Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71436.t1 | XP_003590816.1 | 93 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 7.50E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71436.t1 | Q9ZS51 | 57.8 | 161 | 68 | 0 | 11 | 171 | 13 | 173 | 1.3e-53 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71436.t1 | G7I4T1 | 93.0 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 5.4e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057499 | MS.gene71436 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene058628 | MS.gene71436 | 0.806907 | 6.55E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002986 | MS.gene71436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71436.t1 | MTR_1g075540 | 92.982 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 1.03e-119 | 338 |
| MS.gene71436.t1 | MTR_1g075540 | 94.083 | 169 | 10 | 0 | 1 | 169 | 1 | 169 | 1.16e-118 | 335 |
| MS.gene71436.t1 | MTR_2g023850 | 56.140 | 171 | 75 | 0 | 1 | 171 | 1 | 171 | 3.55e-68 | 207 |
| MS.gene71436.t1 | MTR_8g103490 | 27.624 | 181 | 103 | 4 | 8 | 161 | 7 | 186 | 1.99e-14 | 70.1 |
| MS.gene71436.t1 | MTR_2g080040 | 28.824 | 170 | 115 | 5 | 9 | 175 | 177 | 343 | 8.75e-13 | 66.6 |
| MS.gene71436.t1 | MTR_1g008350 | 26.738 | 187 | 109 | 6 | 9 | 168 | 5 | 190 | 5.56e-12 | 63.2 |
| MS.gene71436.t1 | MTR_2g090155 | 23.737 | 198 | 147 | 3 | 9 | 204 | 123 | 318 | 6.82e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71436.t1 | AT4G14305 | 74.854 | 171 | 43 | 0 | 1 | 171 | 1 | 171 | 1.48e-99 | 287 |
| MS.gene71436.t1 | AT4G14305 | 76.056 | 142 | 34 | 0 | 30 | 171 | 18 | 159 | 4.17e-83 | 245 |
| MS.gene71436.t1 | AT4G04470 | 57.407 | 162 | 69 | 0 | 10 | 171 | 12 | 173 | 2.27e-69 | 211 |
| MS.gene71436.t1 | AT4G04470 | 57.407 | 162 | 69 | 0 | 10 | 171 | 12 | 173 | 2.27e-69 | 211 |
| MS.gene71436.t1 | AT5G43140 | 26.380 | 163 | 114 | 5 | 12 | 171 | 82 | 241 | 6.15e-12 | 63.5 |
| MS.gene71436.t1 | AT5G19750 | 24.138 | 174 | 128 | 4 | 12 | 184 | 118 | 288 | 4.95e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCATGAAGCCATATTTC+TGG | 0.259110 | 1.3:+53990723 | None:intergenic |
| AAAGTTTATCCATCAATAAA+TGG | 0.290399 | 1.3:+53993475 | None:intergenic |
| GCATTGCCTCCATCTCTTCC+AGG | 0.316011 | 1.3:+53990764 | None:intergenic |
| AGAAACAGTGGCCAGAAATA+TGG | 0.341091 | 1.3:-53990734 | MS.gene71436:CDS |
| GCTGTTGCACAGAAGCTTGC+TGG | 0.363029 | 1.3:-53993918 | MS.gene71436:CDS |
| ACATTATCTCCATTTATTGA+TGG | 0.376713 | 1.3:-53993484 | MS.gene71436:CDS |
| ATACCTTCCACGCCGTCAAC+TGG | 0.382299 | 1.3:+53992080 | None:intergenic |
| TTCGCCTATGCAGGACCCTT+TGG | 0.383790 | 1.3:-53993507 | MS.gene71436:CDS |
| TATTATGGCTTGATTATTGA+AGG | 0.419845 | 1.3:-53993208 | MS.gene71436:intron |
| CAATGAAACTGTTGCTAAGA+AGG | 0.429878 | 1.3:-53993436 | MS.gene71436:intron |
| GTTTACCAATTTGTAACTTG+TGG | 0.439692 | 1.3:+53990798 | None:intergenic |
| CTCTATGGTTTCGCCTATGC+AGG | 0.448355 | 1.3:-53993516 | MS.gene71436:CDS |
| CGCGATGACGTGCAACTGCT+AGG | 0.448900 | 1.3:-53990704 | MS.gene71436:CDS |
| ATTACTTCATCAGTTCTAGC+TGG | 0.466658 | 1.3:-53993951 | MS.gene71436:CDS |
| GGAACTGCAAAGGCATATAC+TGG | 0.477910 | 1.3:+53991934 | None:intergenic |
| CTATCCTACTGTCCAGTTGA+CGG | 0.478021 | 1.3:-53992092 | MS.gene71436:CDS |
| GGAAGAGATGGAGGCAATGC+CGG | 0.479844 | 1.3:-53990761 | MS.gene71436:CDS |
| CTGACAAAGTCAACGATGCT+TGG | 0.498624 | 1.3:-53994114 | MS.gene71436:CDS |
| CTGGCCACTGTTTCTTGCAC+CGG | 0.504213 | 1.3:+53990742 | None:intergenic |
| ACAGCTTTGTTGGTTCATGC+TGG | 0.506633 | 1.3:-53991899 | MS.gene71436:intron |
| GTTGGTTTGCAGGAAGACCT+TGG | 0.511703 | 1.3:-53992144 | MS.gene71436:intron |
| AGGGTAGACCCTGGAAGAGA+TGG | 0.526537 | 1.3:-53990773 | MS.gene71436:CDS |
| CATTGCCTCCATCTCTTCCA+GGG | 0.530724 | 1.3:+53990765 | None:intergenic |
| AAATGGAGATAATGTCCAAA+GGG | 0.531298 | 1.3:+53993492 | None:intergenic |
| AGCAAATAACTAGTTCTCCA+TGG | 0.534969 | 1.3:-53993252 | MS.gene71436:CDS |
| CTAAGAAGCTTCAGTTCAGA+AGG | 0.536401 | 1.3:-53993893 | MS.gene71436:CDS |
| GAGAACTAGTTATTTGCTCA+AGG | 0.536726 | 1.3:+53993257 | None:intergenic |
| TGTCCAGTTGACGGCGTGGA+AGG | 0.546675 | 1.3:-53992083 | MS.gene71436:intron |
| ATCGTTGACTTTGTCAGACA+TGG | 0.551719 | 1.3:+53994120 | None:intergenic |
| GAGGATGAAGCTTAAGCTGA+AGG | 0.563374 | 1.3:+53994080 | None:intergenic |
| GCGATGACGTGCAACTGCTA+GGG | 0.569045 | 1.3:-53990703 | MS.gene71436:CDS |
| TTGTTCATGACTATATTCCA+AGG | 0.574186 | 1.3:+53992127 | None:intergenic |
| ATGTCCAAAGGGTCCTGCAT+AGG | 0.576071 | 1.3:+53993503 | None:intergenic |
| GCTTCATCCTCTCAGAACCA+AGG | 0.597074 | 1.3:-53994068 | MS.gene71436:intron |
| CACGCCGTCAACTGGACAGT+AGG | 0.614091 | 1.3:+53992088 | None:intergenic |
| TAAATGGAGATAATGTCCAA+AGG | 0.616169 | 1.3:+53993491 | None:intergenic |
| TAATTCACCCAACCAACGAT+AGG | 0.618119 | 1.3:+53991957 | None:intergenic |
| AATAAAACACGGAACTGCAA+AGG | 0.621872 | 1.3:+53991924 | None:intergenic |
| GTAGACCCTGGAAGAGATGG+AGG | 0.628428 | 1.3:-53990770 | MS.gene71436:CDS |
| AGTTACAAATTGGTAAACTG+AGG | 0.632444 | 1.3:-53990793 | MS.gene71436:CDS |
| GTTACAAATTGGTAAACTGA+GGG | 0.643022 | 1.3:-53990792 | MS.gene71436:CDS |
| CTACTGTCCAGTTGACGGCG+TGG | 0.646340 | 1.3:-53992087 | MS.gene71436:CDS |
| AATGAAACCTTGGTTCTGAG+AGG | 0.655224 | 1.3:+53994061 | None:intergenic |
| AATGCCGGTGCAAGAAACAG+TGG | 0.669929 | 1.3:-53990746 | MS.gene71436:CDS |
| CAAAGCTGTGAAATAAAACA+CGG | 0.671747 | 1.3:+53991913 | None:intergenic |
| GGTAAACTGAGGGTAGACCC+TGG | 0.687786 | 1.3:-53990782 | MS.gene71436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATATAAAATTATTGA+TGG | + | chr1.3:53991062-53991081 | None:intergenic | 10.0% |
| !! | ATAATGATTATTGTAAACTT+AGG | + | chr1.3:53991952-53991971 | None:intergenic | 15.0% |
| !! | CAATTAATACTAAATATTAG+AGG | + | chr1.3:53991813-53991832 | None:intergenic | 15.0% |
| !! | GAAAACATTTATAGAATAAA+AGG | - | chr1.3:53992106-53992125 | MS.gene71436:CDS | 15.0% |
| !! | TAATGATTATTGTAAACTTA+GGG | + | chr1.3:53991951-53991970 | None:intergenic | 15.0% |
| !! | TAATGTCATATTTCTTATAA+AGG | - | chr1.3:53993094-53993113 | MS.gene71436:intron | 15.0% |
| !! | TCAAAATTATCAATGTTTAT+AGG | - | chr1.3:53991914-53991933 | MS.gene71436:CDS | 15.0% |
| !!! | TGAAAATTGTTTTTATTAAG+TGG | + | chr1.3:53992586-53992605 | None:intergenic | 15.0% |
| !! | AAAATAGTAAAATGAAACCT+TGG | + | chr1.3:53990761-53990780 | None:intergenic | 20.0% |
| !! | AAAGTTTATCCATCAATAAA+TGG | + | chr1.3:53991337-53991356 | None:intergenic | 20.0% |
| !! | AATTTAAGAAAGTAAGTACT+TGG | + | chr1.3:53992185-53992204 | None:intergenic | 20.0% |
| !! | ATAATGTATTATCAATAAGC+TGG | + | chr1.3:53992556-53992575 | None:intergenic | 20.0% |
| !! | ATGTGAAAATGCATTATTAT+AGG | + | chr1.3:53993598-53993617 | None:intergenic | 20.0% |
| !! | GAATGAAATATCATATTACT+AGG | - | chr1.3:53991525-53991544 | MS.gene71436:intron | 20.0% |
| !! | GCAATTAAAATTCAAATTGA+GGG | + | chr1.3:53993309-53993328 | None:intergenic | 20.0% |
| !! | TCATTATTTACAAGTCAATA+TGG | - | chr1.3:53991965-53991984 | MS.gene71436:CDS | 20.0% |
| !! | TGCAATTAAAATTCAAATTG+AGG | + | chr1.3:53993310-53993329 | None:intergenic | 20.0% |
| !! | TGTGAAAATGCATTATTATA+GGG | + | chr1.3:53993597-53993616 | None:intergenic | 20.0% |
| !! | TTAACATTGAATTTAATTCC+CGG | - | chr1.3:53992223-53992242 | MS.gene71436:intron | 20.0% |
| !!! | AATGTTGATCCTTTTATATT+GGG | - | chr1.3:53993140-53993159 | MS.gene71436:intron | 20.0% |
| !!! | ACATTGATAATTTTGAACTT+CGG | + | chr1.3:53991910-53991929 | None:intergenic | 20.0% |
| !!! | CAATTTGAATAGTTAGTTTT+TGG | - | chr1.3:53992790-53992809 | MS.gene71436:intron | 20.0% |
| !!! | GAAGTTATTATAAGTTGATT+TGG | - | chr1.3:53991217-53991236 | MS.gene71436:intron | 20.0% |
| !!! | GAATATTATTTTGAGTATGA+TGG | + | chr1.3:53993388-53993407 | None:intergenic | 20.0% |
| !!! | TAATGTTGATCCTTTTATAT+TGG | - | chr1.3:53993139-53993158 | MS.gene71436:intron | 20.0% |
| !!! | TCACAATTTTTACTTAATCA+AGG | + | chr1.3:53993249-53993268 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTTTCAATATTT+TGG | - | chr1.3:53993532-53993551 | MS.gene71436:intron | 20.0% |
| !!! | TTTTTGTTCATGATGTATTA+TGG | - | chr1.3:53991586-53991605 | MS.gene71436:intron | 20.0% |
| ! | AAATAACGATTAAGCATCAT+TGG | - | chr1.3:53993012-53993031 | MS.gene71436:intron | 25.0% |
| ! | AACTATTCAAATTGTTCCAT+TGG | + | chr1.3:53992784-53992803 | None:intergenic | 25.0% |
| ! | ACAGATAAATCATATTAGTC+GGG | + | chr1.3:53993722-53993741 | None:intergenic | 25.0% |
| ! | ACATTATCTCCATTTATTGA+TGG | - | chr1.3:53991325-53991344 | MS.gene71436:intron | 25.0% |
| ! | CAATCATATATTCATACTAG+TGG | + | chr1.3:53993791-53993810 | None:intergenic | 25.0% |
| ! | CACAGATAAATCATATTAGT+CGG | + | chr1.3:53993723-53993742 | None:intergenic | 25.0% |
| ! | CATGCACTATAAATTACAAA+AGG | - | chr1.3:53993061-53993080 | MS.gene71436:intron | 25.0% |
| ! | TACTTCAAATGCAACATAAT+AGG | + | chr1.3:53991875-53991894 | None:intergenic | 25.0% |
| ! | TATTATGGCTTGATTATTGA+AGG | - | chr1.3:53991601-53991620 | MS.gene71436:intron | 25.0% |
| ! | TTACCTTACAAGTATATGAA+GGG | - | chr1.3:53992151-53992170 | MS.gene71436:intron | 25.0% |
| ! | TTGTTCGCAATATCATATTA+AGG | + | chr1.3:53992079-53992098 | None:intergenic | 25.0% |
| !! | ATGATGCTTAATCGTTATTT+TGG | + | chr1.3:53993012-53993031 | None:intergenic | 25.0% |
| !! | TAGATGAAGTTTAAGCTTTT+TGG | - | chr1.3:53992473-53992492 | MS.gene71436:intron | 25.0% |
| !! | TTTTCATAAAACAAGTACCA+GGG | + | chr1.3:53991497-53991516 | None:intergenic | 25.0% |
| !! | TTTTTCATAAAACAAGTACC+AGG | + | chr1.3:53991498-53991517 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTCAATATTTTGG+AGG | - | chr1.3:53993535-53993554 | MS.gene71436:intron | 25.0% |
| !!! | ATTGATGGATAAACTTTTCA+AGG | - | chr1.3:53991340-53991359 | MS.gene71436:intron | 25.0% |
| !!! | GTTATTATAAGTTGATTTGG+TGG | - | chr1.3:53991220-53991239 | MS.gene71436:intron | 25.0% |
| !!! | TGAATTTTAATTGCACCATA+AGG | - | chr1.3:53993315-53993334 | MS.gene71436:intron | 25.0% |
| !!! | TTGAATAGTTAGTTTTTGGA+AGG | - | chr1.3:53992794-53992813 | MS.gene71436:intron | 25.0% |
| !!! | TTGATGGATAAACTTTTCAA+GGG | - | chr1.3:53991341-53991360 | MS.gene71436:intron | 25.0% |
| AAAATTGTGAAGATGCAATG+TGG | - | chr1.3:53993259-53993278 | MS.gene71436:CDS | 30.0% | |
| AAATGGAGATAATGTCCAAA+GGG | + | chr1.3:53991320-53991339 | None:intergenic | 30.0% | |
| AACCAAACTGAAATAGTGAA+GGG | - | chr1.3:53992362-53992381 | MS.gene71436:intron | 30.0% | |
| AATCCATTAGTGAGAAAAAG+AGG | - | chr1.3:53993873-53993892 | MS.gene71436:intron | 30.0% | |
| AGGATATTTCATTCTCTACT+AGG | - | chr1.3:53993555-53993574 | MS.gene71436:intron | 30.0% | |
| AGTTACAAATTGGTAAACTG+AGG | - | chr1.3:53994016-53994035 | MS.gene71436:intron | 30.0% | |
| ATCACAATATAGTTGAAAGC+CGG | + | chr1.3:53993167-53993186 | None:intergenic | 30.0% | |
| ATGAACAAAAAGTTGTTCCA+TGG | + | chr1.3:53991577-53991596 | None:intergenic | 30.0% | |
| CAAAGCTGTGAAATAAAACA+CGG | + | chr1.3:53992899-53992918 | None:intergenic | 30.0% | |
| CAGTACATATGTACATCATT+AGG | - | chr1.3:53993192-53993211 | MS.gene71436:intron | 30.0% | |
| CGACTAATATGATTTATCTG+TGG | - | chr1.3:53993721-53993740 | MS.gene71436:intron | 30.0% | |
| CTATTTATCCCTATAACCAA+AGG | + | chr1.3:53991435-53991454 | None:intergenic | 30.0% | |
| CTTACCTTACAAGTATATGA+AGG | - | chr1.3:53992150-53992169 | MS.gene71436:intron | 30.0% | |
| GCATTATTATAGGGAAAAGA+TGG | + | chr1.3:53993588-53993607 | None:intergenic | 30.0% | |
| GTCATAAATCTTCTTCTGTT+TGG | - | chr1.3:53992758-53992777 | MS.gene71436:intron | 30.0% | |
| GTTACAAATTGGTAAACTGA+GGG | - | chr1.3:53994017-53994036 | MS.gene71436:intron | 30.0% | |
| GTTTACCAATTTGTAACTTG+TGG | + | chr1.3:53994014-53994033 | None:intergenic | 30.0% | |
| TAAATGGAGATAATGTCCAA+AGG | + | chr1.3:53991321-53991340 | None:intergenic | 30.0% | |
| TACTATGTCCTTTGGTTATA+GGG | - | chr1.3:53991424-53991443 | MS.gene71436:intron | 30.0% | |
| TCATAATTAAAGTGTGAGGT+TGG | - | chr1.3:53992647-53992666 | MS.gene71436:intron | 30.0% | |
| TCTGCTTAATTCCTAAACTT+TGG | - | chr1.3:53991842-53991861 | MS.gene71436:intron | 30.0% | |
| TGCTTCATAATTAAAGTGTG+AGG | - | chr1.3:53992643-53992662 | MS.gene71436:intron | 30.0% | |
| TTGATTAAACTATGCAAGAG+TGG | + | chr1.3:53992436-53992455 | None:intergenic | 30.0% | |
| TTGTTCATGACTATATTCCA+AGG | + | chr1.3:53992685-53992704 | None:intergenic | 30.0% | |
| ! | AAAAGTTTTGCACCGAAATT+TGG | + | chr1.3:53992038-53992057 | None:intergenic | 30.0% |
| ! | AAACTCTAGAAATCTTCACA+AGG | - | chr1.3:53992331-53992350 | MS.gene71436:intron | 30.0% |
| ! | AAAGTTTTGCACCGAAATTT+GGG | + | chr1.3:53992037-53992056 | None:intergenic | 30.0% |
| ! | GAATGTCAATTCTGTTTTCT+TGG | + | chr1.3:53991791-53991810 | None:intergenic | 30.0% |
| ! | GTTTTCCACAAGTTACAAAT+TGG | - | chr1.3:53994006-53994025 | MS.gene71436:intron | 30.0% |
| ! | TAATTCCTAAACTTTGGTTC+TGG | - | chr1.3:53991848-53991867 | MS.gene71436:intron | 30.0% |
| !! | CAAATTATTTTGCAGCTCTA+TGG | - | chr1.3:53991278-53991297 | MS.gene71436:intron | 30.0% |
| !! | CTCACTAATGGATTAAATCA+TGG | + | chr1.3:53993867-53993886 | None:intergenic | 30.0% |
| !! | TGATGGATAAACTTTTCAAG+GGG | - | chr1.3:53991342-53991361 | MS.gene71436:intron | 30.0% |
| !! | TGTGTGTGTTTTGTTATGTT+AGG | - | chr1.3:53990833-53990852 | MS.gene71436:intron | 30.0% |
| !!! | ATTTTAATTGCACCATAAGG+TGG | - | chr1.3:53993318-53993337 | MS.gene71436:intron | 30.0% |
| !!! | GTTTTATTTCACAGCTTTGT+TGG | - | chr1.3:53992900-53992919 | MS.gene71436:intron | 30.0% |
| !!! | GTTTTTTGAACATGCAGTTT+TGG | - | chr1.3:53992829-53992848 | MS.gene71436:intron | 30.0% |
| AACGATTAAGCATCATTGGT+TGG | - | chr1.3:53993016-53993035 | MS.gene71436:intron | 35.0% | |
| AATAAAACACGGAACTGCAA+AGG | + | chr1.3:53992888-53992907 | None:intergenic | 35.0% | |
| ACATTGAATTTAATTCCCGG+AGG | - | chr1.3:53992226-53992245 | MS.gene71436:intron | 35.0% | |
| AGACCCTTCATATACTTGTA+AGG | + | chr1.3:53992157-53992176 | None:intergenic | 35.0% | |
| AGACCTTCTATCCCAAATTT+CGG | - | chr1.3:53992023-53992042 | MS.gene71436:intron | 35.0% | |
| ATTGTGTGTACTATGTCCTT+TGG | - | chr1.3:53991416-53991435 | MS.gene71436:intron | 35.0% | |
| CAATGAAACTGTTGCTAAGA+AGG | - | chr1.3:53991373-53991392 | MS.gene71436:intron | 35.0% | |
| CACATCTTGGTTATAGTCTT+GGG | + | chr1.3:53993928-53993947 | None:intergenic | 35.0% | |
| CAGTACAACTATACACGATT+TGG | + | chr1.3:53993423-53993442 | None:intergenic | 35.0% | |
| GAACCAAACTGAAATAGTGA+AGG | - | chr1.3:53992361-53992380 | MS.gene71436:intron | 35.0% | |
| GAGAACTAGTTATTTGCTCA+AGG | + | chr1.3:53991555-53991574 | None:intergenic | 35.0% | |
| GTACTATGTCCTTTGGTTAT+AGG | - | chr1.3:53991423-53991442 | MS.gene71436:intron | 35.0% | |
| TAACCAACATAAGTCACCAT+CGG | - | chr1.3:53993672-53993691 | MS.gene71436:intron | 35.0% | |
| TAAGCTGGAATTGTTTCATG+AGG | + | chr1.3:53992541-53992560 | None:intergenic | 35.0% | |
| TGATTTATGATCATTGTCCG+TGG | - | chr1.3:53993441-53993460 | MS.gene71436:CDS | 35.0% | |
| ! | AGCAAATAACTAGTTCTCCA+TGG | - | chr1.3:53991557-53991576 | MS.gene71436:intron | 35.0% |
| ! | ATGCCTACAATCAAAAGTGT+CGG | - | chr1.3:53991102-53991121 | MS.gene71436:intron | 35.0% |
| ! | ATGCCTCTTTTTCTCACTAA+TGG | + | chr1.3:53993879-53993898 | None:intergenic | 35.0% |
| ! | ATTACTTCATCAGTTCTAGC+TGG | - | chr1.3:53990858-53990877 | MS.gene71436:intron | 35.0% |
| ! | ATTCTGTTTTCTTGGTAGAG+AGG | + | chr1.3:53991783-53991802 | None:intergenic | 35.0% |
| ! | CAGAAGGATTCTTCTTTTCA+TGG | - | chr1.3:53990932-53990951 | MS.gene71436:intron | 35.0% |
| ! | CTCTAAGAACGATTGTTAGT+AGG | - | chr1.3:53993754-53993773 | MS.gene71436:intron | 35.0% |
| ! | GTATTTTGTGTTGTGTGATC+AGG | - | chr1.3:53991454-53991473 | MS.gene71436:intron | 35.0% |
| ! | TCTTGACTTTTGTCAAGTAC+TGG | - | chr1.3:53993481-53993500 | MS.gene71436:CDS | 35.0% |
| ! | TGAGTATGATGGAATAGTCT+CGG | + | chr1.3:53993377-53993396 | None:intergenic | 35.0% |
| ! | TGATCCTTTTATATTGGGTC+CGG | - | chr1.3:53993145-53993164 | MS.gene71436:intron | 35.0% |
| ! | TGGTGGTAGTTGAATTTTGA+AGG | - | chr1.3:53991237-53991256 | MS.gene71436:intron | 35.0% |
| ! | TTCCTTTTATTGCTTTCCTC+CGG | + | chr1.3:53992245-53992264 | None:intergenic | 35.0% |
| !! | AAACTTTTCAAGGGGAAGAA+AGG | - | chr1.3:53991350-53991369 | MS.gene71436:intron | 35.0% |
| !! | AGTTGAATTTTGAAGGTCTG+TGG | - | chr1.3:53991244-53991263 | MS.gene71436:intron | 35.0% |
| !! | CTTGTGGAAAACTGTTTTAG+TGG | + | chr1.3:53993998-53994017 | None:intergenic | 35.0% |
| !! | CTTTTGATTGTAGGCATGTT+CGG | + | chr1.3:53991099-53991118 | None:intergenic | 35.0% |
| !! | GTTGATAGTACTGTGAGTAT+AGG | - | chr1.3:53993038-53993057 | MS.gene71436:intron | 35.0% |
| AAACACCTACACGTATACAC+CGG | - | chr1.3:53991005-53991024 | MS.gene71436:intron | 40.0% | |
| AAAGCCGGACCCAATATAAA+AGG | + | chr1.3:53993152-53993171 | None:intergenic | 40.0% | |
| AACCAACATAAGTCACCATC+GGG | - | chr1.3:53993673-53993692 | MS.gene71436:intron | 40.0% | |
| AGAAACAGTGGCCAGAAATA+TGG | - | chr1.3:53994075-53994094 | MS.gene71436:CDS | 40.0% | |
| ATAACCAGAGAACCACCTTA+TGG | + | chr1.3:53993333-53993352 | None:intergenic | 40.0% | |
| ATCTTCTTCTGTTTGGCCAA+TGG | - | chr1.3:53992765-53992784 | MS.gene71436:intron | 40.0% | |
| CCAAGACTATAACCAAGATG+TGG | - | chr1.3:53993926-53993945 | MS.gene71436:CDS | 40.0% | |
| CCACATCTTGGTTATAGTCT+TGG | + | chr1.3:53993929-53993948 | None:intergenic | 40.0% | |
| CGATTGTTAGTAGGAAGAGA+AGG | - | chr1.3:53993763-53993782 | MS.gene71436:intron | 40.0% | |
| CTAAGAAGCTTCAGTTCAGA+AGG | - | chr1.3:53990916-53990935 | MS.gene71436:intron | 40.0% | |
| GAAACAAGTTTGACAACGCT+AGG | - | chr1.3:53993625-53993644 | MS.gene71436:intron | 40.0% | |
| GACCCTTCACTATTTCAGTT+TGG | + | chr1.3:53992367-53992386 | None:intergenic | 40.0% | |
| TAAAACAAGTACCAGGGCTA+AGG | + | chr1.3:53991491-53991510 | None:intergenic | 40.0% | |
| TAATTCACCCAACCAACGAT+AGG | + | chr1.3:53992855-53992874 | None:intergenic | 40.0% | |
| TAGGACCAGAACCAAAGTTT+AGG | + | chr1.3:53991856-53991875 | None:intergenic | 40.0% | |
| TGCATTTGTCTTCCACATCT+TGG | + | chr1.3:53993941-53993960 | None:intergenic | 40.0% | |
| TTAGGCCACTAAGATTGCTT+TGG | - | chr1.3:53993210-53993229 | MS.gene71436:CDS | 40.0% | |
| ! | ACGATTGTAACTTGCATCTC+AGG | - | chr1.3:53993965-53993984 | MS.gene71436:intron | 40.0% |
| ! | ATGGTGAATTCTTTTCCCAC+TGG | + | chr1.3:53993848-53993867 | None:intergenic | 40.0% |
| ! | TATGAAGCACTATGCAGTGA+AGG | + | chr1.3:53992632-53992651 | None:intergenic | 40.0% |
| ! | TCCTTTTATTGCTTTCCTCC+GGG | + | chr1.3:53992244-53992263 | None:intergenic | 40.0% |
| ! | TGTTTTCTTGGTAGAGAGGT+GGG | + | chr1.3:53991779-53991798 | None:intergenic | 40.0% |
| ! | TTCTATGTTTTCCTTAGCCC+TGG | - | chr1.3:53991477-53991496 | MS.gene71436:intron | 40.0% |
| !! | AATGAAACCTTGGTTCTGAG+AGG | + | chr1.3:53990751-53990770 | None:intergenic | 40.0% |
| CTATCCTACTGTCCAGTTGA+CGG | - | chr1.3:53992717-53992736 | MS.gene71436:intron | 45.0% | |
| CTGACAAAGTCAACGATGCT+TGG | - | chr1.3:53990695-53990714 | MS.gene71436:CDS | 45.0% | |
| GACAGCCAAAGCAATCTTAG+TGG | + | chr1.3:53993218-53993237 | None:intergenic | 45.0% | |
| GAGAATATCACGATGAGCCA+CGG | + | chr1.3:53993461-53993480 | None:intergenic | 45.0% | |
| GAGGATGAAGCTTAAGCTGA+AGG | + | chr1.3:53990732-53990751 | None:intergenic | 45.0% | |
| TCCCGGAGGAAAGCAATAAA+AGG | - | chr1.3:53992240-53992259 | MS.gene71436:intron | 45.0% | |
| TGATTGTCGACGGTAAGAGA+GGG | - | chr1.3:53993696-53993715 | MS.gene71436:intron | 45.0% | |
| ! | CTGTTTTCTTGGTAGAGAGG+TGG | + | chr1.3:53991780-53991799 | None:intergenic | 45.0% |
| ! | GCACCGAAATTTGGGATAGA+AGG | + | chr1.3:53992029-53992048 | None:intergenic | 45.0% |
| ! | GGAACTGCAAAGGCATATAC+TGG | + | chr1.3:53992878-53992897 | None:intergenic | 45.0% |
| ! | GGTTATAGTCTTGGGTATGC+TGG | + | chr1.3:53993920-53993939 | None:intergenic | 45.0% |
| !! | AAAGTGTGAGGTTGGTTTGC+AGG | - | chr1.3:53992655-53992674 | MS.gene71436:intron | 45.0% |
| !! | ACAGCTTTGTTGGTTCATGC+TGG | - | chr1.3:53992910-53992929 | MS.gene71436:intron | 45.0% |
| !! | AGTTTTGGCCTATCGTTGGT+TGG | - | chr1.3:53992844-53992863 | MS.gene71436:intron | 45.0% |
| !! | ATGCAGTTTTGGCCTATCGT+TGG | - | chr1.3:53992840-53992859 | MS.gene71436:intron | 45.0% |
| !! | ATTGTAGGCATGTTCGGTGT+TGG | + | chr1.3:53991093-53991112 | None:intergenic | 45.0% |
| !! | GCACCGACACTTTTGATTGT+AGG | + | chr1.3:53991108-53991127 | None:intergenic | 45.0% |
| !! | GTTTTGGCCTATCGTTGGTT+GGG | - | chr1.3:53992845-53992864 | MS.gene71436:intron | 45.0% |
| AATGCCGGTGCAAGAAACAG+TGG | - | chr1.3:53994063-53994082 | MS.gene71436:intron | 50.0% | |
| ATGTCCAAAGGGTCCTGCAT+AGG | + | chr1.3:53991309-53991328 | None:intergenic | 50.0% | |
| CACCCGATGGTGACTTATGT+TGG | + | chr1.3:53993678-53993697 | None:intergenic | 50.0% | |
| CATTGCCTCCATCTCTTCCA+GGG | + | chr1.3:53994047-53994066 | None:intergenic | 50.0% | |
| CGACAATGACACTGACAGGT+TGG | - | chr1.3:53991031-53991050 | MS.gene71436:intron | 50.0% | |
| CGCGCATGAAGCCATATTTC+TGG | + | chr1.3:53994089-53994108 | None:intergenic | 50.0% | |
| CTCTATGGTTTCGCCTATGC+AGG | - | chr1.3:53991293-53991312 | MS.gene71436:intron | 50.0% | |
| GACACGACAATGACACTGAC+AGG | - | chr1.3:53991027-53991046 | MS.gene71436:intron | 50.0% | |
| GCTTCATCCTCTCAGAACCA+AGG | - | chr1.3:53990741-53990760 | MS.gene71436:CDS | 50.0% | |
| GTGATTGTCGACGGTAAGAG+AGG | - | chr1.3:53993695-53993714 | MS.gene71436:intron | 50.0% | |
| TGCACCATAAGGTGGTTCTC+TGG | - | chr1.3:53993326-53993345 | MS.gene71436:intron | 50.0% | |
| TTTCCCACTGGCGATCATTG+AGG | + | chr1.3:53993836-53993855 | None:intergenic | 50.0% | |
| ! | GTCAGTGTCATTGTCGTGTC+CGG | + | chr1.3:53991027-53991046 | None:intergenic | 50.0% |
| !! | GGTGGGTTACACAACACAAG+AGG | + | chr1.3:53991762-53991781 | None:intergenic | 50.0% |
| !! | GTTGGTTTGCAGGAAGACCT+TGG | - | chr1.3:53992665-53992684 | MS.gene71436:intron | 50.0% |
| ACCACCTCAATGATCGCCAG+TGG | - | chr1.3:53993829-53993848 | MS.gene71436:intron | 55.0% | |
| AGGGTAGACCCTGGAAGAGA+TGG | - | chr1.3:53994036-53994055 | MS.gene71436:intron | 55.0% | |
| ATACCTTCCACGCCGTCAAC+TGG | + | chr1.3:53992732-53992751 | None:intergenic | 55.0% | |
| CACCATCGGGTGATTGTCGA+CGG | - | chr1.3:53993686-53993705 | MS.gene71436:intron | 55.0% | |
| CCACCTCAATGATCGCCAGT+GGG | - | chr1.3:53993830-53993849 | MS.gene71436:intron | 55.0% | |
| CGTGTCCGGTGTATACGTGT+AGG | + | chr1.3:53991013-53991032 | None:intergenic | 55.0% | |
| GCATTGCCTCCATCTCTTCC+AGG | + | chr1.3:53994048-53994067 | None:intergenic | 55.0% | |
| GCGATGACGTGCAACTGCTA+GGG | - | chr1.3:53994106-53994125 | MS.gene71436:CDS | 55.0% | |
| GCTGTTGCACAGAAGCTTGC+TGG | - | chr1.3:53990891-53990910 | MS.gene71436:intron | 55.0% | |
| GGAAGAGATGGAGGCAATGC+CGG | - | chr1.3:53994048-53994067 | MS.gene71436:intron | 55.0% | |
| GGTAAACTGAGGGTAGACCC+TGG | - | chr1.3:53994027-53994046 | MS.gene71436:intron | 55.0% | |
| GTAGACCCTGGAAGAGATGG+AGG | - | chr1.3:53994039-53994058 | MS.gene71436:intron | 55.0% | |
| TACCGTCGACAATCACCCGA+TGG | + | chr1.3:53993691-53993710 | None:intergenic | 55.0% | |
| TTCGCCTATGCAGGACCCTT+TGG | - | chr1.3:53991302-53991321 | MS.gene71436:intron | 55.0% | |
| ! | CTGGCCACTGTTTCTTGCAC+CGG | + | chr1.3:53994070-53994089 | None:intergenic | 55.0% |
| CACGCCGTCAACTGGACAGT+AGG | + | chr1.3:53992724-53992743 | None:intergenic | 60.0% | |
| CCCACTGGCGATCATTGAGG+TGG | + | chr1.3:53993833-53993852 | None:intergenic | 60.0% | |
| CGCGATGACGTGCAACTGCT+AGG | - | chr1.3:53994105-53994124 | MS.gene71436:CDS | 60.0% | |
| CTACTGTCCAGTTGACGGCG+TGG | - | chr1.3:53992722-53992741 | MS.gene71436:intron | 60.0% | |
| TGTCCAGTTGACGGCGTGGA+AGG | - | chr1.3:53992726-53992745 | MS.gene71436:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 53990691 | 53994140 | 53990691 | ID=MS.gene71436 |
| chr1.3 | mRNA | 53990691 | 53994140 | 53990691 | ID=MS.gene71436.t1;Parent=MS.gene71436 |
| chr1.3 | exon | 53994069 | 53994140 | 53994069 | ID=MS.gene71436.t1.exon1;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53994069 | 53994140 | 53994069 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53993878 | 53993976 | 53993878 | ID=MS.gene71436.t1.exon2;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53993878 | 53993976 | 53993878 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53993437 | 53993538 | 53993437 | ID=MS.gene71436.t1.exon3;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53993437 | 53993538 | 53993437 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53993209 | 53993284 | 53993209 | ID=MS.gene71436.t1.exon4;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53993209 | 53993284 | 53993209 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53992084 | 53992154 | 53992084 | ID=MS.gene71436.t1.exon5;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53992084 | 53992154 | 53992084 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53991900 | 53991985 | 53991900 | ID=MS.gene71436.t1.exon6;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53991900 | 53991985 | 53991900 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| chr1.3 | exon | 53990691 | 53990844 | 53990691 | ID=MS.gene71436.t1.exon7;Parent=MS.gene71436.t1 |
| chr1.3 | CDS | 53990691 | 53990844 | 53990691 | ID=cds.MS.gene71436.t1;Parent=MS.gene71436.t1 |
| Gene Sequence |
| Protein sequence |
