AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028296

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028296.t1 MTR_4g096880 99.764 423 1 0 1 423 1 423 0.0 880
MS.gene028296.t1 MTR_4g073080 53.165 395 168 5 21 414 17 395 8.00e-142 410
MS.gene028296.t1 MTR_2g039250 31.651 436 248 12 17 415 58 480 1.46e-61 207
MS.gene028296.t1 MTR_2g100090 29.148 446 256 12 17 415 17 449 4.85e-50 176
MS.gene028296.t1 MTR_8g080700 29.825 285 158 7 119 373 156 428 1.37e-30 123
MS.gene028296.t1 MTR_5g024090 28.657 335 183 14 110 408 141 455 1.26e-24 105
MS.gene028296.t1 MTR_2g016160 23.411 299 187 6 105 403 54 310 1.20e-18 86.7
MS.gene028296.t1 MTR_2g016160 24.571 175 117 2 230 404 64 223 1.94e-11 65.1
MS.gene028296.t1 MTR_5g016370 26.840 231 132 10 182 404 351 552 8.75e-15 76.6
MS.gene028296.t1 MTR_4g095058 26.556 241 140 10 174 406 326 537 1.22e-14 76.3
MS.gene028296.t1 MTR_4g095058 26.556 241 140 10 174 406 324 535 1.32e-14 76.3
MS.gene028296.t1 MTR_5g016350 26.778 239 138 10 174 404 267 476 1.85e-14 75.5
MS.gene028296.t1 MTR_5g016350 26.778 239 138 10 174 404 331 540 1.87e-14 75.9
MS.gene028296.t1 MTR_5g097870 27.778 180 114 3 177 349 250 420 8.38e-13 70.1
MS.gene028296.t1 MTR_5g097870 27.778 180 114 3 177 349 250 420 9.53e-13 70.1
MS.gene028296.t1 MTR_4g011950 25.123 203 130 5 194 385 30 221 1.34e-12 70.1
MS.gene028296.t1 MTR_2g012630 27.885 208 121 9 194 389 73 263 1.68e-12 70.1
MS.gene028296.t1 MTR_2g012630 25.592 211 129 8 194 404 31 213 6.63e-11 65.1
MS.gene028296.t1 MTR_2g012630 27.885 208 121 9 194 389 73 263 1.70e-12 70.1
MS.gene028296.t1 MTR_2g012630 25.592 211 129 8 194 404 31 213 8.14e-11 64.7
MS.gene028296.t1 MTR_2g102277 24.631 203 131 5 194 385 30 221 2.63e-12 69.3
MS.gene028296.t1 MTR_2g102277 24.631 203 131 5 194 385 30 221 2.65e-12 69.3
MS.gene028296.t1 MTR_6g004040 25.000 192 122 7 221 411 10 180 6.72e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028296.t1 AT5G58230 88.942 416 46 0 1 416 1 416 0.0 776
MS.gene028296.t1 AT2G16780 53.555 422 164 8 2 414 5 403 3.16e-152 437
MS.gene028296.t1 AT4G35050 52.439 410 175 6 6 409 4 399 1.38e-147 426
MS.gene028296.t1 AT2G19520 32.353 442 240 13 17 415 64 489 1.49e-62 210
MS.gene028296.t1 AT4G29730 29.412 442 251 12 13 415 50 469 1.28e-55 191
MS.gene028296.t1 AT4G29730 29.008 393 225 11 13 373 50 420 6.63e-45 162
MS.gene028296.t1 AT4G29730 29.008 393 225 11 13 373 50 420 6.63e-45 162
MS.gene028296.t1 AT2G19540 29.375 320 187 9 119 408 153 463 6.75e-31 124
MS.gene028296.t1 AT1G29260 25.957 235 152 4 169 403 97 309 3.95e-17 82.4
MS.gene028296.t1 AT1G29260 28.000 175 111 2 230 404 63 222 6.26e-14 72.8
MS.gene028296.t1 AT1G52360 25.616 203 129 5 194 385 30 221 8.61e-13 70.9
MS.gene028296.t1 AT1G52360 25.616 203 129 5 194 385 30 221 8.61e-13 70.9
MS.gene028296.t1 AT1G52360 25.616 203 129 5 194 385 30 221 9.55e-13 70.9
MS.gene028296.t1 AT2G32950 25.941 239 157 8 114 347 241 464 1.20e-12 70.1
MS.gene028296.t1 AT1G11160 28.431 204 125 9 194 389 31 221 1.22e-12 70.5
MS.gene028296.t1 AT1G52360 25.616 203 129 5 194 385 74 265 1.34e-12 70.5
MS.gene028296.t1 AT2G32950 25.941 239 157 8 114 347 354 577 1.45e-12 70.1
MS.gene028296.t1 AT1G11160 26.000 250 134 8 184 389 21 263 1.59e-12 70.1
MS.gene028296.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.66e-12 70.1
MS.gene028296.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.70e-12 70.1
MS.gene028296.t1 AT3G63460 26.923 182 117 6 174 346 118 292 1.77e-12 70.1
MS.gene028296.t1 AT1G11160 26.000 250 134 8 184 389 21 263 2.01e-12 69.7
MS.gene028296.t1 AT1G11160 26.000 250 134 8 184 389 21 263 2.02e-12 69.7
MS.gene028296.t1 AT3G49660 29.224 219 138 9 163 372 6 216 3.99e-12 67.4
MS.gene028296.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.74e-12 68.6
MS.gene028296.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.74e-12 68.6
MS.gene028296.t1 AT5G08390 25.000 192 122 7 221 411 10 180 4.79e-12 68.6
MS.gene028296.t1 AT5G23430 25.543 184 116 6 221 404 10 172 4.83e-12 68.6
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.13e-12 68.6
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.54e-12 68.2
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.66e-12 68.2
MS.gene028296.t1 AT3G15980 25.123 203 130 5 194 385 30 221 5.84e-12 68.2
MS.gene028296.t1 AT5G13480 24.286 280 165 12 127 402 136 372 3.57e-11 65.5
MS.gene028296.t1 AT5G13480 24.286 280 165 12 127 402 113 349 3.58e-11 65.5
MS.gene028296.t1 AT5G13480 24.286 280 165 12 127 402 125 361 3.60e-11 65.5
MS.gene028296.t1 AT5G13480 24.286 280 165 12 127 402 113 349 3.75e-11 65.5
MS.gene028296.t1 AT1G79990 24.631 203 131 5 194 385 30 221 4.48e-11 65.5
MS.gene028296.t1 AT1G79990 24.631 203 131 5 194 385 30 221 4.83e-11 65.5
MS.gene028296.t1 AT2G43770 26.160 237 143 10 170 404 45 251 5.45e-11 63.9

Find 97 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAGACAGTCTCATTCTT+TGG 0.230384 4.2:-17375154 None:intergenic
TTGAGCGAGCATGAGGTAAT+TGG 0.234646 4.2:-17372970 None:intergenic
ATTTGTTTGTGGGATATTAA+TGG 0.257426 4.2:+17373347 MS.gene028296:CDS
CGTCCTGAAGTTGGAGGGTT+TGG 0.303486 4.2:+17373047 MS.gene028296:CDS
ATGATCAGTATTTGCTTGTA+TGG 0.322224 4.2:+17373564 MS.gene028296:CDS
CCATCAATTGGAGGCTTAGA+AGG 0.322579 4.2:-17373215 None:intergenic
GGGGCCTGTGCTGACTGTTC+TGG 0.324266 4.2:-17376174 None:intergenic
CCAAGACAGTCTCATTCTTT+GGG 0.329902 4.2:-17375153 None:intergenic
CTTTCAATCCCTTCAATGAA+TGG 0.340735 4.2:+17374924 MS.gene028296:CDS
CCTTCTAAGCCTCCAATTGA+TGG 0.346065 4.2:+17373215 MS.gene028296:CDS
TTGAGGCATGAGTATTTGTT+TGG 0.347301 4.2:+17373530 MS.gene028296:CDS
GCGTCAAGAGACTTATTCTT+AGG 0.347791 4.2:-17373374 None:intergenic
TGTCCTCTTAACCTCAAATC+AGG 0.355268 4.2:-17373248 None:intergenic
AAGACAACATACTTCAAATA+TGG 0.358936 4.2:+17376112 MS.gene028296:CDS
CATGGAACCCATGTGAAGAT+TGG 0.363420 4.2:+17376070 MS.gene028296:CDS
GGAGGGTTTGGTTGTGCAAA+TGG 0.367444 4.2:+17373059 MS.gene028296:CDS
TCAACGAAGAATACAAAATC+TGG 0.373066 4.2:+17372790 MS.gene028296:CDS
CCGGCGGGTTCAGTGCGATC+TGG 0.376914 4.2:-17372891 None:intergenic
GTCTTGGCTTCTTGTTGTCT+TGG 0.378706 4.2:+17375169 MS.gene028296:CDS
AAACAAGGTCATTTGCTTAG+TGG 0.381789 4.2:+17373308 MS.gene028296:CDS
AGTATTTGTTTGGTTCTGTT+GGG 0.383674 4.2:+17373540 MS.gene028296:CDS
TGGCTTCTTGTTGTCTTGGT+AGG 0.395080 4.2:+17375173 MS.gene028296:CDS
CAACCAAACCCTCCAACTTC+AGG 0.396221 4.2:-17373050 None:intergenic
AACCCTGATTTGAGGTTAAG+AGG 0.408019 4.2:+17373245 MS.gene028296:CDS
GGGTTACAACTTCCATCAAT+TGG 0.425575 4.2:-17373227 None:intergenic
GCAAAATATCTGACTTCTCA+TGG 0.436410 4.2:+17376052 MS.gene028296:CDS
GAGTATTTGTTTGGTTCTGT+TGG 0.442494 4.2:+17373539 MS.gene028296:CDS
TTGGACGGAGTAGTCTTTGC+CGG 0.451704 4.2:-17372910 None:intergenic
TGAGCGAGCATGAGGTAATT+GGG 0.457887 4.2:-17372969 None:intergenic
TTGTTTGTTTAGGTTCATGA+AGG 0.461339 4.2:+17373482 MS.gene028296:intron
CTGAAGGGTATGGTTTGTCT+TGG 0.461708 4.2:+17373276 MS.gene028296:CDS
TTGTGGGATCTGCGCAAGAT+TGG 0.469154 4.2:+17374983 MS.gene028296:CDS
TGAGCAATGCAAGACTGAAC+AGG 0.469797 4.2:-17373614 None:intergenic
TCTTTGGGTTCCAGCCAACC+TGG 0.471969 4.2:-17375138 None:intergenic
GGACCATCTTCAGCATCCTC+TGG 0.473998 4.2:-17375994 None:intergenic
GAGGGTTTGGTTGTGCAAAT+GGG 0.479606 4.2:+17373060 MS.gene028296:CDS
TGATGCTCAGATTTGTTTGT+GGG 0.482057 4.2:+17373337 MS.gene028296:CDS
CGGACAAAACAGTGAAATTG+TGG 0.487959 4.2:+17374966 MS.gene028296:CDS
GATGACGATCGTCCTGAAGT+TGG 0.499636 4.2:+17373038 MS.gene028296:CDS
AAGATGTGGCTTGGCATTTG+AGG 0.499952 4.2:+17373513 MS.gene028296:CDS
ACGGAGTAGTCTTTGCCGGC+GGG 0.500148 4.2:-17372906 None:intergenic
AGCAACTATCCATTCATTGA+AGG 0.510302 4.2:-17374933 None:intergenic
ATGATGCTCAGATTTGTTTG+TGG 0.513746 4.2:+17373336 MS.gene028296:CDS
AATGAATGGATAGTTGCTAC+TGG 0.517233 4.2:+17374938 MS.gene028296:CDS
TGATGGTGTGGGATCTTAGC+AGG 0.518950 4.2:+17375200 MS.gene028296:CDS
TGATCAGTATTTGCTTGTAT+GGG 0.519134 4.2:+17373565 MS.gene028296:CDS
ATGGAACCCATGTGAAGATT+GGG 0.525962 4.2:+17376071 MS.gene028296:CDS
TTACAACTTCCATCAATTGG+AGG 0.527832 4.2:-17373224 None:intergenic
GATAGTTGCTACTGGTTCTA+CGG 0.527969 4.2:+17374946 MS.gene028296:CDS
CCCAAAGAATGAGACTGTCT+TGG 0.529129 4.2:+17375153 MS.gene028296:CDS
TTGTCTTGGTAGGAGACTGA+TGG 0.532965 4.2:+17375183 MS.gene028296:CDS
CTGAGTTCAATTACATTAAG+GGG 0.543271 4.2:-17376193 None:intergenic
GCAACTATCCATTCATTGAA+GGG 0.546007 4.2:-17374932 None:intergenic
TCACCAGAGGATGCTGAAGA+TGG 0.548104 4.2:+17375991 MS.gene028296:CDS
GGACAAAACAGTGAAATTGT+GGG 0.548577 4.2:+17374967 MS.gene028296:CDS
GGCCATCTCTCACCGTCGAA+TGG 0.548676 4.2:+17372865 MS.gene028296:CDS
TACTAAGACGGTTAGTGCTG+AGG 0.555717 4.2:+17373166 MS.gene028296:CDS
GGACATAATACTGAAGGGTA+TGG 0.557925 4.2:+17373266 MS.gene028296:CDS
AGATTGGGTTGTTGCTAGTG+TGG 0.562356 4.2:+17376086 MS.gene028296:CDS
ATTCAACAGATTAATCATGA+TGG 0.562715 4.2:+17373095 MS.gene028296:CDS
TCATCACTCATGCTCTCGAA+TGG 0.565461 4.2:+17372844 MS.gene028296:CDS
GTTTGGTTGTGCAAATGGGA+AGG 0.567073 4.2:+17373064 MS.gene028296:CDS
GACGATCGTCCTGAAGTTGG+AGG 0.569228 4.2:+17373041 MS.gene028296:CDS
GTATTTGTTTGGTTCTGTTG+GGG 0.571264 4.2:+17373541 MS.gene028296:CDS
GTCCTCTTAACCTCAAATCA+GGG 0.573483 4.2:-17373247 None:intergenic
GAAGTTGTAACCCTGATTTG+AGG 0.574752 4.2:+17373237 MS.gene028296:CDS
TTAAGAGGACATAATACTGA+AGG 0.575905 4.2:+17373260 MS.gene028296:CDS
AGCCATTCGACGGTGAGAGA+TGG 0.578728 4.2:-17372867 None:intergenic
TTGGTAGGAGACTGATGGTG+TGG 0.580867 4.2:+17375188 MS.gene028296:CDS
TTAGGTTCATGAAGGTGTTG+TGG 0.588038 4.2:+17373490 MS.gene028296:intron
CTGGCATATCATCTTCGTCA+TGG 0.595465 4.2:-17376155 None:intergenic
TTTCGGAAGTGTGGGTCCCG+AGG 0.597109 4.2:-17372941 None:intergenic
CCAGATCGCACTGAACCCGC+CGG 0.598540 4.2:+17372891 MS.gene028296:CDS
TCTTGGAGTAAGTTTAAACA+AGG 0.603010 4.2:+17373293 MS.gene028296:CDS
TGGTAGGAGACTGATGGTGT+GGG 0.611927 4.2:+17375189 MS.gene028296:CDS
GATGACGAGATCGTAGAGGA+AGG 0.612226 4.2:-17372826 None:intergenic
GACGGAGTAGTCTTTGCCGG+CGG 0.613969 4.2:-17372907 None:intergenic
ATGTTACTTATGGCAATCAA+AGG 0.614738 4.2:-17375020 None:intergenic
ACAGATTAATCATGATGGTG+AGG 0.616848 4.2:+17373100 MS.gene028296:CDS
GCAACAACCCAATCTTCACA+TGG 0.617675 4.2:-17376078 None:intergenic
CATACTTCAAATATGGCAGA+TGG 0.618787 4.2:+17376119 MS.gene028296:CDS
ACGATCGTCCTGAAGTTGGA+GGG 0.619003 4.2:+17373042 MS.gene028296:CDS
TGAAGGTGTTGTGGAAGATG+TGG 0.623313 4.2:+17373499 MS.gene028296:CDS
GCAATCACAAAACTATTCTG+AGG 0.629163 4.2:-17373143 None:intergenic
GTTGAACTTGAGCGAGCATG+AGG 0.633102 4.2:-17372977 None:intergenic
ATGACGAGATCGTAGAGGAA+GGG 0.633340 4.2:-17372825 None:intergenic
TATGCCAGAACAGTCAGCAC+AGG 0.635935 4.2:+17376170 MS.gene028296:CDS
GCGATCTGGAAGCCATTCGA+CGG 0.637412 4.2:-17372877 None:intergenic
AAAGAAGACGAAGAAATGAG+AGG 0.647955 4.2:+17372747 MS.gene028296:CDS
TAAGAGGACATAATACTGAA+GGG 0.649086 4.2:+17373261 MS.gene028296:CDS
GTGTTGTGGAAGATGTGGCT+TGG 0.652239 4.2:+17373504 MS.gene028296:CDS
CGACGAAGAGCAGTCACCAG+AGG 0.657267 4.2:+17375978 MS.gene028296:CDS
TTGCATTGCTCATTCAAGCG+AGG 0.660555 4.2:+17373625 MS.gene028296:CDS
TGAACAGGCTTAGTAACAGA+CGG 0.667956 4.2:-17373599 None:intergenic
ATGGTGAGGTTAATAGAGCG+AGG 0.684540 4.2:+17373114 MS.gene028296:CDS
GAGTGATGACGAGATCGTAG+AGG 0.687500 4.2:-17372830 None:intergenic
CAACAACCCAATCTTCACAT+GGG 0.694803 4.2:-17376077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATAGAAAAATCTA+CGG - chr4.2:17375049-17375068 None:intergenic 10.0%
!! ATTTGTTTGTATATAATATA+TGG + chr4.2:17375645-17375664 MS.gene028296:intron 10.0%
!! TTAATATATGAATCAAATAA+TGG - chr4.2:17375898-17375917 None:intergenic 10.0%
!! TAAATAATAAACTTAAAAGC+CGG + chr4.2:17375333-17375352 MS.gene028296:intron 15.0%
!!! TAGTTTTTTATGCTTTTTAT+AGG - chr4.2:17374295-17374314 None:intergenic 15.0%
!!! TTTTACATTTGGTTTTTTTA+AGG + chr4.2:17373701-17373720 MS.gene028296:intron 15.0%
!!! TTTTATCTATGTTTAAATCT+AGG + chr4.2:17373655-17373674 MS.gene028296:intron 15.0%
!!! TTTTCTTTATATAATGACAT+TGG + chr4.2:17374878-17374897 MS.gene028296:intron 15.0%
!! AAATGTTAGAATTTAGTTGT+TGG + chr4.2:17375724-17375743 MS.gene028296:intron 20.0%
!! AACAACTAAATTCTAACATT+TGG - chr4.2:17375725-17375744 None:intergenic 20.0%
!! AACTTAATATAACTCAAGAA+AGG - chr4.2:17375469-17375488 None:intergenic 20.0%
!! ATATGAAAATAAATTAAGCG+TGG + chr4.2:17374057-17374076 MS.gene028296:intron 20.0%
!! TGATAATTGAAAACTAAACA+CGG + chr4.2:17374588-17374607 MS.gene028296:intron 20.0%
!! TTAAAAAATTGACAATTGAG+AGG - chr4.2:17375387-17375406 None:intergenic 20.0%
!! TTGTATATAATATATGGCTT+CGG + chr4.2:17375651-17375670 MS.gene028296:intron 20.0%
!!! AAGGAAGTATAATTAGTTTA+GGG + chr4.2:17373720-17373739 MS.gene028296:intron 20.0%
!!! ATTTTAACTTGAAACATTTG+AGG - chr4.2:17375828-17375847 None:intergenic 20.0%
!!! CGCTTAATTTATTTTCATAT+TGG - chr4.2:17374057-17374076 None:intergenic 20.0%
!!! TAAGGAAGTATAATTAGTTT+AGG + chr4.2:17373719-17373738 MS.gene028296:intron 20.0%
!!! TAATATCACTATGTTTTGAT+GGG - chr4.2:17374522-17374541 None:intergenic 20.0%
!!! TATTTTTCGTTGTTTTTGTT+GGG + chr4.2:17373436-17373455 MS.gene028296:intron 20.0%
!!! TTATAAGCTCTTTTTACATT+TGG + chr4.2:17373690-17373709 MS.gene028296:intron 20.0%
!!! TTATTTTTCGTTGTTTTTGT+TGG + chr4.2:17373435-17373454 MS.gene028296:intron 20.0%
!!! TTTTAACTTGAAACATTTGA+GGG - chr4.2:17375827-17375846 None:intergenic 20.0%
! AAATCTTGAGATTAATGAGT+TGG + chr4.2:17374323-17374342 MS.gene028296:intron 25.0%
! AAGACAACATACTTCAAATA+TGG + chr4.2:17376112-17376131 MS.gene028296:CDS 25.0%
! ATTCAACAGATTAATCATGA+TGG + chr4.2:17373095-17373114 MS.gene028296:CDS 25.0%
! ATTTGTTTGTGGGATATTAA+TGG + chr4.2:17373347-17373366 MS.gene028296:CDS 25.0%
! CAAAAACAACGAAAAATAAG+TGG - chr4.2:17373434-17373453 None:intergenic 25.0%
! TTAATCTAGACAATTGTTTG+TGG + chr4.2:17373803-17373822 MS.gene028296:intron 25.0%
!! AGTATAATTAGTTTAGGGTT+TGG + chr4.2:17373725-17373744 MS.gene028296:intron 25.0%
!! TAATGACATTGGATTTTGTT+AGG + chr4.2:17374889-17374908 MS.gene028296:intron 25.0%
!! TGAAAGTAACAACTATTTTG+TGG + chr4.2:17373828-17373847 MS.gene028296:intron 25.0%
!! TGAGTTGGATAGAAAAATAT+TGG + chr4.2:17374338-17374357 MS.gene028296:intron 25.0%
!!! CTAATATCACTATGTTTTGA+TGG - chr4.2:17374523-17374542 None:intergenic 25.0%
!!! TGTCAATTTTTTAACCTCAT+GGG + chr4.2:17375393-17375412 MS.gene028296:intron 25.0%
!!! TTGATCTAGATTGTTGTTTT+CGG + chr4.2:17375095-17375114 MS.gene028296:intron 25.0%
!!! TTGTCAATTTTTTAACCTCA+TGG + chr4.2:17375392-17375411 MS.gene028296:intron 25.0%
AAAACTCGGTAAACATTTCA+GGG - chr4.2:17375284-17375303 None:intergenic 30.0%
AAGTTCTGTAATGAGACTAA+TGG + chr4.2:17375484-17375503 MS.gene028296:intron 30.0%
AATCACAACATACCAAAACT+CGG - chr4.2:17375298-17375317 None:intergenic 30.0%
ACCTATAGTAGAAAAGATAG+TGG + chr4.2:17374167-17374186 MS.gene028296:intron 30.0%
ACTTAATTCGCTAAAAAGAG+TGG - chr4.2:17375431-17375450 None:intergenic 30.0%
ATGATCAGTATTTGCTTGTA+TGG + chr4.2:17373564-17373583 MS.gene028296:CDS 30.0%
CAAGTTAAAATGTCTATCGT+GGG + chr4.2:17375837-17375856 MS.gene028296:intron 30.0%
CCATGAATAAAAAGCAATTC+TGG - chr4.2:17376021-17376040 None:intergenic 30.0%
TAAGAGAAACTTTAATCCAG+TGG - chr4.2:17375364-17375383 None:intergenic 30.0%
TAAGAGGACATAATACTGAA+GGG + chr4.2:17373261-17373280 MS.gene028296:CDS 30.0%
TAATGAGACTAATGGAGTAA+TGG + chr4.2:17375492-17375511 MS.gene028296:intron 30.0%
TACACTAAAAAGTCCAGATA+TGG - chr4.2:17375247-17375266 None:intergenic 30.0%
TCAACGAAGAATACAAAATC+TGG + chr4.2:17372790-17372809 MS.gene028296:CDS 30.0%
TCAAGTTAAAATGTCTATCG+TGG + chr4.2:17375836-17375855 MS.gene028296:intron 30.0%
TCTTGGAGTAAGTTTAAACA+AGG + chr4.2:17373293-17373312 MS.gene028296:CDS 30.0%
TGAAAATAAATTAAGCGTGG+CGG + chr4.2:17374060-17374079 MS.gene028296:intron 30.0%
TGAATAAAAAGCAATTCTGG+TGG - chr4.2:17376018-17376037 None:intergenic 30.0%
TGATCAGTATTTGCTTGTAT+GGG + chr4.2:17373565-17373584 MS.gene028296:CDS 30.0%
TTAAGAGGACATAATACTGA+AGG + chr4.2:17373260-17373279 MS.gene028296:CDS 30.0%
TTGAAAATCTGAGTAAAGAC+AGG - chr4.2:17374736-17374755 None:intergenic 30.0%
TTGTGTTGAAAGACTTCATT+CGG + chr4.2:17374559-17374578 MS.gene028296:intron 30.0%
! ATGTTACTTATGGCAATCAA+AGG - chr4.2:17375023-17375042 None:intergenic 30.0%
! ATTTTGTTAGGTTAACTGCT+TGG + chr4.2:17374901-17374920 MS.gene028296:intron 30.0%
! TCCACTATCTTTTCTACTAT+AGG - chr4.2:17374171-17374190 None:intergenic 30.0%
! TGTTGTTCACTCTTTTATGT+AGG + chr4.2:17375953-17375972 MS.gene028296:intron 30.0%
! TTGTTTGTTTAGGTTCATGA+AGG + chr4.2:17373482-17373501 MS.gene028296:intron 30.0%
! TTTTGTGATTGCTACTAAGA+CGG + chr4.2:17373154-17373173 MS.gene028296:CDS 30.0%
!! ACTCTTTTTAGCGAATTAAG+TGG + chr4.2:17375430-17375449 MS.gene028296:intron 30.0%
!! AGTATTTGTTTGGTTCTGTT+GGG + chr4.2:17373540-17373559 MS.gene028296:CDS 30.0%
!! AGTTGATGGGAAAATTTCAT+TGG + chr4.2:17374018-17374037 MS.gene028296:intron 30.0%
!! TGTGTGGTTTTTGTTTGTTT+AGG + chr4.2:17373472-17373491 MS.gene028296:intron 30.0%
!!! ATTGTTGTTTTCGGGTTAAT+AGG + chr4.2:17375104-17375123 MS.gene028296:intron 30.0%
!!! CCAGAATTGCTTTTTATTCA+TGG + chr4.2:17376018-17376037 MS.gene028296:CDS 30.0%
!!! GAATTGCTTTTTATTCATGG+TGG + chr4.2:17376021-17376040 MS.gene028296:CDS 30.0%
!!! TGATCTAGATTGTTGTTTTC+GGG + chr4.2:17375096-17375115 MS.gene028296:intron 30.0%
!!! TTGTTGTTTTCGGGTTAATA+GGG + chr4.2:17375105-17375124 MS.gene028296:intron 30.0%
AAACAAGGTCATTTGCTTAG+TGG + chr4.2:17373308-17373327 MS.gene028296:CDS 35.0%
AAAGAAGACGAAGAAATGAG+AGG + chr4.2:17372747-17372766 MS.gene028296:CDS 35.0%
AAAGTCGAATTAGAGCACAA+CGG - chr4.2:17374785-17374804 None:intergenic 35.0%
AACTTGAAACATTTGAGGGT+TGG - chr4.2:17375823-17375842 None:intergenic 35.0%
AATGAATGGATAGTTGCTAC+TGG + chr4.2:17374938-17374957 MS.gene028296:CDS 35.0%
ACATCAAAGTCCAAAGATCA+GGG - chr4.2:17375573-17375592 None:intergenic 35.0%
AGAAACTTTAATCCAGTGGA+AGG - chr4.2:17375360-17375379 None:intergenic 35.0%
AGCAACTATCCATTCATTGA+AGG - chr4.2:17374936-17374955 None:intergenic 35.0%
ATGTTAAGTGGACAGATACA+GGG + chr4.2:17373912-17373931 MS.gene028296:intron 35.0%
CAAAACTCGGTAAACATTTC+AGG - chr4.2:17375285-17375304 None:intergenic 35.0%
CAACACAATGTTGAACCTTT+CGG - chr4.2:17374547-17374566 None:intergenic 35.0%
CATACTTCAAATATGGCAGA+TGG + chr4.2:17376119-17376138 MS.gene028296:CDS 35.0%
CATAGTGATATTAGACCGAA+AGG + chr4.2:17374529-17374548 MS.gene028296:intron 35.0%
CATCGTCAATATTTGAGAAC+TGG + chr4.2:17374631-17374650 MS.gene028296:intron 35.0%
CGCATCGAATAAAATACTTG+AGG - chr4.2:17373985-17374004 None:intergenic 35.0%
CTTTCAATCCCTTCAATGAA+TGG + chr4.2:17374924-17374943 MS.gene028296:CDS 35.0%
GAATTACTAGAGGTAGAAGA+AGG + chr4.2:17374269-17374288 MS.gene028296:intron 35.0%
GCAAAATATCTGACTTCTCA+TGG + chr4.2:17376052-17376071 MS.gene028296:CDS 35.0%
GCAACTATCCATTCATTGAA+GGG - chr4.2:17374935-17374954 None:intergenic 35.0%
GCAATCACAAAACTATTCTG+AGG - chr4.2:17373146-17373165 None:intergenic 35.0%
GGACAAAACAGTGAAATTGT+GGG + chr4.2:17374967-17374986 MS.gene028296:CDS 35.0%
GTGGCTATATTTCACATATC+TGG + chr4.2:17374680-17374699 MS.gene028296:intron 35.0%
TACACTAGACAAGATAGGAT+TGG + chr4.2:17374111-17374130 MS.gene028296:intron 35.0%
TACATCAAAGTCCAAAGATC+AGG - chr4.2:17375574-17375593 None:intergenic 35.0%
TGAATCTGTCAAAATGAGCA+TGG + chr4.2:17373877-17373896 MS.gene028296:intron 35.0%
TGTGTTGAAAGACTTCATTC+GGG + chr4.2:17374560-17374579 MS.gene028296:intron 35.0%
TTACAACTTCCATCAATTGG+AGG - chr4.2:17373227-17373246 None:intergenic 35.0%
TTGAGGCATGAGTATTTGTT+TGG + chr4.2:17373530-17373549 MS.gene028296:CDS 35.0%
! AATCAACAGAAGCATGCAAT+TGG - chr4.2:17375624-17375643 None:intergenic 35.0%
! ACAGATTAATCATGATGGTG+AGG + chr4.2:17373100-17373119 MS.gene028296:CDS 35.0%
! ATGATGCTCAGATTTGTTTG+TGG + chr4.2:17373336-17373355 MS.gene028296:CDS 35.0%
! CTGAAATGTTTACCGAGTTT+TGG + chr4.2:17375283-17375302 MS.gene028296:intron 35.0%
! TATGATGTGCTGTTGTAAGA+GGG + chr4.2:17374383-17374402 MS.gene028296:intron 35.0%
! TCTACGGAGAATGTTACTTA+TGG - chr4.2:17375033-17375052 None:intergenic 35.0%
! TGACGCTCATCAGATTTTTA+AGG + chr4.2:17373391-17373410 MS.gene028296:CDS 35.0%
! TGATGCTCAGATTTGTTTGT+GGG + chr4.2:17373337-17373356 MS.gene028296:CDS 35.0%
! TTATGATGTGCTGTTGTAAG+AGG + chr4.2:17374382-17374401 MS.gene028296:intron 35.0%
!! AAAGTACTGCTCAAGTTGAT+GGG + chr4.2:17374005-17374024 MS.gene028296:intron 35.0%
!! AATGAAAGCATCACCATATC+TGG + chr4.2:17375231-17375250 MS.gene028296:intron 35.0%
!! ACTGACTTTTGTTGTATGTG+GGG + chr4.2:17375596-17375615 MS.gene028296:intron 35.0%
!! GAGTATTTGTTTGGTTCTGT+TGG + chr4.2:17373539-17373558 MS.gene028296:CDS 35.0%
!! GTATTTGTTTGGTTCTGTTG+GGG + chr4.2:17373541-17373560 MS.gene028296:CDS 35.0%
!! TAGAAAAGATAGTGGAAAGC+AGG + chr4.2:17374175-17374194 MS.gene028296:intron 35.0%
!!! ATCACTATGTTTTGATGGGT+TGG - chr4.2:17374518-17374537 None:intergenic 35.0%
!!! CACTGACTTTTGTTGTATGT+GGG + chr4.2:17375595-17375614 MS.gene028296:intron 35.0%
!!! TCACTATGTTTTGATGGGTT+GGG - chr4.2:17374517-17374536 None:intergenic 35.0%
AAACACGCAACATTCAAGCT+GGG + chr4.2:17373940-17373959 MS.gene028296:intron 40.0%
AAGGACAATAGATCAGATGG+AGG + chr4.2:17374245-17374264 MS.gene028296:intron 40.0%
ACAACATTTGAGAGAGAGCT+GGG + chr4.2:17374139-17374158 MS.gene028296:intron 40.0%
AGATGGAGGAGAATTACTAG+AGG + chr4.2:17374259-17374278 MS.gene028296:intron 40.0%
ATGGAACCCATGTGAAGATT+GGG + chr4.2:17376071-17376090 MS.gene028296:CDS 40.0%
CAACAACCCAATCTTCACAT+GGG - chr4.2:17376080-17376099 None:intergenic 40.0%
CATCAAAGTCCAAAGATCAG+GGG - chr4.2:17375572-17375591 None:intergenic 40.0%
CATGTTAAGTGGACAGATAC+AGG + chr4.2:17373911-17373930 MS.gene028296:intron 40.0%
CCAAGACAGTCTCATTCTTT+GGG - chr4.2:17375156-17375175 None:intergenic 40.0%
CGGACAAAACAGTGAAATTG+TGG + chr4.2:17374966-17374985 MS.gene028296:CDS 40.0%
CGTAAGGACAATAGATCAGA+TGG + chr4.2:17374242-17374261 MS.gene028296:intron 40.0%
CTGATCTATTGTCCTTACGA+CGG - chr4.2:17374241-17374260 None:intergenic 40.0%
CTGTATCTGTCCACTTAACA+TGG - chr4.2:17373913-17373932 None:intergenic 40.0%
GACAGGAAATTCTATCAGCA+AGG - chr4.2:17374719-17374738 None:intergenic 40.0%
GCGTCAAGAGACTTATTCTT+AGG - chr4.2:17373377-17373396 None:intergenic 40.0%
GGAAATTAGTGTGAGTGTGA+GGG + chr4.2:17373849-17373868 MS.gene028296:intron 40.0%
GGAACTTTAATTCACCCATG+AGG - chr4.2:17375410-17375429 None:intergenic 40.0%
GGACATAATACTGAAGGGTA+TGG + chr4.2:17373266-17373285 MS.gene028296:CDS 40.0%
GGGTTACAACTTCCATCAAT+TGG - chr4.2:17373230-17373249 None:intergenic 40.0%
GTCCTCTTAACCTCAAATCA+GGG - chr4.2:17373250-17373269 None:intergenic 40.0%
GTGTTGAAAGACTTCATTCG+GGG + chr4.2:17374561-17374580 MS.gene028296:intron 40.0%
TAAACACGCAACATTCAAGC+TGG + chr4.2:17373939-17373958 MS.gene028296:intron 40.0%
TGAACAGGCTTAGTAACAGA+CGG - chr4.2:17373602-17373621 None:intergenic 40.0%
TGGAAATTAGTGTGAGTGTG+AGG + chr4.2:17373848-17373867 MS.gene028296:intron 40.0%
TGGGTGGTTGAAATGGAATA+GGG + chr4.2:17373959-17373978 MS.gene028296:intron 40.0%
TGTCAAAATGAGCATGGCAT+GGG + chr4.2:17373883-17373902 MS.gene028296:intron 40.0%
TGTCCTCTTAACCTCAAATC+AGG - chr4.2:17373251-17373270 None:intergenic 40.0%
TGTGGTACACTAGACAAGAT+AGG + chr4.2:17374106-17374125 MS.gene028296:intron 40.0%
! AACCCTGATTTGAGGTTAAG+AGG + chr4.2:17373245-17373264 MS.gene028296:CDS 40.0%
! GAAGTTGTAACCCTGATTTG+AGG + chr4.2:17373237-17373256 MS.gene028296:CDS 40.0%
! GAGGTAATTGGGTTCGTTTT+CGG - chr4.2:17372961-17372980 None:intergenic 40.0%
!! GAAAGTACTGCTCAAGTTGA+TGG + chr4.2:17374004-17374023 MS.gene028296:intron 40.0%
!! GATAGTTGCTACTGGTTCTA+CGG + chr4.2:17374946-17374965 MS.gene028296:CDS 40.0%
!! TTAGGTTCATGAAGGTGTTG+TGG + chr4.2:17373490-17373509 MS.gene028296:intron 40.0%
!!! CGTTGTTTTTGTTGGGTTGT+TGG + chr4.2:17373443-17373462 MS.gene028296:intron 40.0%
!!! GCACTGACTTTTGTTGTATG+TGG + chr4.2:17375594-17375613 MS.gene028296:intron 40.0%
!!! TTGTTTTCGGGTTAATAGGG+AGG + chr4.2:17375108-17375127 MS.gene028296:intron 40.0%
AAAGCAGGCTTAGGTGGTTT+GGG + chr4.2:17374190-17374209 MS.gene028296:intron 45.0%
ATGACGAGATCGTAGAGGAA+GGG - chr4.2:17372828-17372847 None:intergenic 45.0%
ATGGTGAGGTTAATAGAGCG+AGG + chr4.2:17373114-17373133 MS.gene028296:CDS 45.0%
CAACATTTGAGAGAGAGCTG+GGG + chr4.2:17374140-17374159 MS.gene028296:intron 45.0%
CATGGAACCCATGTGAAGAT+TGG + chr4.2:17376070-17376089 MS.gene028296:CDS 45.0%
CATGGGGATACCATGTTAAG+TGG + chr4.2:17373900-17373919 MS.gene028296:intron 45.0%
CCATCAATTGGAGGCTTAGA+AGG - chr4.2:17373218-17373237 None:intergenic 45.0%
CCCAAAGAATGAGACTGTCT+TGG + chr4.2:17375153-17375172 MS.gene028296:CDS 45.0%
CCTTCTAAGCCTCCAATTGA+TGG + chr4.2:17373215-17373234 MS.gene028296:CDS 45.0%
CTGGCATATCATCTTCGTCA+TGG - chr4.2:17376158-17376177 None:intergenic 45.0%
CTGGGTGGTTGAAATGGAAT+AGG + chr4.2:17373958-17373977 MS.gene028296:intron 45.0%
CTGTCAAAATGAGCATGGCA+TGG + chr4.2:17373882-17373901 MS.gene028296:intron 45.0%
CTTTAATCCAGTGGAAGGAC+CGG - chr4.2:17375355-17375374 None:intergenic 45.0%
GACAACATTTGAGAGAGAGC+TGG + chr4.2:17374138-17374157 MS.gene028296:intron 45.0%
GACATGTGTATTCCGTCGTA+AGG + chr4.2:17374226-17374245 MS.gene028296:intron 45.0%
GCAACAACCCAATCTTCACA+TGG - chr4.2:17376081-17376100 None:intergenic 45.0%
GCCAAGACAGTCTCATTCTT+TGG - chr4.2:17375157-17375176 None:intergenic 45.0%
GTATTGGGTTCAAACACGGA+CGG - chr4.2:17375766-17375785 None:intergenic 45.0%
GTCAAAATGAGCATGGCATG+GGG + chr4.2:17373884-17373903 MS.gene028296:intron 45.0%
GTTTGGTTGTGCAAATGGGA+AGG + chr4.2:17373064-17373083 MS.gene028296:CDS 45.0%
TACTAAGACGGTTAGTGCTG+AGG + chr4.2:17373166-17373185 MS.gene028296:CDS 45.0%
TCATCACTCATGCTCTCGAA+TGG + chr4.2:17372844-17372863 MS.gene028296:CDS 45.0%
TCCGTCCAAAAACTCATCCT+CGG + chr4.2:17372924-17372943 MS.gene028296:CDS 45.0%
TGAAAGACTTCATTCGGGGT+GGG + chr4.2:17374565-17374584 MS.gene028296:intron 45.0%
TGAGCAATGCAAGACTGAAC+AGG - chr4.2:17373617-17373636 None:intergenic 45.0%
TGAGCGAGCATGAGGTAATT+GGG - chr4.2:17372972-17372991 None:intergenic 45.0%
TTAGTGTGAGTGTGAGGGAT+TGG + chr4.2:17373854-17373873 MS.gene028296:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr4.2:17373952-17373971 MS.gene028296:intron 45.0%
TTGAAAGACTTCATTCGGGG+TGG + chr4.2:17374564-17374583 MS.gene028296:intron 45.0%
TTGAGCGAGCATGAGGTAAT+TGG - chr4.2:17372973-17372992 None:intergenic 45.0%
TTGCATTGCTCATTCAAGCG+AGG + chr4.2:17373625-17373644 MS.gene028296:CDS 45.0%
TTGTCTTGGTAGGAGACTGA+TGG + chr4.2:17375183-17375202 MS.gene028296:CDS 45.0%
! AAATTAAGCGTGGCGGAGAT+AGG + chr4.2:17374067-17374086 MS.gene028296:intron 45.0%
! AAGATGTGGCTTGGCATTTG+AGG + chr4.2:17373513-17373532 MS.gene028296:CDS 45.0%
! AATTAAGCGTGGCGGAGATA+GGG + chr4.2:17374068-17374087 MS.gene028296:intron 45.0%
! AGATTGGGTTGTTGCTAGTG+TGG + chr4.2:17376086-17376105 MS.gene028296:CDS 45.0%
! CTACGGGATAACGAGGTATT+GGG - chr4.2:17375781-17375800 None:intergenic 45.0%
! CTGAAGGGTATGGTTTGTCT+TGG + chr4.2:17373276-17373295 MS.gene028296:CDS 45.0%
! GAGGGTTTGGTTGTGCAAAT+GGG + chr4.2:17373060-17373079 MS.gene028296:CDS 45.0%
! GTCTTGGCTTCTTGTTGTCT+TGG + chr4.2:17375169-17375188 MS.gene028296:CDS 45.0%
! TAATAGGGAGGAGGTTTTCC+AGG + chr4.2:17375120-17375139 MS.gene028296:intron 45.0%
! TGGCTTCTTGTTGTCTTGGT+AGG + chr4.2:17375173-17375192 MS.gene028296:CDS 45.0%
!! AGATAGTGGAAAGCAGGCTT+AGG + chr4.2:17374181-17374200 MS.gene028296:intron 45.0%
!! AGCTCAACTGGTTTGAGCTA+CGG - chr4.2:17375798-17375817 None:intergenic 45.0%
!! CGAGGTATTGGGTTCAAACA+CGG - chr4.2:17375770-17375789 None:intergenic 45.0%
!! GTAATGACGAGCGTCGTTTT+CGG - chr4.2:17373018-17373037 None:intergenic 45.0%
!! TGAAGGTGTTGTGGAAGATG+TGG + chr4.2:17373499-17373518 MS.gene028296:CDS 45.0%
!!! GGGTTGTTGGTGATTTTGTG+TGG + chr4.2:17373456-17373475 MS.gene028296:intron 45.0%
!!! TTTTCGGGTTAATAGGGAGG+AGG + chr4.2:17375111-17375130 MS.gene028296:intron 45.0%
ACAACTGCAGAGTGGAGTCA+TGG - chr4.2:17374657-17374676 None:intergenic 50.0%
ACGATCGTCCTGAAGTTGGA+GGG + chr4.2:17373042-17373061 MS.gene028296:CDS 50.0%
AGTCCAAAGATCAGGGGACA+TGG - chr4.2:17375566-17375585 None:intergenic 50.0%
CAACCAAACCCTCCAACTTC+AGG - chr4.2:17373053-17373072 None:intergenic 50.0%
CCGTCCAAAAACTCATCCTC+GGG + chr4.2:17372925-17372944 MS.gene028296:CDS 50.0%
CGGAGATAGGGATGTTGTGT+TGG + chr4.2:17374080-17374099 MS.gene028296:intron 50.0%
GAAAGCAGGCTTAGGTGGTT+TGG + chr4.2:17374189-17374208 MS.gene028296:intron 50.0%
GATGACGAGATCGTAGAGGA+AGG - chr4.2:17372829-17372848 None:intergenic 50.0%
GATGACGATCGTCCTGAAGT+TGG + chr4.2:17373038-17373057 MS.gene028296:CDS 50.0%
GCTACGGGATAACGAGGTAT+TGG - chr4.2:17375782-17375801 None:intergenic 50.0%
GGGATGTTGTGTTGGATGTG+TGG + chr4.2:17374088-17374107 MS.gene028296:intron 50.0%
GTCCAAAGATCAGGGGACAT+GGG - chr4.2:17375565-17375584 None:intergenic 50.0%
GTGTTGTGGAAGATGTGGCT+TGG + chr4.2:17373504-17373523 MS.gene028296:CDS 50.0%
GTTGAACTTGAGCGAGCATG+AGG - chr4.2:17372980-17372999 None:intergenic 50.0%
GTTTGAGCTACGGGATAACG+AGG - chr4.2:17375788-17375807 None:intergenic 50.0%
TAGTGGAAAGCAGGCTTAGG+TGG + chr4.2:17374184-17374203 MS.gene028296:intron 50.0%
TATGCCAGAACAGTCAGCAC+AGG + chr4.2:17376170-17376189 MS.gene028296:CDS 50.0%
TCACCAGAGGATGCTGAAGA+TGG + chr4.2:17375991-17376010 MS.gene028296:CDS 50.0%
TCCACTCTGCAGTTGTACAG+TGG + chr4.2:17374661-17374680 MS.gene028296:intron 50.0%
TGAGGGTTGGATAGCTCAAC+TGG - chr4.2:17375810-17375829 None:intergenic 50.0%
TTAAAAGCCGGTCCTTCCAC+TGG + chr4.2:17375345-17375364 MS.gene028296:intron 50.0%
TTGGACGGAGTAGTCTTTGC+CGG - chr4.2:17372913-17372932 None:intergenic 50.0%
TTGTGGGATCTGCGCAAGAT+TGG + chr4.2:17374983-17375002 MS.gene028296:CDS 50.0%
! CGTTTTCGGAATCGTCGAGA+GGG - chr4.2:17373004-17373023 None:intergenic 50.0%
! GAGTGATGACGAGATCGTAG+AGG - chr4.2:17372833-17372852 None:intergenic 50.0%
! GGAGGGTTTGGTTGTGCAAA+TGG + chr4.2:17373059-17373078 MS.gene028296:CDS 50.0%
! TCGTTTTCGGAATCGTCGAG+AGG - chr4.2:17373005-17373024 None:intergenic 50.0%
! TGATGGTGTGGGATCTTAGC+AGG + chr4.2:17375200-17375219 MS.gene028296:CDS 50.0%
! TGGGTTCGTTTTCGGAAGTG+TGG - chr4.2:17372953-17372972 None:intergenic 50.0%
! TGGTAGGAGACTGATGGTGT+GGG + chr4.2:17375189-17375208 MS.gene028296:CDS 50.0%
! TTGGTAGGAGACTGATGGTG+TGG + chr4.2:17375188-17375207 MS.gene028296:CDS 50.0%
!! CCCGAGGATGAGTTTTTGGA+CGG - chr4.2:17372928-17372947 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCTAC+GGG - chr4.2:17375797-17375816 None:intergenic 50.0%
!! GGGTTCGTTTTCGGAAGTGT+GGG - chr4.2:17372952-17372971 None:intergenic 50.0%
AGCCATTCGACGGTGAGAGA+TGG - chr4.2:17372870-17372889 None:intergenic 55.0%
CACCCATGTCCCCTGATCTT+TGG + chr4.2:17375560-17375579 MS.gene028296:intron 55.0%
CACGCAACATTCAAGCTGGG+TGG + chr4.2:17373943-17373962 MS.gene028296:intron 55.0%
CGTCCTGAAGTTGGAGGGTT+TGG + chr4.2:17373047-17373066 MS.gene028296:CDS 55.0%
GACGATCGTCCTGAAGTTGG+AGG + chr4.2:17373041-17373060 MS.gene028296:CDS 55.0%
GCCACTGTACAACTGCAGAG+TGG - chr4.2:17374665-17374684 None:intergenic 55.0%
GCGATCTGGAAGCCATTCGA+CGG - chr4.2:17372880-17372899 None:intergenic 55.0%
GGACCATCTTCAGCATCCTC+TGG - chr4.2:17375997-17376016 None:intergenic 55.0%
TTGGGTTCAAACACGGACGG+AGG - chr4.2:17375763-17375782 None:intergenic 55.0%
! AGGGAGGAGGTTTTCCAGGT+TGG + chr4.2:17375124-17375143 MS.gene028296:intron 55.0%
! GGGTCCCGAGGATGAGTTTT+TGG - chr4.2:17372932-17372951 None:intergenic 55.0%
! TCTTTGGGTTCCAGCCAACC+TGG - chr4.2:17375141-17375160 None:intergenic 55.0%
!! AGGAGGTTTTCCAGGTTGGC+TGG + chr4.2:17375128-17375147 MS.gene028296:CDS 55.0%
ACGGAGTAGTCTTTGCCGGC+GGG - chr4.2:17372909-17372928 None:intergenic 60.0%
CGACGAAGAGCAGTCACCAG+AGG + chr4.2:17375978-17375997 MS.gene028296:CDS 60.0%
GACGGAGTAGTCTTTGCCGG+CGG - chr4.2:17372910-17372929 None:intergenic 60.0%
GGCCATCTCTCACCGTCGAA+TGG + chr4.2:17372865-17372884 MS.gene028296:CDS 60.0%
! TTTCGGAAGTGTGGGTCCCG+AGG - chr4.2:17372944-17372963 None:intergenic 60.0%
CCAGATCGCACTGAACCCGC+CGG + chr4.2:17372891-17372910 MS.gene028296:CDS 65.0%
!! GGGGCCTGTGCTGACTGTTC+TGG - chr4.2:17376177-17376196 None:intergenic 65.0%
! CCGGCGGGTTCAGTGCGATC+TGG - chr4.2:17372894-17372913 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 17372741 17376200 17372741 ID=MS.gene028296
chr4.2 mRNA 17372741 17376200 17372741 ID=MS.gene028296.t1;Parent=MS.gene028296
chr4.2 exon 17372741 17373412 17372741 ID=MS.gene028296.t1.exon1;Parent=MS.gene028296.t1
chr4.2 CDS 17372741 17373412 17372741 ID=cds.MS.gene028296.t1;Parent=MS.gene028296.t1
chr4.2 exon 17373494 17373646 17373494 ID=MS.gene028296.t1.exon2;Parent=MS.gene028296.t1
chr4.2 CDS 17373494 17373646 17373494 ID=cds.MS.gene028296.t1;Parent=MS.gene028296.t1
chr4.2 exon 17374911 17375035 17374911 ID=MS.gene028296.t1.exon3;Parent=MS.gene028296.t1
chr4.2 CDS 17374911 17375035 17374911 ID=cds.MS.gene028296.t1;Parent=MS.gene028296.t1
chr4.2 exon 17375126 17375221 17375126 ID=MS.gene028296.t1.exon4;Parent=MS.gene028296.t1
chr4.2 CDS 17375126 17375221 17375126 ID=cds.MS.gene028296.t1;Parent=MS.gene028296.t1
chr4.2 exon 17375975 17376200 17375975 ID=MS.gene028296.t1.exon5;Parent=MS.gene028296.t1
chr4.2 CDS 17375975 17376200 17375975 ID=cds.MS.gene028296.t1;Parent=MS.gene028296.t1
Gene Sequence

>MS.gene028296

ATGGGGAAAGAAGACGAAGAAATGAGAGGCGAAATAGAAGAACGAATAATCAACGAAGAATACAAAATCTGGAAGAAAAACAGTCCCTTCCTCTACGATCTCGTCATCACTCATGCTCTCGAATGGCCATCTCTCACCGTCGAATGGCTTCCAGATCGCACTGAACCCGCCGGCAAAGACTACTCCGTCCAAAAACTCATCCTCGGGACCCACACTTCCGAAAACGAACCCAATTACCTCATGCTCGCTCAAGTTCAACTCCCTCTCGACGATTCCGAAAACGACGCTCGTCATTACGATGACGATCGTCCTGAAGTTGGAGGGTTTGGTTGTGCAAATGGGAAGGTTCAGATAATTCAACAGATTAATCATGATGGTGAGGTTAATAGAGCGAGGTATATGCCTCAGAATAGTTTTGTGATTGCTACTAAGACGGTTAGTGCTGAGGTTTATGTGTTTGATTACAGTAAACATCCTTCTAAGCCTCCAATTGATGGAAGTTGTAACCCTGATTTGAGGTTAAGAGGACATAATACTGAAGGGTATGGTTTGTCTTGGAGTAAGTTTAAACAAGGTCATTTGCTTAGTGGTTCTGATGATGCTCAGATTTGTTTGTGGGATATTAATGGTACTCCTAAGAATAAGTCTCTTGACGCTCATCAGATTTTTAAGGTATTCTTATTGCTTTTTCCACTTATTTTTCGTTGTTTTTGTTGGGTTGTTGGTGATTTTGTGTGGTTTTTGTTTGTTTAGGTTCATGAAGGTGTTGTGGAAGATGTGGCTTGGCATTTGAGGCATGAGTATTTGTTTGGTTCTGTTGGGGATGATCAGTATTTGCTTGTATGGGATCTGAGAACACCGTCTGTTACTAAGCCTGTTCAGTCTTGCATTGCTCATTCAAGCGAGGTGTGTTGTTTTATCTATGTTTAAATCTAGGAATTTGTTTTGTTTATAAGCTCTTTTTACATTTGGTTTTTTTAAGGAAGTATAATTAGTTTAGGGTTTGGTTTTGTGAGAATATGAGTTTTTGTTGCATATTCTCTGATTTGTGTTAAAATAGATTTAATCTAGACAATTGTTTGTGGCTTGAAAGTAACAACTATTTTGTGGAAATTAGTGTGAGTGTGAGGGATTGGTGAATCTGTCAAAATGAGCATGGCATGGGGATACCATGTTAAGTGGACAGATACAGGGAAGTTAAACACGCAACATTCAAGCTGGGTGGTTGAAATGGAATAGGGCCTCAAGTATTTTATTCGATGCGAAAGTACTGCTCAAGTTGATGGGAAAATTTCATTGGACAACTCTAAGAACCAATATGAAAATAAATTAAGCGTGGCGGAGATAGGGATGTTGTGTTGGATGTGTGGTACACTAGACAAGATAGGATTGGAAATGACAACATTTGAGAGAGAGCTGGGGTAGCACCTATAGTAGAAAAGATAGTGGAAAGCAGGCTTAGGTGGTTTGGGTATGTAGAAAGAAGACATGTGTATTCCGTCGTAAGGACAATAGATCAGATGGAGGAGAATTACTAGAGGTAGAAGAAGGCCTATAAAAAGCATAAAAAACTATTGAAGAAAAATCTTGAGATTAATGAGTTGGATAGAAAAATATTGGTTGTTGTTGTTTAGATATGAATTATGATGTGCTGTTGTAAGAGGGAATTTGAAACATTGACTTATATTTTGTGATTATTCTAAAATTATCAATTTATTACTGTTCAATCTTCATTATATCTTTTGAAATTTATGAGTTTATGAGAATGTTTGACCCAACCCATCAAAACATAGTGATATTAGACCGAAAGGTTCAACATTGTGTTGAAAGACTTCATTCGGGGTGGGTGATAATTGAAAACTAAACACGGATAATGCATAAATTTTCAATCATCGTCAATATTTGAGAACTGGCCATGACTCCACTCTGCAGTTGTACAGTGGCTATATTTCACATATCTGGCTTCTCATATTTTCCTTGCTGATAGAATTTCCTGTCTTTACTCAGATTTTCAATCTGTTAGCTTCTTATAATGTCTTATCCGTTGTGCTCTAATTCGACTTTTTCTTTTAGCAGTGTTCTAGAGTTTTCACAATGCTGATATTGTTCTCAATATATATATCACTTCTAATAACACTTTTCTTTATATAATGACATTGGATTTTGTTAGGTTAACTGCTTGGCTTTCAATCCCTTCAATGAATGGATAGTTGCTACTGGTTCTACGGACAAAACAGTGAAATTGTGGGATCTGCGCAAGATTGGCAATGTTCTTCACACCTTTGATTGCCATAAGTAACATTCTCCGTAGATTTTTCTATATTTATTCTAGATGTAATTATATTTAACAGATATTGATCTAGATTGTTGTTTTCGGGTTAATAGGGAGGAGGTTTTCCAGGTTGGCTGGAACCCAAAGAATGAGACTGTCTTGGCTTCTTGTTGTCTTGGTAGGAGACTGATGGTGTGGGATCTTAGCAGGTATTGCTTAATGAAAGCATCACCATATCTGGACTTTTTAGTGTATTTTTTATCTGTTTCCCTGAAATGTTTACCGAGTTTTGGTATGTTGTGATTCATTAGCGATGTTTATAAATAATAAACTTAAAAGCCGGTCCTTCCACTGGATTAAAGTTTCTCTTACCTCTCAATTGTCAATTTTTTAACCTCATGGGTGAATTAAAGTTCCACTCTTTTTAGCGAATTAAGTGGACAGCAAATTCTGCCTTTCTTGAGTTATATTAAGTTCTGTAATGAGACTAATGGAGTAATGGACATAATCATTATCATGTGAACATTGATATCAAATCAGTTGTCGACACCCATGTCCCCTGATCTTTGGACTTTGATGTAGCACTGACTTTTGTTGTATGTGGGGTTCCAATTGCATGCTTCTGTTGATTCATTTGTTTGTATATAATATATGGCTTCGGTACTTGTAATGCACAGCTTGAGTGTTACAATTTTATTCTTTTTTAATGCCAAATGTTAGAATTTAGTTGTTGGATTAATATTTACTCCTCCGTCCGTGTTTGAACCCAATACCTCGTTATCCCGTAGCTCAAACCAGTTGAGCTATCCAACCCTCAAATGTTTCAAGTTAAAATGTCTATCGTGGGTTGATTTTCTGATGAAAACGAACTACTAAAAAATACCATTATTTGATTCATATATTAAGAAGTCATATATGTAAGATATATTTGCGATGACAATGTTGTTCACTCTTTTATGTAGGATCGACGAAGAGCAGTCACCAGAGGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCATACAAGCAAAATATCTGACTTCTCATGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATATGCCAGAACAGTCAGCACAGGCCCCTTAA
Protein sequence

>MS.gene028296.t1

MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPAGKDYSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQQINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKLWDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSAQAP