Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55904.t1 | XP_013463088.1 | 98.6 | 289 | 4 | 0 | 1 | 289 | 1 | 289 | 3.20E-157 | 564.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55904.t1 | Q9SA78 | 75.3 | 287 | 71 | 0 | 1 | 287 | 4 | 290 | 2.5e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55904.t1 | Q5QQ34 | 98.6 | 289 | 4 | 0 | 1 | 289 | 1 | 289 | 2.3e-157 | 564.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene55904 | 0.804576 | 2.02E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene55904 | 0.870982 | 9.66E-67 | -1.69E-46 |
| MS.gene049887 | MS.gene55904 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene55904 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene55904 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene55904 | 0.812802 | 3.53E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene55904 | 0.82337 | 1.44E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene55904 | 0.876849 | 1.01E-68 | -1.69E-46 |
| MS.gene050945 | MS.gene55904 | 0.834808 | 2.42E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene55904 | 0.84219 | 3.01E-58 | -1.69E-46 |
| MS.gene051043 | MS.gene55904 | 0.8136 | 2.36E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene55904 | 0.891507 | 3.73E-74 | -1.69E-46 |
| MS.gene051343 | MS.gene55904 | 0.846753 | 1.78E-59 | -1.69E-46 |
| MS.gene051381 | MS.gene55904 | 0.832298 | 1.02E-55 | -1.69E-46 |
| MS.gene051642 | MS.gene55904 | 0.817697 | 2.88E-52 | -1.69E-46 |
| MS.gene051885 | MS.gene55904 | 0.859115 | 5.17E-63 | -1.69E-46 |
| MS.gene052016 | MS.gene55904 | 0.802253 | 6.13E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene55904 | 0.839987 | 1.14E-57 | -1.69E-46 |
| MS.gene052242 | MS.gene55904 | -0.813877 | 2.05E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene55904 | 0.8134 | 2.61E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene55904 | 0.851574 | 8.12E-61 | -1.69E-46 |
| MS.gene052514 | MS.gene55904 | 0.811086 | 8.34E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene55904 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene55904 | 0.831988 | 1.22E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene55904 | 0.811246 | 7.70E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene55904 | 0.893787 | 4.54E-75 | -1.69E-46 |
| MS.gene053144 | MS.gene55904 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene053171 | MS.gene55904 | 0.818049 | 2.40E-52 | -1.69E-46 |
| MS.gene053564 | MS.gene55904 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene55904 | 0.842232 | 2.93E-58 | -1.69E-46 |
| MS.gene054004 | MS.gene55904 | 0.807527 | 4.84E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene55904 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene55904 | 0.821456 | 4.00E-53 | -1.69E-46 |
| MS.gene054554 | MS.gene55904 | 0.84216 | 3.06E-58 | -1.69E-46 |
| MS.gene054585 | MS.gene55904 | 0.831923 | 1.27E-55 | -1.69E-46 |
| MS.gene054824 | MS.gene55904 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene055220 | MS.gene55904 | 0.80102 | 1.10E-48 | -1.69E-46 |
| MS.gene055221 | MS.gene55904 | 0.825521 | 4.48E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene55904 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene55904 | 0.828569 | 8.36E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene55904 | 0.830155 | 3.44E-55 | -1.69E-46 |
| MS.gene055765 | MS.gene55904 | 0.817525 | 3.15E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene55904 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene056578 | MS.gene55904 | 0.802867 | 4.58E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene55904 | 0.825426 | 4.72E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene55904 | 0.827446 | 1.56E-54 | -1.69E-46 |
| MS.gene057584 | MS.gene55904 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene55904 | 0.810879 | 9.26E-51 | -1.69E-46 |
| MS.gene058149 | MS.gene55904 | 0.8102 | 1.30E-50 | -1.69E-46 |
| MS.gene058210 | MS.gene55904 | 0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene55904 | 0.849801 | 2.56E-60 | -1.69E-46 |
| MS.gene058668 | MS.gene55904 | 0.800377 | 1.48E-48 | -1.69E-46 |
| MS.gene05870 | MS.gene55904 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene058720 | MS.gene55904 | 0.809192 | 2.14E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene55904 | 0.811531 | 6.68E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene55904 | 0.82985 | 4.09E-55 | -1.69E-46 |
| MS.gene059170 | MS.gene55904 | 0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene55904 | 0.830102 | 3.55E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene55904 | 0.83897 | 2.10E-57 | -1.69E-46 |
| MS.gene059778 | MS.gene55904 | 0.832738 | 7.97E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene55904 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene060343 | MS.gene55904 | -0.83197 | 1.23E-55 | -1.69E-46 |
| MS.gene061006 | MS.gene55904 | 0.832633 | 8.46E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene55904 | 0.88374 | 3.48E-71 | -1.69E-46 |
| MS.gene061160 | MS.gene55904 | 0.82491 | 6.25E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55904 | MS.gene005784 | PPI |
| MS.gene55904 | MS.gene003672 | PPI |
| MS.gene55904 | MS.gene68093 | PPI |
| MS.gene003673 | MS.gene55904 | PPI |
| MS.gene032230 | MS.gene55904 | PPI |
| MS.gene55904 | MS.gene062888 | PPI |
| MS.gene55904 | MS.gene23325 | PPI |
| MS.gene00066 | MS.gene55904 | PPI |
| MS.gene55904 | MS.gene50735 | PPI |
| MS.gene21432 | MS.gene55904 | PPI |
| MS.gene55904 | MS.gene67881 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55904.t1 | MTR_2g032130 | 98.616 | 289 | 4 | 0 | 1 | 289 | 1 | 289 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55904.t1 | AT1G30630 | 74.740 | 289 | 73 | 0 | 1 | 289 | 4 | 292 | 2.05e-169 | 471 |
| MS.gene55904.t1 | AT2G34840 | 75.347 | 288 | 71 | 0 | 2 | 289 | 6 | 293 | 2.13e-169 | 471 |
| MS.gene55904.t1 | AT2G34840 | 75.701 | 214 | 52 | 0 | 76 | 289 | 1 | 214 | 1.26e-125 | 357 |
Find 56 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGATTTGCCAGTGTTTC+TGG | 0.104502 | 2.3:-58021028 | None:intergenic |
| TGCAAATGCTTGGCTTGATT+TGG | 0.285359 | 2.3:+58019685 | MS.gene55904:CDS |
| TGATGAAGCTGAGACTCTTT+TGG | 0.330291 | 2.3:+58020682 | MS.gene55904:CDS |
| AACCATCTTCTAAATCATTC+AGG | 0.343553 | 2.3:+58021074 | MS.gene55904:CDS |
| GTAGCATTGTTCCCAATTGC+AGG | 0.373136 | 2.3:-58019168 | None:intergenic |
| GCTACGTTGAGGCTTGTTGC+TGG | 0.380071 | 2.3:+58019186 | MS.gene55904:CDS |
| TGGCTTGCAGATCCTGCAAT+TGG | 0.388117 | 2.3:+58019156 | MS.gene55904:CDS |
| GATATCTCTCAGACAAATCT+TGG | 0.389822 | 2.3:-58020601 | None:intergenic |
| TACCTGAATGATTTAGAAGA+TGG | 0.403328 | 2.3:-58021076 | None:intergenic |
| AGGAGCAGAATCGTTGATTT+CGG | 0.403329 | 2.3:-58018972 | None:intergenic |
| GGAAGATCAAATGCGCCTCT+TGG | 0.403390 | 2.3:-58020580 | None:intergenic |
| GTTGTATGCTGTCTTCATCT+TGG | 0.408937 | 2.3:+58021049 | MS.gene55904:CDS |
| CTCTTGACCAGTACATGATC+TGG | 0.409709 | 2.3:-58022454 | None:intergenic |
| GGCTGTTTGCTGCATGCAAA+TGG | 0.409788 | 2.3:+58020652 | MS.gene55904:CDS |
| ATAGAGAGCGAGCAATTTAA+CGG | 0.433280 | 2.3:-58019008 | None:intergenic |
| TCTACTAGTTTGCTCTTGAA+TGG | 0.434996 | 2.3:+58020626 | MS.gene55904:CDS |
| CGCTGCTGTTGATTGCAGCT+TGG | 0.447662 | 2.3:-58018856 | None:intergenic |
| TTACTCAGCTTGCAAATGCT+TGG | 0.460646 | 2.3:+58019675 | MS.gene55904:CDS |
| TGAAATTGTAACCTTTGAAT+CGG | 0.463883 | 2.3:-58019041 | None:intergenic |
| TATGTCGTCGGGAGAGAGGT+TGG | 0.471135 | 2.3:-58018885 | None:intergenic |
| GGCTTGCAGATCCTGCAATT+GGG | 0.471416 | 2.3:+58019157 | MS.gene55904:CDS |
| TATCGTTGCTACATCGCTCT+TGG | 0.471667 | 2.3:+58018929 | MS.gene55904:CDS |
| TGTGATTTGTGCAGGATGCT+AGG | 0.494756 | 2.3:+58021002 | MS.gene55904:intron |
| CTACGTTGAGGCTTGTTGCT+GGG | 0.494907 | 2.3:+58019187 | MS.gene55904:CDS |
| CGGAGGTTGAAGAGGTGATC+TGG | 0.496215 | 2.3:-58018809 | None:intergenic |
| CTGGGTGTGAAAGTTTCAGC+TGG | 0.516866 | 2.3:-58022435 | None:intergenic |
| GTCGCGTTCGATTATGTCGT+CGG | 0.519121 | 2.3:-58018897 | None:intergenic |
| TGCTTGGCTTGATTTGGCTG+TGG | 0.525363 | 2.3:+58019691 | MS.gene55904:CDS |
| AGTTGTTGCGGAGGTTGAAG+AGG | 0.528845 | 2.3:-58018817 | None:intergenic |
| GAAATTGTAACCTTTGAATC+GGG | 0.529238 | 2.3:-58019040 | None:intergenic |
| TTTCTCATCACCCGATTCAA+AGG | 0.531346 | 2.3:+58019030 | MS.gene55904:CDS |
| TCGCGTTCGATTATGTCGTC+GGG | 0.546258 | 2.3:-58018896 | None:intergenic |
| CTCCGCAACAACTTCTACCT+CGG | 0.548277 | 2.3:+58018827 | MS.gene55904:CDS |
| CGATTATGTCGTCGGGAGAG+AGG | 0.551111 | 2.3:-58018889 | None:intergenic |
| CGATCGCGAGTATTAAAGAA+TGG | 0.554403 | 2.3:+58019136 | MS.gene55904:CDS |
| GTGATTTGTGCAGGATGCTA+GGG | 0.562390 | 2.3:+58021003 | MS.gene55904:intron |
| TAGTTTGCTCTTGAATGGCA+AGG | 0.567959 | 2.3:+58020631 | MS.gene55904:CDS |
| TCTTGACCAGTACATGATCT+GGG | 0.583999 | 2.3:-58022453 | None:intergenic |
| TGCTAGGGATCCAGAAACAC+TGG | 0.586587 | 2.3:+58021018 | MS.gene55904:CDS |
| ATTATGCTGAGAGACAGCTT+AGG | 0.588117 | 2.3:+58019621 | MS.gene55904:CDS |
| CAGATCATGTACTGGTCAAG+AGG | 0.589094 | 2.3:+58022455 | MS.gene55904:CDS |
| AAATCTTTATTAAGATGCAT+AGG | 0.590426 | 2.3:+58019594 | MS.gene55904:CDS |
| TTCACACCCAGATCATGTAC+TGG | 0.591368 | 2.3:+58022447 | MS.gene55904:CDS |
| GCTGTTTGCTGCATGCAAAT+GGG | 0.591850 | 2.3:+58020653 | MS.gene55904:CDS |
| CGAGGTAGAAGTTGTTGCGG+AGG | 0.594425 | 2.3:-58018826 | None:intergenic |
| TACTAATGCTGGTGGAACCA+TGG | 0.596370 | 2.3:+58019254 | MS.gene55904:CDS |
| GCGTTGAAGTATACTAATGC+TGG | 0.597020 | 2.3:+58019243 | MS.gene55904:CDS |
| CACCGAGGTAGAAGTTGTTG+CGG | 0.603080 | 2.3:-58018829 | None:intergenic |
| GCATGAACAGGATTTCAATG+AGG | 0.619909 | 2.3:+58019221 | MS.gene55904:CDS |
| TTTGGTGGAAGCACTCAACA+AGG | 0.627745 | 2.3:+58020700 | MS.gene55904:CDS |
| TTGAAGTATACTAATGCTGG+TGG | 0.633802 | 2.3:+58019246 | MS.gene55904:CDS |
| AGATCATGTACTGGTCAAGA+GGG | 0.649201 | 2.3:+58022456 | MS.gene55904:CDS |
| TTGGGAACAATGCTACGTTG+AGG | 0.655531 | 2.3:+58019175 | MS.gene55904:CDS |
| TTAACGGCTTGAAGAGACGT+AGG | 0.656056 | 2.3:-58018992 | None:intergenic |
| TTGCAGCTTGGTATGCACCG+AGG | 0.725254 | 2.3:-58018844 | None:intergenic |
| GGGAGGGGCGAAGATCCAAG+AGG | 0.749423 | 2.3:+58020565 | MS.gene55904:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTGATAATAATTTTAAAAAT+TGG | + | chr2.3:58019805-58019824 | MS.gene55904:intron | 10.0% |
| !!! | TTTTTTAACTTTTAAATGTA+GGG | + | chr2.3:58019991-58020010 | MS.gene55904:intron | 10.0% |
| !!! | TTTTTTTAACTTTTAAATGT+AGG | + | chr2.3:58019990-58020009 | MS.gene55904:intron | 10.0% |
| !! | AAAAAATTCAATATAGACAT+AGG | + | chr2.3:58020022-58020041 | MS.gene55904:intron | 15.0% |
| !! | AAAAATTCAATATAGACATA+GGG | + | chr2.3:58020023-58020042 | MS.gene55904:intron | 15.0% |
| !! | GATGTATTGAATTTATTAAA+GGG | - | chr2.3:58020355-58020374 | None:intergenic | 15.0% |
| !! | TGATGTATTGAATTTATTAA+AGG | - | chr2.3:58020356-58020375 | None:intergenic | 15.0% |
| !! | TTCATCAAGTAATAATAATA+AGG | - | chr2.3:58020443-58020462 | None:intergenic | 15.0% |
| !!! | TATATATGATAATAGAGTTT+TGG | - | chr2.3:58021834-58021853 | None:intergenic | 15.0% |
| !!! | TTATCAAACATTAAAAGTTT+TGG | - | chr2.3:58020828-58020847 | None:intergenic | 15.0% |
| !! | AAATCACAAGATAAAAAAAG+AGG | - | chr2.3:58021132-58021151 | None:intergenic | 20.0% |
| !! | AAATCTTTATTAAGATGCAT+AGG | + | chr2.3:58019594-58019613 | MS.gene55904:CDS | 20.0% |
| !! | AACATCATTTGTAAGAATAA+CGG | + | chr2.3:58021707-58021726 | MS.gene55904:intron | 20.0% |
| !! | AATATCAAACAACTGAAAAT+TGG | - | chr2.3:58020858-58020877 | None:intergenic | 20.0% |
| !! | AATCACAAGATAAAAAAAGA+GGG | - | chr2.3:58021131-58021150 | None:intergenic | 20.0% |
| !! | ATATCTGATTATGTATTTCT+TGG | + | chr2.3:58022192-58022211 | MS.gene55904:intron | 20.0% |
| !! | ATTAAACCTAAAATGTTTCA+TGG | + | chr2.3:58021500-58021519 | MS.gene55904:intron | 20.0% |
| !! | GCTTATGAATAATACATAAA+AGG | + | chr2.3:58020181-58020200 | MS.gene55904:intron | 20.0% |
| !! | TGCTATGTAGATTATTATTA+GGG | + | chr2.3:58019904-58019923 | MS.gene55904:intron | 20.0% |
| !! | TTAAAAATATCTCTGTGATT+TGG | + | chr2.3:58019392-58019411 | MS.gene55904:intron | 20.0% |
| !!! | AGTGTAAAACTGTTTTTTTA+CGG | + | chr2.3:58019442-58019461 | MS.gene55904:intron | 20.0% |
| !!! | CAATGCAAAATTTCTATTTT+TGG | + | chr2.3:58020306-58020325 | MS.gene55904:intron | 20.0% |
| !!! | CATCAACATTTTCAATAATA+AGG | - | chr2.3:58019745-58019764 | None:intergenic | 20.0% |
| !!! | GCATATCATTAAAATCTTTT+GGG | + | chr2.3:58021409-58021428 | MS.gene55904:intron | 20.0% |
| !!! | GCTCTTTAATTTAAATCTTT+AGG | + | chr2.3:58020906-58020925 | MS.gene55904:intron | 20.0% |
| !!! | TATTGAAAATGTTGATGAAA+GGG | + | chr2.3:58019748-58019767 | MS.gene55904:intron | 20.0% |
| !!! | TCTATAATTTTAATACCTGT+GGG | + | chr2.3:58021263-58021282 | MS.gene55904:intron | 20.0% |
| !!! | TGCAAGTAAATAAGTTTTTA+TGG | + | chr2.3:58020090-58020109 | MS.gene55904:intron | 20.0% |
| !!! | TGCATATCATTAAAATCTTT+TGG | + | chr2.3:58021408-58021427 | MS.gene55904:intron | 20.0% |
| !!! | TTAAACTTTTTAGATGATCA+TGG | - | chr2.3:58020265-58020284 | None:intergenic | 20.0% |
| !!! | TTATTGAAAATGTTGATGAA+AGG | + | chr2.3:58019747-58019766 | MS.gene55904:intron | 20.0% |
| !!! | TTTATCGTTATTGTTATTGT+AGG | + | chr2.3:58019107-58019126 | MS.gene55904:intron | 20.0% |
| ! | AAAAATTGGAAGTGATTGAA+TGG | + | chr2.3:58019819-58019838 | MS.gene55904:intron | 25.0% |
| ! | AATGAAGATTGAAATTCTGT+TGG | + | chr2.3:58020884-58020903 | MS.gene55904:intron | 25.0% |
| ! | ATCACAAGATAAAAAAAGAG+GGG | - | chr2.3:58021130-58021149 | None:intergenic | 25.0% |
| ! | ATTTACAAGTTACTCACTAA+TGG | - | chr2.3:58022399-58022418 | None:intergenic | 25.0% |
| ! | ATTTACAGCGTAAATTAAAG+AGG | - | chr2.3:58022065-58022084 | None:intergenic | 25.0% |
| ! | GCTCTTTCAATTAAAAACTT+TGG | + | chr2.3:58021360-58021379 | MS.gene55904:intron | 25.0% |
| ! | GTGCTATGTAGATTATTATT+AGG | + | chr2.3:58019903-58019922 | MS.gene55904:intron | 25.0% |
| ! | TGAAATTGTAACCTTTGAAT+CGG | - | chr2.3:58019044-58019063 | None:intergenic | 25.0% |
| !! | AAGTTTTTATGGCAATTCAT+AGG | + | chr2.3:58020101-58020120 | MS.gene55904:intron | 25.0% |
| !! | AGGTTTGAAAATAGATGTTT+TGG | + | chr2.3:58020498-58020517 | MS.gene55904:intron | 25.0% |
| !! | TCATTTTACAGTTTCACTAT+TGG | - | chr2.3:58021806-58021825 | None:intergenic | 25.0% |
| !!! | AAAATCTTTTGGGTTTAGAA+TGG | + | chr2.3:58021419-58021438 | MS.gene55904:intron | 25.0% |
| !!! | ATGTTGGTTTTGTGTTTTTT+AGG | + | chr2.3:58019555-58019574 | MS.gene55904:intron | 25.0% |
| !!! | ATTATTGGTTTTGTTGGAAA+TGG | + | chr2.3:58020957-58020976 | MS.gene55904:intron | 25.0% |
| !!! | CAAGTATTTTTGATTGCTAA+GGG | - | chr2.3:58022006-58022025 | None:intergenic | 25.0% |
| !!! | CATTAGAAAACTTGTTATCA+GGG | - | chr2.3:58019930-58019949 | None:intergenic | 25.0% |
| !!! | CTCTATAATTTTAATACCTG+TGG | + | chr2.3:58021262-58021281 | MS.gene55904:intron | 25.0% |
| !!! | TCAAGTATTTTTGATTGCTA+AGG | - | chr2.3:58022007-58022026 | None:intergenic | 25.0% |
| !!! | TCATTAGAAAACTTGTTATC+AGG | - | chr2.3:58019931-58019950 | None:intergenic | 25.0% |
| !!! | TTGAAAATAGATGTTTTGGT+TGG | + | chr2.3:58020502-58020521 | MS.gene55904:intron | 25.0% |
| !!! | TTTTTTTTCTTACAGTTCCA+TGG | - | chr2.3:58019274-58019293 | None:intergenic | 25.0% |
| AACCATCTTCTAAATCATTC+AGG | + | chr2.3:58021074-58021093 | MS.gene55904:CDS | 30.0% | |
| AAGATTCAACCAATAAGACA+CGG | - | chr2.3:58022170-58022189 | None:intergenic | 30.0% | |
| AAGTAACAAAAAGATTCCAC+CGG | - | chr2.3:58021214-58021233 | None:intergenic | 30.0% | |
| ACTAGCATTATATACAAACC+AGG | + | chr2.3:58022336-58022355 | MS.gene55904:intron | 30.0% | |
| ACTAGGAAATATTAGAAGCA+GGG | - | chr2.3:58021746-58021765 | None:intergenic | 30.0% | |
| ACTCATCTAAATGAGATAAC+AGG | - | chr2.3:58020793-58020812 | None:intergenic | 30.0% | |
| AGATATATGTTTAGCCACTT+TGG | + | chr2.3:58021911-58021930 | MS.gene55904:intron | 30.0% | |
| ATAGATGTAGTTTCCTGTAT+TGG | + | chr2.3:58021188-58021207 | MS.gene55904:intron | 30.0% | |
| ATCATTAAACAGAACCAAAG+TGG | - | chr2.3:58021928-58021947 | None:intergenic | 30.0% | |
| CAAACAACTGAAAATTGGAA+AGG | - | chr2.3:58020853-58020872 | None:intergenic | 30.0% | |
| CTAATCACATATCTTCTATG+TGG | + | chr2.3:58022134-58022153 | MS.gene55904:intron | 30.0% | |
| GAAATTGTAACCTTTGAATC+GGG | - | chr2.3:58019043-58019062 | None:intergenic | 30.0% | |
| GAGTTTGATAGGGTAATTAT+TGG | + | chr2.3:58020942-58020961 | MS.gene55904:intron | 30.0% | |
| GATATGACATATCAGATTGA+TGG | - | chr2.3:58019354-58019373 | None:intergenic | 30.0% | |
| TACCTGAATGATTTAGAAGA+TGG | - | chr2.3:58021079-58021098 | None:intergenic | 30.0% | |
| TACTAGGAAATATTAGAAGC+AGG | - | chr2.3:58021747-58021766 | None:intergenic | 30.0% | |
| TATTATTCATAAGCCTGTCA+AGG | - | chr2.3:58020175-58020194 | None:intergenic | 30.0% | |
| TCACAAGATAAAAAAAGAGG+GGG | - | chr2.3:58021129-58021148 | None:intergenic | 30.0% | |
| TCACTATTGGAATTGTACAA+TGG | - | chr2.3:58021793-58021812 | None:intergenic | 30.0% | |
| TGCTAAAGTAGAGTTTGATA+GGG | + | chr2.3:58020932-58020951 | MS.gene55904:intron | 30.0% | |
| TTCTGTAGATACTTACTACT+AGG | - | chr2.3:58021763-58021782 | None:intergenic | 30.0% | |
| TTGCTAAAGTAGAGTTTGAT+AGG | + | chr2.3:58020931-58020950 | MS.gene55904:intron | 30.0% | |
| ! | AAAATATCTCTGTGATTTGG+TGG | + | chr2.3:58019395-58019414 | MS.gene55904:intron | 30.0% |
| ! | AACTGCTATTGTTTTCCATT+TGG | - | chr2.3:58021316-58021335 | None:intergenic | 30.0% |
| ! | ACTGCTATTGTTTTCCATTT+GGG | - | chr2.3:58021315-58021334 | None:intergenic | 30.0% |
| ! | AGTGATCCATGAAACATTTT+AGG | - | chr2.3:58021509-58021528 | None:intergenic | 30.0% |
| ! | ATATAGACATAGGGTTTGTT+TGG | + | chr2.3:58020032-58020051 | MS.gene55904:intron | 30.0% |
| ! | GATTATCTTTTTGCATGAAC+AGG | + | chr2.3:58019209-58019228 | MS.gene55904:CDS | 30.0% |
| ! | TCAGATTGATGGTTTCTTAT+TGG | - | chr2.3:58019343-58019362 | None:intergenic | 30.0% |
| ! | TGGAATGTGATGTGTTTTAT+TGG | + | chr2.3:58020532-58020551 | MS.gene55904:intron | 30.0% |
| ! | TTTTCATAAACTACCTTGAC+AGG | + | chr2.3:58020159-58020178 | MS.gene55904:intron | 30.0% |
| !! | CATGCTTTTAATTCAAGTGT+CGG | + | chr2.3:58019881-58019900 | MS.gene55904:intron | 30.0% |
| !! | TTGATAATGATGATGAGAAG+AGG | + | chr2.3:58019508-58019527 | MS.gene55904:intron | 30.0% |
| !!! | AAACTGTTTTTTTACGGTGT+TGG | + | chr2.3:58019448-58019467 | MS.gene55904:intron | 30.0% |
| !!! | AGGGTAATTATTGGTTTTGT+TGG | + | chr2.3:58020951-58020970 | MS.gene55904:intron | 30.0% |
| !!! | GTTTTATTGGTGTTGGATTA+GGG | + | chr2.3:58020545-58020564 | MS.gene55904:intron | 30.0% |
| !!! | TGTTTTATTGGTGTTGGATT+AGG | + | chr2.3:58020544-58020563 | MS.gene55904:intron | 30.0% |
| ACACACAAATGAATCATGTC+TGG | - | chr2.3:58021579-58021598 | None:intergenic | 35.0% | |
| ATAGAGAGCGAGCAATTTAA+CGG | - | chr2.3:58019011-58019030 | None:intergenic | 35.0% | |
| ATTTGGAAGTGATTGGATGT+TGG | + | chr2.3:58019539-58019558 | MS.gene55904:intron | 35.0% | |
| CACACAAATGAATCATGTCT+GGG | - | chr2.3:58021578-58021597 | None:intergenic | 35.0% | |
| CATATACAAATATGACCCAC+AGG | - | chr2.3:58021281-58021300 | None:intergenic | 35.0% | |
| CTCATTTAGATGAGTGTTTG+TGG | + | chr2.3:58020798-58020817 | MS.gene55904:intron | 35.0% | |
| CTGTGGGTCATATTTGTATA+TGG | + | chr2.3:58021279-58021298 | MS.gene55904:intron | 35.0% | |
| GATATCTCTCAGACAAATCT+TGG | - | chr2.3:58020604-58020623 | None:intergenic | 35.0% | |
| GTGGAATACTAGATGATCAT+TGG | + | chr2.3:58019414-58019433 | MS.gene55904:intron | 35.0% | |
| GTTCACACACAAATAACATG+TGG | - | chr2.3:58022240-58022259 | None:intergenic | 35.0% | |
| GTTTCATGGATCACTTATGT+TGG | + | chr2.3:58021514-58021533 | MS.gene55904:intron | 35.0% | |
| TAAATCATTCAGGTAAGCTC+TGG | + | chr2.3:58021084-58021103 | MS.gene55904:intron | 35.0% | |
| TGTTGGACACTAATATGTGT+CGG | + | chr2.3:58019849-58019868 | MS.gene55904:intron | 35.0% | |
| TTATTCCTTGACATGTACCT+AGG | + | chr2.3:58020401-58020420 | MS.gene55904:intron | 35.0% | |
| TTGAAGTATACTAATGCTGG+TGG | + | chr2.3:58019246-58019265 | MS.gene55904:CDS | 35.0% | |
| TTGGAAACCAAATTGCATTG+CGG | + | chr2.3:58021533-58021552 | MS.gene55904:intron | 35.0% | |
| ! | CTGCTATTGTTTTCCATTTG+GGG | - | chr2.3:58021314-58021333 | None:intergenic | 35.0% |
| ! | GTGTCTTATTGGTTGAATCT+TGG | + | chr2.3:58022169-58022188 | MS.gene55904:intron | 35.0% |
| ! | TAGATGATCATGGTTCTGTT+TGG | - | chr2.3:58020255-58020274 | None:intergenic | 35.0% |
| !! | GTGATGTGTTTTATTGGTGT+TGG | + | chr2.3:58020538-58020557 | MS.gene55904:intron | 35.0% |
| !! | TCTACTAGTTTGCTCTTGAA+TGG | + | chr2.3:58020626-58020645 | MS.gene55904:CDS | 35.0% |
| !!! | ATGTTTTGGTTGGTTGAGTT+TGG | + | chr2.3:58020512-58020531 | MS.gene55904:intron | 35.0% |
| !!! | TAGTTTTGTGACCTACTTGA+AGG | - | chr2.3:58021481-58021500 | None:intergenic | 35.0% |
| AAATATGAACCAGACTGTGC+TGG | + | chr2.3:58021961-58021980 | MS.gene55904:intron | 40.0% | |
| ACAAGATTTGCCAGTGTTTC+TGG | - | chr2.3:58021031-58021050 | None:intergenic | 40.0% | |
| ACCAATAAGACACGGAAGAA+AGG | - | chr2.3:58022162-58022181 | None:intergenic | 40.0% | |
| AGAATAACGGTGCATAACTC+AGG | + | chr2.3:58021720-58021739 | MS.gene55904:intron | 40.0% | |
| ATGGAATTTGTCTCCCCAAA+TGG | + | chr2.3:58021298-58021317 | MS.gene55904:intron | 40.0% | |
| ATTATGCTGAGAGACAGCTT+AGG | + | chr2.3:58019621-58019640 | MS.gene55904:CDS | 40.0% | |
| CGATCGCGAGTATTAAAGAA+TGG | + | chr2.3:58019136-58019155 | MS.gene55904:CDS | 40.0% | |
| GATTGAATGGATCAGCATGT+TGG | + | chr2.3:58019832-58019851 | MS.gene55904:intron | 40.0% | |
| GCATAAACTAAGCATAGTCC+TGG | - | chr2.3:58022357-58022376 | None:intergenic | 40.0% | |
| GCATGAACAGGATTTCAATG+AGG | + | chr2.3:58019221-58019240 | MS.gene55904:CDS | 40.0% | |
| GCGTTGAAGTATACTAATGC+TGG | + | chr2.3:58019243-58019262 | MS.gene55904:CDS | 40.0% | |
| GGTCTAGCTAACGTATGTTA+AGG | - | chr2.3:58020334-58020353 | None:intergenic | 40.0% | |
| GTTGGACACTAATATGTGTC+GGG | + | chr2.3:58019850-58019869 | MS.gene55904:intron | 40.0% | |
| GTTGTATGCTGTCTTCATCT+TGG | + | chr2.3:58021049-58021068 | MS.gene55904:CDS | 40.0% | |
| TCTTGACCAGTACATGATCT+GGG | - | chr2.3:58022456-58022475 | None:intergenic | 40.0% | |
| TGTGAGGATTTGGAAGTGAT+TGG | + | chr2.3:58019532-58019551 | MS.gene55904:intron | 40.0% | |
| TTACTCAGCTTGCAAATGCT+TGG | + | chr2.3:58019675-58019694 | MS.gene55904:CDS | 40.0% | |
| TTTCTCATCACCCGATTCAA+AGG | + | chr2.3:58019030-58019049 | MS.gene55904:CDS | 40.0% | |
| ! | AAACTCGTTGTGATTTGTGC+AGG | + | chr2.3:58020994-58021013 | MS.gene55904:intron | 40.0% |
| ! | AGATCATGTACTGGTCAAGA+GGG | + | chr2.3:58022456-58022475 | MS.gene55904:CDS | 40.0% |
| ! | ATGTAGTTTCCTGTATTGGC+CGG | + | chr2.3:58021192-58021211 | MS.gene55904:intron | 40.0% |
| ! | GACATAGGGTTTGTTTGGAT+TGG | + | chr2.3:58020037-58020056 | MS.gene55904:intron | 40.0% |
| ! | GATCATGGTTCTGTTTGGAT+TGG | - | chr2.3:58020250-58020269 | None:intergenic | 40.0% |
| ! | TGATGAAGCTGAGACTCTTT+TGG | + | chr2.3:58020682-58020701 | MS.gene55904:CDS | 40.0% |
| ! | TGCAAATGCTTGGCTTGATT+TGG | + | chr2.3:58019685-58019704 | MS.gene55904:CDS | 40.0% |
| !! | AGGAGCAGAATCGTTGATTT+CGG | - | chr2.3:58018975-58018994 | None:intergenic | 40.0% |
| !! | TAGTTTGCTCTTGAATGGCA+AGG | + | chr2.3:58020631-58020650 | MS.gene55904:CDS | 40.0% |
| !! | TATTGGTGTTGGATTAGGGA+GGG | + | chr2.3:58020549-58020568 | MS.gene55904:intron | 40.0% |
| !! | TTATTGGTGTTGGATTAGGG+AGG | + | chr2.3:58020548-58020567 | MS.gene55904:intron | 40.0% |
| !!! | CTGTTTTTTTACGGTGTTGG+TGG | + | chr2.3:58019451-58019470 | MS.gene55904:intron | 40.0% |
| AAGTGCCTAGGTACATGTCA+AGG | - | chr2.3:58020409-58020428 | None:intergenic | 45.0% | |
| CACTAATATGTGTCGGGACT+CGG | + | chr2.3:58019856-58019875 | MS.gene55904:intron | 45.0% | |
| CTCAGAACCGCAATGCAATT+TGG | - | chr2.3:58021543-58021562 | None:intergenic | 45.0% | |
| CTCTTGACCAGTACATGATC+TGG | - | chr2.3:58022457-58022476 | None:intergenic | 45.0% | |
| GAGAAGAGGATGTGAGGATT+TGG | + | chr2.3:58019522-58019541 | MS.gene55904:intron | 45.0% | |
| GATGATGAGAAGAGGATGTG+AGG | + | chr2.3:58019516-58019535 | MS.gene55904:intron | 45.0% | |
| GCAAATGCTAACAAGTGCCT+AGG | - | chr2.3:58020421-58020440 | None:intergenic | 45.0% | |
| GCCTTTCTTCCGTGTCTTAT+TGG | + | chr2.3:58022158-58022177 | MS.gene55904:intron | 45.0% | |
| GTAGCATTGTTCCCAATTGC+AGG | - | chr2.3:58019171-58019190 | None:intergenic | 45.0% | |
| TACTAATGCTGGTGGAACCA+TGG | + | chr2.3:58019254-58019273 | MS.gene55904:CDS | 45.0% | |
| TAGAGTTGGGTCCTTCAAGT+AGG | + | chr2.3:58021467-58021486 | MS.gene55904:intron | 45.0% | |
| TATCGTTGCTACATCGCTCT+TGG | + | chr2.3:58018929-58018948 | MS.gene55904:CDS | 45.0% | |
| TTAACGGCTTGAAGAGACGT+AGG | - | chr2.3:58018995-58019014 | None:intergenic | 45.0% | |
| TTCACACCCAGATCATGTAC+TGG | + | chr2.3:58022447-58022466 | MS.gene55904:CDS | 45.0% | |
| TTGGGAACAATGCTACGTTG+AGG | + | chr2.3:58019175-58019194 | MS.gene55904:CDS | 45.0% | |
| ! | AAGGACCCAACTCTAGAAGA+GGG | - | chr2.3:58021462-58021481 | None:intergenic | 45.0% |
| ! | CAGATCATGTACTGGTCAAG+AGG | + | chr2.3:58022455-58022474 | MS.gene55904:CDS | 45.0% |
| ! | GCTGTTTGCTGCATGCAAAT+GGG | + | chr2.3:58020653-58020672 | MS.gene55904:CDS | 45.0% |
| ! | GTGATTTGTGCAGGATGCTA+GGG | + | chr2.3:58021003-58021022 | MS.gene55904:intron | 45.0% |
| ! | TGAAGCTGAGACTCTTTTGG+TGG | + | chr2.3:58020685-58020704 | MS.gene55904:CDS | 45.0% |
| ! | TGTGATTTGTGCAGGATGCT+AGG | + | chr2.3:58021002-58021021 | MS.gene55904:intron | 45.0% |
| !! | ATTGGTGTTGGATTAGGGAG+GGG | + | chr2.3:58020550-58020569 | MS.gene55904:intron | 45.0% |
| !! | TTTGGTGGAAGCACTCAACA+AGG | + | chr2.3:58020700-58020719 | MS.gene55904:CDS | 45.0% |
| !!! | TTTTATATAAAAAGAAAAAA+AGG | + | chr2.3:58020478-58020497 | MS.gene55904:intron | 5.0% |
| AAGATTCCACCGGCCAATAC+AGG | - | chr2.3:58021204-58021223 | None:intergenic | 50.0% | |
| AGTTGTTGCGGAGGTTGAAG+AGG | - | chr2.3:58018820-58018839 | None:intergenic | 50.0% | |
| CACCGAGGTAGAAGTTGTTG+CGG | - | chr2.3:58018832-58018851 | None:intergenic | 50.0% | |
| CTCCGCAACAACTTCTACCT+CGG | + | chr2.3:58018827-58018846 | MS.gene55904:CDS | 50.0% | |
| CTGGGTGTGAAAGTTTCAGC+TGG | - | chr2.3:58022438-58022457 | None:intergenic | 50.0% | |
| GGAAGATCAAATGCGCCTCT+TGG | - | chr2.3:58020583-58020602 | None:intergenic | 50.0% | |
| GGCTTGCAGATCCTGCAATT+GGG | + | chr2.3:58019157-58019176 | MS.gene55904:CDS | 50.0% | |
| GTCGCGTTCGATTATGTCGT+CGG | - | chr2.3:58018900-58018919 | None:intergenic | 50.0% | |
| TCGCGTTCGATTATGTCGTC+GGG | - | chr2.3:58018899-58018918 | None:intergenic | 50.0% | |
| TGAACCAGACTGTGCTGGAA+AGG | + | chr2.3:58021966-58021985 | MS.gene55904:intron | 50.0% | |
| TGCTAGGGATCCAGAAACAC+TGG | + | chr2.3:58021018-58021037 | MS.gene55904:CDS | 50.0% | |
| TGTTCCTTTCCAGCACAGTC+TGG | - | chr2.3:58021973-58021992 | None:intergenic | 50.0% | |
| ! | GAAGGACCCAACTCTAGAAG+AGG | - | chr2.3:58021463-58021482 | None:intergenic | 50.0% |
| ! | GGCTGTTTGCTGCATGCAAA+TGG | + | chr2.3:58020652-58020671 | MS.gene55904:CDS | 50.0% |
| ! | TAGTTTCCTGTATTGGCCGG+TGG | + | chr2.3:58021195-58021214 | MS.gene55904:intron | 50.0% |
| ! | TGGCTTGCAGATCCTGCAAT+TGG | + | chr2.3:58019156-58019175 | MS.gene55904:CDS | 50.0% |
| !! | CCACACCCTCTTCTAGAGTT+GGG | + | chr2.3:58021454-58021473 | MS.gene55904:intron | 50.0% |
| !! | CTACGTTGAGGCTTGTTGCT+GGG | + | chr2.3:58019187-58019206 | MS.gene55904:CDS | 50.0% |
| !! | TCCACACCCTCTTCTAGAGT+TGG | + | chr2.3:58021453-58021472 | MS.gene55904:intron | 50.0% |
| !! | TGCTTGGCTTGATTTGGCTG+TGG | + | chr2.3:58019691-58019710 | MS.gene55904:CDS | 50.0% |
| CGAGGTAGAAGTTGTTGCGG+AGG | - | chr2.3:58018829-58018848 | None:intergenic | 55.0% | |
| CGATTATGTCGTCGGGAGAG+AGG | - | chr2.3:58018892-58018911 | None:intergenic | 55.0% | |
| CGGAGGTTGAAGAGGTGATC+TGG | - | chr2.3:58018812-58018831 | None:intergenic | 55.0% | |
| TATGTCGTCGGGAGAGAGGT+TGG | - | chr2.3:58018888-58018907 | None:intergenic | 55.0% | |
| TTGCAGCTTGGTATGCACCG+AGG | - | chr2.3:58018847-58018866 | None:intergenic | 55.0% | |
| ! | CCCAACTCTAGAAGAGGGTG+TGG | - | chr2.3:58021457-58021476 | None:intergenic | 55.0% |
| ! | CGCTGCTGTTGATTGCAGCT+TGG | - | chr2.3:58018859-58018878 | None:intergenic | 55.0% |
| !! | GCTACGTTGAGGCTTGTTGC+TGG | + | chr2.3:58019186-58019205 | MS.gene55904:CDS | 55.0% |
| GGGAGGGGCGAAGATCCAAG+AGG | + | chr2.3:58020565-58020584 | MS.gene55904:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 58018800 | 58022528 | 58018800 | ID=MS.gene55904 |
| chr2.3 | mRNA | 58018800 | 58022528 | 58018800 | ID=MS.gene55904.t1;Parent=MS.gene55904 |
| chr2.3 | exon | 58018800 | 58019051 | 58018800 | ID=MS.gene55904.t1.exon1;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58018800 | 58019051 | 58018800 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| chr2.3 | exon | 58019129 | 58019280 | 58019129 | ID=MS.gene55904.t1.exon2;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58019129 | 58019280 | 58019129 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| chr2.3 | exon | 58019577 | 58019712 | 58019577 | ID=MS.gene55904.t1.exon3;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58019577 | 58019712 | 58019577 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| chr2.3 | exon | 58020566 | 58020721 | 58020566 | ID=MS.gene55904.t1.exon4;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58020566 | 58020721 | 58020566 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| chr2.3 | exon | 58021016 | 58021095 | 58021016 | ID=MS.gene55904.t1.exon5;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58021016 | 58021095 | 58021016 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| chr2.3 | exon | 58022435 | 58022528 | 58022435 | ID=MS.gene55904.t1.exon6;Parent=MS.gene55904.t1 |
| chr2.3 | CDS | 58022435 | 58022528 | 58022435 | ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1 |
| Gene Sequence |
| Protein sequence |
