Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003125.t1 | XP_024631606.1 | 91.3 | 333 | 29 | 0 | 1 | 333 | 1 | 333 | 4.10E-172 | 614 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003125.t1 | Q94B74 | 59.5 | 274 | 109 | 1 | 59 | 332 | 7 | 278 | 1.0e-91 | 338.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003125.t1 | A0A396J454 | 91.3 | 333 | 29 | 0 | 1 | 333 | 1 | 333 | 3.0e-172 | 614.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene003125 | MS.gene94957 | PPI |
MS.gene04304 | MS.gene003125 | PPI |
MS.gene003125 | MS.gene05654 | PPI |
MS.gene003125 | MS.gene04190 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003125.t1 | MTR_2g026715 | 88.589 | 333 | 25 | 1 | 1 | 333 | 1 | 320 | 0.0 | 615 |
MS.gene003125.t1 | MTR_2g026715 | 93.966 | 232 | 14 | 0 | 1 | 232 | 1 | 232 | 2.33e-164 | 457 |
MS.gene003125.t1 | MTR_4g133945 | 72.302 | 278 | 71 | 4 | 59 | 333 | 3 | 277 | 1.05e-149 | 422 |
MS.gene003125.t1 | MTR_3g460790 | 58.303 | 271 | 113 | 0 | 62 | 332 | 16 | 286 | 1.37e-115 | 336 |
MS.gene003125.t1 | MTR_8g091995 | 59.449 | 254 | 100 | 2 | 72 | 324 | 19 | 270 | 1.34e-110 | 323 |
MS.gene003125.t1 | MTR_3g082770 | 51.953 | 256 | 121 | 1 | 71 | 326 | 80 | 333 | 2.35e-103 | 307 |
MS.gene003125.t1 | MTR_4g100480 | 48.201 | 278 | 143 | 1 | 56 | 332 | 76 | 353 | 1.18e-94 | 285 |
MS.gene003125.t1 | MTR_3g460790 | 61.611 | 211 | 81 | 0 | 62 | 272 | 16 | 226 | 1.74e-93 | 278 |
MS.gene003125.t1 | MTR_0446s0020 | 65.152 | 66 | 22 | 1 | 269 | 333 | 2 | 67 | 1.97e-24 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene003125.t1 | AT5G47650 | 61.450 | 262 | 99 | 1 | 71 | 332 | 19 | 278 | 9.58e-121 | 349 |
MS.gene003125.t1 | AT5G47650 | 61.450 | 262 | 99 | 1 | 71 | 332 | 19 | 278 | 9.58e-121 | 349 |
MS.gene003125.t1 | AT5G47650 | 61.450 | 262 | 99 | 1 | 71 | 332 | 19 | 278 | 9.58e-121 | 349 |
MS.gene003125.t1 | AT5G47650 | 61.450 | 262 | 99 | 1 | 71 | 332 | 65 | 324 | 7.25e-120 | 348 |
MS.gene003125.t1 | AT5G47650 | 61.450 | 262 | 99 | 1 | 71 | 332 | 66 | 325 | 7.26e-120 | 348 |
MS.gene003125.t1 | AT4G25434 | 56.420 | 257 | 112 | 0 | 70 | 326 | 18 | 274 | 5.25e-105 | 309 |
MS.gene003125.t1 | AT4G25434 | 54.864 | 257 | 111 | 1 | 70 | 326 | 18 | 269 | 1.57e-99 | 295 |
MS.gene003125.t1 | AT4G25434 | 51.408 | 284 | 111 | 1 | 70 | 326 | 18 | 301 | 2.04e-99 | 296 |
MS.gene003125.t1 | AT4G12720 | 50.746 | 268 | 129 | 3 | 65 | 330 | 4 | 270 | 4.98e-96 | 286 |
MS.gene003125.t1 | AT4G12720 | 50.746 | 268 | 129 | 3 | 65 | 330 | 4 | 270 | 4.98e-96 | 286 |
MS.gene003125.t1 | AT4G12720 | 50.746 | 268 | 129 | 3 | 65 | 330 | 4 | 270 | 4.98e-96 | 286 |
MS.gene003125.t1 | AT4G25434 | 50.000 | 284 | 110 | 2 | 70 | 326 | 18 | 296 | 6.98e-94 | 281 |
MS.gene003125.t1 | AT5G47240 | 49.064 | 267 | 134 | 2 | 60 | 324 | 84 | 350 | 1.08e-90 | 276 |
MS.gene003125.t1 | AT4G12720 | 44.156 | 308 | 129 | 4 | 65 | 330 | 4 | 310 | 4.66e-88 | 267 |
MS.gene003125.t1 | AT4G25434 | 61.809 | 199 | 76 | 0 | 70 | 268 | 18 | 216 | 2.02e-87 | 262 |
MS.gene003125.t1 | AT2G04450 | 47.940 | 267 | 135 | 4 | 63 | 326 | 2 | 267 | 1.06e-85 | 260 |
MS.gene003125.t1 | AT5G47240 | 44.595 | 296 | 133 | 3 | 60 | 324 | 84 | 379 | 7.34e-85 | 261 |
MS.gene003125.t1 | AT4G25434 | 54.867 | 226 | 75 | 1 | 70 | 268 | 18 | 243 | 3.44e-82 | 249 |
MS.gene003125.t1 | AT4G25434 | 59.799 | 199 | 75 | 1 | 70 | 268 | 18 | 211 | 4.18e-82 | 248 |
MS.gene003125.t1 | AT4G25434 | 56.853 | 197 | 85 | 0 | 130 | 326 | 33 | 229 | 3.76e-80 | 244 |
MS.gene003125.t1 | AT4G25434 | 56.853 | 197 | 85 | 0 | 130 | 326 | 33 | 229 | 3.76e-80 | 244 |
MS.gene003125.t1 | AT2G04430 | 46.502 | 243 | 125 | 3 | 68 | 305 | 7 | 249 | 3.94e-79 | 243 |
MS.gene003125.t1 | AT2G04430 | 46.502 | 243 | 125 | 3 | 68 | 305 | 26 | 268 | 9.70e-79 | 243 |
MS.gene003125.t1 | AT4G12720 | 55.446 | 202 | 88 | 2 | 65 | 264 | 4 | 205 | 2.71e-78 | 239 |
MS.gene003125.t1 | AT4G25434 | 54.822 | 197 | 84 | 1 | 130 | 326 | 33 | 224 | 1.36e-74 | 229 |
MS.gene003125.t1 | AT4G25434 | 59.763 | 169 | 68 | 0 | 70 | 238 | 18 | 186 | 4.14e-70 | 218 |
MS.gene003125.t1 | AT4G25434 | 49.282 | 209 | 79 | 1 | 145 | 326 | 1 | 209 | 6.64e-66 | 207 |
MS.gene003125.t1 | AT4G25434 | 52.041 | 196 | 67 | 1 | 70 | 238 | 18 | 213 | 9.60e-65 | 205 |
MS.gene003125.t1 | AT4G12720 | 50.000 | 188 | 91 | 3 | 145 | 330 | 1 | 187 | 1.42e-61 | 195 |
MS.gene003125.t1 | AT2G04440 | 46.259 | 147 | 75 | 2 | 63 | 206 | 2 | 147 | 8.23e-44 | 150 |
Find 67 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACACAAGCATTAAATATTT+TGG | 0.133502 | 2.1:-63576904 | None:intergenic |
GGAAAATAGTGGACTATTTC+AGG | 0.142281 | 2.1:+63577418 | MS.gene003125:CDS |
ATAGGTTGATTCAGAATTTC+TGG | 0.172583 | 2.1:+63577716 | MS.gene003125:intron |
GGAATAGTATTTGGACTTTC+AGG | 0.173194 | 2.1:-63576934 | None:intergenic |
TGCAAGATAACGAGAATTAT+TGG | 0.203640 | 2.1:-63575946 | None:intergenic |
GCATTTGCAGGAATAGTATT+TGG | 0.212021 | 2.1:-63576943 | None:intergenic |
GAGAAGATAATTGAGAATTT+TGG | 0.234530 | 2.1:-63575918 | None:intergenic |
ACTTCAAAATATCAGTCTTT+TGG | 0.252432 | 2.1:-63578698 | None:intergenic |
AAGATGGATGGGCGATATTC+TGG | 0.271028 | 2.1:+63578744 | MS.gene003125:CDS |
ATCTTAGGTACTAGTTGTTC+AGG | 0.284024 | 2.1:+63577397 | MS.gene003125:intron |
TTCTGGAAGTATTAGCATTC+AGG | 0.309877 | 2.1:+63577733 | MS.gene003125:CDS |
TATTTCAGGGAACTGGAGTT+TGG | 0.329206 | 2.1:+63577432 | MS.gene003125:CDS |
AATATTTAATGCTTGTGTAT+TGG | 0.331420 | 2.1:+63576908 | MS.gene003125:CDS |
CGATATTTGTTTGGCTAAGA+TGG | 0.346862 | 2.1:+63578728 | MS.gene003125:CDS |
TGCAGGGCAAGAAGGGAGTT+TGG | 0.356585 | 2.1:+63576685 | MS.gene003125:intron |
GTATATGAACGATATTTGTT+TGG | 0.375418 | 2.1:+63578719 | MS.gene003125:CDS |
ACCCTGTGTGTGGCATTTGC+AGG | 0.375917 | 2.1:-63576955 | None:intergenic |
AAGTTTGATAATGTAGATAC+TGG | 0.404746 | 2.1:-63578774 | None:intergenic |
AGTGGACTATTTCAGGGAAC+TGG | 0.415432 | 2.1:+63577425 | MS.gene003125:CDS |
AGTGCAGAGGTCAGAGATAG+AGG | 0.417005 | 2.1:+63578103 | MS.gene003125:CDS |
ACATCAACCGATGATAAGTA+TGG | 0.442025 | 2.1:+63576236 | MS.gene003125:CDS |
CTTCAGCAAGACCGACTAGA+TGG | 0.444644 | 2.1:-63576722 | None:intergenic |
CCCTACTGGAGTTGTTGATC+AGG | 0.445398 | 2.1:+63577460 | MS.gene003125:CDS |
CACTAAGATCTCAGACGAAA+GGG | 0.462404 | 2.1:-63578084 | None:intergenic |
ATTAAAACACCCACTTCAAA+AGG | 0.462920 | 2.1:+63576014 | MS.gene003125:CDS |
GCAGTTGACATGCATCGAAT+AGG | 0.468117 | 2.1:-63576179 | None:intergenic |
CAATAGTGTTACCTTAACTA+AGG | 0.470543 | 2.1:-63576745 | None:intergenic |
TGTGGAAGTGGATCAGCCTA+TGG | 0.485922 | 2.1:+63576268 | MS.gene003125:CDS |
ATTTGTTTGGCTAAGATGGA+TGG | 0.489246 | 2.1:+63578732 | MS.gene003125:CDS |
GTCAGAGATAGAGGGTGCAC+AGG | 0.494835 | 2.1:+63578112 | MS.gene003125:CDS |
TAAATCTGACTTCTCAAAGA+AGG | 0.503504 | 2.1:-63578039 | None:intergenic |
GGAGTTTGGAAATTCCCTAC+TGG | 0.504272 | 2.1:+63577446 | MS.gene003125:CDS |
TGGCGGCGTTATTGTGGAAG+TGG | 0.506390 | 2.1:+63576256 | MS.gene003125:CDS |
GAAAATAGTGGACTATTTCA+GGG | 0.507425 | 2.1:+63577419 | MS.gene003125:CDS |
CTAGTTGTTCAGGAAAATAG+TGG | 0.509297 | 2.1:+63577407 | MS.gene003125:CDS |
GTTGTCTTGCAGGGCAAGAA+GGG | 0.510569 | 2.1:+63576678 | MS.gene003125:intron |
ACTGCAGTGGATGCCATTTG+TGG | 0.515009 | 2.1:+63578653 | MS.gene003125:intron |
TCTTGCTGAAGCCTTAGTTA+AGG | 0.518721 | 2.1:+63576734 | MS.gene003125:CDS |
TGTTGTCTTGCAGGGCAAGA+AGG | 0.521293 | 2.1:+63576677 | MS.gene003125:intron |
AGAGAGGTCAAAGAAGAGAC+AGG | 0.538041 | 2.1:+63577598 | MS.gene003125:CDS |
TGAGACGCGTATTCCACAAA+TGG | 0.538269 | 2.1:-63578666 | None:intergenic |
TATTCTTTATGTGTATGTTG+CGG | 0.538500 | 2.1:+63578060 | MS.gene003125:CDS |
TGAATGCTGAAGCATTGAAA+AGG | 0.540603 | 2.1:+63578823 | MS.gene003125:CDS |
GCCACACACAGGGTTGGCAT+TGG | 0.540943 | 2.1:+63576964 | MS.gene003125:CDS |
TTTGTTTGGCTAAGATGGAT+GGG | 0.543258 | 2.1:+63578733 | MS.gene003125:CDS |
GTGCAGAGGTCAGAGATAGA+GGG | 0.578452 | 2.1:+63578104 | MS.gene003125:CDS |
AAATTACCTATCCATCTAGT+CGG | 0.581467 | 2.1:+63576711 | MS.gene003125:CDS |
GCACTAAGATCTCAGACGAA+AGG | 0.589071 | 2.1:-63578085 | None:intergenic |
GCAAGACCGACTAGATGGAT+AGG | 0.593880 | 2.1:-63576717 | None:intergenic |
ACCTGATCAACAACTCCAGT+AGG | 0.596031 | 2.1:-63577461 | None:intergenic |
TTCCTGCAAATGCCACACAC+AGG | 0.601163 | 2.1:+63576953 | MS.gene003125:CDS |
TAAGTATGGCGGCGTTATTG+TGG | 0.606216 | 2.1:+63576250 | MS.gene003125:CDS |
CCTGATCAACAACTCCAGTA+GGG | 0.608982 | 2.1:-63577460 | None:intergenic |
GCAAATGCCACACACAGGGT+TGG | 0.610645 | 2.1:+63576958 | MS.gene003125:CDS |
TTATATCTTCATGTAGAACA+AGG | 0.611389 | 2.1:+63575985 | MS.gene003125:CDS |
TCCTGCAAATGCCACACACA+GGG | 0.616524 | 2.1:+63576954 | MS.gene003125:CDS |
CGTCTGAGATCTTAGTGCAG+AGG | 0.620103 | 2.1:+63578090 | MS.gene003125:CDS |
ACGAATGTAGTCGAATCCAT+AGG | 0.621160 | 2.1:-63576284 | None:intergenic |
TTGTGTAGCAGCGGTAAGAG+AGG | 0.623662 | 2.1:+63577582 | MS.gene003125:CDS |
TAAGATTGGAGTGTCATCCA+CGG | 0.636159 | 2.1:+63576154 | MS.gene003125:CDS |
AGAAGATATTTGTGTAGCAG+CGG | 0.644894 | 2.1:+63577573 | MS.gene003125:CDS |
ACTAAGATCTCAGACGAAAG+GGG | 0.650300 | 2.1:-63578083 | None:intergenic |
AACGCCGCCATACTTATCAT+CGG | 0.651332 | 2.1:-63576243 | None:intergenic |
ACCAATGCCAACCCTGTGTG+TGG | 0.684168 | 2.1:-63576965 | None:intergenic |
TATTCGATGCATGTCAACTG+CGG | 0.685431 | 2.1:+63576181 | MS.gene003125:CDS |
CATGCATCGAATAGGAACCG+TGG | 0.694483 | 2.1:-63576171 | None:intergenic |
TCAACCGATGATAAGTATGG+CGG | 0.745097 | 2.1:+63576239 | MS.gene003125:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTATCAATGATTGAAAA+AGG | + | chr2.1:63577774-63577793 | MS.gene003125:intron | 15.0% |
!! | TATTATCAATGATTGAAAAA+GGG | + | chr2.1:63577775-63577794 | MS.gene003125:intron | 15.0% |
!!! | ACACTTTTTTCTATAAATAA+AGG | - | chr2.1:63577250-63577269 | None:intergenic | 15.0% |
!!! | TAATGATATGATATCATTTT+AGG | - | chr2.1:63578391-63578410 | None:intergenic | 15.0% |
!!! | TTTAAAATGTTCAATACTTA+TGG | + | chr2.1:63578182-63578201 | MS.gene003125:intron | 15.0% |
!! | AATATTTAATGCTTGTGTAT+TGG | + | chr2.1:63576908-63576927 | MS.gene003125:CDS | 20.0% |
!! | ACAATTGAGTTATTTATGTT+TGG | + | chr2.1:63576558-63576577 | MS.gene003125:intron | 20.0% |
!! | ATATCATCATATACAAAAAC+AGG | - | chr2.1:63577512-63577531 | None:intergenic | 20.0% |
!! | ATGATATTAGCCAAAAAAAA+TGG | - | chr2.1:63577846-63577865 | None:intergenic | 20.0% |
!! | ATTATCAATGATTGAAAAAG+GGG | + | chr2.1:63577776-63577795 | MS.gene003125:intron | 20.0% |
!! | ATTGCTTACCATATTAATAA+TGG | + | chr2.1:63576764-63576783 | MS.gene003125:intron | 20.0% |
!!! | ATGATATCATTTTAGGTTTT+AGG | - | chr2.1:63578384-63578403 | None:intergenic | 20.0% |
!!! | ATTATTTCTTTAAAGTTTCC+TGG | + | chr2.1:63577936-63577955 | MS.gene003125:intron | 20.0% |
!!! | TACACAAGCATTAAATATTT+TGG | - | chr2.1:63576907-63576926 | None:intergenic | 20.0% |
!!! | TGTTTATGATGATTATGTTT+TGG | + | chr2.1:63576052-63576071 | MS.gene003125:intron | 20.0% |
!!! | TTTTTCTATAAATAAAGGAG+AGG | - | chr2.1:63577245-63577264 | None:intergenic | 20.0% |
! | AAATGCATAAAATTGATGCA+TGG | - | chr2.1:63576838-63576857 | None:intergenic | 25.0% |
! | ACTATCTTAGATCCATTATT+TGG | + | chr2.1:63578210-63578229 | MS.gene003125:intron | 25.0% |
! | AGAAATAAACAAATGTTCCA+AGG | - | chr2.1:63577890-63577909 | None:intergenic | 25.0% |
! | ATCAATGAATGCAATCAAAT+AGG | - | chr2.1:63576389-63576408 | None:intergenic | 25.0% |
! | CAACAGAACCATTATTAATA+TGG | - | chr2.1:63576775-63576794 | None:intergenic | 25.0% |
! | CTACTTATTTAACCTATACA+GGG | + | chr2.1:63577550-63577569 | MS.gene003125:intron | 25.0% |
! | GAAGTTTGGTTAATGAAAAT+TGG | + | chr2.1:63576796-63576815 | MS.gene003125:intron | 25.0% |
! | GTATATGAACGATATTTGTT+TGG | + | chr2.1:63578719-63578738 | MS.gene003125:CDS | 25.0% |
! | GTTCATTATCTGAATTTACA+CGG | + | chr2.1:63577333-63577352 | MS.gene003125:intron | 25.0% |
! | TAATCAAGCTTGTAGTTAAT+TGG | + | chr2.1:63577049-63577068 | MS.gene003125:intron | 25.0% |
! | TAGTATTTACGTGTTTAGTT+AGG | + | chr2.1:63578502-63578521 | MS.gene003125:intron | 25.0% |
! | TATTCTTTATGTGTATGTTG+CGG | + | chr2.1:63578060-63578079 | MS.gene003125:CDS | 25.0% |
! | TGAAAAATGCATGATGAAAT+AGG | + | chr2.1:63576422-63576441 | MS.gene003125:intron | 25.0% |
! | TTATATCTTCATGTAGAACA+AGG | + | chr2.1:63575985-63576004 | MS.gene003125:CDS | 25.0% |
! | TTGAGTTATTTATGTTTGGA+TGG | + | chr2.1:63576562-63576581 | MS.gene003125:intron | 25.0% |
!! | AATGATAATGTCGTGTAAAT+TGG | + | chr2.1:63577141-63577160 | MS.gene003125:intron | 25.0% |
!! | ACTTCAAAATATCAGTCTTT+TGG | - | chr2.1:63578701-63578720 | None:intergenic | 25.0% |
!! | ATGATAATGTCGTGTAAATT+GGG | + | chr2.1:63577142-63577161 | MS.gene003125:intron | 25.0% |
!! | GAGAAGATAATTGAGAATTT+TGG | - | chr2.1:63575921-63575940 | None:intergenic | 25.0% |
!! | TTGTTTAGAATTTAATAGCG+AGG | - | chr2.1:63577024-63577043 | None:intergenic | 25.0% |
!! | TTTTCCTTACTAGTTAAGAT+TGG | + | chr2.1:63576140-63576159 | MS.gene003125:intron | 25.0% |
!!! | AAGTTTGATAATGTAGATAC+TGG | - | chr2.1:63578777-63578796 | None:intergenic | 25.0% |
!!! | ATCTGTCACGAATTTTTTAT+TGG | + | chr2.1:63576640-63576659 | MS.gene003125:intron | 25.0% |
!!! | ATGGTTTTACTCTAAATGTT+TGG | + | chr2.1:63576581-63576600 | MS.gene003125:intron | 25.0% |
!!! | ATTGACATGTCCATTTTTTT+TGG | + | chr2.1:63577833-63577852 | MS.gene003125:intron | 25.0% |
!!! | CTTGGTTCTTTCAATTTTAT+AGG | + | chr2.1:63577698-63577717 | MS.gene003125:intron | 25.0% |
!!! | TTATAGAAAAAAGTGTCGAA+TGG | + | chr2.1:63577254-63577273 | MS.gene003125:intron | 25.0% |
AAATTACCTATCCATCTAGT+CGG | + | chr2.1:63576711-63576730 | MS.gene003125:CDS | 30.0% | |
ATTAAAACACCCACTTCAAA+AGG | + | chr2.1:63576014-63576033 | MS.gene003125:CDS | 30.0% | |
CAATAGTGTTACCTTAACTA+AGG | - | chr2.1:63576748-63576767 | None:intergenic | 30.0% | |
CCTACTTATTTAACCTATAC+AGG | + | chr2.1:63577549-63577568 | MS.gene003125:intron | 30.0% | |
CCTGTATAGGTTAAATAAGT+AGG | - | chr2.1:63577552-63577571 | None:intergenic | 30.0% | |
CTAGTGTATTTGGATCATTT+AGG | + | chr2.1:63577204-63577223 | MS.gene003125:intron | 30.0% | |
GTGACAAGAAATAAGATATG+TGG | - | chr2.1:63577303-63577322 | None:intergenic | 30.0% | |
TAAATCAATGTTGTCTTGCA+GGG | + | chr2.1:63576669-63576688 | MS.gene003125:intron | 30.0% | |
TAAATCTGACTTCTCAAAGA+AGG | - | chr2.1:63578042-63578061 | None:intergenic | 30.0% | |
TGAAAGAAGAAAAGAATGCT+TGG | - | chr2.1:63577985-63578004 | None:intergenic | 30.0% | |
TGCAAGATAACGAGAATTAT+TGG | - | chr2.1:63575949-63575968 | None:intergenic | 30.0% | |
TGGCTAATATCATTGTCTAT+GGG | + | chr2.1:63577853-63577872 | MS.gene003125:intron | 30.0% | |
TTGGCTAATATCATTGTCTA+TGG | + | chr2.1:63577852-63577871 | MS.gene003125:intron | 30.0% | |
TTTACGATTCTTTCTATGAC+AGG | + | chr2.1:63576855-63576874 | MS.gene003125:intron | 30.0% | |
! | AACACGTAAATACTAGCTTA+AGG | - | chr2.1:63578497-63578516 | None:intergenic | 30.0% |
! | ACACGTAAATACTAGCTTAA+GGG | - | chr2.1:63578496-63578515 | None:intergenic | 30.0% |
! | CATTGCTATTCATTGATCTT+AGG | + | chr2.1:63577382-63577401 | MS.gene003125:intron | 30.0% |
! | GATTTTACATTGGAAGCAAA+TGG | + | chr2.1:63576325-63576344 | MS.gene003125:CDS | 30.0% |
! | TTAGAGCTTCGATTTTACAT+TGG | + | chr2.1:63576315-63576334 | MS.gene003125:CDS | 30.0% |
!! | ATAGGTTGATTCAGAATTTC+TGG | + | chr2.1:63577716-63577735 | MS.gene003125:intron | 30.0% |
!! | GAAAATAGTGGACTATTTCA+GGG | + | chr2.1:63577419-63577438 | MS.gene003125:CDS | 30.0% |
!!! | TTAAATATTTTGGTTCTGCG+TGG | - | chr2.1:63576897-63576916 | None:intergenic | 30.0% |
AAGAACCAAGAGTTAAATGC+CGG | - | chr2.1:63577688-63577707 | None:intergenic | 35.0% | |
ACATCAACCGATGATAAGTA+TGG | + | chr2.1:63576236-63576255 | MS.gene003125:CDS | 35.0% | |
ACGACATTATCATTCTACCA+AGG | - | chr2.1:63577135-63577154 | None:intergenic | 35.0% | |
AGAAGATATTTGTGTAGCAG+CGG | + | chr2.1:63577573-63577592 | MS.gene003125:CDS | 35.0% | |
ATCTTAGGTACTAGTTGTTC+AGG | + | chr2.1:63577397-63577416 | MS.gene003125:intron | 35.0% | |
ATTCTACCAAGGTACAAGAT+AGG | - | chr2.1:63577124-63577143 | None:intergenic | 35.0% | |
ATTTGTTTGGCTAAGATGGA+TGG | + | chr2.1:63578732-63578751 | MS.gene003125:CDS | 35.0% | |
CAAATATCTTCTCCCTGTAT+AGG | - | chr2.1:63577565-63577584 | None:intergenic | 35.0% | |
CACTCCAATCTTAACTAGTA+AGG | - | chr2.1:63576147-63576166 | None:intergenic | 35.0% | |
CGATATTTGTTTGGCTAAGA+TGG | + | chr2.1:63578728-63578747 | MS.gene003125:CDS | 35.0% | |
CTAGTTGTTCAGGAAAATAG+TGG | + | chr2.1:63577407-63577426 | MS.gene003125:CDS | 35.0% | |
CTATAAATAAAGGAGAGGCA+AGG | - | chr2.1:63577240-63577259 | None:intergenic | 35.0% | |
CTTCAAAAGGTAGTTGCTTA+AGG | + | chr2.1:63576027-63576046 | MS.gene003125:intron | 35.0% | |
GAAGAATTGATATCTCCCTA+AGG | - | chr2.1:63578621-63578640 | None:intergenic | 35.0% | |
GCATTTGCAGGAATAGTATT+TGG | - | chr2.1:63576946-63576965 | None:intergenic | 35.0% | |
GGAATAGTATTTGGACTTTC+AGG | - | chr2.1:63576937-63576956 | None:intergenic | 35.0% | |
GGTACGTTAGTTATAGTTCA+AGG | + | chr2.1:63578133-63578152 | MS.gene003125:intron | 35.0% | |
GTAAATCAATGTTGTCTTGC+AGG | + | chr2.1:63576668-63576687 | MS.gene003125:intron | 35.0% | |
TAAATGCTTGACAAGAATCC+AGG | - | chr2.1:63577957-63577976 | None:intergenic | 35.0% | |
TAGGCTTAATTCCATGAAAC+CGG | - | chr2.1:63578365-63578384 | None:intergenic | 35.0% | |
TGAAAAAGGGGACTTCAAAT+TGG | + | chr2.1:63577788-63577807 | MS.gene003125:intron | 35.0% | |
TGAGAGAGAACTAGTGTATT+TGG | + | chr2.1:63577194-63577213 | MS.gene003125:intron | 35.0% | |
TGTCATGAATGAAAAACACG+AGG | + | chr2.1:63576993-63577012 | MS.gene003125:CDS | 35.0% | |
TGTTTCCTTCTAACAAGCAT+TGG | - | chr2.1:63576464-63576483 | None:intergenic | 35.0% | |
TTCAAACTAAGCAGTGTTTC+TGG | + | chr2.1:63578157-63578176 | MS.gene003125:intron | 35.0% | |
TTTACGTGTTTAGTTAGGCA+CGG | + | chr2.1:63578507-63578526 | MS.gene003125:intron | 35.0% | |
TTTGTTTGGCTAAGATGGAT+GGG | + | chr2.1:63578733-63578752 | MS.gene003125:CDS | 35.0% | |
! | AATGGTTCTGTTGAGAAGTT+TGG | + | chr2.1:63576782-63576801 | MS.gene003125:intron | 35.0% |
! | AGTTTTCCTATCTTGTACCT+TGG | + | chr2.1:63577115-63577134 | MS.gene003125:intron | 35.0% |
! | ATATCAGTCTTTTGGACGAA+TGG | - | chr2.1:63578693-63578712 | None:intergenic | 35.0% |
! | CACGTAAATACTAGCTTAAG+GGG | - | chr2.1:63578495-63578514 | None:intergenic | 35.0% |
! | CGTATTTTTCTTTACTGCAG+TGG | + | chr2.1:63578640-63578659 | MS.gene003125:intron | 35.0% |
! | TTCATCCAATGCTTGTTAGA+AGG | + | chr2.1:63576456-63576475 | MS.gene003125:intron | 35.0% |
! | TTCTATGACAGGAAGGTTTT+TGG | + | chr2.1:63576866-63576885 | MS.gene003125:intron | 35.0% |
!! | GGAAAATAGTGGACTATTTC+AGG | + | chr2.1:63577418-63577437 | MS.gene003125:CDS | 35.0% |
!! | TAAGCAACTACCTTTTGAAG+TGG | - | chr2.1:63576027-63576046 | None:intergenic | 35.0% |
!! | TGAATGCTGAAGCATTGAAA+AGG | + | chr2.1:63578823-63578842 | MS.gene003125:CDS | 35.0% |
!! | TTCTGGAAGTATTAGCATTC+AGG | + | chr2.1:63577733-63577752 | MS.gene003125:CDS | 35.0% |
!!! | AAGCAACTACCTTTTGAAGT+GGG | - | chr2.1:63576026-63576045 | None:intergenic | 35.0% |
AAAAGGGGACTTCAAATTGG+AGG | + | chr2.1:63577791-63577810 | MS.gene003125:intron | 40.0% | |
ACGAATGTAGTCGAATCCAT+AGG | - | chr2.1:63576287-63576306 | None:intergenic | 40.0% | |
ACTAAGATCTCAGACGAAAG+GGG | - | chr2.1:63578086-63578105 | None:intergenic | 40.0% | |
ATTTGGCCATCCAATGCTTA+AGG | + | chr2.1:63578227-63578246 | MS.gene003125:intron | 40.0% | |
CACTAAGATCTCAGACGAAA+GGG | - | chr2.1:63578087-63578106 | None:intergenic | 40.0% | |
CGATGCTGTACAATTACCTT+CGG | + | chr2.1:63577633-63577652 | MS.gene003125:intron | 40.0% | |
CGATTCTTTCTATGACAGGA+AGG | + | chr2.1:63576859-63576878 | MS.gene003125:intron | 40.0% | |
CTGAATTTACACGGTTCTGT+TGG | + | chr2.1:63577342-63577361 | MS.gene003125:intron | 40.0% | |
GACTTCAAATTGGAGGTAGA+AGG | + | chr2.1:63577798-63577817 | MS.gene003125:intron | 40.0% | |
GATGCTGTACAATTACCTTC+GGG | + | chr2.1:63577634-63577653 | MS.gene003125:intron | 40.0% | |
TAAGGTCTGTTTGCGAGTTT+AGG | + | chr2.1:63578245-63578264 | MS.gene003125:intron | 40.0% | |
TAGACGAACTGGAATCTACA+TGG | - | chr2.1:63577665-63577684 | None:intergenic | 40.0% | |
TATTCGATGCATGTCAACTG+CGG | + | chr2.1:63576181-63576200 | MS.gene003125:CDS | 40.0% | |
TATTTCAGGGAACTGGAGTT+TGG | + | chr2.1:63577432-63577451 | MS.gene003125:CDS | 40.0% | |
TCAACCGATGATAAGTATGG+CGG | + | chr2.1:63576239-63576258 | MS.gene003125:CDS | 40.0% | |
TCTTGCTGAAGCCTTAGTTA+AGG | + | chr2.1:63576734-63576753 | MS.gene003125:CDS | 40.0% | |
TTACGTGTTTAGTTAGGCAC+GGG | + | chr2.1:63578508-63578527 | MS.gene003125:intron | 40.0% | |
! | AGCATTGGATGGCCAAATAA+TGG | - | chr2.1:63578225-63578244 | None:intergenic | 40.0% |
! | CGCGAGTTGTGATATTGATT+TGG | + | chr2.1:63576533-63576552 | MS.gene003125:intron | 40.0% |
! | TAAGATTGGAGTGTCATCCA+CGG | + | chr2.1:63576154-63576173 | MS.gene003125:CDS | 40.0% |
! | TGAGAGTGTACTGTACCTTA+GGG | + | chr2.1:63578603-63578622 | MS.gene003125:intron | 40.0% |
! | TTGAGAGTGTACTGTACCTT+AGG | + | chr2.1:63578602-63578621 | MS.gene003125:intron | 40.0% |
!! | AACAGACCTTAAGCATTGGA+TGG | - | chr2.1:63578236-63578255 | None:intergenic | 40.0% |
AACCAGTCTCGAGCTTGAAA+GGG | + | chr2.1:63578426-63578445 | MS.gene003125:intron | 45.0% | |
AACGCCGCCATACTTATCAT+CGG | - | chr2.1:63576246-63576265 | None:intergenic | 45.0% | |
AAGATGGATGGGCGATATTC+TGG | + | chr2.1:63578744-63578763 | MS.gene003125:CDS | 45.0% | |
ACCTGATCAACAACTCCAGT+AGG | - | chr2.1:63577464-63577483 | None:intergenic | 45.0% | |
AGAGAGGTCAAAGAAGAGAC+AGG | + | chr2.1:63577598-63577617 | MS.gene003125:CDS | 45.0% | |
AGTACTGCCTTGACGTTTGA+GGG | + | chr2.1:63577073-63577092 | MS.gene003125:intron | 45.0% | |
CCTGATCAACAACTCCAGTA+GGG | - | chr2.1:63577463-63577482 | None:intergenic | 45.0% | |
CGCAAACAGACCTTAAGCAT+TGG | - | chr2.1:63578240-63578259 | None:intergenic | 45.0% | |
CTTGAAAGGGGAGTTGAGTT+AGG | + | chr2.1:63578439-63578458 | MS.gene003125:intron | 45.0% | |
GATTCAACCCTCAAACGTCA+AGG | - | chr2.1:63577083-63577102 | None:intergenic | 45.0% | |
GCAATCTTCACCTTACATGC+CGG | + | chr2.1:63578343-63578362 | MS.gene003125:intron | 45.0% | |
GCACTAAGATCTCAGACGAA+AGG | - | chr2.1:63578088-63578107 | None:intergenic | 45.0% | |
GCAGTTGACATGCATCGAAT+AGG | - | chr2.1:63576182-63576201 | None:intergenic | 45.0% | |
GGAGTTTGGAAATTCCCTAC+TGG | + | chr2.1:63577446-63577465 | MS.gene003125:CDS | 45.0% | |
GTAAGGTGAAGATTGCCGAA+GGG | - | chr2.1:63578339-63578358 | None:intergenic | 45.0% | |
GTAGATTCCAGTTCGTCTAC+CGG | + | chr2.1:63577666-63577685 | MS.gene003125:intron | 45.0% | |
GTCTACCGGCATTTAACTCT+TGG | + | chr2.1:63577680-63577699 | MS.gene003125:intron | 45.0% | |
GTCTGTTTGCGAGTTTAGGA+GGG | + | chr2.1:63578249-63578268 | MS.gene003125:intron | 45.0% | |
TAACCAGTCTCGAGCTTGAA+AGG | + | chr2.1:63578425-63578444 | MS.gene003125:intron | 45.0% | |
TAAGTATGGCGGCGTTATTG+TGG | + | chr2.1:63576250-63576269 | MS.gene003125:CDS | 45.0% | |
TATGGGAGAATGTGTGTCCT+TGG | + | chr2.1:63577870-63577889 | MS.gene003125:intron | 45.0% | |
TCTGTTTGCGAGTTTAGGAG+GGG | + | chr2.1:63578250-63578269 | MS.gene003125:intron | 45.0% | |
TGAGACGCGTATTCCACAAA+TGG | - | chr2.1:63578669-63578688 | None:intergenic | 45.0% | |
TGGGCAGAAAATAGAGCATG+TGG | + | chr2.1:63578464-63578483 | MS.gene003125:intron | 45.0% | |
TGTAAGGTGAAGATTGCCGA+AGG | - | chr2.1:63578340-63578359 | None:intergenic | 45.0% | |
TTAAATGCCGGTAGACGAAC+TGG | - | chr2.1:63577676-63577695 | None:intergenic | 45.0% | |
TTCCATGAAACCGGCATGTA+AGG | - | chr2.1:63578356-63578375 | None:intergenic | 45.0% | |
! | AAGTACTGCCTTGACGTTTG+AGG | + | chr2.1:63577072-63577091 | MS.gene003125:intron | 45.0% |
!! | AGTGGACTATTTCAGGGAAC+TGG | + | chr2.1:63577425-63577444 | MS.gene003125:CDS | 45.0% |
!! | ATTAATTAAATTAAATATAG+AGG | - | chr2.1:63577280-63577299 | None:intergenic | 5.0% |
AAACTCCCAAACAGGCCCTT+CGG | + | chr2.1:63578321-63578340 | MS.gene003125:intron | 50.0% | |
AAGGGGAGTTGAGTTAGGCA+TGG | + | chr2.1:63578444-63578463 | MS.gene003125:intron | 50.0% | |
ACCAGTCTCGAGCTTGAAAG+GGG | + | chr2.1:63578427-63578446 | MS.gene003125:intron | 50.0% | |
ACGTCTACTACGTGCACTGA+AGG | + | chr2.1:63578534-63578553 | MS.gene003125:intron | 50.0% | |
AGGGGAGTTGAGTTAGGCAT+GGG | + | chr2.1:63578445-63578464 | MS.gene003125:intron | 50.0% | |
AGTGCAGAGGTCAGAGATAG+AGG | + | chr2.1:63578103-63578122 | MS.gene003125:CDS | 50.0% | |
CATGCATCGAATAGGAACCG+TGG | - | chr2.1:63576174-63576193 | None:intergenic | 50.0% | |
CCCTACTGGAGTTGTTGATC+AGG | + | chr2.1:63577460-63577479 | MS.gene003125:CDS | 50.0% | |
CTTCAGCAAGACCGACTAGA+TGG | - | chr2.1:63576725-63576744 | None:intergenic | 50.0% | |
GAGTTTAGGAGGGGAGAAGA+GGG | + | chr2.1:63578259-63578278 | MS.gene003125:intron | 50.0% | |
GCAAGACCGACTAGATGGAT+AGG | - | chr2.1:63576720-63576739 | None:intergenic | 50.0% | |
GGTCTGTTTGCGAGTTTAGG+AGG | + | chr2.1:63578248-63578267 | MS.gene003125:intron | 50.0% | |
GTGCAGAGGTCAGAGATAGA+GGG | + | chr2.1:63578104-63578123 | MS.gene003125:CDS | 50.0% | |
GTTGTCTTGCAGGGCAAGAA+GGG | + | chr2.1:63576678-63576697 | MS.gene003125:intron | 50.0% | |
TCAGTGCACGTAGTAGACGT+CGG | - | chr2.1:63578534-63578553 | None:intergenic | 50.0% | |
TCCTGCAAATGCCACACACA+GGG | + | chr2.1:63576954-63576973 | MS.gene003125:CDS | 50.0% | |
TGTGGAAGTGGATCAGCCTA+TGG | + | chr2.1:63576268-63576287 | MS.gene003125:CDS | 50.0% | |
TGTTGTCTTGCAGGGCAAGA+AGG | + | chr2.1:63576677-63576696 | MS.gene003125:intron | 50.0% | |
TTCCTGCAAATGCCACACAC+AGG | + | chr2.1:63576953-63576972 | MS.gene003125:CDS | 50.0% | |
TTGTGTAGCAGCGGTAAGAG+AGG | + | chr2.1:63577582-63577601 | MS.gene003125:CDS | 50.0% | |
! | ACTGCAGTGGATGCCATTTG+TGG | + | chr2.1:63578653-63578672 | MS.gene003125:intron | 50.0% |
! | CGTCTGAGATCTTAGTGCAG+AGG | + | chr2.1:63578090-63578109 | MS.gene003125:CDS | 50.0% |
!! | ATCTACATGGACTAGCCCGA+AGG | - | chr2.1:63577652-63577671 | None:intergenic | 50.0% |
!! | CACCTTACATGCCGGTTTCA+TGG | + | chr2.1:63578351-63578370 | MS.gene003125:intron | 50.0% |
ACCAATGCCAACCCTGTGTG+TGG | - | chr2.1:63576968-63576987 | None:intergenic | 55.0% | |
ACCCTGTGTGTGGCATTTGC+AGG | - | chr2.1:63576958-63576977 | None:intergenic | 55.0% | |
AGATTGCCGAAGGGCCTGTT+TGG | - | chr2.1:63578330-63578349 | None:intergenic | 55.0% | |
CGAGTTTAGGAGGGGAGAAG+AGG | + | chr2.1:63578258-63578277 | MS.gene003125:intron | 55.0% | |
GAAGGGCCTGTTTGGGAGTT+TGG | - | chr2.1:63578322-63578341 | None:intergenic | 55.0% | |
GATTGCCGAAGGGCCTGTTT+GGG | - | chr2.1:63578329-63578348 | None:intergenic | 55.0% | |
GCAAATGCCACACACAGGGT+TGG | + | chr2.1:63576958-63576977 | MS.gene003125:CDS | 55.0% | |
GCCTGTTTGGGAGTTTGGAG+GGG | - | chr2.1:63578317-63578336 | None:intergenic | 55.0% | |
GGCCTGTTTGGGAGTTTGGA+GGG | - | chr2.1:63578318-63578337 | None:intergenic | 55.0% | |
TCCCCTCCAAACTCCCAAAC+AGG | + | chr2.1:63578313-63578332 | MS.gene003125:intron | 55.0% | |
TCCCCTTTCAAGCTCGAGAC+TGG | - | chr2.1:63578431-63578450 | None:intergenic | 55.0% | |
TGCAGGGCAAGAAGGGAGTT+TGG | + | chr2.1:63576685-63576704 | MS.gene003125:intron | 55.0% | |
TGGCGGCGTTATTGTGGAAG+TGG | + | chr2.1:63576256-63576275 | MS.gene003125:CDS | 55.0% | |
! | AGCAGAGGACTTTGGGGGAA+GGG | - | chr2.1:63578294-63578313 | None:intergenic | 55.0% |
! | GTCAGAGATAGAGGGTGCAC+AGG | + | chr2.1:63578112-63578131 | MS.gene003125:CDS | 55.0% |
AGGGGAGCAGAGGACTTTGG+GGG | - | chr2.1:63578299-63578318 | None:intergenic | 60.0% | |
GAGGGGAGCAGAGGACTTTG+GGG | - | chr2.1:63578300-63578319 | None:intergenic | 60.0% | |
GGAGGGGAGCAGAGGACTTT+GGG | - | chr2.1:63578301-63578320 | None:intergenic | 60.0% | |
GGGCCTGTTTGGGAGTTTGG+AGG | - | chr2.1:63578319-63578338 | None:intergenic | 60.0% | |
TGGAGGGGAGCAGAGGACTT+TGG | - | chr2.1:63578302-63578321 | None:intergenic | 60.0% | |
! | GAGCAGAGGACTTTGGGGGA+AGG | - | chr2.1:63578295-63578314 | None:intergenic | 60.0% |
! | GCAGAGGACTTTGGGGGAAG+GGG | - | chr2.1:63578293-63578312 | None:intergenic | 60.0% |
! | GCCACACACAGGGTTGGCAT+TGG | + | chr2.1:63576964-63576983 | MS.gene003125:CDS | 60.0% |
GGGAGTTTGGAGGGGAGCAG+AGG | - | chr2.1:63578309-63578328 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 63575903 | 63578857 | 63575903 | ID=MS.gene003125 |
chr2.1 | mRNA | 63575903 | 63578857 | 63575903 | ID=MS.gene003125.t1;Parent=MS.gene003125 |
chr2.1 | exon | 63575903 | 63576035 | 63575903 | ID=MS.gene003125.t1.exon1;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63575903 | 63576035 | 63575903 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63576153 | 63576346 | 63576153 | ID=MS.gene003125.t1.exon2;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63576153 | 63576346 | 63576153 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63576690 | 63576755 | 63576690 | ID=MS.gene003125.t1.exon3;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63576690 | 63576755 | 63576690 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63576877 | 63577014 | 63576877 | ID=MS.gene003125.t1.exon4;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63576877 | 63577014 | 63576877 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63577404 | 63577481 | 63577404 | ID=MS.gene003125.t1.exon5;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63577404 | 63577481 | 63577404 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63577571 | 63577621 | 63577571 | ID=MS.gene003125.t1.exon6;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63577571 | 63577621 | 63577571 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63577720 | 63577754 | 63577720 | ID=MS.gene003125.t1.exon7;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63577720 | 63577754 | 63577720 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63578025 | 63578133 | 63578025 | ID=MS.gene003125.t1.exon8;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63578025 | 63578133 | 63578025 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
chr2.1 | exon | 63578660 | 63578857 | 63578660 | ID=MS.gene003125.t1.exon9;Parent=MS.gene003125.t1 |
chr2.1 | CDS | 63578660 | 63578857 | 63578660 | ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1 |
Gene Sequence |
Protein sequence |