TGG | + | chr1.1:40663035-40663054 | None:intergenic | 50.0% |
| !!! | AAGGTTTTGGGAGGAGCTGT+TGG | - | chr1.1:40663501-40663520 | MS.gene034498:intron | 50.0% |
| !!! | AGGTTTTGGGAGGAGCTGTT+GGG | - | chr1.1:40663502-40663521 | MS.gene034498:intron | 50.0% |
| ACCGGAACCACCAAGAGACT+TGG | + | chr1.1:40663529-40663548 | None:intergenic | 55.0% | |
| AGCGGCTCAATCCAACACCT+CGG | - | chr1.1:40663786-40663805 | MS.gene034498:intron | 55.0% | |
| ATCCTAGCCGCAAACAACCC+AGG | + | chr1.1:40663950-40663969 | None:intergenic | 55.0% | |
| CGCAAACAACCCAGGAGATC+CGG | + | chr1.1:40663942-40663961 | None:intergenic | 55.0% | |
| CGGATCTCCTGGGTTGTTTG+CGG | - | chr1.1:40663940-40663959 | MS.gene034498:intron | 55.0% | |
| GCAAACAACCCAGGAGATCC+GGG | + | chr1.1:40663941-40663960 | None:intergenic | 55.0% | |
| GCTGTTGGGTCCAAGTCTCT+TGG | - | chr1.1:40663516-40663535 | MS.gene034498:intron | 55.0% | |
| GGAGGGGCCACTTAGAATGA+AGG | - | chr1.1:40664590-40664609 | MS.gene034498:intron | 55.0% | |
| GGGGCCACTTAGAATGAAGG+AGG | - | chr1.1:40664593-40664612 | MS.gene034498:intron | 55.0% | |
| GTTGGGTCCAAGTCTCTTGG+TGG | - | chr1.1:40663519-40663538 | MS.gene034498:intron | 55.0% | |
| TACGTGATGCTCTCGCCGAT+GGG | - | chr1.1:40664730-40664749 | MS.gene034498:intron | 55.0% | |
| TGGCCCCTCCACAGTTAACT+TGG | + | chr1.1:40664580-40664599 | None:intergenic | 55.0% | |
| TTACGTGATGCTCTCGCCGA+TGG | - | chr1.1:40664729-40664748 | MS.gene034498:intron | 55.0% | |
| ! | GCTTAAAGGTGCACTTGGGC+AGG | - | chr1.1:40664674-40664693 | MS.gene034498:CDS | 55.0% |
| !! | TCGGCGAGAGCATCACGTAA+AGG | + | chr1.1:40664729-40664748 | None:intergenic | 55.0% |
| CTCCTGGGTTGTTTGCGGCT+AGG | - | chr1.1:40663945-40663964 | MS.gene034498:intron | 60.0% | |
| GATGCATCGCCGTCATCCCT+GGG | - | chr1.1:40666348-40666367 | MS.gene034498:CDS | 60.0% | |
| GTCTCTTACGTTGTGGGCCG+AGG | + | chr1.1:40663806-40663825 | None:intergenic | 60.0% | |
| TACGTTGTGGGCCGAGGTGT+TGG | + | chr1.1:40663800-40663819 | None:intergenic | 60.0% | |
| ! | GGTTTGGTCCCGGATCTCCT+GGG | - | chr1.1:40663930-40663949 | MS.gene034498:intron | 60.0% |
| !! | TGGGGAGTCCAGGGAGCATT+AGG | + | chr1.1:40663570-40663589 | None:intergenic | 60.0% |
| !! | TGGTTTGGTCCCGGATCTCC+TGG | - | chr1.1:40663929-40663948 | MS.gene034498:intron | 60.0% |
| CGATGCATCGCCGTCATCCC+TGG | - | chr1.1:40666347-40666366 | MS.gene034498:CDS | 65.0% | |
| CGCATCACGTGGCAGAAGCG+TGG | - | chr1.1:40662523-40662542 | MS.gene034498:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 40662424 | 40666398 | 40662424 | ID=MS.gene034498 |
| chr1.1 | mRNA | 40662424 | 40666398 | 40662424 | ID=MS.gene034498.t1;Parent=MS.gene034498 |
| chr1.1 | exon | 40666180 | 40666398 | 40666180 | ID=MS.gene034498.t1.exon1;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40666180 | 40666398 | 40666180 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40665006 | 40665127 | 40665006 | ID=MS.gene034498.t1.exon2;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40665006 | 40665127 | 40665006 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40664844 | 40664927 | 40664844 | ID=MS.gene034498.t1.exon3;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40664844 | 40664927 | 40664844 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40664614 | 40664710 | 40664614 | ID=MS.gene034498.t1.exon4;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40664614 | 40664710 | 40664614 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40664054 | 40664270 | 40664054 | ID=MS.gene034498.t1.exon5;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40664054 | 40664270 | 40664054 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40663405 | 40663457 | 40663405 | ID=MS.gene034498.t1.exon6;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40663405 | 40663457 | 40663405 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| chr1.1 | exon | 40662424 | 40662519 | 40662424 | ID=MS.gene034498.t1.exon7;Parent=MS.gene034498.t1 |
| chr1.1 | CDS | 40662424 | 40662519 | 40662424 | ID=cds.MS.gene034498.t1;Parent=MS.gene034498.t1 |
| Gene Sequence |
| Protein sequence |
