Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001412.t1 | XP_013464042.1 | 96.8 | 310 | 10 | 0 | 3 | 312 | 267 | 576 | 2.60E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001412.t1 | Q56X72 | 56.9 | 267 | 112 | 2 | 5 | 270 | 173 | 437 | 6.6e-80 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001412.t1 | A0A072V8B4 | 96.8 | 310 | 10 | 0 | 3 | 312 | 267 | 576 | 1.9e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35163 | MS.gene001412 | PPI |
| MS.gene36496 | MS.gene001412 | PPI |
| MS.gene028296 | MS.gene001412 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001412.t1 | MTR_2g460800 | 96.774 | 310 | 10 | 0 | 3 | 312 | 267 | 576 | 0.0 | 638 |
| MS.gene001412.t1 | MTR_2g460800 | 95.872 | 218 | 9 | 0 | 3 | 220 | 267 | 484 | 4.20e-153 | 438 |
| MS.gene001412.t1 | MTR_4g078740 | 35.816 | 282 | 171 | 6 | 4 | 282 | 1 | 275 | 1.06e-47 | 162 |
| MS.gene001412.t1 | MTR_2g090620 | 36.864 | 236 | 144 | 3 | 62 | 295 | 137 | 369 | 1.63e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001412.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 5 | 275 | 173 | 441 | 1.48e-107 | 322 |
| MS.gene001412.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 5 | 275 | 279 | 547 | 9.17e-107 | 323 |
| MS.gene001412.t1 | AT2G20590 | 36.782 | 261 | 156 | 3 | 20 | 275 | 122 | 378 | 1.03e-46 | 163 |
| MS.gene001412.t1 | AT2G20590 | 37.500 | 240 | 139 | 3 | 46 | 275 | 127 | 365 | 2.21e-46 | 162 |
| MS.gene001412.t1 | AT4G28430 | 39.070 | 215 | 129 | 2 | 62 | 275 | 193 | 406 | 2.90e-40 | 146 |
| MS.gene001412.t1 | AT2G20590 | 36.816 | 201 | 118 | 3 | 20 | 215 | 122 | 318 | 3.77e-31 | 119 |
Find 58 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGTTTGGAGAAATTT+TGG | 0.157130 | 2.4:+37421724 | None:intergenic |
| CTAGACTCTGCAACTTGTTT+TGG | 0.174874 | 2.4:+37421556 | None:intergenic |
| TGAAAATTTCTTACTTGAAT+TGG | 0.195478 | 2.4:+37421707 | None:intergenic |
| TTGTGATGAAATCTCATATT+TGG | 0.200932 | 2.4:+37421822 | None:intergenic |
| TCATTATTACCTGCAAATTA+AGG | 0.229353 | 2.4:+37420799 | None:intergenic |
| AGTACTATTTCAGGCTTCTT+TGG | 0.243221 | 2.4:-37420079 | MS.gene001412:intron |
| CTACTGCGTTCTTCTTCTTT+TGG | 0.250422 | 2.4:+37421591 | None:intergenic |
| GTGGAAGTTTCATAACTATT+TGG | 0.254654 | 2.4:-37420222 | MS.gene001412:CDS |
| TTGTGTTGTTTCTGTCTAAC+TGG | 0.259168 | 2.4:+37418018 | None:intergenic |
| TCTATAGATCCTTAATTTGC+AGG | 0.277885 | 2.4:-37420808 | MS.gene001412:intron |
| GACAAGAATTCATTCAAATA+AGG | 0.278389 | 2.4:+37420410 | None:intergenic |
| CAAGATCAGCATTTGTGTTT+GGG | 0.280922 | 2.4:-37421418 | MS.gene001412:CDS |
| CATCTGTTGTTGCTCGCATT+TGG | 0.323883 | 2.4:-37418248 | MS.gene001412:CDS |
| TGCAATTTGGATGCTGAAAT+TGG | 0.325517 | 2.4:-37420438 | MS.gene001412:CDS |
| TCAAGATCAGCATTTGTGTT+TGG | 0.329810 | 2.4:-37421419 | MS.gene001412:CDS |
| GAAAATTTCTTACTTGAATT+GGG | 0.330039 | 2.4:+37421708 | None:intergenic |
| TTTCTTACTTGAATTGGGTT+TGG | 0.336832 | 2.4:+37421713 | None:intergenic |
| GAATCCTTTCTTGACTTTGT+TGG | 0.339840 | 2.4:+37417984 | None:intergenic |
| TAAGAGAACAAGATGCAATT+TGG | 0.344866 | 2.4:-37420451 | MS.gene001412:CDS |
| ATACTATCAACAACACTATA+TGG | 0.360600 | 2.4:-37418097 | MS.gene001412:CDS |
| TAGGCATATTCGGTCTAGTA+TGG | 0.366112 | 2.4:-37418278 | MS.gene001412:CDS |
| ACTACAAGAGGAACAGAAAC+TGG | 0.385936 | 2.4:+37421786 | None:intergenic |
| ATCTGTTGTTGCTCGCATTT+GGG | 0.390664 | 2.4:-37418247 | MS.gene001412:CDS |
| TCAGCATTTGTGTTTGGGAT+TGG | 0.406573 | 2.4:-37421413 | MS.gene001412:CDS |
| TTTCATAACTATTTGGAAGA+TGG | 0.416263 | 2.4:-37420215 | MS.gene001412:CDS |
| TGCAGTGTTTGTACTATTTG+TGG | 0.423837 | 2.4:-37418127 | MS.gene001412:intron |
| GAATACGAAGAGCAGATCTT+TGG | 0.436812 | 2.4:+37420043 | None:intergenic |
| GCTGTGGCTCTAGGCATATT+CGG | 0.445263 | 2.4:-37418288 | MS.gene001412:CDS |
| ATTACCTTCATTGTGGTGCC+AGG | 0.452683 | 2.4:+37420359 | None:intergenic |
| TCAGCACAATTAACTGCATA+TGG | 0.452909 | 2.4:-37420022 | MS.gene001412:intron |
| ATTTCTGCAATGTCCTATGT+AGG | 0.468181 | 2.4:-37420857 | MS.gene001412:CDS |
| ATTTGGAAGATGGCTAAAAT+CGG | 0.474250 | 2.4:-37420205 | MS.gene001412:intron |
| TCGTCGATTCCGGGATGCAT+GGG | 0.478641 | 2.4:-37418331 | MS.gene001412:CDS |
| GTTGTTGCTCGCATTTGGGC+AGG | 0.478972 | 2.4:-37418243 | MS.gene001412:intron |
| GAATGGGTGGAAGATGAAAC+AGG | 0.491736 | 2.4:-37418066 | MS.gene001412:CDS |
| AAGTCAAGAAAGGATTCTAA+AGG | 0.492545 | 2.4:-37417978 | None:intergenic |
| ACTATATGGTGAGGGATGAA+TGG | 0.492619 | 2.4:-37418083 | MS.gene001412:CDS |
| TTCGTCGATTCCGGGATGCA+TGG | 0.499984 | 2.4:-37418332 | MS.gene001412:CDS |
| AACAATCCCCTACAATCAAA+AGG | 0.507778 | 2.4:-37421761 | MS.gene001412:CDS |
| ATGCAAAGGATATCAATTTG+AGG | 0.510644 | 2.4:-37421364 | MS.gene001412:intron |
| TGCAAATTAAGGATCTATAG+AGG | 0.521117 | 2.4:+37420810 | None:intergenic |
| CTATATGGTGAGGGATGAAT+GGG | 0.530924 | 2.4:-37418082 | MS.gene001412:CDS |
| AAGATAGACAAGGCCTACAT+AGG | 0.541659 | 2.4:+37420844 | None:intergenic |
| GGGGATTGTTTCACTACAAG+AGG | 0.543889 | 2.4:+37421774 | None:intergenic |
| GCTACCAACAAAGTCAAGAA+AGG | 0.545347 | 2.4:-37417988 | MS.gene001412:CDS |
| TACTTAAATTACCTTCATTG+TGG | 0.555434 | 2.4:+37420352 | None:intergenic |
| AGATCCTGGCACCACAATGA+AGG | 0.555506 | 2.4:-37420363 | MS.gene001412:intron |
| CAAAACAAGTTGCAGAGTCT+AGG | 0.557021 | 2.4:-37421555 | MS.gene001412:intron |
| AGTCTCATCTTCTTATGCAA+AGG | 0.559905 | 2.4:-37421378 | MS.gene001412:CDS |
| TGCATGAATCCCATGCATCC+CGG | 0.564871 | 2.4:+37418322 | None:intergenic |
| AGAATTCATTCAAATAAGGT+AGG | 0.591737 | 2.4:+37420414 | None:intergenic |
| CAACAGTGGATTTAATAATG+TGG | 0.598108 | 2.4:-37421451 | MS.gene001412:intron |
| AAACAGGATGTGATGAAGCA+TGG | 0.601103 | 2.4:-37418050 | MS.gene001412:CDS |
| TATGGTGAGGGATGAATGGG+TGG | 0.602229 | 2.4:-37418079 | MS.gene001412:CDS |
| ATCAACAACACTATATGGTG+AGG | 0.602777 | 2.4:-37418092 | MS.gene001412:CDS |
| AACAGGATGTGATGAAGCAT+GGG | 0.612508 | 2.4:-37418049 | MS.gene001412:CDS |
| TCAACAACACTATATGGTGA+GGG | 0.642871 | 2.4:-37418091 | MS.gene001412:CDS |
| AGATAACTGCAAGATAGACA+AGG | 0.714341 | 2.4:+37420834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATATATATATAGT+GGG | - | chr2.4:37419260-37419279 | MS.gene001412:intron | 10.0% |
| !!! | TATTTTGAAAATGATTATAT+AGG | - | chr2.4:37421290-37421309 | MS.gene001412:intron | 10.0% |
| !! | ATAATGCAAATATTCTAAAT+AGG | + | chr2.4:37418656-37418675 | None:intergenic | 15.0% |
| !! | CAAATTATATATATATAGTG+GGG | - | chr2.4:37419261-37419280 | MS.gene001412:intron | 15.0% |
| !! | GACAAATTATATATATATAG+TGG | - | chr2.4:37419259-37419278 | MS.gene001412:intron | 15.0% |
| !! | TAATTAATAAATACATCACA+TGG | - | chr2.4:37420877-37420896 | MS.gene001412:intron | 15.0% |
| !!! | ATACATATTTTTCATTTTCA+GGG | - | chr2.4:37420558-37420577 | MS.gene001412:intron | 15.0% |
| !!! | ATTTTTCGAGTTTATATTTA+AGG | - | chr2.4:37419237-37419256 | MS.gene001412:intron | 15.0% |
| !!! | CAGTTGTTAATTTTTTTTAT+GGG | - | chr2.4:37419292-37419311 | MS.gene001412:intron | 15.0% |
| !!! | TATACATATTTTTCATTTTC+AGG | - | chr2.4:37420557-37420576 | MS.gene001412:intron | 15.0% |
| !!! | TCAGTTGTTAATTTTTTTTA+TGG | - | chr2.4:37419291-37419310 | MS.gene001412:intron | 15.0% |
| !!! | TTATTATTATTGCTAGTTTT+AGG | - | chr2.4:37420467-37420486 | MS.gene001412:CDS | 15.0% |
| !! | AAACTTACTATATACGAATA+CGG | + | chr2.4:37419213-37419232 | None:intergenic | 20.0% |
| !! | AATATCACGTGTATAAAAAA+TGG | + | chr2.4:37420293-37420312 | None:intergenic | 20.0% |
| !! | GAAAATTTCTTACTTGAATT+GGG | + | chr2.4:37418101-37418120 | None:intergenic | 20.0% |
| !! | TCATAATAATCGTAACATAA+TGG | - | chr2.4:37421052-37421071 | MS.gene001412:intron | 20.0% |
| !! | TGAAAATTTCTTACTTGAAT+TGG | + | chr2.4:37418102-37418121 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | - | chr2.4:37418576-37418595 | MS.gene001412:intron | 20.0% |
| !!! | ATAAATTTTCATCATACTAG+TGG | + | chr2.4:37421182-37421201 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATTGACATAT+TGG | + | chr2.4:37421320-37421339 | None:intergenic | 20.0% |
| !!! | CAACATTAAATTTGTTTTTG+TGG | - | chr2.4:37419976-37419995 | MS.gene001412:intron | 20.0% |
| !!! | CAATATAACTTTTACTGTTT+CGG | - | chr2.4:37418890-37418909 | MS.gene001412:intron | 20.0% |
| !!! | CAGTCAATTTTGTAATTTTT+GGG | - | chr2.4:37418130-37418149 | MS.gene001412:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | - | chr2.4:37418577-37418596 | MS.gene001412:intron | 20.0% |
| !!! | GATATGATAAAGCAAATTTT+TGG | - | chr2.4:37421450-37421469 | MS.gene001412:intron | 20.0% |
| !!! | TAAAATCGGTAAGTTTTTAA+AGG | - | chr2.4:37419615-37419634 | MS.gene001412:intron | 20.0% |
| !!! | TACATATCTACTCTTTTATA+CGG | - | chr2.4:37419911-37419930 | MS.gene001412:intron | 20.0% |
| !!! | TCAGTCAATTTTGTAATTTT+TGG | - | chr2.4:37418129-37418148 | MS.gene001412:intron | 20.0% |
| !!! | TCTTTTATTTTGGTAAACTA+GGG | - | chr2.4:37421014-37421033 | MS.gene001412:intron | 20.0% |
| !!! | TGTGGATTTTTTTTTTTTTG+AGG | - | chr2.4:37419994-37420013 | MS.gene001412:intron | 20.0% |
| !!! | TGTGTTTTACTAATCTTTTA+AGG | - | chr2.4:37418185-37418204 | MS.gene001412:intron | 20.0% |
| ! | AACTTACTATATACGAATAC+GGG | + | chr2.4:37419212-37419231 | None:intergenic | 25.0% |
| ! | ACATTAATTACATTATCAGC+GGG | + | chr2.4:37419158-37419177 | None:intergenic | 25.0% |
| ! | ACTGCATTGTTAAATTAGTT+GGG | - | chr2.4:37419063-37419082 | MS.gene001412:intron | 25.0% |
| ! | AGAATTCATTCAAATAAGGT+AGG | + | chr2.4:37419395-37419414 | None:intergenic | 25.0% |
| ! | ATACTATCAACAACACTATA+TGG | - | chr2.4:37421709-37421728 | MS.gene001412:intron | 25.0% |
| ! | ATAGTGTAGAATAGATTAGA+CGG | - | chr2.4:37419838-37419857 | MS.gene001412:intron | 25.0% |
| ! | CACATTAATTACATTATCAG+CGG | + | chr2.4:37419159-37419178 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | + | chr2.4:37418580-37418599 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | + | chr2.4:37418642-37418661 | None:intergenic | 25.0% |
| ! | GACAAGAATTCATTCAAATA+AGG | + | chr2.4:37419399-37419418 | None:intergenic | 25.0% |
| ! | TACTGCATTGTTAAATTAGT+TGG | - | chr2.4:37419062-37419081 | MS.gene001412:intron | 25.0% |
| ! | TACTTAAATTACCTTCATTG+TGG | + | chr2.4:37419457-37419476 | None:intergenic | 25.0% |
| ! | TAGTAATAATGTAGATCTGA+CGG | - | chr2.4:37420354-37420373 | MS.gene001412:intron | 25.0% |
| ! | TCAACATAAATTGTTGGATT+TGG | - | chr2.4:37418519-37418538 | MS.gene001412:intron | 25.0% |
| ! | TCATTATTACCTGCAAATTA+AGG | + | chr2.4:37419010-37419029 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | + | chr2.4:37418643-37418662 | None:intergenic | 25.0% |
| ! | TCTACATTATTACTATGCAT+TGG | + | chr2.4:37420349-37420368 | None:intergenic | 25.0% |
| ! | TTGTGATGAAATCTCATATT+TGG | + | chr2.4:37417987-37418006 | None:intergenic | 25.0% |
| ! | TTTCATAACTATTTGGAAGA+TGG | - | chr2.4:37419591-37419610 | MS.gene001412:intron | 25.0% |
| !!! | ATTATTGCTAGTTTTAGGTT+TGG | - | chr2.4:37420472-37420491 | MS.gene001412:CDS | 25.0% |
| !!! | GTCTTTTATTTTGGTAAACT+AGG | - | chr2.4:37421013-37421032 | MS.gene001412:intron | 25.0% |
| !!! | GTGACAATTGTCTTTTATTT+TGG | - | chr2.4:37421004-37421023 | MS.gene001412:intron | 25.0% |
| !!! | TAATTTTTTTTATGGGCTCA+GGG | - | chr2.4:37419299-37419318 | MS.gene001412:intron | 25.0% |
| !!! | TTAATTTTTTTTATGGGCTC+AGG | - | chr2.4:37419298-37419317 | MS.gene001412:intron | 25.0% |
| !!! | TTGAATTCCTTTTGATTGTA+GGG | + | chr2.4:37418055-37418074 | None:intergenic | 25.0% |
| !!! | TTTGAATTCCTTTTGATTGT+AGG | + | chr2.4:37418056-37418075 | None:intergenic | 25.0% |
| !!! | TTTTTGAGGAATTGTTTTTC+TGG | - | chr2.4:37420008-37420027 | MS.gene001412:intron | 25.0% |
| AAATAAGACTGCAAAAAGCA+AGG | + | chr2.4:37418933-37418952 | None:intergenic | 30.0% | |
| AACCTATACTCATCAAAATC+AGG | + | chr2.4:37419817-37419836 | None:intergenic | 30.0% | |
| AACTGGTCAACATAAATTGT+TGG | - | chr2.4:37418513-37418532 | MS.gene001412:intron | 30.0% | |
| AATAAGACTGCAAAAAGCAA+GGG | + | chr2.4:37418932-37418951 | None:intergenic | 30.0% | |
| ACACTAGTTAAACTAATGTG+TGG | - | chr2.4:37421640-37421659 | MS.gene001412:intron | 30.0% | |
| ACGAAAAGTAAAGACAAAAG+AGG | + | chr2.4:37421146-37421165 | None:intergenic | 30.0% | |
| ACTAACTCTAGTACTATTTC+AGG | - | chr2.4:37419718-37419737 | MS.gene001412:intron | 30.0% | |
| AGTAATAATGTAGATCTGAC+GGG | - | chr2.4:37420355-37420374 | MS.gene001412:intron | 30.0% | |
| ATACGACAAAGATATAAGGA+AGG | - | chr2.4:37420259-37420278 | MS.gene001412:intron | 30.0% | |
| ATGCAAAGGATATCAATTTG+AGG | - | chr2.4:37418442-37418461 | MS.gene001412:intron | 30.0% | |
| ATTTGGAAGATGGCTAAAAT+CGG | - | chr2.4:37419601-37419620 | MS.gene001412:intron | 30.0% | |
| CATTATTAAATCCACTGTTG+AGG | + | chr2.4:37418355-37418374 | None:intergenic | 30.0% | |
| GGTCAACAAAACAATGTATT+TGG | + | chr2.4:37418559-37418578 | None:intergenic | 30.0% | |
| GTGGAAGTTTCATAACTATT+TGG | - | chr2.4:37419584-37419603 | MS.gene001412:intron | 30.0% | |
| TAAAGGCCTAACAAAATGAT+GGG | - | chr2.4:37419632-37419651 | MS.gene001412:intron | 30.0% | |
| TAAATATAAGCATGCACGAT+CGG | + | chr2.4:37419891-37419910 | None:intergenic | 30.0% | |
| TAAGAGAACAAGATGCAATT+TGG | - | chr2.4:37419355-37419374 | MS.gene001412:intron | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | - | chr2.4:37418855-37418874 | MS.gene001412:intron | 30.0% | |
| TCCAATACGACAAAGATATA+AGG | - | chr2.4:37420255-37420274 | MS.gene001412:CDS | 30.0% | |
| TCCTTATATCTTTGTCGTAT+TGG | + | chr2.4:37420259-37420278 | None:intergenic | 30.0% | |
| TGCAAATTAAGGATCTATAG+AGG | + | chr2.4:37418999-37419018 | None:intergenic | 30.0% | |
| TTAAAGGCCTAACAAAATGA+TGG | - | chr2.4:37419631-37419650 | MS.gene001412:intron | 30.0% | |
| TTATAATTTCTCCTCAACAG+TGG | - | chr2.4:37418341-37418360 | MS.gene001412:CDS | 30.0% | |
| TTTCTTACTTGAATTGGGTT+TGG | + | chr2.4:37418096-37418115 | None:intergenic | 30.0% | |
| ! | AATTGGGTTTGGAGAAATTT+TGG | + | chr2.4:37418085-37418104 | None:intergenic | 30.0% |
| ! | CAACAGTGGATTTAATAATG+TGG | - | chr2.4:37418355-37418374 | MS.gene001412:intron | 30.0% |
| ! | TATACGAATACGGGTATTTT+AGG | + | chr2.4:37419203-37419222 | None:intergenic | 30.0% |
| ! | TGTTTATTTCATGCGAGTTT+TGG | - | chr2.4:37420226-37420245 | MS.gene001412:CDS | 30.0% |
| !! | AAACACAGTATTGTTGACTT+TGG | + | chr2.4:37421104-37421123 | None:intergenic | 30.0% |
| !! | AACACAGTATTGTTGACTTT+GGG | + | chr2.4:37421103-37421122 | None:intergenic | 30.0% |
| !! | TCTATAGATCCTTAATTTGC+AGG | - | chr2.4:37418998-37419017 | MS.gene001412:intron | 30.0% |
| !! | TGAATTCCTTTTGATTGTAG+GGG | + | chr2.4:37418054-37418073 | None:intergenic | 30.0% |
| !! | TTCCTGATTTTGATGAGTAT+AGG | - | chr2.4:37419812-37419831 | MS.gene001412:intron | 30.0% |
| !!! | AATTTTTTTTATGGGCTCAG+GGG | - | chr2.4:37419300-37419319 | MS.gene001412:intron | 30.0% |
| !!! | CACACACATTTTCTAAAGTT+AGG | + | chr2.4:37418169-37418188 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGGGACTA+AGG | - | chr2.4:37418584-37418603 | MS.gene001412:intron | 30.0% |
| !!! | TTTGGTTTTCTTTTAGCCAA+TGG | - | chr2.4:37420909-37420928 | MS.gene001412:intron | 30.0% |
| AAAAAACATGATTGCGCCAT+TGG | + | chr2.4:37420928-37420947 | None:intergenic | 35.0% | |
| AAACTAGGGAACACAATTGT+TGG | - | chr2.4:37421028-37421047 | MS.gene001412:intron | 35.0% | |
| AAATATCCAGAGAGAGTCAT+TGG | - | chr2.4:37421237-37421256 | MS.gene001412:intron | 35.0% | |
| AAATGTGTACGAATTGCAGT+TGG | - | chr2.4:37419534-37419553 | MS.gene001412:intron | 35.0% | |
| AACAATCCCCTACAATCAAA+AGG | - | chr2.4:37418045-37418064 | MS.gene001412:CDS | 35.0% | |
| ACCTTACAAGTGATAAGAGA+GGG | + | chr2.4:37420169-37420188 | None:intergenic | 35.0% | |
| AGATAACTGCAAGATAGACA+AGG | + | chr2.4:37418975-37418994 | None:intergenic | 35.0% | |
| AGTACTATTTCAGGCTTCTT+TGG | - | chr2.4:37419727-37419746 | MS.gene001412:intron | 35.0% | |
| AGTCTCATCTTCTTATGCAA+AGG | - | chr2.4:37418428-37418447 | MS.gene001412:intron | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | + | chr2.4:37418638-37418657 | None:intergenic | 35.0% | |
| ATCAACAACACTATATGGTG+AGG | - | chr2.4:37421714-37421733 | MS.gene001412:intron | 35.0% | |
| ATTTCTGCAATGTCCTATGT+AGG | - | chr2.4:37418949-37418968 | MS.gene001412:intron | 35.0% | |
| CAAGATCAGCATTTGTGTTT+GGG | - | chr2.4:37418388-37418407 | MS.gene001412:intron | 35.0% | |
| CCTACGTGTTAAAATTAGAG+TGG | + | chr2.4:37419096-37419115 | None:intergenic | 35.0% | |
| CTAGTTAAACTAATGTGTGG+TGG | - | chr2.4:37421643-37421662 | MS.gene001412:intron | 35.0% | |
| GAATCCTTTCTTGACTTTGT+TGG | + | chr2.4:37421825-37421844 | None:intergenic | 35.0% | |
| GCAATTCGTACACATTTAGA+GGG | + | chr2.4:37419531-37419550 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | - | chr2.4:37418854-37418873 | MS.gene001412:intron | 35.0% | |
| TACCTTACAAGTGATAAGAG+AGG | + | chr2.4:37420170-37420189 | None:intergenic | 35.0% | |
| TCAACAACACTATATGGTGA+GGG | - | chr2.4:37421715-37421734 | MS.gene001412:intron | 35.0% | |
| TCAAGATCAGCATTTGTGTT+TGG | - | chr2.4:37418387-37418406 | MS.gene001412:intron | 35.0% | |
| TCAGCACAATTAACTGCATA+TGG | - | chr2.4:37419784-37419803 | MS.gene001412:intron | 35.0% | |
| TCCAAAATGTAAGCACAAAC+TGG | - | chr2.4:37418496-37418515 | MS.gene001412:intron | 35.0% | |
| TGCAATTCGTACACATTTAG+AGG | + | chr2.4:37419532-37419551 | None:intergenic | 35.0% | |
| TGCAATTTGGATGCTGAAAT+TGG | - | chr2.4:37419368-37419387 | MS.gene001412:intron | 35.0% | |
| TGCAGTGTTTGTACTATTTG+TGG | - | chr2.4:37421679-37421698 | MS.gene001412:intron | 35.0% | |
| TGGAGTCAACATAGAATAGA+AGG | + | chr2.4:37420329-37420348 | None:intergenic | 35.0% | |
| TTAATTACATTATCAGCGGG+TGG | + | chr2.4:37419155-37419174 | None:intergenic | 35.0% | |
| TTGATCCCATTACTTGCATT+GGG | - | chr2.4:37420967-37420986 | MS.gene001412:intron | 35.0% | |
| TTTGATCCCATTACTTGCAT+TGG | - | chr2.4:37420966-37420985 | MS.gene001412:intron | 35.0% | |
| ! | ACCAGTTTGTGCTTACATTT+TGG | + | chr2.4:37418500-37418519 | None:intergenic | 35.0% |
| ! | GAAAGACCCATCATTTTGTT+AGG | + | chr2.4:37419641-37419660 | None:intergenic | 35.0% |
| ! | TTTTCATCATACTAGTGGAG+TGG | + | chr2.4:37421177-37421196 | None:intergenic | 35.0% |
| !! | AGCTAGTTTGATTTTGTCGT+TGG | + | chr2.4:37420816-37420835 | None:intergenic | 35.0% |
| !! | AGTATTGTTGACTTTGGGAT+TGG | + | chr2.4:37421098-37421117 | None:intergenic | 35.0% |
| !! | ATCACATGGATTAGCATCTT+TGG | - | chr2.4:37420891-37420910 | MS.gene001412:intron | 35.0% |
| !! | CCACTCTAATTTTAACACGT+AGG | - | chr2.4:37419093-37419112 | MS.gene001412:intron | 35.0% |
| !! | GTATTGTTGACTTTGGGATT+GGG | + | chr2.4:37421097-37421116 | None:intergenic | 35.0% |
| !! | TAGACTCTGCAACTTGTTTT+GGG | + | chr2.4:37418252-37418271 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTTCTGTCTAAC+TGG | + | chr2.4:37421791-37421810 | None:intergenic | 35.0% |
| !!! | AAACTGAAAGCACTTTTCTC+TGG | - | chr2.4:37419420-37419439 | MS.gene001412:intron | 35.0% |
| !!! | ATTTTTGGATTCGTCGATTC+CGG | - | chr2.4:37421465-37421484 | MS.gene001412:intron | 35.0% |
| !!! | TGCAACTTGTTTTGGGTTTT+TGG | + | chr2.4:37418245-37418264 | None:intergenic | 35.0% |
| !!! | TGCTTACATTTTGGAATCGA+GGG | + | chr2.4:37418491-37418510 | None:intergenic | 35.0% |
| AAACAGGATGTGATGAAGCA+TGG | - | chr2.4:37421756-37421775 | MS.gene001412:CDS | 40.0% | |
| AACAGGATGTGATGAAGCAT+GGG | - | chr2.4:37421757-37421776 | MS.gene001412:CDS | 40.0% | |
| AAGAGACCCAATGCAAGTAA+TGG | + | chr2.4:37420976-37420995 | None:intergenic | 40.0% | |
| AAGATAGACAAGGCCTACAT+AGG | + | chr2.4:37418965-37418984 | None:intergenic | 40.0% | |
| ACTACAAGAGGAACAGAAAC+TGG | + | chr2.4:37418023-37418042 | None:intergenic | 40.0% | |
| ACTATATGGTGAGGGATGAA+TGG | - | chr2.4:37421723-37421742 | MS.gene001412:CDS | 40.0% | |
| AGAGACCCAATGCAAGTAAT+GGG | + | chr2.4:37420975-37420994 | None:intergenic | 40.0% | |
| ATCTGTTGTTGCTCGCATTT+GGG | - | chr2.4:37421559-37421578 | MS.gene001412:CDS | 40.0% | |
| ATGCACTCACAAAAAAGCTG+TGG | - | chr2.4:37421502-37421521 | MS.gene001412:intron | 40.0% | |
| ATTTAGTGTATGCCGACAGA+AGG | + | chr2.4:37419947-37419966 | None:intergenic | 40.0% | |
| CAAAACAAGTTGCAGAGTCT+AGG | - | chr2.4:37418251-37418270 | MS.gene001412:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | - | chr2.4:37418859-37418878 | MS.gene001412:intron | 40.0% | |
| CTATATGGTGAGGGATGAAT+GGG | - | chr2.4:37421724-37421743 | MS.gene001412:CDS | 40.0% | |
| GAATACGAAGAGCAGATCTT+TGG | + | chr2.4:37419766-37419785 | None:intergenic | 40.0% | |
| GCTACCAACAAAGTCAAGAA+AGG | - | chr2.4:37421818-37421837 | MS.gene001412:CDS | 40.0% | |
| GGATTATGATACCCTTCTGT+CGG | - | chr2.4:37419932-37419951 | MS.gene001412:intron | 40.0% | |
| GTAGAATAGATTAGACGGTG+CGG | - | chr2.4:37419843-37419862 | MS.gene001412:intron | 40.0% | |
| TACACTGACAGACAGACAAA+TGG | - | chr2.4:37419686-37419705 | MS.gene001412:intron | 40.0% | |
| TAGGCATATTCGGTCTAGTA+TGG | - | chr2.4:37421528-37421547 | MS.gene001412:intron | 40.0% | |
| TTTAGTGTATGCCGACAGAA+GGG | + | chr2.4:37419946-37419965 | None:intergenic | 40.0% | |
| ! | CTACTGCGTTCTTCTTCTTT+TGG | + | chr2.4:37418218-37418237 | None:intergenic | 40.0% |
| ! | TCAGCATTTGTGTTTGGGAT+TGG | - | chr2.4:37418393-37418412 | MS.gene001412:intron | 40.0% |
| !! | CTAGACTCTGCAACTTGTTT+TGG | + | chr2.4:37418253-37418272 | None:intergenic | 40.0% |
| !! | GGCAGTTTTGCTCTTTGTTT+TGG | - | chr2.4:37419555-37419574 | MS.gene001412:intron | 40.0% |
| !!! | CTCTTTGTTTTGGCAAGATG+TGG | - | chr2.4:37419565-37419584 | MS.gene001412:intron | 40.0% |
| !!! | GTGCTTACATTTTGGAATCG+AGG | + | chr2.4:37418492-37418511 | None:intergenic | 40.0% |
| !!! | TTTTTGGATTCGTCGATTCC+GGG | - | chr2.4:37421466-37421485 | MS.gene001412:intron | 40.0% |
| ATCATACTAGTGGAGTGGCT+GGG | + | chr2.4:37421172-37421191 | None:intergenic | 45.0% | |
| ATTACCTTCATTGTGGTGCC+AGG | + | chr2.4:37419450-37419469 | None:intergenic | 45.0% | |
| CACAAAAAAGCTGTGGCTCT+AGG | - | chr2.4:37421509-37421528 | MS.gene001412:intron | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | - | chr2.4:37418841-37418860 | MS.gene001412:intron | 45.0% | |
| CATCTGTTGTTGCTCGCATT+TGG | - | chr2.4:37421558-37421577 | MS.gene001412:CDS | 45.0% | |
| GAATGGGTGGAAGATGAAAC+AGG | - | chr2.4:37421740-37421759 | MS.gene001412:CDS | 45.0% | |
| GAGGGTTCTTCTATCTATGC+TGG | + | chr2.4:37419513-37419532 | None:intergenic | 45.0% | |
| GCAAAACCAATGACTCTCTC+TGG | + | chr2.4:37421246-37421265 | None:intergenic | 45.0% | |
| GCCCTCTCTTATCACTTGTA+AGG | - | chr2.4:37420165-37420184 | MS.gene001412:intron | 45.0% | |
| GGGGATTGTTTCACTACAAG+AGG | + | chr2.4:37418035-37418054 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2.4:37418863-37418882 | MS.gene001412:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2.4:37418882-37418863 | None:intergenic | 45.0% | |
| AATGGTCCTCCACATCCTTG+TGG | - | chr2.4:37421070-37421089 | MS.gene001412:intron | 50.0% | |
| AGATCCTGGCACCACAATGA+AGG | - | chr2.4:37419443-37419462 | MS.gene001412:intron | 50.0% | |
| CATCATACTAGTGGAGTGGC+TGG | + | chr2.4:37421173-37421192 | None:intergenic | 50.0% | |
| CATGCACGATCGGCTAATGT+GGG | + | chr2.4:37419881-37419900 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2.4:37418862-37418881 | MS.gene001412:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2.4:37418881-37418862 | None:intergenic | 50.0% | |
| TATGGTGAGGGATGAATGGG+TGG | - | chr2.4:37421727-37421746 | MS.gene001412:CDS | 50.0% | |
| TGCATGAATCCCATGCATCC+CGG | + | chr2.4:37421487-37421506 | None:intergenic | 50.0% | |
| TGTCGTTGGATGAGACGATG+AGG | + | chr2.4:37420802-37420821 | None:intergenic | 50.0% | |
| !! | ACTTTGGGATTGGGACCACA+AGG | + | chr2.4:37421088-37421107 | None:intergenic | 50.0% |
| !! | GCACTTTTCTCTGGAGATCC+TGG | - | chr2.4:37419429-37419448 | MS.gene001412:intron | 50.0% |
| !! | GCTGTGGCTCTAGGCATATT+CGG | - | chr2.4:37421518-37421537 | MS.gene001412:intron | 50.0% |
| AGACGGTGCGGTGCTTTCAT+GGG | - | chr2.4:37419855-37419874 | MS.gene001412:intron | 55.0% | |
| GCATGCACGATCGGCTAATG+TGG | + | chr2.4:37419882-37419901 | None:intergenic | 55.0% | |
| GGATTGGGACCACAAGGATG+TGG | + | chr2.4:37421082-37421101 | None:intergenic | 55.0% | |
| GTTGTTGCTCGCATTTGGGC+AGG | - | chr2.4:37421563-37421582 | MS.gene001412:CDS | 55.0% | |
| TAGACGGTGCGGTGCTTTCA+TGG | - | chr2.4:37419854-37419873 | MS.gene001412:intron | 55.0% | |
| TTGGGACCACAAGGATGTGG+AGG | + | chr2.4:37421079-37421098 | None:intergenic | 55.0% | |
| !! | TCGTCGATTCCGGGATGCAT+GGG | - | chr2.4:37421475-37421494 | MS.gene001412:intron | 55.0% |
| !! | TTCGTCGATTCCGGGATGCA+TGG | - | chr2.4:37421474-37421493 | MS.gene001412:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37417981 | 37421847 | 37417981 | ID=MS.gene001412 |
| chr2.4 | mRNA | 37417981 | 37421847 | 37417981 | ID=MS.gene001412.t1;Parent=MS.gene001412 |
| chr2.4 | exon | 37421721 | 37421847 | 37421721 | ID=MS.gene001412.t1.exon1;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37421721 | 37421847 | 37421721 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37421556 | 37421621 | 37421556 | ID=MS.gene001412.t1.exon2;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37421556 | 37421621 | 37421556 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37421365 | 37421467 | 37421365 | ID=MS.gene001412.t1.exon3;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37421365 | 37421467 | 37421365 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37420809 | 37420883 | 37420809 | ID=MS.gene001412.t1.exon4;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37420809 | 37420883 | 37420809 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37420364 | 37420508 | 37420364 | ID=MS.gene001412.t1.exon5;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37420364 | 37420508 | 37420364 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37420206 | 37420275 | 37420206 | ID=MS.gene001412.t1.exon6;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37420206 | 37420275 | 37420206 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37420023 | 37420088 | 37420023 | ID=MS.gene001412.t1.exon7;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37420023 | 37420088 | 37420023 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37418244 | 37418366 | 37418244 | ID=MS.gene001412.t1.exon8;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37418244 | 37418366 | 37418244 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| chr2.4 | exon | 37417981 | 37418144 | 37417981 | ID=MS.gene001412.t1.exon9;Parent=MS.gene001412.t1 |
| chr2.4 | CDS | 37417981 | 37418144 | 37417981 | ID=cds.MS.gene001412.t1;Parent=MS.gene001412.t1 |
| Gene Sequence |
| Protein sequence |
