AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00066.t1 MTR_2g032130 98.270 289 5 0 1 289 1 289 0.0 588
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00066.t1 AT1G30630 74.394 289 74 0 1 289 4 292 6.00e-169 469
MS.gene00066.t1 AT2G34840 75.000 288 72 0 2 289 6 293 6.65e-169 469
MS.gene00066.t1 AT2G34840 75.234 214 53 0 76 289 1 214 4.35e-125 355

Find 55 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGATTTGCCAGTGTTTC+TGG 0.104502 2.1:-59933029 None:intergenic
TGCAAATGCTTGGCTTGATT+TGG 0.285359 2.1:+59931688 MS.gene00066:CDS
TGATGAAGCTGAGACTCTTT+TGG 0.330291 2.1:+59932683 MS.gene00066:CDS
AACCATCTTCTAAATCATTC+AGG 0.343553 2.1:+59933075 MS.gene00066:CDS
GTAGCATTGTTCCCAATTGC+AGG 0.373136 2.1:-59931172 None:intergenic
GCTACGTTGAGGCTTGTTGC+TGG 0.380071 2.1:+59931190 MS.gene00066:CDS
TGGCTTGCAGATCCTGCAAT+TGG 0.388117 2.1:+59931160 MS.gene00066:CDS
AGAAATTGTAACCTTTGAAT+CGG 0.388325 2.1:-59931045 None:intergenic
GATATCTCTCAGACAAATCT+TGG 0.389822 2.1:-59932602 None:intergenic
TACCTGAATGATTTAGAAGA+TGG 0.403328 2.1:-59933077 None:intergenic
AGGAGCAGAATCGTTGATTT+CGG 0.403329 2.1:-59930976 None:intergenic
GGAAGATCAAATGCGCCTCT+TGG 0.403390 2.1:-59932581 None:intergenic
GTTGTATGCTGTCTTCATCT+TGG 0.408937 2.1:+59933050 MS.gene00066:CDS
CTCTTGACCAGTACATGATC+TGG 0.409709 2.1:-59934521 None:intergenic
GGCTGTTTGCTGCATGCAAA+TGG 0.409788 2.1:+59932653 MS.gene00066:CDS
ATAGAGAGCGAGCAATTTAA+CGG 0.433280 2.1:-59931012 None:intergenic
TCTACTAGTTTGCTCTTGAA+TGG 0.434996 2.1:+59932627 MS.gene00066:CDS
CGCTGCTGTTGATTGCAGCT+TGG 0.447662 2.1:-59930860 None:intergenic
TTACTCAGCTTGCAAATGCT+TGG 0.460646 2.1:+59931678 MS.gene00066:CDS
TATGTCGTCGGGAGAGAGGT+TGG 0.471135 2.1:-59930889 None:intergenic
GGCTTGCAGATCCTGCAATT+GGG 0.471416 2.1:+59931161 MS.gene00066:CDS
TATCGTTGCTACATCGCTCT+TGG 0.471667 2.1:+59930933 MS.gene00066:CDS
GAAATTGTAACCTTTGAATC+GGG 0.482521 2.1:-59931044 None:intergenic
TGTGATTTGTGCAGGATGCT+AGG 0.494756 2.1:+59933003 MS.gene00066:intron
CTACGTTGAGGCTTGTTGCT+GGG 0.494907 2.1:+59931191 MS.gene00066:CDS
CGGAGGTTGAAGAGGTGATC+TGG 0.496215 2.1:-59930813 None:intergenic
CTGGGTGTGAAAGTTTCAGC+TGG 0.516866 2.1:-59934502 None:intergenic
GTCGCGTTCGATTATGTCGT+CGG 0.519121 2.1:-59930901 None:intergenic
TGCTTGGCTTGATTTGGCTG+TGG 0.525363 2.1:+59931694 MS.gene00066:CDS
AGTTGTTGCGGAGGTTGAAG+AGG 0.528845 2.1:-59930821 None:intergenic
TTTCTCATCACCCGATTCAA+AGG 0.531346 2.1:+59931034 MS.gene00066:CDS
TCGCGTTCGATTATGTCGTC+GGG 0.546258 2.1:-59930900 None:intergenic
CTCCGCAACAACTTCTACCT+CGG 0.548277 2.1:+59930831 MS.gene00066:CDS
CGATTATGTCGTCGGGAGAG+AGG 0.551111 2.1:-59930893 None:intergenic
CGATCGCGAGTATTAAAGAA+TGG 0.553150 2.1:+59931140 MS.gene00066:CDS
GTGATTTGTGCAGGATGCTA+GGG 0.562390 2.1:+59933004 MS.gene00066:intron
TAGTTTGCTCTTGAATGGCA+AGG 0.567959 2.1:+59932632 MS.gene00066:CDS
ATTATGCTGAGAGACAACTT+AGG 0.580630 2.1:+59931624 MS.gene00066:CDS
TCTTGACCAGTACATGATCT+GGG 0.583999 2.1:-59934520 None:intergenic
TGCTAGGGATCCAGAAACAC+TGG 0.586587 2.1:+59933019 MS.gene00066:CDS
CAGATCATGTACTGGTCAAG+AGG 0.589094 2.1:+59934522 MS.gene00066:CDS
AAATCTTTATTAAGATGCAT+AGG 0.590426 2.1:+59931597 MS.gene00066:CDS
TTCACACCCAGATCATGTAC+TGG 0.591368 2.1:+59934514 MS.gene00066:CDS
GCTGTTTGCTGCATGCAAAT+GGG 0.591850 2.1:+59932654 MS.gene00066:CDS
CGAGGTAGAAGTTGTTGCGG+AGG 0.594425 2.1:-59930830 None:intergenic
TACTAATGCTGGTGGAACCA+TGG 0.596370 2.1:+59931258 MS.gene00066:CDS
GCGTTGAAGTATACTAATGC+TGG 0.597020 2.1:+59931247 MS.gene00066:CDS
CACCGAGGTAGAAGTTGTTG+CGG 0.603080 2.1:-59930833 None:intergenic
TTTGGTGGAAGCACTCAACA+AGG 0.627745 2.1:+59932701 MS.gene00066:CDS
TTGAAGTATACTAATGCTGG+TGG 0.633802 2.1:+59931250 MS.gene00066:CDS
AGATCATGTACTGGTCAAGA+GGG 0.649201 2.1:+59934523 MS.gene00066:CDS
TTGGGAACAATGCTACGTTG+AGG 0.655531 2.1:+59931179 MS.gene00066:CDS
TTAACGGCTTGAAGAGACGT+AGG 0.656056 2.1:-59930996 None:intergenic
TTGCAGCTTGGTATGCACCG+AGG 0.725254 2.1:-59930848 None:intergenic
GGGAGGGGCGAAGATCCAAG+AGG 0.749423 2.1:+59932566 MS.gene00066:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATAATAATTTTAAAAAT+TGG + chr2.1:59931808-59931827 MS.gene00066:intron 10.0%
!!! TTTTTTAACTTTTAAATGTA+GGG + chr2.1:59931993-59932012 MS.gene00066:intron 10.0%
!!! TTTTTTTAACTTTTAAATGT+AGG + chr2.1:59931992-59932011 MS.gene00066:intron 10.0%
!! AAAAAATTCAATATAGACAT+AGG + chr2.1:59932024-59932043 MS.gene00066:intron 15.0%
!! AAAAATTCAATATAGACATA+GGG + chr2.1:59932025-59932044 MS.gene00066:intron 15.0%
!! TATTAAAATTCCATATAGTT+GGG - chr2.1:59933390-59933409 None:intergenic 15.0%
!! TTCATCAAGTAATAATAATA+AGG - chr2.1:59932444-59932463 None:intergenic 15.0%
!!! AATTAAAAACTTTGGAATAT+AGG + chr2.1:59933499-59933518 MS.gene00066:intron 15.0%
!!! ATTAAAAACTTTGGAATATA+GGG + chr2.1:59933500-59933519 MS.gene00066:intron 15.0%
!!! TATATATGATAATAGAGTTT+TGG - chr2.1:59933965-59933984 None:intergenic 15.0%
!!! TTATCAAACATTAAAAGTTT+TGG - chr2.1:59932829-59932848 None:intergenic 15.0%
!! AAATCACAAGATAAAAAAAG+AGG - chr2.1:59933133-59933152 None:intergenic 20.0%
!! AAATCTTTATTAAGATGCAT+AGG + chr2.1:59931597-59931616 MS.gene00066:CDS 20.0%
!! AACATCATTTGTAAGAATAA+CGG + chr2.1:59933838-59933857 MS.gene00066:intron 20.0%
!! AATATCAAACAACTGAAAAT+TGG - chr2.1:59932859-59932878 None:intergenic 20.0%
!! AATCACAAGATAAAAAAAGA+GGG - chr2.1:59933132-59933151 None:intergenic 20.0%
!! ATATCTGATTATGTATTTCT+TGG + chr2.1:59934259-59934278 MS.gene00066:intron 20.0%
!! ATTAAAATTCCATATAGTTG+GGG - chr2.1:59933389-59933408 None:intergenic 20.0%
!! ATTAAACCTAAAATGTTTCA+TGG + chr2.1:59933631-59933650 MS.gene00066:intron 20.0%
!! GATGTATTGAATTTCTTAAA+GGG - chr2.1:59932356-59932375 None:intergenic 20.0%
!! GCTTATGAATAATTCATAAA+AGG + chr2.1:59932182-59932201 MS.gene00066:intron 20.0%
!! GTATTAAAATTCCATATAGT+TGG - chr2.1:59933391-59933410 None:intergenic 20.0%
!! TGATGTATTGAATTTCTTAA+AGG - chr2.1:59932357-59932376 None:intergenic 20.0%
!! TGCTATGTAGATTATTATTA+GGG + chr2.1:59931907-59931926 MS.gene00066:intron 20.0%
!! TTAAAAATATCTCTGTGATT+TGG + chr2.1:59931395-59931414 MS.gene00066:intron 20.0%
!!! AGATTTGAAAATAGATGTTT+TGG + chr2.1:59932499-59932518 MS.gene00066:intron 20.0%
!!! AGTGTAAAACTGTTTTTTTA+CGG + chr2.1:59931445-59931464 MS.gene00066:intron 20.0%
!!! CAATGCAAAATTTCTATTTT+TGG + chr2.1:59932307-59932326 MS.gene00066:intron 20.0%
!!! CATCAACATTTTCAATAATA+AGG - chr2.1:59931748-59931767 None:intergenic 20.0%
!!! GCATATCATTAAAATCTTTT+GGG + chr2.1:59933540-59933559 MS.gene00066:intron 20.0%
!!! TATTGAAAATGTTGATGAAA+GGG + chr2.1:59931751-59931770 MS.gene00066:intron 20.0%
!!! TCTATAATTTTAATACCTGT+GGG + chr2.1:59933264-59933283 MS.gene00066:intron 20.0%
!!! TGCAAGTAAATAAGTTTTTA+TGG + chr2.1:59932092-59932111 MS.gene00066:intron 20.0%
!!! TGCATATCATTAAAATCTTT+TGG + chr2.1:59933539-59933558 MS.gene00066:intron 20.0%
!!! TTAAACTTTTAAGATGATCA+TGG - chr2.1:59932266-59932285 None:intergenic 20.0%
!!! TTATTGAAAATGTTGATGAA+AGG + chr2.1:59931750-59931769 MS.gene00066:intron 20.0%
! AAAAATTGGAAGTGATTGAA+TGG + chr2.1:59931822-59931841 MS.gene00066:intron 25.0%
! AAAATATAAGTATCACAGTC+TGG - chr2.1:59934104-59934123 None:intergenic 25.0%
! AAGTAACAAAAAGATTTCAC+CGG - chr2.1:59933215-59933234 None:intergenic 25.0%
! AATGAAGATTGAAATTCTGT+TGG + chr2.1:59932885-59932904 MS.gene00066:intron 25.0%
! AGAAATTGTAACCTTTGAAT+CGG - chr2.1:59931048-59931067 None:intergenic 25.0%
! ATCACAAGATAAAAAAAGAG+GGG - chr2.1:59933131-59933150 None:intergenic 25.0%
! ATTTACAAGTTACTCACTAA+TGG - chr2.1:59934466-59934485 None:intergenic 25.0%
! ATTTACAGCGTAAATTAAAG+AGG - chr2.1:59934132-59934151 None:intergenic 25.0%
! GCTCTTTCAATTAAAAACTT+TGG + chr2.1:59933491-59933510 MS.gene00066:intron 25.0%
! GTGCTATGTAGATTATTATT+AGG + chr2.1:59931906-59931925 MS.gene00066:intron 25.0%
!! GCTCTTTAGTTTAAATCTTT+AGG + chr2.1:59932907-59932926 MS.gene00066:intron 25.0%
!! TCATTTTACAGTTTCACTAT+TGG - chr2.1:59933937-59933956 None:intergenic 25.0%
!! TTTATCGTTATTGTTGTTGT+AGG + chr2.1:59931111-59931130 MS.gene00066:intron 25.0%
!!! AAAATCTTTTGGGTTTAGAA+TGG + chr2.1:59933550-59933569 MS.gene00066:intron 25.0%
!!! ATGTTGGTTTTGTGTTTTTT+AGG + chr2.1:59931558-59931577 MS.gene00066:intron 25.0%
!!! ATTATTGGTTTTGTTGGAAA+TGG + chr2.1:59932958-59932977 MS.gene00066:intron 25.0%
!!! ATTTTTTTCTTACAGTTCCA+TGG - chr2.1:59931278-59931297 None:intergenic 25.0%
!!! CATTAGAAAACTTGTTATCA+GGG - chr2.1:59931933-59931952 None:intergenic 25.0%
!!! CTCTATAATTTTAATACCTG+TGG + chr2.1:59933263-59933282 MS.gene00066:intron 25.0%
!!! TCATTAGAAAACTTGTTATC+AGG - chr2.1:59931934-59931953 None:intergenic 25.0%
!!! TTGAAAATAGATGTTTTGGT+TGG + chr2.1:59932503-59932522 MS.gene00066:intron 25.0%
AACCATCTTCTAAATCATTC+AGG + chr2.1:59933075-59933094 MS.gene00066:CDS 30.0%
AAGATTCAACCAATAAGACA+CGG - chr2.1:59934237-59934256 None:intergenic 30.0%
AATTATTCATAAGCCTGTCA+AGG - chr2.1:59932176-59932195 None:intergenic 30.0%
ACTAGCATTATATACAAACC+AGG + chr2.1:59934403-59934422 MS.gene00066:intron 30.0%
ACTAGGAAATATTAGAAGCA+GGG - chr2.1:59933877-59933896 None:intergenic 30.0%
AGATATATGTTTAGCCACTT+TGG + chr2.1:59934042-59934061 MS.gene00066:intron 30.0%
ATAGATGTAGTTTCCTGTAT+TGG + chr2.1:59933189-59933208 MS.gene00066:intron 30.0%
ATAGTTGGGGATACAAATAA+GGG - chr2.1:59933376-59933395 None:intergenic 30.0%
ATCATTTAACAGAACCAAAG+TGG - chr2.1:59934059-59934078 None:intergenic 30.0%
CAAACAACTGAAAATTGGAA+AGG - chr2.1:59932854-59932873 None:intergenic 30.0%
CTAATCACATATCTTCTATG+TGG + chr2.1:59934201-59934220 MS.gene00066:intron 30.0%
GAAATTGTAACCTTTGAATC+GGG - chr2.1:59931047-59931066 None:intergenic 30.0%
GAGTTTGATAGGGTAATTAT+TGG + chr2.1:59932943-59932962 MS.gene00066:intron 30.0%
GATATGACATATCAGATTGA+TGG - chr2.1:59931357-59931376 None:intergenic 30.0%
TACATCCTGTTATCTCATTT+AGG + chr2.1:59932786-59932805 MS.gene00066:intron 30.0%
TACCTGAATGATTTAGAAGA+TGG - chr2.1:59933080-59933099 None:intergenic 30.0%
TACTAGGAAATATTAGAAGC+AGG - chr2.1:59933878-59933897 None:intergenic 30.0%
TAGTGAAACTGTAAAATGAC+AGG + chr2.1:59933938-59933957 MS.gene00066:intron 30.0%
TATAGTTGGGGATACAAATA+AGG - chr2.1:59933377-59933396 None:intergenic 30.0%
TATTTGTATCCCCAACTATA+TGG + chr2.1:59933377-59933396 MS.gene00066:intron 30.0%
TCACAAGATAAAAAAAGAGG+GGG - chr2.1:59933130-59933149 None:intergenic 30.0%
TCACTATTGGAATTGTACAA+TGG - chr2.1:59933924-59933943 None:intergenic 30.0%
TGCTAAAGTAGAGTTTGATA+GGG + chr2.1:59932933-59932952 MS.gene00066:intron 30.0%
TTCTGTAGATACTTACTACT+AGG - chr2.1:59933894-59933913 None:intergenic 30.0%
TTGCTAAAGTAGAGTTTGAT+AGG + chr2.1:59932932-59932951 MS.gene00066:intron 30.0%
! AAAATATCTCTGTGATTTGG+TGG + chr2.1:59931398-59931417 MS.gene00066:intron 30.0%
! ATATAGACATAGGGTTTGTT+TGG + chr2.1:59932034-59932053 MS.gene00066:intron 30.0%
! GATTATCTTTTTGCATGAAC+AGG + chr2.1:59931213-59931232 MS.gene00066:CDS 30.0%
! GTTATTGTTGTTGTAGGATT+CGG + chr2.1:59931117-59931136 MS.gene00066:intron 30.0%
! TCAGATTGATGGTTTCTTAT+TGG - chr2.1:59931346-59931365 None:intergenic 30.0%
! TGGAATGTGATGTGTTTTAT+TGG + chr2.1:59932533-59932552 MS.gene00066:intron 30.0%
! TGTGATCCATGAAACATTTT+AGG - chr2.1:59933640-59933659 None:intergenic 30.0%
! TTTTCATAAACTACCTTGAC+AGG + chr2.1:59932160-59932179 MS.gene00066:intron 30.0%
!! CATGCTTTTAATTCAAGTGT+CGG + chr2.1:59931884-59931903 MS.gene00066:intron 30.0%
!! TTGATAATGATGATGAGAAG+AGG + chr2.1:59931511-59931530 MS.gene00066:intron 30.0%
!!! AAACTGTTTTTTTACGGTGT+TGG + chr2.1:59931451-59931470 MS.gene00066:intron 30.0%
!!! AGGGTAATTATTGGTTTTGT+TGG + chr2.1:59932952-59932971 MS.gene00066:intron 30.0%
!!! GTTTTATTGGTGTTGGATTA+GGG + chr2.1:59932546-59932565 MS.gene00066:intron 30.0%
!!! TGTTTTATTGGTGTTGGATT+AGG + chr2.1:59932545-59932564 MS.gene00066:intron 30.0%
ACACACAAATGAATCATGTC+TGG - chr2.1:59933710-59933729 None:intergenic 35.0%
ACTCACCTAAATGAGATAAC+AGG - chr2.1:59932794-59932813 None:intergenic 35.0%
AGAATAACGGTACATAACTC+AGG + chr2.1:59933851-59933870 MS.gene00066:intron 35.0%
ATAGAGAGCGAGCAATTTAA+CGG - chr2.1:59931015-59931034 None:intergenic 35.0%
ATTATGCTGAGAGACAACTT+AGG + chr2.1:59931624-59931643 MS.gene00066:CDS 35.0%
ATTTGAGAGCTGCAAACAAA+TGG - chr2.1:59933430-59933449 None:intergenic 35.0%
ATTTGGAAGTGATTGGATGT+TGG + chr2.1:59931542-59931561 MS.gene00066:intron 35.0%
ATTTGTTTGCAGCTCTCAAA+TGG + chr2.1:59933429-59933448 MS.gene00066:intron 35.0%
CACACAAATGAATCATGTCT+GGG - chr2.1:59933709-59933728 None:intergenic 35.0%
CATATACAAATATGACCCAC+AGG - chr2.1:59933282-59933301 None:intergenic 35.0%
CTGTGGGTCATATTTGTATA+TGG + chr2.1:59933280-59933299 MS.gene00066:intron 35.0%
GATATCTCTCAGACAAATCT+TGG - chr2.1:59932605-59932624 None:intergenic 35.0%
GTGGAATACTAGATGATCAT+TGG + chr2.1:59931417-59931436 MS.gene00066:intron 35.0%
GTTCACACACAAATAACATG+TGG - chr2.1:59934307-59934326 None:intergenic 35.0%
GTTTCATGGATCACATATGT+TGG + chr2.1:59933645-59933664 MS.gene00066:intron 35.0%
TAAATCATTCAGGTAAGCTC+TGG + chr2.1:59933085-59933104 MS.gene00066:intron 35.0%
TGTTGGACACTAATATGTGT+CGG + chr2.1:59931852-59931871 MS.gene00066:intron 35.0%
TTATTCCTTGACATGTACCT+AGG + chr2.1:59932402-59932421 MS.gene00066:intron 35.0%
TTGAAGTATACTAATGCTGG+TGG + chr2.1:59931250-59931269 MS.gene00066:CDS 35.0%
! AAGATGATCATGGTTCTGTT+TGG - chr2.1:59932256-59932275 None:intergenic 35.0%
! GTGTCTTATTGGTTGAATCT+TGG + chr2.1:59934236-59934255 MS.gene00066:intron 35.0%
!! ATACAAATAAGGGCACTAGT+TGG - chr2.1:59933366-59933385 None:intergenic 35.0%
!! GCATGAACAGGATTTTAATG+AGG + chr2.1:59931225-59931244 MS.gene00066:CDS 35.0%
!! GTGATGTGTTTTATTGGTGT+TGG + chr2.1:59932539-59932558 MS.gene00066:intron 35.0%
!! TACAAATAAGGGCACTAGTT+GGG - chr2.1:59933365-59933384 None:intergenic 35.0%
!! TCTACTAGTTTGCTCTTGAA+TGG + chr2.1:59932627-59932646 MS.gene00066:CDS 35.0%
!!! ATGTTTTGGTTGGTTGAGTT+TGG + chr2.1:59932513-59932532 MS.gene00066:intron 35.0%
!!! TAGTTTTGTGACCTACTTGA+AGG - chr2.1:59933612-59933631 None:intergenic 35.0%
AAATGGCTCATAGCTCTCAA+AGG - chr2.1:59933337-59933356 None:intergenic 40.0%
ACAAGATTTGCCAGTGTTTC+TGG - chr2.1:59933032-59933051 None:intergenic 40.0%
ACCAATAAGACACGGAAGAA+AGG - chr2.1:59934229-59934248 None:intergenic 40.0%
CGATCGCGAGTATTAAAGAA+TGG + chr2.1:59931140-59931159 MS.gene00066:CDS 40.0%
CTCAGAACTGCAATGCAATT+TGG - chr2.1:59933674-59933693 None:intergenic 40.0%
CTCATTTAGGTGAGTGTTTG+TGG + chr2.1:59932799-59932818 MS.gene00066:intron 40.0%
GATTGAATGGATCAGCATGT+TGG + chr2.1:59931835-59931854 MS.gene00066:intron 40.0%
GCATAAACTAAGCATAGTCC+TGG - chr2.1:59934424-59934443 None:intergenic 40.0%
GCGTTGAAGTATACTAATGC+TGG + chr2.1:59931247-59931266 MS.gene00066:CDS 40.0%
GGTCTTGCTAACGTATGTTA+AGG - chr2.1:59932335-59932354 None:intergenic 40.0%
GTTGGACACTAATATGTGTC+GGG + chr2.1:59931853-59931872 MS.gene00066:intron 40.0%
GTTGTATGCTGTCTTCATCT+TGG + chr2.1:59933050-59933069 MS.gene00066:CDS 40.0%
TCTTGACCAGTACATGATCT+GGG - chr2.1:59934523-59934542 None:intergenic 40.0%
TGTGAGGATTTGGAAGTGAT+TGG + chr2.1:59931535-59931554 MS.gene00066:intron 40.0%
TTACTCAGCTTGCAAATGCT+TGG + chr2.1:59931678-59931697 MS.gene00066:CDS 40.0%
TTTCTCATCACCCGATTCAA+AGG + chr2.1:59931034-59931053 MS.gene00066:CDS 40.0%
! AAACTCGTTGTGATTTGTGC+AGG + chr2.1:59932995-59933014 MS.gene00066:intron 40.0%
! AGATCATGTACTGGTCAAGA+GGG + chr2.1:59934523-59934542 MS.gene00066:CDS 40.0%
! ATGTAGTTTCCTGTATTGGC+CGG + chr2.1:59933193-59933212 MS.gene00066:intron 40.0%
! GACATAGGGTTTGTTTGGAT+TGG + chr2.1:59932039-59932058 MS.gene00066:intron 40.0%
! GATCATGGTTCTGTTTGGAT+TGG - chr2.1:59932251-59932270 None:intergenic 40.0%
! TGATGAAGCTGAGACTCTTT+TGG + chr2.1:59932683-59932702 MS.gene00066:CDS 40.0%
! TGCAAATGCTTGGCTTGATT+TGG + chr2.1:59931688-59931707 MS.gene00066:CDS 40.0%
!! ACAAATAAGGGCACTAGTTG+GGG - chr2.1:59933364-59933383 None:intergenic 40.0%
!! AGGAGCAGAATCGTTGATTT+CGG - chr2.1:59930979-59930998 None:intergenic 40.0%
!! TAGTTTGCTCTTGAATGGCA+AGG + chr2.1:59932632-59932651 MS.gene00066:CDS 40.0%
!! TATTGGTGTTGGATTAGGGA+GGG + chr2.1:59932550-59932569 MS.gene00066:intron 40.0%
!! TTATTGGTGTTGGATTAGGG+AGG + chr2.1:59932549-59932568 MS.gene00066:intron 40.0%
!!! CTGTTTTTTTACGGTGTTGG+TGG + chr2.1:59931454-59931473 MS.gene00066:intron 40.0%
AAGATTTCACCGGCCAATAC+AGG - chr2.1:59933205-59933224 None:intergenic 45.0%
AAGTGCCTAGGTACATGTCA+AGG - chr2.1:59932410-59932429 None:intergenic 45.0%
ACCCATAAGTGCACTAGTTG+GGG - chr2.1:59933315-59933334 None:intergenic 45.0%
CACTAATATGTGTCGGGACT+CGG + chr2.1:59931859-59931878 MS.gene00066:intron 45.0%
CTCTTGACCAGTACATGATC+TGG - chr2.1:59934524-59934543 None:intergenic 45.0%
GACCCATAAGTGCACTAGTT+GGG - chr2.1:59933316-59933335 None:intergenic 45.0%
GAGAAGAGGATGTGAGGATT+TGG + chr2.1:59931525-59931544 MS.gene00066:intron 45.0%
GATGATGAGAAGAGGATGTG+AGG + chr2.1:59931519-59931538 MS.gene00066:intron 45.0%
GCAAATGCTAACAAGTGCCT+AGG - chr2.1:59932422-59932441 None:intergenic 45.0%
GCACTAGTTGGGGATACAAA+TGG - chr2.1:59933354-59933373 None:intergenic 45.0%
GCCTTTCTTCCGTGTCTTAT+TGG + chr2.1:59934225-59934244 MS.gene00066:intron 45.0%
GTAGCATTGTTCCCAATTGC+AGG - chr2.1:59931175-59931194 None:intergenic 45.0%
TACTAATGCTGGTGGAACCA+TGG + chr2.1:59931258-59931277 MS.gene00066:CDS 45.0%
TAGAGTTGGGTCCTTCAAGT+AGG + chr2.1:59933598-59933617 MS.gene00066:intron 45.0%
TATCGTTGCTACATCGCTCT+TGG + chr2.1:59930933-59930952 MS.gene00066:CDS 45.0%
TCCCCAACTAGTGCACTTAT+GGG + chr2.1:59933311-59933330 MS.gene00066:intron 45.0%
TGACCCATAAGTGCACTAGT+TGG - chr2.1:59933317-59933336 None:intergenic 45.0%
TTAACGGCTTGAAGAGACGT+AGG - chr2.1:59930999-59931018 None:intergenic 45.0%
TTCACACCCAGATCATGTAC+TGG + chr2.1:59934514-59934533 MS.gene00066:CDS 45.0%
TTGGGAACAATGCTACGTTG+AGG + chr2.1:59931179-59931198 MS.gene00066:CDS 45.0%
! AAGGACCCAACTCTAGAAGA+GGG - chr2.1:59933593-59933612 None:intergenic 45.0%
! CAGATCATGTACTGGTCAAG+AGG + chr2.1:59934522-59934541 MS.gene00066:CDS 45.0%
! GCTGTTTGCTGCATGCAAAT+GGG + chr2.1:59932654-59932673 MS.gene00066:CDS 45.0%
! GTGATTTGTGCAGGATGCTA+GGG + chr2.1:59933004-59933023 MS.gene00066:intron 45.0%
! TGAAGCTGAGACTCTTTTGG+TGG + chr2.1:59932686-59932705 MS.gene00066:CDS 45.0%
! TGTGATTTGTGCAGGATGCT+AGG + chr2.1:59933003-59933022 MS.gene00066:intron 45.0%
!! ATTGGTGTTGGATTAGGGAG+GGG + chr2.1:59932551-59932570 MS.gene00066:intron 45.0%
!! TTTGGTGGAAGCACTCAACA+AGG + chr2.1:59932701-59932720 MS.gene00066:CDS 45.0%
AGTTGTTGCGGAGGTTGAAG+AGG - chr2.1:59930824-59930843 None:intergenic 50.0%
CACCGAGGTAGAAGTTGTTG+CGG - chr2.1:59930836-59930855 None:intergenic 50.0%
CTCCCCAACTAGTGCACTTA+TGG + chr2.1:59933310-59933329 MS.gene00066:intron 50.0%
CTCCGCAACAACTTCTACCT+CGG + chr2.1:59930831-59930850 MS.gene00066:CDS 50.0%
CTGGGTGTGAAAGTTTCAGC+TGG - chr2.1:59934505-59934524 None:intergenic 50.0%
GGAAGATCAAATGCGCCTCT+TGG - chr2.1:59932584-59932603 None:intergenic 50.0%
GGCTTGCAGATCCTGCAATT+GGG + chr2.1:59931161-59931180 MS.gene00066:CDS 50.0%
GTCGCGTTCGATTATGTCGT+CGG - chr2.1:59930904-59930923 None:intergenic 50.0%
TCGCGTTCGATTATGTCGTC+GGG - chr2.1:59930903-59930922 None:intergenic 50.0%
TGCTAGGGATCCAGAAACAC+TGG + chr2.1:59933019-59933038 MS.gene00066:CDS 50.0%
! GAAGGACCCAACTCTAGAAG+AGG - chr2.1:59933594-59933613 None:intergenic 50.0%
! GGCTGTTTGCTGCATGCAAA+TGG + chr2.1:59932653-59932672 MS.gene00066:CDS 50.0%
! TGGCTTGCAGATCCTGCAAT+TGG + chr2.1:59931160-59931179 MS.gene00066:CDS 50.0%
!! CCACACCCTCTTCTAGAGTT+GGG + chr2.1:59933585-59933604 MS.gene00066:intron 50.0%
!! CTACGTTGAGGCTTGTTGCT+GGG + chr2.1:59931191-59931210 MS.gene00066:CDS 50.0%
!! TCCACACCCTCTTCTAGAGT+TGG + chr2.1:59933584-59933603 MS.gene00066:intron 50.0%
!! TGCTTGGCTTGATTTGGCTG+TGG + chr2.1:59931694-59931713 MS.gene00066:CDS 50.0%
CGAGGTAGAAGTTGTTGCGG+AGG - chr2.1:59930833-59930852 None:intergenic 55.0%
CGATTATGTCGTCGGGAGAG+AGG - chr2.1:59930896-59930915 None:intergenic 55.0%
CGGAGGTTGAAGAGGTGATC+TGG - chr2.1:59930816-59930835 None:intergenic 55.0%
TATGTCGTCGGGAGAGAGGT+TGG - chr2.1:59930892-59930911 None:intergenic 55.0%
TTGCAGCTTGGTATGCACCG+AGG - chr2.1:59930851-59930870 None:intergenic 55.0%
! CCCAACTCTAGAAGAGGGTG+TGG - chr2.1:59933588-59933607 None:intergenic 55.0%
! CGCTGCTGTTGATTGCAGCT+TGG - chr2.1:59930863-59930882 None:intergenic 55.0%
!! GCTACGTTGAGGCTTGTTGC+TGG + chr2.1:59931190-59931209 MS.gene00066:CDS 55.0%
GGGAGGGGCGAAGATCCAAG+AGG + chr2.1:59932566-59932585 MS.gene00066:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 59930804 59934595 59930804 ID=MS.gene00066
chr2.1 mRNA 59930804 59934595 59930804 ID=MS.gene00066.t1;Parent=MS.gene00066
chr2.1 exon 59930804 59931055 59930804 ID=MS.gene00066.t1.exon1;Parent=MS.gene00066.t1
chr2.1 CDS 59930804 59931055 59930804 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
chr2.1 exon 59931133 59931284 59931133 ID=MS.gene00066.t1.exon2;Parent=MS.gene00066.t1
chr2.1 CDS 59931133 59931284 59931133 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
chr2.1 exon 59931580 59931715 59931580 ID=MS.gene00066.t1.exon3;Parent=MS.gene00066.t1
chr2.1 CDS 59931580 59931715 59931580 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
chr2.1 exon 59932567 59932722 59932567 ID=MS.gene00066.t1.exon4;Parent=MS.gene00066.t1
chr2.1 CDS 59932567 59932722 59932567 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
chr2.1 exon 59933017 59933096 59933017 ID=MS.gene00066.t1.exon5;Parent=MS.gene00066.t1
chr2.1 CDS 59933017 59933096 59933017 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
chr2.1 exon 59934502 59934595 59934502 ID=MS.gene00066.t1.exon6;Parent=MS.gene00066.t1
chr2.1 CDS 59934502 59934595 59934502 ID=cds.MS.gene00066.t1;Parent=MS.gene00066.t1
Gene Sequence

>MS.gene00066

ATGGCAACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGTTACAATTTCTCATCTTTCTCAATTTCTCTTCAATTTGTTGAATTTCTCGTCAATTTATCGTTATTGTTGTTGTAGGATTCGGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTTAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGTAAGAAAAAAATGCATTTTTTATACACTGACTGTGTAAAATAACATTACGCTGTAATCCAATAAGAAACCATCAATCTGATATGTCATATCAATATCATACAACTAATTTTAAAAATATCTCTGTGATTTGGTGGAATACTAGATGATCATTGGATGTTAGTGTAAAACTGTTTTTTTACGGTGTTGGTGGATCTAATGTTTTCTCTTGATTTATTATTTCAATTTTGATAATGATGATGAGAAGAGGATGTGAGGATTTGGAAGTGATTGGATGTTGGTTTTGTGTTTTTTAGGACTGCTTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAACTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGTAATTTTTAACATAAGTATTATTATTTGCCTTATTATTGAAAATGTTGATGAAAGGGCATGAATGTAAGACTTGATACTGACATATAGACACTGATAATAATTTTAAAAATTGGAAGTGATTGAATGGATCAGCATGTTGGACACTAATATGTGTCGGGACTCGGAACATGCTTTTAATTCAAGTGTCGGTGCTATGTAGATTATTATTAGGGCCCTGATAACAAGTTTTCTAATGACACATGTTAAGAAATCAATTATGATCTTGAAAAGAACGTTTTTTTAACTTTTAAATGTAGGGCACATGTTAAAAAATTCAATATAGACATAGGGTTTGTTTGGATTGGCTTATTTTTTAGCTAATGAAAAATAGATTATGCAAGTAAATAAGTTTTTATGGCAATTCATAGTTTTAACTAATGAAAATTGTATCTTCGTAATCTGTTTTTCATAAACTACCTTGACAGGCTTATGAATAATTCATAAAAGGTTACTTATTTGCGTAAGCTGTTTTGCATAAGCTAAAAACTAAGCCAATCCAAACAGAACCATGATCATCTTAAAAGTTTAAAAAGTTTAAAAATTGTTTTTTCAATGCAAAATTTCTATTTTTGGTTCCTTAACATACGTTAGCAAGACCCTTTAAGAAATTCAATACATCAGTTTGAAGACAATATTTCTATTTTTTTATTCCTTGACATGTACCTAGGCACTTGTTAGCATTTGCCTTATTATTATTACTTGATGAAACGAAAAGTGTCTTTTTTTATATAAAAAGAAAGAAAGATTTGAAAATAGATGTTTTGGTTGGTTGAGTTTGGAATGTGATGTGTTTTATTGGTGTTGGATTAGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGCACGTTTGTTTTGCATTGCATTGCTTATTCGTTTCAGTTTCATTTGACTAAACTTTTGATATTACATCCTGTTATCTCATTTAGGTGAGTGTTTGTGGTTGTCCAAAACTTTTAATGTTTGATAATGCCTTTCCAATTTTCAGTTGTTTGATATTCTTTCAAATGAAGATTGAAATTCTGTTGGCTCTTTAGTTTAAATCTTTAGGCTTTGCTAAAGTAGAGTTTGATAGGGTAATTATTGGTTTTGTTGGAAATGGTTTTTGTGCTTAAGAAACTCGTTGTGATTTGTGCAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGGTAAGCTCTGGACATCTTTATTGTTTGCAACCCCCTCTTTTTTTATCTTGTGATTTTTTTTGTTGTTTTTTATTGAAAATATATATCTTAGCATAGATGTAGTTTCCTGTATTGGCCGGTGAAATCTTTTTGTTACTTGTAATAATTTTACTAAATTCTGAATCAACTCTATAATTTTAATACCTGTGGGTCATATTTGTATATGGAATTTGTCTCCCCAACTAGTGCACTTATGGGTCATTGAGAGCTATGAGCCATTTGTATCCCCAACTAGTGCCCTTATTTGTATCCCCAACTATATGGAATTTTAATACCTTTGAGAGCTATGAGCCATTTGTTTGCAGCTCTCAAATGGAAAACAATAGCAGTTGTTAATGAAATTAATTAAACGATAGCTCTTTCAATTAAAAACTTTGGAATATAGGGCTAGATTTTATATGAATGCATATCATTAAAATCTTTTGGGTTTAGAATGGTATGATCTGTTTCCACACCCTCTTCTAGAGTTGGGTCCTTCAAGTAGGTCACAAAACTATTAAACCTAAAATGTTTCATGGATCACATATGTTGGAAACCAAATTGCATTGCAGTTCTGAGTTTGTCTTGTTTCCCAGACATGATTCATTTGTGTGTCAAATCTCACTTAAACTGTTTCATTACTGAACTATTTACATTCTAAATATGTCATTCAATAATCAGTAGTAAATAGTGTTACTAATCACTAATAGTGATTAATAACATAACATCATTTGTAAGAATAACGGTACATAACTCAGGCCCTGCTTCTAATATTTCCTAGTAGTAAGTATCTACAGAATCAAATACCATTGTACAATTCCAATAGTGAAACTGTAAAATGACAGGTCCAAAACTCTATTATCATATATATCTAATATAGAAAATAGTCTAATATAGAAAATAGAAAATGTGTTATACATTTTATTAAGATATATGTTTAGCCACTTTGGTTCTGTTAAATGATTTATTTACTCTTCAAATATGAACCAGACTGTGATACTTATATTTTGTTGTCCTCTTTAATTTACGCTGTAAATAGTTTGCATCAGTAAAATCTATGAAATGAATGCATCTTGAGTTTGATAGCTAATCACATATCTTCTATGTGGAGCCTTTCTTCCGTGTCTTATTGGTTGAATCTTGGATATCTGATTATGTATTTCTTGGTTCAATATTATGCAATGTTACACCACATGTTATTTGTGTGTGAACATTTTGCAGTTTACTCTCATTGTAAGTGTCAAACATATGTAGTAATGAATCTTTTTTAAATATTGTTTATGTTTCTACTAGCATTATATACAAACCAGGACTATGCTTAGTTTATGCGATTGAGAAAGAAGATTTTCCATTAGTGAGTAACTTGTAAATGTGCACTGTTTTGCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA
Protein sequence

>MS.gene00066.t1

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKDSAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS