Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001413.t1 | XP_013464042.1 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 1.30E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001413.t1 | Q56X72 | 56.9 | 267 | 112 | 2 | 2 | 267 | 173 | 437 | 6.5e-80 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001413.t1 | A0A072V8B4 | 96.8 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 9.2e-168 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001413 | MS.gene35163 | PPI |
| MS.gene028296 | MS.gene001413 | PPI |
| MS.gene001413 | MS.gene36496 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001413.t1 | MTR_2g460800 | 96.764 | 309 | 10 | 0 | 1 | 309 | 268 | 576 | 0.0 | 636 |
| MS.gene001413.t1 | MTR_2g460800 | 95.853 | 217 | 9 | 0 | 1 | 217 | 268 | 484 | 2.01e-152 | 436 |
| MS.gene001413.t1 | MTR_4g078740 | 35.816 | 282 | 171 | 6 | 1 | 279 | 1 | 275 | 1.15e-47 | 162 |
| MS.gene001413.t1 | MTR_2g090620 | 36.864 | 236 | 144 | 3 | 59 | 292 | 137 | 369 | 1.99e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001413.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 173 | 441 | 8.57e-108 | 322 |
| MS.gene001413.t1 | AT5G58000 | 56.934 | 274 | 110 | 5 | 2 | 272 | 279 | 547 | 1.22e-106 | 323 |
| MS.gene001413.t1 | AT2G20590 | 36.782 | 261 | 156 | 3 | 17 | 272 | 122 | 378 | 1.12e-46 | 163 |
| MS.gene001413.t1 | AT2G20590 | 37.500 | 240 | 139 | 3 | 43 | 272 | 127 | 365 | 2.25e-46 | 162 |
| MS.gene001413.t1 | AT4G28430 | 39.070 | 215 | 129 | 2 | 59 | 272 | 193 | 406 | 2.99e-40 | 146 |
| MS.gene001413.t1 | AT2G20590 | 36.816 | 201 | 118 | 3 | 17 | 212 | 122 | 318 | 4.42e-31 | 119 |
Find 57 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGTTTGGAGAAATTT+TGG | 0.157130 | 2.4:-37410807 | None:intergenic |
| CTAGACTCTGCAACTTGTTT+TGG | 0.174874 | 2.4:-37410975 | None:intergenic |
| TGAAAATTTCTTACTTGAAT+TGG | 0.195478 | 2.4:-37410824 | None:intergenic |
| TCATTATTACCTGCAAATTA+AGG | 0.229353 | 2.4:-37411731 | None:intergenic |
| AGTACTATTTCAGGCTTCTT+TGG | 0.243221 | 2.4:+37412451 | MS.gene001413:intron |
| CTACTGCGTTCTTCTTCTTT+TGG | 0.250422 | 2.4:-37410940 | None:intergenic |
| GTGGAAGTTTCATAACTATT+TGG | 0.254654 | 2.4:+37412308 | MS.gene001413:CDS |
| TTGTGTTGTTTCTGTCTAAC+TGG | 0.259168 | 2.4:-37414512 | None:intergenic |
| TCTATAGATCCTTAATTTGC+AGG | 0.277885 | 2.4:+37411722 | MS.gene001413:CDS |
| GACAAGAATTCATTCAAATA+AGG | 0.278389 | 2.4:-37412120 | None:intergenic |
| CAAGATCAGCATTTGTGTTT+GGG | 0.280922 | 2.4:+37411113 | MS.gene001413:CDS |
| CATCTGTTGTTGCTCGCATT+TGG | 0.323883 | 2.4:+37414282 | MS.gene001413:CDS |
| TGCAATTTGGATGCTGAAAT+TGG | 0.325517 | 2.4:+37412092 | MS.gene001413:CDS |
| TCAAGATCAGCATTTGTGTT+TGG | 0.329810 | 2.4:+37411112 | MS.gene001413:CDS |
| GAAAATTTCTTACTTGAATT+GGG | 0.330039 | 2.4:-37410823 | None:intergenic |
| TTTCTTACTTGAATTGGGTT+TGG | 0.336832 | 2.4:-37410818 | None:intergenic |
| GAATCCTTTCTTGACTTTGT+TGG | 0.339840 | 2.4:-37414546 | None:intergenic |
| TAAGAGAACAAGATGCAATT+TGG | 0.344866 | 2.4:+37412079 | MS.gene001413:CDS |
| ATACTATCAACAACACTATA+TGG | 0.360600 | 2.4:+37414433 | MS.gene001413:CDS |
| TAGGCATATTCGGTCTAGTA+TGG | 0.366112 | 2.4:+37414252 | MS.gene001413:CDS |
| ACTACAAGAGGAACAGAAAC+TGG | 0.385936 | 2.4:-37410745 | None:intergenic |
| ATCTGTTGTTGCTCGCATTT+GGG | 0.390664 | 2.4:+37414283 | MS.gene001413:CDS |
| TCAGCATTTGTGTTTGGGAT+TGG | 0.406573 | 2.4:+37411118 | MS.gene001413:CDS |
| TTTCATAACTATTTGGAAGA+TGG | 0.416263 | 2.4:+37412315 | MS.gene001413:CDS |
| TGCAGTGTTTGTACTATTTG+TGG | 0.423837 | 2.4:+37414403 | MS.gene001413:intron |
| GAATACGAAGAGCAGATCTT+TGG | 0.436812 | 2.4:-37412487 | None:intergenic |
| GCTGTGGCTCTAGGCATATT+CGG | 0.445263 | 2.4:+37414242 | MS.gene001413:CDS |
| ATTACCTTCATTGTGGTGCC+AGG | 0.452683 | 2.4:-37412171 | None:intergenic |
| TCAGCACAATTAACTGCATA+TGG | 0.452909 | 2.4:+37412508 | MS.gene001413:CDS |
| ATTTCTGCAATGTCCTATGT+AGG | 0.468181 | 2.4:+37411673 | MS.gene001413:CDS |
| ATTTGGAAGATGGCTAAAAT+CGG | 0.474250 | 2.4:+37412325 | MS.gene001413:CDS |
| TCGTCGATTCCGGGATGCAT+GGG | 0.478641 | 2.4:+37414199 | MS.gene001413:CDS |
| GTTGTTGCTCGCATTTGGGC+AGG | 0.478972 | 2.4:+37414287 | MS.gene001413:CDS |
| GAATGGGTGGAAGATGAAAC+AGG | 0.491736 | 2.4:+37414464 | MS.gene001413:CDS |
| AAGTCAAGAAAGGATTCTAA+AGG | 0.492545 | 2.4:+37414552 | MS.gene001413:CDS |
| ACTATATGGTGAGGGATGAA+TGG | 0.492619 | 2.4:+37414447 | MS.gene001413:CDS |
| TTCGTCGATTCCGGGATGCA+TGG | 0.499984 | 2.4:+37414198 | MS.gene001413:CDS |
| AACAATCCCCTACAATCAAA+AGG | 0.507778 | 2.4:+37410770 | MS.gene001413:CDS |
| ATGCAAAGGATATCAATTTG+AGG | 0.510644 | 2.4:+37411167 | MS.gene001413:CDS |
| TGCAAATTAAGGATCTATAG+AGG | 0.521117 | 2.4:-37411720 | None:intergenic |
| CTATATGGTGAGGGATGAAT+GGG | 0.530924 | 2.4:+37414448 | MS.gene001413:CDS |
| AAGATAGACAAGGCCTACAT+AGG | 0.541659 | 2.4:-37411686 | None:intergenic |
| GGGGATTGTTTCACTACAAG+AGG | 0.543889 | 2.4:-37410757 | None:intergenic |
| GCTACCAACAAAGTCAAGAA+AGG | 0.545347 | 2.4:+37414542 | MS.gene001413:CDS |
| TACTTAAATTACCTTCATTG+TGG | 0.555434 | 2.4:-37412178 | None:intergenic |
| AGATCCTGGCACCACAATGA+AGG | 0.555506 | 2.4:+37412167 | MS.gene001413:CDS |
| CAAAACAAGTTGCAGAGTCT+AGG | 0.557021 | 2.4:+37410976 | MS.gene001413:CDS |
| AGTCTCATCTTCTTATGCAA+AGG | 0.559905 | 2.4:+37411153 | MS.gene001413:CDS |
| TGCATGAATCCCATGCATCC+CGG | 0.564871 | 2.4:-37414208 | None:intergenic |
| AGAATTCATTCAAATAAGGT+AGG | 0.591737 | 2.4:-37412116 | None:intergenic |
| CAACAGTGGATTTAATAATG+TGG | 0.598108 | 2.4:+37411080 | MS.gene001413:intron |
| AAACAGGATGTGATGAAGCA+TGG | 0.601103 | 2.4:+37414480 | MS.gene001413:CDS |
| TATGGTGAGGGATGAATGGG+TGG | 0.602229 | 2.4:+37414451 | MS.gene001413:CDS |
| ATCAACAACACTATATGGTG+AGG | 0.602777 | 2.4:+37414438 | MS.gene001413:CDS |
| AACAGGATGTGATGAAGCAT+GGG | 0.612508 | 2.4:+37414481 | MS.gene001413:CDS |
| TCAACAACACTATATGGTGA+GGG | 0.642871 | 2.4:+37414439 | MS.gene001413:CDS |
| AGATAACTGCAAGATAGACA+AGG | 0.714341 | 2.4:-37411696 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATTATATATATATAGT+GGG | + | chr2.4:37411984-37412003 | MS.gene001413:intron | 10.0% |
| !!! | TATTTTGAAAATGATTATAT+AGG | + | chr2.4:37414014-37414033 | MS.gene001413:intron | 10.0% |
| !! | ATAATGCAAATATTCTAAAT+AGG | - | chr2.4:37411381-37411400 | None:intergenic | 15.0% |
| !! | CAAATTATATATATATAGTG+GGG | + | chr2.4:37411985-37412004 | MS.gene001413:intron | 15.0% |
| !! | GACAAATTATATATATATAG+TGG | + | chr2.4:37411983-37412002 | MS.gene001413:intron | 15.0% |
| !! | TAATTAATAAATACATCACA+TGG | + | chr2.4:37413601-37413620 | MS.gene001413:intron | 15.0% |
| !!! | ATACATATTTTTCATTTTCA+GGG | + | chr2.4:37413282-37413301 | MS.gene001413:intron | 15.0% |
| !!! | ATTTTTCGAGTTTATATTTA+AGG | + | chr2.4:37411961-37411980 | MS.gene001413:intron | 15.0% |
| !!! | CAGTTGTTAATTTTTTTTAT+GGG | + | chr2.4:37412016-37412035 | MS.gene001413:intron | 15.0% |
| !!! | TATACATATTTTTCATTTTC+AGG | + | chr2.4:37413281-37413300 | MS.gene001413:intron | 15.0% |
| !!! | TCAGTTGTTAATTTTTTTTA+TGG | + | chr2.4:37412015-37412034 | MS.gene001413:intron | 15.0% |
| !!! | TTATTATTATTGCTAGTTTT+AGG | + | chr2.4:37413191-37413210 | MS.gene001413:intron | 15.0% |
| !! | AAACTTACTATATACGAATA+CGG | - | chr2.4:37411937-37411956 | None:intergenic | 20.0% |
| !! | AATATCACGTGTATAAAAAA+TGG | - | chr2.4:37413017-37413036 | None:intergenic | 20.0% |
| !! | GAAAATTTCTTACTTGAATT+GGG | - | chr2.4:37410826-37410845 | None:intergenic | 20.0% |
| !! | TCATAATAATCGTAACATAA+TGG | + | chr2.4:37413776-37413795 | MS.gene001413:intron | 20.0% |
| !! | TGAAAATTTCTTACTTGAAT+TGG | - | chr2.4:37410827-37410846 | None:intergenic | 20.0% |
| !!! | ACCAATTTTTGCTTATATTT+TGG | + | chr2.4:37411301-37411320 | MS.gene001413:intron | 20.0% |
| !!! | ATAAATTTTCATCATACTAG+TGG | - | chr2.4:37413906-37413925 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATTGACATAT+TGG | - | chr2.4:37414044-37414063 | None:intergenic | 20.0% |
| !!! | CAACATTAAATTTGTTTTTG+TGG | + | chr2.4:37412700-37412719 | MS.gene001413:intron | 20.0% |
| !!! | CAATATAACTTTTACTGTTT+CGG | + | chr2.4:37411614-37411633 | MS.gene001413:intron | 20.0% |
| !!! | CAGTCAATTTTGTAATTTTT+GGG | + | chr2.4:37410855-37410874 | MS.gene001413:intron | 20.0% |
| !!! | CCAATTTTTGCTTATATTTT+GGG | + | chr2.4:37411302-37411321 | MS.gene001413:intron | 20.0% |
| !!! | GATATGATAAAGCAAATTTT+TGG | + | chr2.4:37414174-37414193 | MS.gene001413:intron | 20.0% |
| !!! | TAAAATCGGTAAGTTTTTAA+AGG | + | chr2.4:37412339-37412358 | MS.gene001413:intron | 20.0% |
| !!! | TACATATCTACTCTTTTATA+CGG | + | chr2.4:37412635-37412654 | MS.gene001413:intron | 20.0% |
| !!! | TCAGTCAATTTTGTAATTTT+TGG | + | chr2.4:37410854-37410873 | MS.gene001413:intron | 20.0% |
| !!! | TCTTTTATTTTGGTAAACTA+GGG | + | chr2.4:37413738-37413757 | MS.gene001413:intron | 20.0% |
| !!! | TGTGGATTTTTTTTTTTTTG+AGG | + | chr2.4:37412718-37412737 | MS.gene001413:intron | 20.0% |
| !!! | TGTGTTTTACTAATCTTTTA+AGG | + | chr2.4:37410910-37410929 | MS.gene001413:intron | 20.0% |
| ! | AACTTACTATATACGAATAC+GGG | - | chr2.4:37411936-37411955 | None:intergenic | 25.0% |
| ! | ACATTAATTACATTATCAGC+GGG | - | chr2.4:37411882-37411901 | None:intergenic | 25.0% |
| ! | ACTGCATTGTTAAATTAGTT+GGG | + | chr2.4:37411787-37411806 | MS.gene001413:intron | 25.0% |
| ! | AGAATTCATTCAAATAAGGT+AGG | - | chr2.4:37412119-37412138 | None:intergenic | 25.0% |
| ! | ATACTATCAACAACACTATA+TGG | + | chr2.4:37414433-37414452 | MS.gene001413:CDS | 25.0% |
| ! | ATAGTGTAGAATAGATTAGA+CGG | + | chr2.4:37412562-37412581 | MS.gene001413:intron | 25.0% |
| ! | CACATTAATTACATTATCAG+CGG | - | chr2.4:37411883-37411902 | None:intergenic | 25.0% |
| ! | CCCAAAATATAAGCAAAAAT+TGG | - | chr2.4:37411305-37411324 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr2.4:37411367-37411386 | None:intergenic | 25.0% |
| ! | GACAAGAATTCATTCAAATA+AGG | - | chr2.4:37412123-37412142 | None:intergenic | 25.0% |
| ! | TACTGCATTGTTAAATTAGT+TGG | + | chr2.4:37411786-37411805 | MS.gene001413:intron | 25.0% |
| ! | TACTTAAATTACCTTCATTG+TGG | - | chr2.4:37412181-37412200 | None:intergenic | 25.0% |
| ! | TAGTAATAATGTAGATCTGA+CGG | + | chr2.4:37413078-37413097 | MS.gene001413:intron | 25.0% |
| ! | TCAACATAAATTGTTGGATT+TGG | + | chr2.4:37411244-37411263 | MS.gene001413:intron | 25.0% |
| ! | TCATTATTACCTGCAAATTA+AGG | - | chr2.4:37411734-37411753 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr2.4:37411368-37411387 | None:intergenic | 25.0% |
| ! | TCTACATTATTACTATGCAT+TGG | - | chr2.4:37413073-37413092 | None:intergenic | 25.0% |
| ! | TTTCATAACTATTTGGAAGA+TGG | + | chr2.4:37412315-37412334 | MS.gene001413:CDS | 25.0% |
| !!! | ATTATTGCTAGTTTTAGGTT+TGG | + | chr2.4:37413196-37413215 | MS.gene001413:intron | 25.0% |
| !!! | GTCTTTTATTTTGGTAAACT+AGG | + | chr2.4:37413737-37413756 | MS.gene001413:intron | 25.0% |
| !!! | GTGACAATTGTCTTTTATTT+TGG | + | chr2.4:37413728-37413747 | MS.gene001413:intron | 25.0% |
| !!! | TAATTTTTTTTATGGGCTCA+GGG | + | chr2.4:37412023-37412042 | MS.gene001413:intron | 25.0% |
| !!! | TTAATTTTTTTTATGGGCTC+AGG | + | chr2.4:37412022-37412041 | MS.gene001413:intron | 25.0% |
| !!! | TTGAATTCCTTTTGATTGTA+GGG | - | chr2.4:37410780-37410799 | None:intergenic | 25.0% |
| !!! | TTTGAATTCCTTTTGATTGT+AGG | - | chr2.4:37410781-37410800 | None:intergenic | 25.0% |
| !!! | TTTTTGAGGAATTGTTTTTC+TGG | + | chr2.4:37412732-37412751 | MS.gene001413:intron | 25.0% |
| AAATAAGACTGCAAAAAGCA+AGG | - | chr2.4:37411657-37411676 | None:intergenic | 30.0% | |
| AACCTATACTCATCAAAATC+AGG | - | chr2.4:37412541-37412560 | None:intergenic | 30.0% | |
| AACTGGTCAACATAAATTGT+TGG | + | chr2.4:37411238-37411257 | MS.gene001413:intron | 30.0% | |
| AATAAGACTGCAAAAAGCAA+GGG | - | chr2.4:37411656-37411675 | None:intergenic | 30.0% | |
| ACACTAGTTAAACTAATGTG+TGG | + | chr2.4:37414364-37414383 | MS.gene001413:intron | 30.0% | |
| ACGAAAAGTAAAGACAAAAG+AGG | - | chr2.4:37413870-37413889 | None:intergenic | 30.0% | |
| ACTAACTCTAGTACTATTTC+AGG | + | chr2.4:37412442-37412461 | MS.gene001413:intron | 30.0% | |
| AGTAATAATGTAGATCTGAC+GGG | + | chr2.4:37413079-37413098 | MS.gene001413:intron | 30.0% | |
| ATACGACAAAGATATAAGGA+AGG | + | chr2.4:37412983-37413002 | MS.gene001413:intron | 30.0% | |
| ATGCAAAGGATATCAATTTG+AGG | + | chr2.4:37411167-37411186 | MS.gene001413:CDS | 30.0% | |
| ATTTGGAAGATGGCTAAAAT+CGG | + | chr2.4:37412325-37412344 | MS.gene001413:CDS | 30.0% | |
| CATTATTAAATCCACTGTTG+AGG | - | chr2.4:37411080-37411099 | None:intergenic | 30.0% | |
| GGTCAACAAAACAATGTATT+TGG | - | chr2.4:37411284-37411303 | None:intergenic | 30.0% | |
| GTGGAAGTTTCATAACTATT+TGG | + | chr2.4:37412308-37412327 | MS.gene001413:CDS | 30.0% | |
| TAAAGGCCTAACAAAATGAT+GGG | + | chr2.4:37412356-37412375 | MS.gene001413:intron | 30.0% | |
| TAAATATAAGCATGCACGAT+CGG | - | chr2.4:37412615-37412634 | None:intergenic | 30.0% | |
| TAAGAGAACAAGATGCAATT+TGG | + | chr2.4:37412079-37412098 | MS.gene001413:CDS | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr2.4:37411579-37411598 | MS.gene001413:intron | 30.0% | |
| TCCAATACGACAAAGATATA+AGG | + | chr2.4:37412979-37412998 | MS.gene001413:intron | 30.0% | |
| TCCTTATATCTTTGTCGTAT+TGG | - | chr2.4:37412983-37413002 | None:intergenic | 30.0% | |
| TGCAAATTAAGGATCTATAG+AGG | - | chr2.4:37411723-37411742 | None:intergenic | 30.0% | |
| TTAAAGGCCTAACAAAATGA+TGG | + | chr2.4:37412355-37412374 | MS.gene001413:intron | 30.0% | |
| TTATAATTTCTCCTCAACAG+TGG | + | chr2.4:37411066-37411085 | MS.gene001413:intron | 30.0% | |
| TTTCTTACTTGAATTGGGTT+TGG | - | chr2.4:37410821-37410840 | None:intergenic | 30.0% | |
| ! | AATTGGGTTTGGAGAAATTT+TGG | - | chr2.4:37410810-37410829 | None:intergenic | 30.0% |
| ! | CAACAGTGGATTTAATAATG+TGG | + | chr2.4:37411080-37411099 | MS.gene001413:intron | 30.0% |
| ! | TATACGAATACGGGTATTTT+AGG | - | chr2.4:37411927-37411946 | None:intergenic | 30.0% |
| ! | TGTTTATTTCATGCGAGTTT+TGG | + | chr2.4:37412950-37412969 | MS.gene001413:intron | 30.0% |
| !! | AAACACAGTATTGTTGACTT+TGG | - | chr2.4:37413828-37413847 | None:intergenic | 30.0% |
| !! | AACACAGTATTGTTGACTTT+GGG | - | chr2.4:37413827-37413846 | None:intergenic | 30.0% |
| !! | TCTATAGATCCTTAATTTGC+AGG | + | chr2.4:37411722-37411741 | MS.gene001413:CDS | 30.0% |
| !! | TGAATTCCTTTTGATTGTAG+GGG | - | chr2.4:37410779-37410798 | None:intergenic | 30.0% |
| !! | TTCCTGATTTTGATGAGTAT+AGG | + | chr2.4:37412536-37412555 | MS.gene001413:intron | 30.0% |
| !!! | AATTTTTTTTATGGGCTCAG+GGG | + | chr2.4:37412024-37412043 | MS.gene001413:intron | 30.0% |
| !!! | CACACACATTTTCTAAAGTT+AGG | - | chr2.4:37410894-37410913 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGGGACTA+AGG | + | chr2.4:37411309-37411328 | MS.gene001413:intron | 30.0% |
| !!! | TTTGGTTTTCTTTTAGCCAA+TGG | + | chr2.4:37413633-37413652 | MS.gene001413:intron | 30.0% |
| AAAAAACATGATTGCGCCAT+TGG | - | chr2.4:37413652-37413671 | None:intergenic | 35.0% | |
| AAACTAGGGAACACAATTGT+TGG | + | chr2.4:37413752-37413771 | MS.gene001413:intron | 35.0% | |
| AAATATCCAGAGAGAGTCAT+TGG | + | chr2.4:37413961-37413980 | MS.gene001413:intron | 35.0% | |
| AAATGTGTACGAATTGCAGT+TGG | + | chr2.4:37412258-37412277 | MS.gene001413:intron | 35.0% | |
| AACAATCCCCTACAATCAAA+AGG | + | chr2.4:37410770-37410789 | MS.gene001413:CDS | 35.0% | |
| ACCTTACAAGTGATAAGAGA+GGG | - | chr2.4:37412893-37412912 | None:intergenic | 35.0% | |
| AGATAACTGCAAGATAGACA+AGG | - | chr2.4:37411699-37411718 | None:intergenic | 35.0% | |
| AGTACTATTTCAGGCTTCTT+TGG | + | chr2.4:37412451-37412470 | MS.gene001413:intron | 35.0% | |
| AGTCTCATCTTCTTATGCAA+AGG | + | chr2.4:37411153-37411172 | MS.gene001413:CDS | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr2.4:37411363-37411382 | None:intergenic | 35.0% | |
| ATCAACAACACTATATGGTG+AGG | + | chr2.4:37414438-37414457 | MS.gene001413:CDS | 35.0% | |
| ATTTCTGCAATGTCCTATGT+AGG | + | chr2.4:37411673-37411692 | MS.gene001413:CDS | 35.0% | |
| CAAGATCAGCATTTGTGTTT+GGG | + | chr2.4:37411113-37411132 | MS.gene001413:CDS | 35.0% | |
| CCTACGTGTTAAAATTAGAG+TGG | - | chr2.4:37411820-37411839 | None:intergenic | 35.0% | |
| CTAGTTAAACTAATGTGTGG+TGG | + | chr2.4:37414367-37414386 | MS.gene001413:intron | 35.0% | |
| GAATCCTTTCTTGACTTTGT+TGG | - | chr2.4:37414549-37414568 | None:intergenic | 35.0% | |
| GCAATTCGTACACATTTAGA+GGG | - | chr2.4:37412255-37412274 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr2.4:37411578-37411597 | MS.gene001413:intron | 35.0% | |
| TACCTTACAAGTGATAAGAG+AGG | - | chr2.4:37412894-37412913 | None:intergenic | 35.0% | |
| TCAACAACACTATATGGTGA+GGG | + | chr2.4:37414439-37414458 | MS.gene001413:CDS | 35.0% | |
| TCAAGATCAGCATTTGTGTT+TGG | + | chr2.4:37411112-37411131 | MS.gene001413:CDS | 35.0% | |
| TCAGCACAATTAACTGCATA+TGG | + | chr2.4:37412508-37412527 | MS.gene001413:CDS | 35.0% | |
| TCCAAAATGTAAGCACAAAC+TGG | + | chr2.4:37411221-37411240 | MS.gene001413:intron | 35.0% | |
| TGCAATTCGTACACATTTAG+AGG | - | chr2.4:37412256-37412275 | None:intergenic | 35.0% | |
| TGCAATTTGGATGCTGAAAT+TGG | + | chr2.4:37412092-37412111 | MS.gene001413:CDS | 35.0% | |
| TGCAGTGTTTGTACTATTTG+TGG | + | chr2.4:37414403-37414422 | MS.gene001413:intron | 35.0% | |
| TGGAGTCAACATAGAATAGA+AGG | - | chr2.4:37413053-37413072 | None:intergenic | 35.0% | |
| TTAATTACATTATCAGCGGG+TGG | - | chr2.4:37411879-37411898 | None:intergenic | 35.0% | |
| TTGATCCCATTACTTGCATT+GGG | + | chr2.4:37413691-37413710 | MS.gene001413:intron | 35.0% | |
| TTTGATCCCATTACTTGCAT+TGG | + | chr2.4:37413690-37413709 | MS.gene001413:intron | 35.0% | |
| ! | ACCAGTTTGTGCTTACATTT+TGG | - | chr2.4:37411225-37411244 | None:intergenic | 35.0% |
| ! | GAAAGACCCATCATTTTGTT+AGG | - | chr2.4:37412365-37412384 | None:intergenic | 35.0% |
| ! | TTTTCATCATACTAGTGGAG+TGG | - | chr2.4:37413901-37413920 | None:intergenic | 35.0% |
| !! | AGCTAGTTTGATTTTGTCGT+TGG | - | chr2.4:37413540-37413559 | None:intergenic | 35.0% |
| !! | AGTATTGTTGACTTTGGGAT+TGG | - | chr2.4:37413822-37413841 | None:intergenic | 35.0% |
| !! | ATCACATGGATTAGCATCTT+TGG | + | chr2.4:37413615-37413634 | MS.gene001413:intron | 35.0% |
| !! | CCACTCTAATTTTAACACGT+AGG | + | chr2.4:37411817-37411836 | MS.gene001413:intron | 35.0% |
| !! | GTATTGTTGACTTTGGGATT+GGG | - | chr2.4:37413821-37413840 | None:intergenic | 35.0% |
| !! | TAGACTCTGCAACTTGTTTT+GGG | - | chr2.4:37410977-37410996 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTTCTGTCTAAC+TGG | - | chr2.4:37414515-37414534 | None:intergenic | 35.0% |
| !!! | AAACTGAAAGCACTTTTCTC+TGG | + | chr2.4:37412144-37412163 | MS.gene001413:CDS | 35.0% |
| !!! | ATTTTTGGATTCGTCGATTC+CGG | + | chr2.4:37414189-37414208 | MS.gene001413:CDS | 35.0% |
| !!! | TGCAACTTGTTTTGGGTTTT+TGG | - | chr2.4:37410970-37410989 | None:intergenic | 35.0% |
| !!! | TGCTTACATTTTGGAATCGA+GGG | - | chr2.4:37411216-37411235 | None:intergenic | 35.0% |
| AAACAGGATGTGATGAAGCA+TGG | + | chr2.4:37414480-37414499 | MS.gene001413:CDS | 40.0% | |
| AACAGGATGTGATGAAGCAT+GGG | + | chr2.4:37414481-37414500 | MS.gene001413:CDS | 40.0% | |
| AAGAGACCCAATGCAAGTAA+TGG | - | chr2.4:37413700-37413719 | None:intergenic | 40.0% | |
| AAGATAGACAAGGCCTACAT+AGG | - | chr2.4:37411689-37411708 | None:intergenic | 40.0% | |
| ACTACAAGAGGAACAGAAAC+TGG | - | chr2.4:37410748-37410767 | None:intergenic | 40.0% | |
| ACTATATGGTGAGGGATGAA+TGG | + | chr2.4:37414447-37414466 | MS.gene001413:CDS | 40.0% | |
| AGAGACCCAATGCAAGTAAT+GGG | - | chr2.4:37413699-37413718 | None:intergenic | 40.0% | |
| ATCTGTTGTTGCTCGCATTT+GGG | + | chr2.4:37414283-37414302 | MS.gene001413:CDS | 40.0% | |
| ATGCACTCACAAAAAAGCTG+TGG | + | chr2.4:37414226-37414245 | MS.gene001413:CDS | 40.0% | |
| ATTTAGTGTATGCCGACAGA+AGG | - | chr2.4:37412671-37412690 | None:intergenic | 40.0% | |
| CAAAACAAGTTGCAGAGTCT+AGG | + | chr2.4:37410976-37410995 | MS.gene001413:CDS | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr2.4:37411583-37411602 | MS.gene001413:intron | 40.0% | |
| CTATATGGTGAGGGATGAAT+GGG | + | chr2.4:37414448-37414467 | MS.gene001413:CDS | 40.0% | |
| GAATACGAAGAGCAGATCTT+TGG | - | chr2.4:37412490-37412509 | None:intergenic | 40.0% | |
| GCTACCAACAAAGTCAAGAA+AGG | + | chr2.4:37414542-37414561 | MS.gene001413:CDS | 40.0% | |
| GGATTATGATACCCTTCTGT+CGG | + | chr2.4:37412656-37412675 | MS.gene001413:intron | 40.0% | |
| GTAGAATAGATTAGACGGTG+CGG | + | chr2.4:37412567-37412586 | MS.gene001413:intron | 40.0% | |
| TACACTGACAGACAGACAAA+TGG | + | chr2.4:37412410-37412429 | MS.gene001413:intron | 40.0% | |
| TAGGCATATTCGGTCTAGTA+TGG | + | chr2.4:37414252-37414271 | MS.gene001413:CDS | 40.0% | |
| TTTAGTGTATGCCGACAGAA+GGG | - | chr2.4:37412670-37412689 | None:intergenic | 40.0% | |
| ! | CTACTGCGTTCTTCTTCTTT+TGG | - | chr2.4:37410943-37410962 | None:intergenic | 40.0% |
| ! | TCAGCATTTGTGTTTGGGAT+TGG | + | chr2.4:37411118-37411137 | MS.gene001413:CDS | 40.0% |
| !! | CTAGACTCTGCAACTTGTTT+TGG | - | chr2.4:37410978-37410997 | None:intergenic | 40.0% |
| !! | GGCAGTTTTGCTCTTTGTTT+TGG | + | chr2.4:37412279-37412298 | MS.gene001413:CDS | 40.0% |
| !!! | CTCTTTGTTTTGGCAAGATG+TGG | + | chr2.4:37412289-37412308 | MS.gene001413:CDS | 40.0% |
| !!! | GTGCTTACATTTTGGAATCG+AGG | - | chr2.4:37411217-37411236 | None:intergenic | 40.0% |
| !!! | TTTTTGGATTCGTCGATTCC+GGG | + | chr2.4:37414190-37414209 | MS.gene001413:CDS | 40.0% |
| ATCATACTAGTGGAGTGGCT+GGG | - | chr2.4:37413896-37413915 | None:intergenic | 45.0% | |
| ATTACCTTCATTGTGGTGCC+AGG | - | chr2.4:37412174-37412193 | None:intergenic | 45.0% | |
| CACAAAAAAGCTGTGGCTCT+AGG | + | chr2.4:37414233-37414252 | MS.gene001413:CDS | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr2.4:37411565-37411584 | MS.gene001413:intron | 45.0% | |
| CATCTGTTGTTGCTCGCATT+TGG | + | chr2.4:37414282-37414301 | MS.gene001413:CDS | 45.0% | |
| GAATGGGTGGAAGATGAAAC+AGG | + | chr2.4:37414464-37414483 | MS.gene001413:CDS | 45.0% | |
| GAGGGTTCTTCTATCTATGC+TGG | - | chr2.4:37412237-37412256 | None:intergenic | 45.0% | |
| GCAAAACCAATGACTCTCTC+TGG | - | chr2.4:37413970-37413989 | None:intergenic | 45.0% | |
| GCCCTCTCTTATCACTTGTA+AGG | + | chr2.4:37412889-37412908 | MS.gene001413:intron | 45.0% | |
| GGGGATTGTTTCACTACAAG+AGG | - | chr2.4:37410760-37410779 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2.4:37411587-37411606 | MS.gene001413:intron | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2.4:37411606-37411587 | None:intergenic | 45.0% | |
| AATGGTCCTCCACATCCTTG+TGG | + | chr2.4:37413794-37413813 | MS.gene001413:intron | 50.0% | |
| AGATCCTGGCACCACAATGA+AGG | + | chr2.4:37412167-37412186 | MS.gene001413:CDS | 50.0% | |
| CATCATACTAGTGGAGTGGC+TGG | - | chr2.4:37413897-37413916 | None:intergenic | 50.0% | |
| CATGCACGATCGGCTAATGT+GGG | - | chr2.4:37412605-37412624 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2.4:37411586-37411605 | MS.gene001413:intron | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2.4:37411605-37411586 | None:intergenic | 50.0% | |
| TATGGTGAGGGATGAATGGG+TGG | + | chr2.4:37414451-37414470 | MS.gene001413:CDS | 50.0% | |
| TGCATGAATCCCATGCATCC+CGG | - | chr2.4:37414211-37414230 | None:intergenic | 50.0% | |
| TGTCGTTGGATGAGACGATG+AGG | - | chr2.4:37413526-37413545 | None:intergenic | 50.0% | |
| !! | ACTTTGGGATTGGGACCACA+AGG | - | chr2.4:37413812-37413831 | None:intergenic | 50.0% |
| !! | GCACTTTTCTCTGGAGATCC+TGG | + | chr2.4:37412153-37412172 | MS.gene001413:CDS | 50.0% |
| !! | GCTGTGGCTCTAGGCATATT+CGG | + | chr2.4:37414242-37414261 | MS.gene001413:CDS | 50.0% |
| AGACGGTGCGGTGCTTTCAT+GGG | + | chr2.4:37412579-37412598 | MS.gene001413:intron | 55.0% | |
| GCATGCACGATCGGCTAATG+TGG | - | chr2.4:37412606-37412625 | None:intergenic | 55.0% | |
| GGATTGGGACCACAAGGATG+TGG | - | chr2.4:37413806-37413825 | None:intergenic | 55.0% | |
| GTTGTTGCTCGCATTTGGGC+AGG | + | chr2.4:37414287-37414306 | MS.gene001413:CDS | 55.0% | |
| TAGACGGTGCGGTGCTTTCA+TGG | + | chr2.4:37412578-37412597 | MS.gene001413:intron | 55.0% | |
| TTGGGACCACAAGGATGTGG+AGG | - | chr2.4:37413803-37413822 | None:intergenic | 55.0% | |
| !! | TCGTCGATTCCGGGATGCAT+GGG | + | chr2.4:37414199-37414218 | MS.gene001413:CDS | 55.0% |
| !! | TTCGTCGATTCCGGGATGCA+TGG | + | chr2.4:37414198-37414217 | MS.gene001413:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37410715 | 37414571 | 37410715 | ID=MS.gene001413 |
| chr2.4 | mRNA | 37410715 | 37414571 | 37410715 | ID=MS.gene001413.t1;Parent=MS.gene001413 |
| chr2.4 | exon | 37410715 | 37410832 | 37410715 | ID=MS.gene001413.t1.exon1;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37410715 | 37410832 | 37410715 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37410932 | 37410997 | 37410932 | ID=MS.gene001413.t1.exon2;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37410932 | 37410997 | 37410932 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37411086 | 37411188 | 37411086 | ID=MS.gene001413.t1.exon3;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37411086 | 37411188 | 37411086 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37411669 | 37411743 | 37411669 | ID=MS.gene001413.t1.exon4;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37411669 | 37411743 | 37411669 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37412044 | 37412188 | 37412044 | ID=MS.gene001413.t1.exon5;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37412044 | 37412188 | 37412044 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37412277 | 37412346 | 37412277 | ID=MS.gene001413.t1.exon6;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37412277 | 37412346 | 37412277 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37412464 | 37412529 | 37412464 | ID=MS.gene001413.t1.exon7;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37412464 | 37412529 | 37412464 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37414186 | 37414308 | 37414186 | ID=MS.gene001413.t1.exon8;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37414186 | 37414308 | 37414186 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| chr2.4 | exon | 37414408 | 37414571 | 37414408 | ID=MS.gene001413.t1.exon9;Parent=MS.gene001413.t1 |
| chr2.4 | CDS | 37414408 | 37414571 | 37414408 | ID=cds.MS.gene001413.t1;Parent=MS.gene001413.t1 |
| Gene Sequence |
| Protein sequence |
