AlfalfaGEDB | MS.gene55904

M. sativa cultivar XinJiangDaYe / MS.gene55904

KEGG: K17268
GO: GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
PFAM: PF04733.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55904.t1	XP_013463088.1	98.6	289	4	0	1	289	1	289	3.20E-157	564.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55904.t1	Q9SA78	75.3	287	71	0	1	287	4	290	2.5e-126	453.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55904.t1	Q5QQ34	98.6	289	4	0	1	289	1	289	2.3e-157	564.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene55904	0.804576	2.02E-49	-1.69E-46
MS.gene049807	MS.gene55904	0.870982	9.66E-67	-1.69E-46
MS.gene049887	MS.gene55904	0.815597	8.52E-52	-1.69E-46
MS.gene050359	MS.gene55904	0.810352	1.20E-50	-1.69E-46
MS.gene050551	MS.gene55904	0.806944	6.43E-50	-1.69E-46
MS.gene050646	MS.gene55904	0.812802	3.53E-51	-1.69E-46
MS.gene050752	MS.gene55904	0.82337	1.44E-53	-1.69E-46
MS.gene050838	MS.gene55904	0.876849	1.01E-68	-1.69E-46
MS.gene050945	MS.gene55904	0.834808	2.42E-56	-1.69E-46
MS.gene051003	MS.gene55904	0.84219	3.01E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene00066	MS.gene55904	PPI
MS.gene003673	MS.gene55904	PPI
MS.gene032230	MS.gene55904	PPI
MS.gene21432	MS.gene55904	PPI
MS.gene55904	MS.gene005784	PPI
MS.gene55904	MS.gene003672	PPI
MS.gene55904	MS.gene68093	PPI
MS.gene55904	MS.gene062888	PPI
MS.gene55904	MS.gene23325	PPI
MS.gene55904	MS.gene50735	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55904.t1	MTR_2g032130	98.616	289	4	0	1	289	1	289	0.0	591

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55904.t1	AT1G30630	74.740	289	73	1	289	4	292	2.05e-169	471
MS.gene55904.t1	AT2G34840	75.347	288	71	2	289	6	293	2.13e-169	471
MS.gene55904.t1	AT2G34840	75.701	214	52	76	289	1	214	1.26e-125	357

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Find 56 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTTATTAAGATGCAT+AGG	0.590426	2.3:+58019594	MS.gene55904:CDS
AACCATCTTCTAAATCATTC+AGG	0.343553	2.3:+58021074	MS.gene55904:CDS
ACAAGATTTGCCAGTGTTTC+TGG	0.104502	2.3:-58021028	None:intergenic
AGATCATGTACTGGTCAAGA+GGG	0.649201	2.3:+58022456	MS.gene55904:CDS
AGGAGCAGAATCGTTGATTT+CGG	0.403329	2.3:-58018972	None:intergenic
AGTTGTTGCGGAGGTTGAAG+AGG	0.528845	2.3:-58018817	None:intergenic
ATAGAGAGCGAGCAATTTAA+CGG	0.433280	2.3:-58019008	None:intergenic
ATTATGCTGAGAGACAGCTT+AGG	0.588117	2.3:+58019621	MS.gene55904:CDS
CACCGAGGTAGAAGTTGTTG+CGG	0.603080	2.3:-58018829	None:intergenic
CAGATCATGTACTGGTCAAG+AGG	0.589094	2.3:+58022455	MS.gene55904:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATCTTCTAAATCATTC+AGG	+	chr2.3:58021074-58021093	MS.gene55904:CDS	30.0%
AAGATTCAACCAATAAGACA+CGG	-	chr2.3:58022170-58022189	None:intergenic	30.0%
AAGTAACAAAAAGATTCCAC+CGG	-	chr2.3:58021214-58021233	None:intergenic	30.0%
ACTAGCATTATATACAAACC+AGG	+	chr2.3:58022336-58022355	MS.gene55904:intron	30.0%
ACTAGGAAATATTAGAAGCA+GGG	-	chr2.3:58021746-58021765	None:intergenic	30.0%
ACTCATCTAAATGAGATAAC+AGG	-	chr2.3:58020793-58020812	None:intergenic	30.0%
AGATATATGTTTAGCCACTT+TGG	+	chr2.3:58021911-58021930	MS.gene55904:intron	30.0%
ATAGATGTAGTTTCCTGTAT+TGG	+	chr2.3:58021188-58021207	MS.gene55904:intron	30.0%
ATCATTAAACAGAACCAAAG+TGG	-	chr2.3:58021928-58021947	None:intergenic	30.0%
CAAACAACTGAAAATTGGAA+AGG	-	chr2.3:58020853-58020872	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	58018800	58022528	58018800	ID=MS.gene55904
chr2.3	mRNA	58018800	58022528	58018800	ID=MS.gene55904.t1;Parent=MS.gene55904
chr2.3	exon	58018800	58019051	58018800	ID=MS.gene55904.t1.exon1;Parent=MS.gene55904.t1
chr2.3	CDS	58018800	58019051	58018800	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1
chr2.3	exon	58019129	58019280	58019129	ID=MS.gene55904.t1.exon2;Parent=MS.gene55904.t1
chr2.3	CDS	58019129	58019280	58019129	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1
chr2.3	exon	58019577	58019712	58019577	ID=MS.gene55904.t1.exon3;Parent=MS.gene55904.t1
chr2.3	CDS	58019577	58019712	58019577	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1
chr2.3	exon	58020566	58020721	58020566	ID=MS.gene55904.t1.exon4;Parent=MS.gene55904.t1
chr2.3	CDS	58020566	58020721	58020566	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1
chr2.3	exon	58021016	58021095	58021016	ID=MS.gene55904.t1.exon5;Parent=MS.gene55904.t1
chr2.3	CDS	58021016	58021095	58021016	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1
chr2.3	exon	58022435	58022528	58022435	ID=MS.gene55904.t1.exon6;Parent=MS.gene55904.t1
chr2.3	CDS	58022435	58022528	58022435	ID=cds.MS.gene55904.t1;Parent=MS.gene55904.t1

Gene Sequence

>MS.gene55904

ATGGCGACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGTTACAATTTCATCAATTTCTCAATTTCTCTTCAATTTGTTCAATTTCTCGTCAATTTATCGTTATTGTTATTGTAGGAATCTGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTCAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGTAAGAAAAAAAATGCATTTTTTATACACTGACTGTGTAAAATAACATTACGCTGTAATCCAATAAGAAACCATCAATCTGATATGTCATATCAATATCATACAACTAATTTTAAAAATATCTCTGTGATTTGGTGGAATACTAGATGATCATTGGATGTTAGTGTAAAACTGTTTTTTTACGGTGTTGGTGGATCTAATGTTTTCTCTTGATTTATTATTTCAATTTTGATAATGATGATGAGAAGAGGATGTGAGGATTTGGAAGTGATTGGATGTTGGTTTTGTGTTTTTTAGGACTGCTTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAGCTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGTAATTTTTAACATAAGTATTATTATTTGCCTTATTATTGAAAATGTTGATGAAAGGGCATGAATGTAAGACTTGATACTGACATATAGACACTGATAATAATTTTAAAAATTGGAAGTGATTGAATGGATCAGCATGTTGGACACTAATATGTGTCGGGACTCGGAACATGCTTTTAATTCAAGTGTCGGTGCTATGTAGATTATTATTAGGGCCCTGATAACAAGTTTTCTAATGACACGTGTTAAGAAATCAATTATGATCTTGAAAAGAACGTTTTTTTTAACTTTTAAATGTAGGGCACATGTTAAAAAATTCAATATAGACATAGGGTTTGTTTGGATTGGCTTATTTTTTAGCTAATGAAAAATAGATTATGCAAGTAAATAAGTTTTTATGGCAATTCATAGGTTTTAACTAATGAAAATTGTATTTTCATAATCTGTTTTTCATAAACTACCTTGACAGGCTTATGAATAATACATAAAAGGTTACTTATTTGCGTAAGCTGTTTTGCATAAGCTAAAAACTAAGCCAATCCAAACAGAACCATGATCATCTAAAAAGTTTAAAAAGTTTAAAAATTGTTTTTTCAATGCAAAATTTCTATTTTTGGTTCCTTAACATACGTTAGCTAGACCCTTTAATAAATTCAATACATCAGTTTGAAGACAATATTTCTATTTTTTTATTCCTTGACATGTACCTAGGCACTTGTTAGCATTTGCCTTATTATTATTACTTGATGAAACAAAAAGTGTCTTTTTTTATATAAAAAGAAAAAAAGGTTTGAAAATAGATGTTTTGGTTGGTTGAGTTTGGAATGTGATGTGTTTTATTGGTGTTGGATTAGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGCACGTTTGTTTTGCATTGCATTGCTTATTCGTTTCAGTTTCATTTGACTAAACTTTTGATATTACATCCTGTTATCTCATTTAGATGAGTGTTTGTGGTTGTCCAAAACTTTTAATGTTTGATAATGCCTTTCCAATTTTCAGTTGTTTGATATTCTTTCAAATGAAGATTGAAATTCTGTTGGCTCTTTAATTTAAATCTTTAGGCTTTGCTAAAGTAGAGTTTGATAGGGTAATTATTGGTTTTGTTGGAAATGGTTTTTGTGCTTAAGAAACTCGTTGTGATTTGTGCAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGGTAAGCTCTGGACATCTTTATTGTTTGCAACCCCCTCTTTTTTTATCTTGTGATTTTTTTTGTTGTTTTTTATTGAAAATATATATCTTAGCATAGATGTAGTTTCCTGTATTGGCCGGTGGAATCTTTTTGTTACTTGTAATAATTTTACTAAATTCTGAATCAACTCTATAATTTTAATACCTGTGGGTCATATTTGTATATGGAATTTGTCTCCCCAAATGGAAAACAATAGCAGTTGTTAATGAAATTAATTAAACAATAGCTCTTTCAATTAAAAACTTTGGAATATAGAGCTAGATTTTATATGAATGCATATCATTAAAATCTTTTGGGTTTAGAATGGTATGATCTGTTTCCACACCCTCTTCTAGAGTTGGGTCCTTCAAGTAGGTCACAAAACTATTAAACCTAAAATGTTTCATGGATCACTTATGTTGGAAACCAAATTGCATTGCGGTTCTGAGTTTGTCTTGTTTCCCAGACATGATTCATTTGTGTGTCAAATCTCACTTAAACTGTTTCATTACTGAACTATTTACATTCTAAATATGTCATTCAATAATCAGTAGTAAATAGTGTTACTAATCACTAATAGTGATTAATAACATAACATCATTTGTAAGAATAACGGTGCATAACTCAGGCCCTGCTTCTAATATTTCCTAGTAGTAAGTATCTACAGAATCAAATACCATTGTACAATTCCAATAGTGAAACTGTAAAATGACAAGTCCAAAACTCTATTATCATATATATCTAATATAGAAAATAGTCTAATATAGAAAATAGAAAATGTGTTATACATTTTATTAAGATATATGTTTAGCCACTTTGGTTCTGTTTAATGATTTATTTGCTCTTCAAATATGAACCAGACTGTGCTGGAAAGGAACAATTTTGAATACCCTTAGCAATCAAAAATACTTGATGCTTAGAGAAACTGACATACTTATATTTTGTTGTCCTCTTTAATTTACGCTGTAAATAGTTTGCATCAGTAAAATCTATGAAATGAATGCATCTTGAGTTTGATAGCTAATCACATATCTTCTATGTGGAGCCTTTCTTCCGTGTCTTATTGGTTGAATCTTGGATATCTGATTATGTATTTCTTGGTTCAATATTATGCAATGTTACACCACATGTTATTTGTGTGTGAACATTTTGCAGTTTACTCTCATTGTAAGTGTCAAACATATGTAGTAATGAATCTTTTTTAAATATTGTTTGTGTTTCTACTAGCATTATATACAAACCAGGACTATGCTTAGTTTATGCGATTGAGAAAGATGATTTTCCATTAGTGAGTAACTTGTAAATGTGCACTGTTTTGCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA

Protein sequence

>MS.gene55904.t1

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS