AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35163

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35163.t1 MTR_4g096880 99.764 423 1 0 1 423 1 423 0.0 880
MS.gene35163.t1 MTR_4g073080 53.165 395 168 5 21 414 17 395 8.00e-142 410
MS.gene35163.t1 MTR_2g039250 31.651 436 248 12 17 415 58 480 1.46e-61 207
MS.gene35163.t1 MTR_2g100090 29.148 446 256 12 17 415 17 449 4.85e-50 176
MS.gene35163.t1 MTR_8g080700 29.825 285 158 7 119 373 156 428 1.37e-30 123
MS.gene35163.t1 MTR_5g024090 28.657 335 183 14 110 408 141 455 1.26e-24 105
MS.gene35163.t1 MTR_2g016160 23.411 299 187 6 105 403 54 310 1.20e-18 86.7
MS.gene35163.t1 MTR_2g016160 24.571 175 117 2 230 404 64 223 1.94e-11 65.1
MS.gene35163.t1 MTR_5g016370 26.840 231 132 10 182 404 351 552 8.75e-15 76.6
MS.gene35163.t1 MTR_4g095058 26.556 241 140 10 174 406 326 537 1.22e-14 76.3
MS.gene35163.t1 MTR_4g095058 26.556 241 140 10 174 406 324 535 1.32e-14 76.3
MS.gene35163.t1 MTR_5g016350 26.778 239 138 10 174 404 267 476 1.85e-14 75.5
MS.gene35163.t1 MTR_5g016350 26.778 239 138 10 174 404 331 540 1.87e-14 75.9
MS.gene35163.t1 MTR_5g097870 27.778 180 114 3 177 349 250 420 8.38e-13 70.1
MS.gene35163.t1 MTR_5g097870 27.778 180 114 3 177 349 250 420 9.53e-13 70.1
MS.gene35163.t1 MTR_4g011950 25.123 203 130 5 194 385 30 221 1.34e-12 70.1
MS.gene35163.t1 MTR_2g012630 27.885 208 121 9 194 389 73 263 1.68e-12 70.1
MS.gene35163.t1 MTR_2g012630 25.592 211 129 8 194 404 31 213 6.63e-11 65.1
MS.gene35163.t1 MTR_2g012630 27.885 208 121 9 194 389 73 263 1.70e-12 70.1
MS.gene35163.t1 MTR_2g012630 25.592 211 129 8 194 404 31 213 8.14e-11 64.7
MS.gene35163.t1 MTR_2g102277 24.631 203 131 5 194 385 30 221 2.63e-12 69.3
MS.gene35163.t1 MTR_2g102277 24.631 203 131 5 194 385 30 221 2.65e-12 69.3
MS.gene35163.t1 MTR_6g004040 25.000 192 122 7 221 411 10 180 6.72e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35163.t1 AT5G58230 88.942 416 46 0 1 416 1 416 0.0 776
MS.gene35163.t1 AT2G16780 53.555 422 164 8 2 414 5 403 3.16e-152 437
MS.gene35163.t1 AT4G35050 52.439 410 175 6 6 409 4 399 1.38e-147 426
MS.gene35163.t1 AT2G19520 32.353 442 240 13 17 415 64 489 1.49e-62 210
MS.gene35163.t1 AT4G29730 29.412 442 251 12 13 415 50 469 1.28e-55 191
MS.gene35163.t1 AT4G29730 29.008 393 225 11 13 373 50 420 6.63e-45 162
MS.gene35163.t1 AT4G29730 29.008 393 225 11 13 373 50 420 6.63e-45 162
MS.gene35163.t1 AT2G19540 29.375 320 187 9 119 408 153 463 6.75e-31 124
MS.gene35163.t1 AT1G29260 25.957 235 152 4 169 403 97 309 3.95e-17 82.4
MS.gene35163.t1 AT1G29260 28.000 175 111 2 230 404 63 222 6.26e-14 72.8
MS.gene35163.t1 AT1G52360 25.616 203 129 5 194 385 30 221 8.61e-13 70.9
MS.gene35163.t1 AT1G52360 25.616 203 129 5 194 385 30 221 8.61e-13 70.9
MS.gene35163.t1 AT1G52360 25.616 203 129 5 194 385 30 221 9.55e-13 70.9
MS.gene35163.t1 AT2G32950 25.941 239 157 8 114 347 241 464 1.20e-12 70.1
MS.gene35163.t1 AT1G11160 28.431 204 125 9 194 389 31 221 1.22e-12 70.5
MS.gene35163.t1 AT1G52360 25.616 203 129 5 194 385 74 265 1.34e-12 70.5
MS.gene35163.t1 AT2G32950 25.941 239 157 8 114 347 354 577 1.45e-12 70.1
MS.gene35163.t1 AT1G11160 26.000 250 134 8 184 389 21 263 1.59e-12 70.1
MS.gene35163.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.66e-12 70.1
MS.gene35163.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.70e-12 70.1
MS.gene35163.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.77e-12 70.1
MS.gene35163.t1 AT1G11160 26.000 250 134 8 184 389 21 263 2.01e-12 69.7
MS.gene35163.t1 AT1G11160 26.000 250 134 8 184 389 21 263 2.02e-12 69.7
MS.gene35163.t1 AT3G49660 29.224 219 138 9 163 372 6 216 3.99e-12 67.4
MS.gene35163.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.74e-12 68.6
MS.gene35163.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.74e-12 68.6
MS.gene35163.t1 AT5G08390 25.000 192 122 7 221 411 10 180 4.79e-12 68.6
MS.gene35163.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.83e-12 68.6
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.13e-12 68.6
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.54e-12 68.2
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene35163.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.84e-12 68.2
MS.gene35163.t1 AT5G13480 24.286 280 165 12 127 402 136 372 3.57e-11 65.5
MS.gene35163.t1 AT5G13480 24.286 280 165 12 127 402 113 349 3.58e-11 65.5
MS.gene35163.t1 AT5G13480 24.286 280 165 12 127 402 125 361 3.60e-11 65.5
MS.gene35163.t1 AT5G13480 24.286 280 165 12 127 402 113 349 3.75e-11 65.5
MS.gene35163.t1 AT1G79990 24.631 203 131 5 194 385 30 221 4.48e-11 65.5
MS.gene35163.t1 AT1G79990 24.631 203 131 5 194 385 30 221 4.83e-11 65.5
MS.gene35163.t1 AT2G43770 26.160 237 143 10 170 404 45 251 5.45e-11 63.9

Find 95 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAGACAGTCTCATTCTT+TGG 0.230384 4.4:-19233530 None:intergenic
ATTTGTTTGTGGGATATTAA+TGG 0.257426 4.4:+19231366 MS.gene35163:CDS
CTGTGCGAGCATGAGGTAAT+TGG 0.260060 4.4:-19230989 None:intergenic
CGTCCTGAAGTTGGAGGGTT+TGG 0.303486 4.4:+19231066 MS.gene35163:CDS
GCATCAAGAGACTTATTCTT+AGG 0.319433 4.4:-19231393 None:intergenic
ATGATCAGTATTTGCTTGTA+TGG 0.322224 4.4:+19231592 MS.gene35163:CDS
CCATCAATTGGAGGCTTAGA+AGG 0.322579 4.4:-19231234 None:intergenic
GGGGCCTGTGCTGACTGTTC+TGG 0.324266 4.4:-19234551 None:intergenic
CCAAGACAGTCTCATTCTTT+GGG 0.329902 4.4:-19233529 None:intergenic
CTTTCAATCCCTTCAATGAA+TGG 0.340735 4.4:+19233300 MS.gene35163:CDS
CCTTCTAAGCCTCCAATTGA+TGG 0.346065 4.4:+19231234 MS.gene35163:CDS
TTGAGGCATGAGTATTTGTT+TGG 0.347301 4.4:+19231558 MS.gene35163:CDS
TGTCCTCTTAACCTCAAATC+AGG 0.355268 4.4:-19231267 None:intergenic
AAGACAACATACTTCAAATA+TGG 0.358936 4.4:+19234489 MS.gene35163:CDS
CATGGAACCCATGTGAAGAT+TGG 0.363420 4.4:+19234447 MS.gene35163:CDS
TCAACGAAGAATACAAAATC+TGG 0.373066 4.4:+19230809 MS.gene35163:CDS
CATCTTCCACAACACCTTCA+TGG 0.374230 4.4:-19231524 None:intergenic
GTCTTGGCTTCTTGTTGTCT+TGG 0.378706 4.4:+19233545 MS.gene35163:CDS
AAACAAGGTCATTTGCTTAG+TGG 0.381789 4.4:+19231327 MS.gene35163:CDS
AGTATTTGTTTGGTTCTGTT+GGG 0.383674 4.4:+19231568 MS.gene35163:CDS
TGGCTTCTTGTTGTCTTGGT+AGG 0.395080 4.4:+19233549 MS.gene35163:CDS
CAACCAAACCCTCCAACTTC+AGG 0.396221 4.4:-19231069 None:intergenic
GGACATAATACTGAAGGTTA+TGG 0.401530 4.4:+19231285 MS.gene35163:CDS
CCGGCGGGTTCAGTGCGATC+TGG 0.403346 4.4:-19230910 None:intergenic
AACCCTGATTTGAGGTTAAG+AGG 0.408019 4.4:+19231264 MS.gene35163:CDS
CTGAAGGTTATGGTTTGTCT+TGG 0.425247 4.4:+19231295 MS.gene35163:CDS
GGGTTACAACTTCCATCAAT+TGG 0.425575 4.4:-19231246 None:intergenic
GCAAAATATCTGACTTCTCA+TGG 0.436410 4.4:+19234429 MS.gene35163:CDS
GAGTATTTGTTTGGTTCTGT+TGG 0.442494 4.4:+19231567 MS.gene35163:CDS
GGAGGGTTTGGTTGTGCGAA+TGG 0.452217 4.4:+19231078 MS.gene35163:CDS
TTGTGGGATCTGCGCAAGAT+TGG 0.469154 4.4:+19233359 MS.gene35163:CDS
TGAGCAATGCAAGACTGAAC+AGG 0.469797 4.4:-19231642 None:intergenic
TCTTTGGGTTCCAGCCAACC+TGG 0.471969 4.4:-19233514 None:intergenic
GGACCATCTTCAGCATCCTC+TGG 0.473998 4.4:-19234371 None:intergenic
TGATGCTCAGATTTGTTTGT+GGG 0.482057 4.4:+19231356 MS.gene35163:CDS
TGTGCGAGCATGAGGTAATT+GGG 0.482873 4.4:-19230988 None:intergenic
GAGGGTTTGGTTGTGCGAAT+GGG 0.487731 4.4:+19231079 MS.gene35163:CDS
CGGACAAAACAGTGAAATTG+TGG 0.487959 4.4:+19233342 MS.gene35163:CDS
GATGACGATCGTCCTGAAGT+TGG 0.499636 4.4:+19231057 MS.gene35163:CDS
AAGATGTGGCTTGGCATTTG+AGG 0.499952 4.4:+19231541 MS.gene35163:CDS
AGCAACTATCCATTCATTGA+AGG 0.510302 4.4:-19233309 None:intergenic
ATGATGCTCAGATTTGTTTG+TGG 0.513746 4.4:+19231355 MS.gene35163:CDS
AATGAATGGATAGTTGCTAC+TGG 0.517233 4.4:+19233314 MS.gene35163:CDS
TGATGGTGTGGGATCTTAGC+AGG 0.518950 4.4:+19233576 MS.gene35163:CDS
TGATCAGTATTTGCTTGTAT+GGG 0.519134 4.4:+19231593 MS.gene35163:CDS
ATGGAACCCATGTGAAGATT+GGG 0.525962 4.4:+19234448 MS.gene35163:CDS
TTACAACTTCCATCAATTGG+AGG 0.527832 4.4:-19231243 None:intergenic
GATAGTTGCTACTGGTTCTA+CGG 0.527969 4.4:+19233322 MS.gene35163:CDS
CCCAAAGAATGAGACTGTCT+TGG 0.529129 4.4:+19233529 MS.gene35163:CDS
TTGTCTTGGTAGGAGACTGA+TGG 0.532965 4.4:+19233559 MS.gene35163:CDS
CTGAGTTCAATTACATTAAG+GGG 0.543271 4.4:-19234570 None:intergenic
GCAACTATCCATTCATTGAA+GGG 0.546007 4.4:-19233308 None:intergenic
TCACCAGAGGATGCTGAAGA+TGG 0.548104 4.4:+19234368 MS.gene35163:CDS
GGACAAAACAGTGAAATTGT+GGG 0.548577 4.4:+19233343 MS.gene35163:CDS
GGCCATCTCTCACCGTCGAA+TGG 0.548676 4.4:+19230884 MS.gene35163:CDS
TCGATTGTTTAGGTCCATGA+AGG 0.552925 4.4:+19231510 MS.gene35163:intron
TACTAAGACGGTTAGTGCTG+AGG 0.555717 4.4:+19231185 MS.gene35163:CDS
AGATTGGGTTGTTGCTAGTG+TGG 0.562356 4.4:+19234463 MS.gene35163:CDS
ATTCAACAGATTAATCATGA+TGG 0.562715 4.4:+19231114 MS.gene35163:CDS
TCATCACTCATGCTCTCGAA+TGG 0.565461 4.4:+19230863 MS.gene35163:CDS
GTTTGGTTGTGCGAATGGGA+AGG 0.569019 4.4:+19231083 MS.gene35163:CDS
GACGATCGTCCTGAAGTTGG+AGG 0.569228 4.4:+19231060 MS.gene35163:CDS
GTATTTGTTTGGTTCTGTTG+GGG 0.571264 4.4:+19231569 MS.gene35163:CDS
CAATTACCTCATGCTCGCAC+AGG 0.571545 4.4:+19230990 MS.gene35163:CDS
GTTGAACCTGTGCGAGCATG+AGG 0.573425 4.4:-19230996 None:intergenic
GTCCTCTTAACCTCAAATCA+GGG 0.573483 4.4:-19231266 None:intergenic
GAAGTTGTAACCCTGATTTG+AGG 0.574752 4.4:+19231256 MS.gene35163:CDS
AGCCATTCGACGGTGAGAGA+TGG 0.578728 4.4:-19230886 None:intergenic
TTGGTAGGAGACTGATGGTG+TGG 0.580867 4.4:+19233564 MS.gene35163:CDS
CTGGCATATCATCTTCGTCA+TGG 0.595465 4.4:-19234532 None:intergenic
TTTCGGAAGTGTGGGTCCCG+AGG 0.597109 4.4:-19230960 None:intergenic
CCAGATCGCACTGAACCCGC+CGG 0.601917 4.4:+19230910 MS.gene35163:CDS
TCTTGGAGTAAGTTTAAACA+AGG 0.603010 4.4:+19231312 MS.gene35163:CDS
TTAGGTCCATGAAGGTGTTG+TGG 0.608540 4.4:+19231518 MS.gene35163:intron
TGGTAGGAGACTGATGGTGT+GGG 0.611927 4.4:+19233565 MS.gene35163:CDS
GATGACGAGATCGTAGAGGA+AGG 0.612226 4.4:-19230845 None:intergenic
ATGTTACTTATGGCAATCAA+AGG 0.614738 4.4:-19233396 None:intergenic
ACAGATTAATCATGATGGTG+AGG 0.616848 4.4:+19231119 MS.gene35163:CDS
GCAACAACCCAATCTTCACA+TGG 0.617675 4.4:-19234455 None:intergenic
CATACTTCAAATATGGCAGA+TGG 0.618787 4.4:+19234496 MS.gene35163:CDS
ACGATCGTCCTGAAGTTGGA+GGG 0.619003 4.4:+19231061 MS.gene35163:CDS
TTAAGAGGACATAATACTGA+AGG 0.624264 4.4:+19231279 MS.gene35163:CDS
GCAATCACAAAACTATTCTG+AGG 0.629163 4.4:-19231162 None:intergenic
ATGACGAGATCGTAGAGGAA+GGG 0.633340 4.4:-19230844 None:intergenic
TATGCCAGAACAGTCAGCAC+AGG 0.635935 4.4:+19234547 MS.gene35163:CDS
GCGATCTGGAAGCCATTCGA+CGG 0.637412 4.4:-19230896 None:intergenic
TGAAGGTGTTGTGGAAGATG+TGG 0.639816 4.4:+19231527 MS.gene35163:CDS
AAAGAAGACGAAGAAATGAG+AGG 0.647955 4.4:+19230766 MS.gene35163:CDS
GTGTTGTGGAAGATGTGGCT+TGG 0.652239 4.4:+19231532 MS.gene35163:CDS
CGACGAAGAGCAGTCACCAG+AGG 0.657267 4.4:+19234355 MS.gene35163:CDS
TTGCATTGCTCATTCAAGCG+AGG 0.660555 4.4:+19231653 MS.gene35163:CDS
TGAACAGGCTTAGTAACAGA+CGG 0.667956 4.4:-19231627 None:intergenic
ATGGTGAGGTTAATAGAGCG+AGG 0.684540 4.4:+19231133 MS.gene35163:CDS
GAGTGATGACGAGATCGTAG+AGG 0.687500 4.4:-19230849 None:intergenic
CAACAACCCAATCTTCACAT+GGG 0.694803 4.4:-19234454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATAGAAAAATCTA+CGG - chr4.4:19233425-19233444 None:intergenic 10.0%
!! ATTTGTTTGTATATAATATA+TGG + chr4.4:19234021-19234040 MS.gene35163:intron 10.0%
!! TTAATATATGAATCAAATAA+TGG - chr4.4:19234275-19234294 None:intergenic 10.0%
!! TTTGTTTGTATATAATATAT+GGG + chr4.4:19234022-19234041 MS.gene35163:intron 10.0%
!!! TTTTATCTATATTTAAATCT+AGG + chr4.4:19231683-19231702 MS.gene35163:intron 10.0%
!! TAAATAATAAACTTAAAAGC+CGG + chr4.4:19233709-19233728 MS.gene35163:intron 15.0%
!!! TAGTTTTTTATGCTTTTTAT+AGG - chr4.4:19232671-19232690 None:intergenic 15.0%
!!! TTAATTTTGTTGTTTTTTGT+TGG + chr4.4:19231455-19231474 MS.gene35163:intron 15.0%
!!! TTTTACATTTGGTTTTTTTA+AGG + chr4.4:19231729-19231748 MS.gene35163:intron 15.0%
!!! TTTTCTTTATATAATGACAT+TGG + chr4.4:19233254-19233273 MS.gene35163:intron 15.0%
!! AACTTAATATAACTCAAGAA+AGG - chr4.4:19233845-19233864 None:intergenic 20.0%
!! ATATGAAAATAAATTAAGCG+TGG + chr4.4:19232433-19232452 MS.gene35163:intron 20.0%
!! TGATAATTGAAAACTAAACA+CGG + chr4.4:19232964-19232983 MS.gene35163:intron 20.0%
!! TTAAAAAATTGACAATTGAG+AGG - chr4.4:19233763-19233782 None:intergenic 20.0%
!!! AAGGAAGTATAATTAGTTTA+GGG + chr4.4:19231748-19231767 MS.gene35163:intron 20.0%
!!! ATAATAAGCTCTTTTACATT+TGG + chr4.4:19232058-19232077 MS.gene35163:intron 20.0%
!!! ATTTTAACTTGAAACATTTG+AGG - chr4.4:19234205-19234224 None:intergenic 20.0%
!!! ATTTTTAAGGTATTCTTGTT+TGG + chr4.4:19231423-19231442 MS.gene35163:intron 20.0%
!!! CGCTTAATTTATTTTCATAT+TGG - chr4.4:19232433-19232452 None:intergenic 20.0%
!!! TAAGGAAGTATAATTAGTTT+AGG + chr4.4:19231747-19231766 MS.gene35163:intron 20.0%
!!! TAATAAGCTCTTTTACATTT+GGG + chr4.4:19232059-19232078 MS.gene35163:intron 20.0%
!!! TAATATCACTATGTTTTGAT+GGG - chr4.4:19232898-19232917 None:intergenic 20.0%
!!! TTATAAGCTCTTTTTACATT+TGG + chr4.4:19231718-19231737 MS.gene35163:intron 20.0%
!!! TTTTAACTTGAAACATTTGA+GGG - chr4.4:19234204-19234223 None:intergenic 20.0%
! AAATGTTAGAAGTTAGTTGT+TGG + chr4.4:19234101-19234120 MS.gene35163:intron 25.0%
! AAATTTCGAGATTAATGAGT+TGG + chr4.4:19232699-19232718 MS.gene35163:intron 25.0%
! AACAACTAACTTCTAACATT+TGG - chr4.4:19234102-19234121 None:intergenic 25.0%
! AAGACAACATACTTCAAATA+TGG + chr4.4:19234489-19234508 MS.gene35163:CDS 25.0%
! AATCACAATATACCAAAACT+CGG - chr4.4:19233674-19233693 None:intergenic 25.0%
! ATTCAACAGATTAATCATGA+TGG + chr4.4:19231114-19231133 MS.gene35163:CDS 25.0%
! ATTTGTTTGTGGGATATTAA+TGG + chr4.4:19231366-19231385 MS.gene35163:CDS 25.0%
! TGTATATAATATATGGGCTT+CGG + chr4.4:19234028-19234047 MS.gene35163:intron 25.0%
! TTAATCTAGACAATTGTTTG+TGG + chr4.4:19232185-19232204 MS.gene35163:intron 25.0%
!! AGTATAATTAGTTTAGGGTT+TGG + chr4.4:19231753-19231772 MS.gene35163:intron 25.0%
!! CAAGGAAGTATAATTAGTTT+AGG + chr4.4:19232086-19232105 MS.gene35163:intron 25.0%
!! TAATGACATTGGATTTTGTT+AGG + chr4.4:19233265-19233284 MS.gene35163:intron 25.0%
!! TGAAAGTAACAACTATTTTG+TGG + chr4.4:19232210-19232229 MS.gene35163:intron 25.0%
!! TGAGTTGGATAGAAAAATAT+TGG + chr4.4:19232714-19232733 MS.gene35163:intron 25.0%
!! TTAATCCAGACAATTGTTTT+TGG + chr4.4:19231831-19231850 MS.gene35163:intron 25.0%
!!! CTAATATCACTATGTTTTGA+TGG - chr4.4:19232899-19232918 None:intergenic 25.0%
!!! TGTCAATTTTTTAACCTCAT+GGG + chr4.4:19233769-19233788 MS.gene35163:intron 25.0%
!!! TTGATCTAGATTGTTGTTTT+CGG + chr4.4:19233471-19233490 MS.gene35163:intron 25.0%
!!! TTGTCAATTTTTTAACCTCA+TGG + chr4.4:19233768-19233787 MS.gene35163:intron 25.0%
!!! TTTTGTTGTTTTTTGTTGGT+TGG + chr4.4:19231459-19231478 MS.gene35163:intron 25.0%
AAAACTCGGTAAACATTTCA+GGG - chr4.4:19233660-19233679 None:intergenic 30.0%
AAGTTCTGTAATGAGACTAA+TGG + chr4.4:19233860-19233879 MS.gene35163:intron 30.0%
ACTTAATTCGCTAAAAAGAG+TGG - chr4.4:19233807-19233826 None:intergenic 30.0%
ATGATCAGTATTTGCTTGTA+TGG + chr4.4:19231592-19231611 MS.gene35163:CDS 30.0%
ATTATCCAAAACAAACTCCT+AGG - chr4.4:19232043-19232062 None:intergenic 30.0%
ATTTGCATTGCATAAAGCAT+CGG - chr4.4:19232011-19232030 None:intergenic 30.0%
CAAGTTAAAATGTCTATCGT+GGG + chr4.4:19234214-19234233 MS.gene35163:intron 30.0%
CACACTAATTTCCACAAAAT+AGG - chr4.4:19231871-19231890 None:intergenic 30.0%
CCATGAATAAAAAGCAATTC+TGG - chr4.4:19234398-19234417 None:intergenic 30.0%
TAAGAGAAACTTTAATCCAG+TGG - chr4.4:19233740-19233759 None:intergenic 30.0%
TACACTAAAAAGTCCAGATA+TGG - chr4.4:19233623-19233642 None:intergenic 30.0%
TCAACGAAGAATACAAAATC+TGG + chr4.4:19230809-19230828 MS.gene35163:CDS 30.0%
TCAAGTTAAAATGTCTATCG+TGG + chr4.4:19234213-19234232 MS.gene35163:intron 30.0%
TCTTGGAGTAAGTTTAAACA+AGG + chr4.4:19231312-19231331 MS.gene35163:CDS 30.0%
TGAAAATAAATTAAGCGTGG+CGG + chr4.4:19232436-19232455 MS.gene35163:intron 30.0%
TGAATAAAAAGCAATTCTGG+TGG - chr4.4:19234395-19234414 None:intergenic 30.0%
TGATCAGTATTTGCTTGTAT+GGG + chr4.4:19231593-19231612 MS.gene35163:CDS 30.0%
TTAAGAGGACATAATACTGA+AGG + chr4.4:19231279-19231298 MS.gene35163:CDS 30.0%
TTAATATTTACTCCTTCGTC+CGG + chr4.4:19234125-19234144 MS.gene35163:intron 30.0%
TTGAAAATCTGAGTAAAGAC+AGG - chr4.4:19233112-19233131 None:intergenic 30.0%
TTGTGTTGAAAGACTTCATT+CGG + chr4.4:19232935-19232954 MS.gene35163:intron 30.0%
! ATGTTACTTATGGCAATCAA+AGG - chr4.4:19233399-19233418 None:intergenic 30.0%
! ATTTTGTGGAAATTAGTGTG+AGG + chr4.4:19231871-19231890 MS.gene35163:intron 30.0%
! ATTTTGTTAGGTTAACTGCT+TGG + chr4.4:19233277-19233296 MS.gene35163:intron 30.0%
! GTGTTATTGTTCGATTGTTT+AGG + chr4.4:19231500-19231519 MS.gene35163:intron 30.0%
! TGATGCTCATCAGATTTTTA+AGG + chr4.4:19231410-19231429 MS.gene35163:CDS 30.0%
! TGTTGTTCACTCTTTTATGT+AGG + chr4.4:19234330-19234349 MS.gene35163:intron 30.0%
! TTTTGTGATTGCTACTAAGA+CGG + chr4.4:19231173-19231192 MS.gene35163:CDS 30.0%
! TTTTGTGGAAATTAGTGTGA+GGG + chr4.4:19231872-19231891 MS.gene35163:intron 30.0%
!! ACTCTTTTTAGCGAATTAAG+TGG + chr4.4:19233806-19233825 MS.gene35163:intron 30.0%
!! ACTGACTTTTGTTGTATATG+GGG + chr4.4:19233972-19233991 MS.gene35163:intron 30.0%
!! AGTATTTGTTTGGTTCTGTT+GGG + chr4.4:19231568-19231587 MS.gene35163:CDS 30.0%
!! AGTTGATGGGAAAATTTCAT+TGG + chr4.4:19232394-19232413 MS.gene35163:intron 30.0%
!! CTTTTACATTTGGGTTTTCA+AGG + chr4.4:19232068-19232087 MS.gene35163:intron 30.0%
!!! CACTGACTTTTGTTGTATAT+GGG + chr4.4:19233971-19233990 MS.gene35163:intron 30.0%
!!! CCAGAATTGCTTTTTATTCA+TGG + chr4.4:19234395-19234414 MS.gene35163:CDS 30.0%
!!! GAATTGCTTTTTATTCATGG+TGG + chr4.4:19234398-19234417 MS.gene35163:CDS 30.0%
!!! TGATCTAGATTGTTGTTTTC+GGG + chr4.4:19233472-19233491 MS.gene35163:intron 30.0%
AAACAAGGTCATTTGCTTAG+TGG + chr4.4:19231327-19231346 MS.gene35163:CDS 35.0%
AAAGAAGACGAAGAAATGAG+AGG + chr4.4:19230766-19230785 MS.gene35163:CDS 35.0%
AAAGTCGAATTAGAGCACAA+CGG - chr4.4:19233161-19233180 None:intergenic 35.0%
AACTTGAAACATTTGAGGGT+TGG - chr4.4:19234200-19234219 None:intergenic 35.0%
AATGAATGGATAGTTGCTAC+TGG + chr4.4:19233314-19233333 MS.gene35163:CDS 35.0%
ACATCAAAGTCCAAAGATCA+GGG - chr4.4:19233949-19233968 None:intergenic 35.0%
AGAAACTTTAATCCAGTGGA+AGG - chr4.4:19233736-19233755 None:intergenic 35.0%
AGCAACTATCCATTCATTGA+AGG - chr4.4:19233312-19233331 None:intergenic 35.0%
ATAACATGCACCATTCAAAC+TGG + chr4.4:19231962-19231981 MS.gene35163:intron 35.0%
ATGTTAAGTGGACAGATACA+GGG + chr4.4:19232288-19232307 MS.gene35163:intron 35.0%
CAAAACTCGGTAAACATTTC+AGG - chr4.4:19233661-19233680 None:intergenic 35.0%
CAACACAATGTTGAACCTTT+CGG - chr4.4:19232923-19232942 None:intergenic 35.0%
CATACTTCAAATATGGCAGA+TGG + chr4.4:19234496-19234515 MS.gene35163:CDS 35.0%
CATAGTGATATTAGACCGAA+AGG + chr4.4:19232905-19232924 MS.gene35163:intron 35.0%
CATCGTCAATATTTGAGAAC+TGG + chr4.4:19233007-19233026 MS.gene35163:intron 35.0%
CTTTCAATCCCTTCAATGAA+TGG + chr4.4:19233300-19233319 MS.gene35163:CDS 35.0%
GAATTACTAGAGGTAGAAGA+AGG + chr4.4:19232645-19232664 MS.gene35163:intron 35.0%
GCAAAATATCTGACTTCTCA+TGG + chr4.4:19234429-19234448 MS.gene35163:CDS 35.0%
GCAACTATCCATTCATTGAA+GGG - chr4.4:19233311-19233330 None:intergenic 35.0%
GCAATCACAAAACTATTCTG+AGG - chr4.4:19231165-19231184 None:intergenic 35.0%
GCATCAAGAGACTTATTCTT+AGG - chr4.4:19231396-19231415 None:intergenic 35.0%
GCTTTATGCAATGCAAATGT+GGG + chr4.4:19232013-19232032 MS.gene35163:intron 35.0%
GGACAAAACAGTGAAATTGT+GGG + chr4.4:19233343-19233362 MS.gene35163:CDS 35.0%
GGACATAATACTGAAGGTTA+TGG + chr4.4:19231285-19231304 MS.gene35163:CDS 35.0%
GTGGCTATATTTCACATATC+TGG + chr4.4:19233056-19233075 MS.gene35163:intron 35.0%
TAACATGCACCATTCAAACT+GGG + chr4.4:19231963-19231982 MS.gene35163:intron 35.0%
TAATATTTACTCCTTCGTCC+GGG + chr4.4:19234126-19234145 MS.gene35163:intron 35.0%
TACACTAGACAAGATAGGAT+TGG + chr4.4:19232487-19232506 MS.gene35163:intron 35.0%
TACATCAAAGTCCAAAGATC+AGG - chr4.4:19233950-19233969 None:intergenic 35.0%
TCAAGCCAAAAACAATTGTC+TGG - chr4.4:19231839-19231858 None:intergenic 35.0%
TGAATCTGTCAAAATGAGCA+TGG + chr4.4:19231900-19231919 MS.gene35163:intron 35.0%
TGCTTTATGCAATGCAAATG+TGG + chr4.4:19232012-19232031 MS.gene35163:intron 35.0%
TGTGTTGAAAGACTTCATTC+GGG + chr4.4:19232936-19232955 MS.gene35163:intron 35.0%
TTACAACTTCCATCAATTGG+AGG - chr4.4:19231246-19231265 None:intergenic 35.0%
TTGAGGCATGAGTATTTGTT+TGG + chr4.4:19231558-19231577 MS.gene35163:CDS 35.0%
! AATCAACAGAAGCATGCAAT+TGG - chr4.4:19234000-19234019 None:intergenic 35.0%
! ACAGATTAATCATGATGGTG+AGG + chr4.4:19231119-19231138 MS.gene35163:CDS 35.0%
! ATGATGCTCAGATTTGTTTG+TGG + chr4.4:19231355-19231374 MS.gene35163:CDS 35.0%
! CTGAAATGTTTACCGAGTTT+TGG + chr4.4:19233659-19233678 MS.gene35163:intron 35.0%
! GAAAGTAGCAACCTATTTTG+TGG + chr4.4:19231857-19231876 MS.gene35163:intron 35.0%
! TATGATGTGCTGTTGTAAGA+GGG + chr4.4:19232759-19232778 MS.gene35163:intron 35.0%
! TCCACTATCTTTTCTACCAT+CGG - chr4.4:19232547-19232566 None:intergenic 35.0%
! TCTACGGAGAATGTTACTTA+TGG - chr4.4:19233409-19233428 None:intergenic 35.0%
! TGATGCTCAGATTTGTTTGT+GGG + chr4.4:19231356-19231375 MS.gene35163:CDS 35.0%
! TTATGATGTGCTGTTGTAAG+AGG + chr4.4:19232758-19232777 MS.gene35163:intron 35.0%
!! AAAGTACTGCTCAAGTTGAT+GGG + chr4.4:19232381-19232400 MS.gene35163:intron 35.0%
!! AATGAAAGCATCACCATATC+TGG + chr4.4:19233607-19233626 MS.gene35163:intron 35.0%
!! GAGTATTTGTTTGGTTCTGT+TGG + chr4.4:19231567-19231586 MS.gene35163:CDS 35.0%
!! GTATTTGTTTGGTTCTGTTG+GGG + chr4.4:19231569-19231588 MS.gene35163:CDS 35.0%
!! TAGAAAAGATAGTGGAAACC+AGG + chr4.4:19232551-19232570 MS.gene35163:intron 35.0%
!!! ATCACTATGTTTTGATGGGT+TGG - chr4.4:19232894-19232913 None:intergenic 35.0%
!!! GCACTGACTTTTGTTGTATA+TGG + chr4.4:19233970-19233989 MS.gene35163:intron 35.0%
!!! TCACTATGTTTTGATGGGTT+GGG - chr4.4:19232893-19232912 None:intergenic 35.0%
AAGGACAATAGATCAGATGG+AGG + chr4.4:19232621-19232640 MS.gene35163:intron 40.0%
ACCGATGGTAGAAAAGATAG+TGG + chr4.4:19232543-19232562 MS.gene35163:intron 40.0%
AGATGGAGGAGAATTACTAG+AGG + chr4.4:19232635-19232654 MS.gene35163:intron 40.0%
ATGGAACCCATGTGAAGATT+GGG + chr4.4:19234448-19234467 MS.gene35163:CDS 40.0%
ATGTGCTAGGTGGAAAGATA+TGG + chr4.4:19231933-19231952 MS.gene35163:intron 40.0%
CAACAACCCAATCTTCACAT+GGG - chr4.4:19234457-19234476 None:intergenic 40.0%
CATCAAAGTCCAAAGATCAG+GGG - chr4.4:19233948-19233967 None:intergenic 40.0%
CATGTTAAGTGGACAGATAC+AGG + chr4.4:19232287-19232306 MS.gene35163:intron 40.0%
CCAAGACAGTCTCATTCTTT+GGG - chr4.4:19233532-19233551 None:intergenic 40.0%
CGGACAAAACAGTGAAATTG+TGG + chr4.4:19233342-19233361 MS.gene35163:CDS 40.0%
CGTAAGGACAATAGATCAGA+TGG + chr4.4:19232618-19232637 MS.gene35163:intron 40.0%
CTGATCTATTGTCCTTACGA+CGG - chr4.4:19232617-19232636 None:intergenic 40.0%
CTGTATCTGTCCACTTAACA+TGG - chr4.4:19232289-19232308 None:intergenic 40.0%
GACAGGAAATTCTATCAGCA+AGG - chr4.4:19233095-19233114 None:intergenic 40.0%
GGAACTTTAATTCACCCATG+AGG - chr4.4:19233786-19233805 None:intergenic 40.0%
GGGTTACAACTTCCATCAAT+TGG - chr4.4:19231249-19231268 None:intergenic 40.0%
GTCCTCTTAACCTCAAATCA+GGG - chr4.4:19231269-19231288 None:intergenic 40.0%
GTGTTGAAAGACTTCATTCG+GGG + chr4.4:19232937-19232956 MS.gene35163:intron 40.0%
TATGCAATGCAAATGTGGGA+GGG + chr4.4:19232017-19232036 MS.gene35163:intron 40.0%
TCGATTGTTTAGGTCCATGA+AGG + chr4.4:19231510-19231529 MS.gene35163:intron 40.0%
TGAACAGGCTTAGTAACAGA+CGG - chr4.4:19231630-19231649 None:intergenic 40.0%
TGGAAATTAGTGTGAGGGAT+TGG + chr4.4:19231877-19231896 MS.gene35163:intron 40.0%
TGGGTGGTTGAAATGGAATA+GGG + chr4.4:19232335-19232354 MS.gene35163:intron 40.0%
TGTCAAAATGAGCATGGCAT+GGG + chr4.4:19232259-19232278 MS.gene35163:intron 40.0%
TGTCCTCTTAACCTCAAATC+AGG - chr4.4:19231270-19231289 None:intergenic 40.0%
TGTGGTACACTAGACAAGAT+AGG + chr4.4:19232482-19232501 MS.gene35163:intron 40.0%
TTATGCAATGCAAATGTGGG+AGG + chr4.4:19232016-19232035 MS.gene35163:intron 40.0%
TTCAAACTGGGTGGTTGAAA+TGG + chr4.4:19231975-19231994 MS.gene35163:intron 40.0%
TTTCAACCACCCAGTTTGAA+TGG - chr4.4:19231975-19231994 None:intergenic 40.0%
! AACCCTGATTTGAGGTTAAG+AGG + chr4.4:19231264-19231283 MS.gene35163:CDS 40.0%
! AGGGCCTCAAGTATTTTATG+CGG + chr4.4:19232354-19232373 MS.gene35163:intron 40.0%
! CTGAAGGTTATGGTTTGTCT+TGG + chr4.4:19231295-19231314 MS.gene35163:CDS 40.0%
! GAAGTTGTAACCCTGATTTG+AGG + chr4.4:19231256-19231275 MS.gene35163:CDS 40.0%
! GAGGTAATTGGGTTCGTTTT+CGG - chr4.4:19230980-19230999 None:intergenic 40.0%
! TTGGACGGAGTAATCTTTTC+CGG - chr4.4:19230932-19230951 None:intergenic 40.0%
!! AGTTTAGGGTTTGGTTCTGT+GGG + chr4.4:19232101-19232120 MS.gene35163:intron 40.0%
!! GAAAGTACTGCTCAAGTTGA+TGG + chr4.4:19232380-19232399 MS.gene35163:intron 40.0%
!! GATAGTTGCTACTGGTTCTA+CGG + chr4.4:19233322-19233341 MS.gene35163:CDS 40.0%
!! TAGTTTAGGGTTTGGTTCTG+TGG + chr4.4:19232100-19232119 MS.gene35163:intron 40.0%
!!! ATTGTTGTTTTCGGGTTCAC+AGG + chr4.4:19233480-19233499 MS.gene35163:intron 40.0%
!!! TTGTTGTTTTCGGGTTCACA+GGG + chr4.4:19233481-19233500 MS.gene35163:intron 40.0%
AAACACGCACCATTCAAGCT+GGG + chr4.4:19232316-19232335 MS.gene35163:intron 45.0%
AAACCAGGCTTAGGTGGTTT+GGG + chr4.4:19232566-19232585 MS.gene35163:intron 45.0%
ACAACATTTGAGAGAGAGCC+GGG + chr4.4:19232515-19232534 MS.gene35163:intron 45.0%
ATGACGAGATCGTAGAGGAA+GGG - chr4.4:19230847-19230866 None:intergenic 45.0%
ATGGTGAGGTTAATAGAGCG+AGG + chr4.4:19231133-19231152 MS.gene35163:CDS 45.0%
CATCTTCCACAACACCTTCA+TGG - chr4.4:19231527-19231546 None:intergenic 45.0%
CATGGAACCCATGTGAAGAT+TGG + chr4.4:19234447-19234466 MS.gene35163:CDS 45.0%
CATGGGGATACCATGTTAAG+TGG + chr4.4:19232276-19232295 MS.gene35163:intron 45.0%
CCATCAATTGGAGGCTTAGA+AGG - chr4.4:19231237-19231256 None:intergenic 45.0%
CCCAAAGAATGAGACTGTCT+TGG + chr4.4:19233529-19233548 MS.gene35163:CDS 45.0%
CCTTCTAAGCCTCCAATTGA+TGG + chr4.4:19231234-19231253 MS.gene35163:CDS 45.0%
CGCACCGCATAAAATACTTG+AGG - chr4.4:19232361-19232380 None:intergenic 45.0%
CTGGCATATCATCTTCGTCA+TGG - chr4.4:19234535-19234554 None:intergenic 45.0%
CTGGGTGGTTGAAATGGAAT+AGG + chr4.4:19232334-19232353 MS.gene35163:intron 45.0%
CTGTCAAAATGAGCATGGCA+TGG + chr4.4:19232258-19232277 MS.gene35163:intron 45.0%
CTTTAATCCAGTGGAAGGAC+CGG - chr4.4:19233731-19233750 None:intergenic 45.0%
GACAACATTTGAGAGAGAGC+CGG + chr4.4:19232514-19232533 MS.gene35163:intron 45.0%
GACATGTGTATTCCGTCGTA+AGG + chr4.4:19232602-19232621 MS.gene35163:intron 45.0%
GCAACAACCCAATCTTCACA+TGG - chr4.4:19234458-19234477 None:intergenic 45.0%
GCCAAGACAGTCTCATTCTT+TGG - chr4.4:19233533-19233552 None:intergenic 45.0%
GTCAAAATGAGCATGGCATG+GGG + chr4.4:19232260-19232279 MS.gene35163:intron 45.0%
TAAACACGCACCATTCAAGC+TGG + chr4.4:19232315-19232334 MS.gene35163:intron 45.0%
TACTAAGACGGTTAGTGCTG+AGG + chr4.4:19231185-19231204 MS.gene35163:CDS 45.0%
TCATCACTCATGCTCTCGAA+TGG + chr4.4:19230863-19230882 MS.gene35163:CDS 45.0%
TCCGTCCAAAAACTCATCCT+CGG + chr4.4:19230943-19230962 MS.gene35163:CDS 45.0%
TGAAAGACTTCATTCGGGGT+GGG + chr4.4:19232941-19232960 MS.gene35163:intron 45.0%
TGAGCAATGCAAGACTGAAC+AGG - chr4.4:19231645-19231664 None:intergenic 45.0%
TGTCAAAATGAGCATGGCCT+GGG + chr4.4:19231906-19231925 MS.gene35163:intron 45.0%
TGTGCGAGCATGAGGTAATT+GGG - chr4.4:19230991-19231010 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr4.4:19232328-19232347 MS.gene35163:intron 45.0%
TTGAAAGACTTCATTCGGGG+TGG + chr4.4:19232940-19232959 MS.gene35163:intron 45.0%
TTGCATTGCTCATTCAAGCG+AGG + chr4.4:19231653-19231672 MS.gene35163:CDS 45.0%
TTGTCTTGGTAGGAGACTGA+TGG + chr4.4:19233559-19233578 MS.gene35163:CDS 45.0%
TTTCAACCACCCAGCTTGAA+TGG - chr4.4:19232328-19232347 None:intergenic 45.0%
! AAATTAAGCGTGGCGGAGAT+AGG + chr4.4:19232443-19232462 MS.gene35163:intron 45.0%
! AAGATGTGGCTTGGCATTTG+AGG + chr4.4:19231541-19231560 MS.gene35163:CDS 45.0%
! AATTAAGCGTGGCGGAGATA+GGG + chr4.4:19232444-19232463 MS.gene35163:intron 45.0%
! AGATTGGGTTGTTGCTAGTG+TGG + chr4.4:19234463-19234482 MS.gene35163:CDS 45.0%
! CTACGGGATAACGAGGTATT+GGG - chr4.4:19234158-19234177 None:intergenic 45.0%
! GTCTTGGCTTCTTGTTGTCT+TGG + chr4.4:19233545-19233564 MS.gene35163:CDS 45.0%
! TGGCTTCTTGTTGTCTTGGT+AGG + chr4.4:19233549-19233568 MS.gene35163:CDS 45.0%
!! AGATAGTGGAAACCAGGCTT+AGG + chr4.4:19232557-19232576 MS.gene35163:intron 45.0%
!! AGCTCAACTGGTTTGAGCTA+CGG - chr4.4:19234175-19234194 None:intergenic 45.0%
!! GTAATGACGAGCGTCGTTTT+CGG - chr4.4:19231037-19231056 None:intergenic 45.0%
!! TGAAGGTGTTGTGGAAGATG+TGG + chr4.4:19231527-19231546 MS.gene35163:CDS 45.0%
!! TGCATTGCATAAAGCATCGG+AGG - chr4.4:19232008-19232027 None:intergenic 45.0%
!! TTAGGTCCATGAAGGTGTTG+TGG + chr4.4:19231518-19231537 MS.gene35163:intron 45.0%
ACGATCGTCCTGAAGTTGGA+GGG + chr4.4:19231061-19231080 MS.gene35163:CDS 50.0%
AGTCCAAAGATCAGGGGACA+TGG - chr4.4:19233942-19233961 None:intergenic 50.0%
ATACCCAAACCACCTAAGCC+TGG - chr4.4:19232572-19232591 None:intergenic 50.0%
CAACATTTGAGAGAGAGCCG+GGG + chr4.4:19232516-19232535 MS.gene35163:intron 50.0%
CAACCAAACCCTCCAACTTC+AGG - chr4.4:19231072-19231091 None:intergenic 50.0%
CAATTACCTCATGCTCGCAC+AGG + chr4.4:19230990-19231009 MS.gene35163:CDS 50.0%
CATGCACCATTCAAACTGGG+TGG + chr4.4:19231966-19231985 MS.gene35163:intron 50.0%
CCGTCCAAAAACTCATCCTC+GGG + chr4.4:19230944-19230963 MS.gene35163:CDS 50.0%
CGGAGATAGGGATGTTGTGT+TGG + chr4.4:19232456-19232475 MS.gene35163:intron 50.0%
CTGTCAAAATGAGCATGGCC+TGG + chr4.4:19231905-19231924 MS.gene35163:intron 50.0%
CTGTGCGAGCATGAGGTAAT+TGG - chr4.4:19230992-19231011 None:intergenic 50.0%
GAAACCAGGCTTAGGTGGTT+TGG + chr4.4:19232565-19232584 MS.gene35163:intron 50.0%
GATGACGAGATCGTAGAGGA+AGG - chr4.4:19230848-19230867 None:intergenic 50.0%
GATGACGATCGTCCTGAAGT+TGG + chr4.4:19231057-19231076 MS.gene35163:CDS 50.0%
GCTACGGGATAACGAGGTAT+TGG - chr4.4:19234159-19234178 None:intergenic 50.0%
GGGATGTTGTGTTGGATGTG+TGG + chr4.4:19232464-19232483 MS.gene35163:intron 50.0%
GTCAAAATGAGCATGGCCTG+GGG + chr4.4:19231907-19231926 MS.gene35163:intron 50.0%
GTCCAAAGATCAGGGGACAT+GGG - chr4.4:19233941-19233960 None:intergenic 50.0%
GTGTTGTGGAAGATGTGGCT+TGG + chr4.4:19231532-19231551 MS.gene35163:CDS 50.0%
GTTTGAGCTACGGGATAACG+AGG - chr4.4:19234165-19234184 None:intergenic 50.0%
GTTTGGTTGTGCGAATGGGA+AGG + chr4.4:19231083-19231102 MS.gene35163:CDS 50.0%
TAGTGGAAACCAGGCTTAGG+TGG + chr4.4:19232560-19232579 MS.gene35163:intron 50.0%
TATGCCAGAACAGTCAGCAC+AGG + chr4.4:19234547-19234566 MS.gene35163:CDS 50.0%
TCACCAGAGGATGCTGAAGA+TGG + chr4.4:19234368-19234387 MS.gene35163:CDS 50.0%
TCCACTCTGCAGTTGTACAG+TGG + chr4.4:19233037-19233056 MS.gene35163:intron 50.0%
TGAGGGTTGGATAGCTCAAC+TGG - chr4.4:19234187-19234206 None:intergenic 50.0%
TTAAAAGCCGGTCCTTCCAC+TGG + chr4.4:19233721-19233740 MS.gene35163:intron 50.0%
TTGTGGGATCTGCGCAAGAT+TGG + chr4.4:19233359-19233378 MS.gene35163:CDS 50.0%
! ACGGAGTAATCTTTTCCGGC+GGG - chr4.4:19230928-19230947 None:intergenic 50.0%
! GACGGAGTAATCTTTTCCGG+CGG - chr4.4:19230929-19230948 None:intergenic 50.0%
! GAGGGTTTGGTTGTGCGAAT+GGG + chr4.4:19231079-19231098 MS.gene35163:CDS 50.0%
! GAGTGATGACGAGATCGTAG+AGG - chr4.4:19230852-19230871 None:intergenic 50.0%
! TGATGGTGTGGGATCTTAGC+AGG + chr4.4:19233576-19233595 MS.gene35163:CDS 50.0%
! TGGGTTCGTTTTCGGAAGTG+TGG - chr4.4:19230972-19230991 None:intergenic 50.0%
! TGGTAGGAGACTGATGGTGT+GGG + chr4.4:19233565-19233584 MS.gene35163:CDS 50.0%
! TTGGTAGGAGACTGATGGTG+TGG + chr4.4:19233564-19233583 MS.gene35163:CDS 50.0%
!! CCCGAGGATGAGTTTTTGGA+CGG - chr4.4:19230947-19230966 None:intergenic 50.0%
!! CGAGGTATTGGGTTCAAACC+CGG - chr4.4:19234147-19234166 None:intergenic 50.0%
!! GAGGGCCTAGGAGTTTGTTT+TGG + chr4.4:19232035-19232054 MS.gene35163:intron 50.0%
!! GCTCAACTGGTTTGAGCTAC+GGG - chr4.4:19234174-19234193 None:intergenic 50.0%
!! GGGTTCGTTTTCGGAAGTGT+GGG - chr4.4:19230971-19230990 None:intergenic 50.0%
!!! TTGTTTTCGGGTTCACAGGG+AGG + chr4.4:19233484-19233503 MS.gene35163:intron 50.0%
AGCCATTCGACGGTGAGAGA+TGG - chr4.4:19230889-19230908 None:intergenic 55.0%
ATGCAAATGTGGGAGGGCCT+AGG + chr4.4:19232023-19232042 MS.gene35163:intron 55.0%
CACCCATGTCCCCTGATCTT+TGG + chr4.4:19233936-19233955 MS.gene35163:intron 55.0%
CCACCTAGCACATTATCCCC+AGG - chr4.4:19231926-19231945 None:intergenic 55.0%
CCTGGGGATAATGTGCTAGG+TGG + chr4.4:19231923-19231942 MS.gene35163:intron 55.0%
CGTCCTGAAGTTGGAGGGTT+TGG + chr4.4:19231066-19231085 MS.gene35163:CDS 55.0%
CTGGGTGGTTGAAATGGAGC+CGG + chr4.4:19231981-19232000 MS.gene35163:intron 55.0%
GACGATCGTCCTGAAGTTGG+AGG + chr4.4:19231060-19231079 MS.gene35163:CDS 55.0%
GCCACTGTACAACTGCAGAG+TGG - chr4.4:19233041-19233060 None:intergenic 55.0%
GCGATCTGGAAGCCATTCGA+CGG - chr4.4:19230899-19230918 None:intergenic 55.0%
GGACCATCTTCAGCATCCTC+TGG - chr4.4:19234374-19234393 None:intergenic 55.0%
GTTGAACCTGTGCGAGCATG+AGG - chr4.4:19230999-19231018 None:intergenic 55.0%
TGGCCTGGGGATAATGTGCT+AGG + chr4.4:19231920-19231939 MS.gene35163:intron 55.0%
TGGGTGGTTGAAATGGAGCC+GGG + chr4.4:19231982-19232001 MS.gene35163:intron 55.0%
TTGGGTTCAAACCCGGACGA+AGG - chr4.4:19234140-19234159 None:intergenic 55.0%
! AGGGAGGAGGTTTTCCAGGT+TGG + chr4.4:19233500-19233519 MS.gene35163:intron 55.0%
! CGTTTTCGGAGTCGTCGAGA+GGG - chr4.4:19231023-19231042 None:intergenic 55.0%
! GGAGGGTTTGGTTGTGCGAA+TGG + chr4.4:19231078-19231097 MS.gene35163:CDS 55.0%
! GGGTCCCGAGGATGAGTTTT+TGG - chr4.4:19230951-19230970 None:intergenic 55.0%
! TCACAGGGAGGAGGTTTTCC+AGG + chr4.4:19233496-19233515 MS.gene35163:intron 55.0%
! TCGTTTTCGGAGTCGTCGAG+AGG - chr4.4:19231024-19231043 None:intergenic 55.0%
! TCTTTGGGTTCCAGCCAACC+TGG - chr4.4:19233517-19233536 None:intergenic 55.0%
!! AGGAGGTTTTCCAGGTTGGC+TGG + chr4.4:19233504-19233523 MS.gene35163:CDS 55.0%
!! TGCATAAAGCATCGGAGGCC+CGG - chr4.4:19232003-19232022 None:intergenic 55.0%
!! TTCTACCATCGGTGCTACCC+CGG - chr4.4:19232536-19232555 None:intergenic 55.0%
!!! TTTTCGGGTTCACAGGGAGG+AGG + chr4.4:19233487-19233506 MS.gene35163:intron 55.0%
CACGCACCATTCAAGCTGGG+TGG + chr4.4:19232319-19232338 MS.gene35163:intron 60.0%
CGACGAAGAGCAGTCACCAG+AGG + chr4.4:19234355-19234374 MS.gene35163:CDS 60.0%
GGCCATCTCTCACCGTCGAA+TGG + chr4.4:19230884-19230903 MS.gene35163:CDS 60.0%
! TTTCGGAAGTGTGGGTCCCG+AGG - chr4.4:19230963-19230982 None:intergenic 60.0%
CCAGATCGCACTGAACCCGC+CGG + chr4.4:19230910-19230929 MS.gene35163:CDS 65.0%
!! GGGGCCTGTGCTGACTGTTC+TGG - chr4.4:19234554-19234573 None:intergenic 65.0%
! CCGGCGGGTTCAGTGCGATC+TGG - chr4.4:19230913-19230932 None:intergenic 70.0%
! GAGAGCCGGGGTAGCACCGA+TGG + chr4.4:19232528-19232547 MS.gene35163:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 19230760 19234577 19230760 ID=MS.gene35163
chr4.4 mRNA 19230760 19234577 19230760 ID=MS.gene35163.t1;Parent=MS.gene35163
chr4.4 exon 19230760 19231431 19230760 ID=MS.gene35163.t1.exon1;Parent=MS.gene35163.t1
chr4.4 CDS 19230760 19231431 19230760 ID=cds.MS.gene35163.t1;Parent=MS.gene35163.t1
chr4.4 exon 19231522 19231674 19231522 ID=MS.gene35163.t1.exon2;Parent=MS.gene35163.t1
chr4.4 CDS 19231522 19231674 19231522 ID=cds.MS.gene35163.t1;Parent=MS.gene35163.t1
chr4.4 exon 19233287 19233411 19233287 ID=MS.gene35163.t1.exon3;Parent=MS.gene35163.t1
chr4.4 CDS 19233287 19233411 19233287 ID=cds.MS.gene35163.t1;Parent=MS.gene35163.t1
chr4.4 exon 19233502 19233597 19233502 ID=MS.gene35163.t1.exon4;Parent=MS.gene35163.t1
chr4.4 CDS 19233502 19233597 19233502 ID=cds.MS.gene35163.t1;Parent=MS.gene35163.t1
chr4.4 exon 19234352 19234577 19234352 ID=MS.gene35163.t1.exon5;Parent=MS.gene35163.t1
chr4.4 CDS 19234352 19234577 19234352 ID=cds.MS.gene35163.t1;Parent=MS.gene35163.t1
Gene Sequence

>MS.gene35163

ATGGGGAAAGAAGACGAAGAAATGAGAGGCGAAATAGAAGAACGAATAATCAACGAAGAATACAAAATCTGGAAGAAAAACAGTCCCTTCCTCTACGATCTCGTCATCACTCATGCTCTCGAATGGCCATCTCTCACCGTCGAATGGCTTCCAGATCGCACTGAACCCGCCGGAAAAGATTACTCCGTCCAAAAACTCATCCTCGGGACCCACACTTCCGAAAACGAACCCAATTACCTCATGCTCGCACAGGTTCAACTCCCTCTCGACGACTCCGAAAACGACGCTCGTCATTACGATGACGATCGTCCTGAAGTTGGAGGGTTTGGTTGTGCGAATGGGAAGGTTCAGATAATTCAACAGATTAATCATGATGGTGAGGTTAATAGAGCGAGGTATATGCCTCAGAATAGTTTTGTGATTGCTACTAAGACGGTTAGTGCTGAGGTTTATGTGTTTGATTATAGTAAACATCCTTCTAAGCCTCCAATTGATGGAAGTTGTAACCCTGATTTGAGGTTAAGAGGACATAATACTGAAGGTTATGGTTTGTCTTGGAGTAAGTTTAAACAAGGTCATTTGCTTAGTGGTTCTGATGATGCTCAGATTTGTTTGTGGGATATTAATGGTACTCCTAAGAATAAGTCTCTTGATGCTCATCAGATTTTTAAGGTATTCTTGTTTGGTTTTTCGACTTAATTTTGTTGTTTTTTGTTGGTTGGTTTGTTGTTGATGATTTTGTGTTATTGTTCGATTGTTTAGGTCCATGAAGGTGTTGTGGAAGATGTGGCTTGGCATTTGAGGCATGAGTATTTGTTTGGTTCTGTTGGGGATGATCAGTATTTGCTTGTATGGGATCTGAGAACACCGTCTGTTACTAAGCCTGTTCAGTCTTGCATTGCTCATTCAAGCGAGGTGTGTTGTTTTATCTATATTTAAATCTAGGAATTTATTTTGTTTATAAGCTCTTTTTACATTTGGTTTTTTTAAGGAAGTATAATTAGTTTAGGGTTTGGTTTTGTGAGAATATGAGTTTTTGTTGCATATTCTCTGATTTGTGTTAAAATAGATTTAATCCAGACAATTGTTTTTGGCTTGAAAGTAGCAACCTATTTTGTGGAAATTAGTGTGAGGGATTGGTGAATCTGTCAAAATGAGCATGGCCTGGGGATAATGTGCTAGGTGGAAAGATATGGCGAAGTATAACATGCACCATTCAAACTGGGTGGTTGAAATGGAGCCGGGCCTCCGATGCTTTATGCAATGCAAATGTGGGAGGGCCTAGGAGTTTGTTTTGGATAATAAGCTCTTTTACATTTGGGTTTTCAAGGAAGTATAATTAGTTTAGGGTTTGGTTCTGTGGGAATATGCATTTGTTTGATGCGAGTTTTTGTTGCATATTCTCTGATTTGTGTAAAAATAGATTTAATCTAGACAATTGTTTGTGGCTTGAAAGTAACAACTATTTTGTGGAAATTAGTGTGAGGGATTGGTGAATCTGTCAAAATGAGCATGGCATGGGGATACCATGTTAAGTGGACAGATACAGGGAAGTTAAACACGCACCATTCAAGCTGGGTGGTTGAAATGGAATAGGGCCTCAAGTATTTTATGCGGTGCGAAAGTACTGCTCAAGTTGATGGGAAAATTTCATTGGACAACTCTAAGAACCAATATGAAAATAAATTAAGCGTGGCGGAGATAGGGATGTTGTGTTGGATGTGTGGTACACTAGACAAGATAGGATTGGAAATGACAACATTTGAGAGAGAGCCGGGGTAGCACCGATGGTAGAAAAGATAGTGGAAACCAGGCTTAGGTGGTTTGGGTATGTAGAAAGAAGACATGTGTATTCCGTCGTAAGGACAATAGATCAGATGGAGGAGAATTACTAGAGGTAGAAGAAGGCCTATAAAAAGCATAAAAAACTATTGAAGAAAAATTTCGAGATTAATGAGTTGGATAGAAAAATATTGGTTGTTGTTGTTTAGATATGAATTATGATGTGCTGTTGTAAGAGGGAATTTGAAACATTGACTTATATTTTGTGATTATTCTAAAATTATCAATTTATTACTGTTCAATCTTCATTATATCTTTTGAAATTTATGAGTTTATGAGAATGTTTGACCCAACCCATCAAAACATAGTGATATTAGACCGAAAGGTTCAACATTGTGTTGAAAGACTTCATTCGGGGTGGGTGATAATTGAAAACTAAACACGGATAATGCATAAATTTTCAATCATCGTCAATATTTGAGAACTGGACATGACTCCACTCTGCAGTTGTACAGTGGCTATATTTCACATATCTGGCTTCTCATATTTTCCTTGCTGATAGAATTTCCTGTCTTTACTCAGATTTTCAATCTGTTAGCTTCTTATAATGTCTTATCCGTTGTGCTCTAATTCGACTTTTTCTTTTAGCAGTGTTCTAGAGTTTTCACAATGCTGATATTGTTCTCAATATATATATTACTTCTAATAACACTTTTCTTTATATAATGACATTGGATTTTGTTAGGTTAACTGCTTGGCTTTCAATCCCTTCAATGAATGGATAGTTGCTACTGGTTCTACGGACAAAACAGTGAAATTGTGGGATCTGCGCAAGATTGGCAATGTTCTTCACACCTTTGATTGCCATAAGTAACATTCTCCGTAGATTTTTCTATATTTATTCTAGATGTAATTATATTTAACAGATATTGATCTAGATTGTTGTTTTCGGGTTCACAGGGAGGAGGTTTTCCAGGTTGGCTGGAACCCAAAGAATGAGACTGTCTTGGCTTCTTGTTGTCTTGGTAGGAGACTGATGGTGTGGGATCTTAGCAGGTATTGCTTAATGAAAGCATCACCATATCTGGACTTTTTAGTGTATTTTTTATCTGTTTCCCTGAAATGTTTACCGAGTTTTGGTATATTGTGATTCATTAGCGATGTTTATAAATAATAAACTTAAAAGCCGGTCCTTCCACTGGATTAAAGTTTCTCTTACCTCTCAATTGTCAATTTTTTAACCTCATGGGTGAATTAAAGTTCCACTCTTTTTAGCGAATTAAGTGGACAGCAAATTCTGCCTTTCTTGAGTTATATTAAGTTCTGTAATGAGACTAATGGAGTAATTGACATAATCATTATCATGTGAACATTGATATCAAATCAGTTGTCGACACCCATGTCCCCTGATCTTTGGACTTTGATGTAGCACTGACTTTTGTTGTATATGGGGTTCCAATTGCATGCTTCTGTTGATTCATTTGTTTGTATATAATATATGGGCTTCGGTACTTGTAATGCACAGCTTGAGTGTTACAATTTTATTCTTTTTTAATGCCAAATGTTAGAAGTTAGTTGTTGGATTAATATTTACTCCTTCGTCCGGGTTTGAACCCAATACCTCGTTATCCCGTAGCTCAAACCAGTTGAGCTATCCAACCCTCAAATGTTTCAAGTTAAAATGTCTATCGTGGGTTGATTTTCTGATGAAAACGAACTACTAAAAAATACCATTATTTGATTCATATATTAAGAAGTCATATATGTAAGATATATTTGCGATGACAATGTTGTTCACTCTTTTATGTAGGATCGACGAAGAGCAGTCACCAGAGGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCATACAAGCAAAATATCTGACTTCTCATGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATATGCCAGAACAGTCAGCACAGGCCCCTTAA
Protein sequence

>MS.gene35163.t1

MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPAGKDYSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQQINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKLWDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSAQAP