AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003125


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003125.t1 MTR_2g026715 88.589 333 25 1 1 333 1 320 0.0 615
MS.gene003125.t1 MTR_2g026715 93.966 232 14 0 1 232 1 232 2.33e-164 457
MS.gene003125.t1 MTR_4g133945 72.302 278 71 4 59 333 3 277 1.05e-149 422
MS.gene003125.t1 MTR_3g460790 58.303 271 113 0 62 332 16 286 1.37e-115 336
MS.gene003125.t1 MTR_8g091995 59.449 254 100 2 72 324 19 270 1.34e-110 323
MS.gene003125.t1 MTR_3g082770 51.953 256 121 1 71 326 80 333 2.35e-103 307
MS.gene003125.t1 MTR_4g100480 48.201 278 143 1 56 332 76 353 1.18e-94 285
MS.gene003125.t1 MTR_3g460790 61.611 211 81 0 62 272 16 226 1.74e-93 278
MS.gene003125.t1 MTR_0446s0020 65.152 66 22 1 269 333 2 67 1.97e-24 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003125.t1 AT5G47650 61.450 262 99 1 71 332 19 278 9.58e-121 349
MS.gene003125.t1 AT5G47650 61.450 262 99 1 71 332 19 278 9.58e-121 349
MS.gene003125.t1 AT5G47650 61.450 262 99 1 71 332 19 278 9.58e-121 349
MS.gene003125.t1 AT5G47650 61.450 262 99 1 71 332 65 324 7.25e-120 348
MS.gene003125.t1 AT5G47650 61.450 262 99 1 71 332 66 325 7.26e-120 348
MS.gene003125.t1 AT4G25434 56.420 257 112 0 70 326 18 274 5.25e-105 309
MS.gene003125.t1 AT4G25434 54.864 257 111 1 70 326 18 269 1.57e-99 295
MS.gene003125.t1 AT4G25434 51.408 284 111 1 70 326 18 301 2.04e-99 296
MS.gene003125.t1 AT4G12720 50.746 268 129 3 65 330 4 270 4.98e-96 286
MS.gene003125.t1 AT4G12720 50.746 268 129 3 65 330 4 270 4.98e-96 286
MS.gene003125.t1 AT4G12720 50.746 268 129 3 65 330 4 270 4.98e-96 286
MS.gene003125.t1 AT4G25434 50.000 284 110 2 70 326 18 296 6.98e-94 281
MS.gene003125.t1 AT5G47240 49.064 267 134 2 60 324 84 350 1.08e-90 276
MS.gene003125.t1 AT4G12720 44.156 308 129 4 65 330 4 310 4.66e-88 267
MS.gene003125.t1 AT4G25434 61.809 199 76 0 70 268 18 216 2.02e-87 262
MS.gene003125.t1 AT2G04450 47.940 267 135 4 63 326 2 267 1.06e-85 260
MS.gene003125.t1 AT5G47240 44.595 296 133 3 60 324 84 379 7.34e-85 261
MS.gene003125.t1 AT4G25434 54.867 226 75 1 70 268 18 243 3.44e-82 249
MS.gene003125.t1 AT4G25434 59.799 199 75 1 70 268 18 211 4.18e-82 248
MS.gene003125.t1 AT4G25434 56.853 197 85 0 130 326 33 229 3.76e-80 244
MS.gene003125.t1 AT4G25434 56.853 197 85 0 130 326 33 229 3.76e-80 244
MS.gene003125.t1 AT2G04430 46.502 243 125 3 68 305 7 249 3.94e-79 243
MS.gene003125.t1 AT2G04430 46.502 243 125 3 68 305 26 268 9.70e-79 243
MS.gene003125.t1 AT4G12720 55.446 202 88 2 65 264 4 205 2.71e-78 239
MS.gene003125.t1 AT4G25434 54.822 197 84 1 130 326 33 224 1.36e-74 229
MS.gene003125.t1 AT4G25434 59.763 169 68 0 70 238 18 186 4.14e-70 218
MS.gene003125.t1 AT4G25434 49.282 209 79 1 145 326 1 209 6.64e-66 207
MS.gene003125.t1 AT4G25434 52.041 196 67 1 70 238 18 213 9.60e-65 205
MS.gene003125.t1 AT4G12720 50.000 188 91 3 145 330 1 187 1.42e-61 195
MS.gene003125.t1 AT2G04440 46.259 147 75 2 63 206 2 147 8.23e-44 150

Find 67 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACAAGCATTAAATATTT+TGG 0.133502 2.1:-63576904 None:intergenic
GGAAAATAGTGGACTATTTC+AGG 0.142281 2.1:+63577418 MS.gene003125:CDS
ATAGGTTGATTCAGAATTTC+TGG 0.172583 2.1:+63577716 MS.gene003125:intron
GGAATAGTATTTGGACTTTC+AGG 0.173194 2.1:-63576934 None:intergenic
TGCAAGATAACGAGAATTAT+TGG 0.203640 2.1:-63575946 None:intergenic
GCATTTGCAGGAATAGTATT+TGG 0.212021 2.1:-63576943 None:intergenic
GAGAAGATAATTGAGAATTT+TGG 0.234530 2.1:-63575918 None:intergenic
ACTTCAAAATATCAGTCTTT+TGG 0.252432 2.1:-63578698 None:intergenic
AAGATGGATGGGCGATATTC+TGG 0.271028 2.1:+63578744 MS.gene003125:CDS
ATCTTAGGTACTAGTTGTTC+AGG 0.284024 2.1:+63577397 MS.gene003125:intron
TTCTGGAAGTATTAGCATTC+AGG 0.309877 2.1:+63577733 MS.gene003125:CDS
TATTTCAGGGAACTGGAGTT+TGG 0.329206 2.1:+63577432 MS.gene003125:CDS
AATATTTAATGCTTGTGTAT+TGG 0.331420 2.1:+63576908 MS.gene003125:CDS
CGATATTTGTTTGGCTAAGA+TGG 0.346862 2.1:+63578728 MS.gene003125:CDS
TGCAGGGCAAGAAGGGAGTT+TGG 0.356585 2.1:+63576685 MS.gene003125:intron
GTATATGAACGATATTTGTT+TGG 0.375418 2.1:+63578719 MS.gene003125:CDS
ACCCTGTGTGTGGCATTTGC+AGG 0.375917 2.1:-63576955 None:intergenic
AAGTTTGATAATGTAGATAC+TGG 0.404746 2.1:-63578774 None:intergenic
AGTGGACTATTTCAGGGAAC+TGG 0.415432 2.1:+63577425 MS.gene003125:CDS
AGTGCAGAGGTCAGAGATAG+AGG 0.417005 2.1:+63578103 MS.gene003125:CDS
ACATCAACCGATGATAAGTA+TGG 0.442025 2.1:+63576236 MS.gene003125:CDS
CTTCAGCAAGACCGACTAGA+TGG 0.444644 2.1:-63576722 None:intergenic
CCCTACTGGAGTTGTTGATC+AGG 0.445398 2.1:+63577460 MS.gene003125:CDS
CACTAAGATCTCAGACGAAA+GGG 0.462404 2.1:-63578084 None:intergenic
ATTAAAACACCCACTTCAAA+AGG 0.462920 2.1:+63576014 MS.gene003125:CDS
GCAGTTGACATGCATCGAAT+AGG 0.468117 2.1:-63576179 None:intergenic
CAATAGTGTTACCTTAACTA+AGG 0.470543 2.1:-63576745 None:intergenic
TGTGGAAGTGGATCAGCCTA+TGG 0.485922 2.1:+63576268 MS.gene003125:CDS
ATTTGTTTGGCTAAGATGGA+TGG 0.489246 2.1:+63578732 MS.gene003125:CDS
GTCAGAGATAGAGGGTGCAC+AGG 0.494835 2.1:+63578112 MS.gene003125:CDS
TAAATCTGACTTCTCAAAGA+AGG 0.503504 2.1:-63578039 None:intergenic
GGAGTTTGGAAATTCCCTAC+TGG 0.504272 2.1:+63577446 MS.gene003125:CDS
TGGCGGCGTTATTGTGGAAG+TGG 0.506390 2.1:+63576256 MS.gene003125:CDS
GAAAATAGTGGACTATTTCA+GGG 0.507425 2.1:+63577419 MS.gene003125:CDS
CTAGTTGTTCAGGAAAATAG+TGG 0.509297 2.1:+63577407 MS.gene003125:CDS
GTTGTCTTGCAGGGCAAGAA+GGG 0.510569 2.1:+63576678 MS.gene003125:intron
ACTGCAGTGGATGCCATTTG+TGG 0.515009 2.1:+63578653 MS.gene003125:intron
TCTTGCTGAAGCCTTAGTTA+AGG 0.518721 2.1:+63576734 MS.gene003125:CDS
TGTTGTCTTGCAGGGCAAGA+AGG 0.521293 2.1:+63576677 MS.gene003125:intron
AGAGAGGTCAAAGAAGAGAC+AGG 0.538041 2.1:+63577598 MS.gene003125:CDS
TGAGACGCGTATTCCACAAA+TGG 0.538269 2.1:-63578666 None:intergenic
TATTCTTTATGTGTATGTTG+CGG 0.538500 2.1:+63578060 MS.gene003125:CDS
TGAATGCTGAAGCATTGAAA+AGG 0.540603 2.1:+63578823 MS.gene003125:CDS
GCCACACACAGGGTTGGCAT+TGG 0.540943 2.1:+63576964 MS.gene003125:CDS
TTTGTTTGGCTAAGATGGAT+GGG 0.543258 2.1:+63578733 MS.gene003125:CDS
GTGCAGAGGTCAGAGATAGA+GGG 0.578452 2.1:+63578104 MS.gene003125:CDS
AAATTACCTATCCATCTAGT+CGG 0.581467 2.1:+63576711 MS.gene003125:CDS
GCACTAAGATCTCAGACGAA+AGG 0.589071 2.1:-63578085 None:intergenic
GCAAGACCGACTAGATGGAT+AGG 0.593880 2.1:-63576717 None:intergenic
ACCTGATCAACAACTCCAGT+AGG 0.596031 2.1:-63577461 None:intergenic
TTCCTGCAAATGCCACACAC+AGG 0.601163 2.1:+63576953 MS.gene003125:CDS
TAAGTATGGCGGCGTTATTG+TGG 0.606216 2.1:+63576250 MS.gene003125:CDS
CCTGATCAACAACTCCAGTA+GGG 0.608982 2.1:-63577460 None:intergenic
GCAAATGCCACACACAGGGT+TGG 0.610645 2.1:+63576958 MS.gene003125:CDS
TTATATCTTCATGTAGAACA+AGG 0.611389 2.1:+63575985 MS.gene003125:CDS
TCCTGCAAATGCCACACACA+GGG 0.616524 2.1:+63576954 MS.gene003125:CDS
CGTCTGAGATCTTAGTGCAG+AGG 0.620103 2.1:+63578090 MS.gene003125:CDS
ACGAATGTAGTCGAATCCAT+AGG 0.621160 2.1:-63576284 None:intergenic
TTGTGTAGCAGCGGTAAGAG+AGG 0.623662 2.1:+63577582 MS.gene003125:CDS
TAAGATTGGAGTGTCATCCA+CGG 0.636159 2.1:+63576154 MS.gene003125:CDS
AGAAGATATTTGTGTAGCAG+CGG 0.644894 2.1:+63577573 MS.gene003125:CDS
ACTAAGATCTCAGACGAAAG+GGG 0.650300 2.1:-63578083 None:intergenic
AACGCCGCCATACTTATCAT+CGG 0.651332 2.1:-63576243 None:intergenic
ACCAATGCCAACCCTGTGTG+TGG 0.684168 2.1:-63576965 None:intergenic
TATTCGATGCATGTCAACTG+CGG 0.685431 2.1:+63576181 MS.gene003125:CDS
CATGCATCGAATAGGAACCG+TGG 0.694483 2.1:-63576171 None:intergenic
TCAACCGATGATAAGTATGG+CGG 0.745097 2.1:+63576239 MS.gene003125:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATCAATGATTGAAAA+AGG + chr2.1:63577774-63577793 MS.gene003125:intron 15.0%
!! TATTATCAATGATTGAAAAA+GGG + chr2.1:63577775-63577794 MS.gene003125:intron 15.0%
!!! ACACTTTTTTCTATAAATAA+AGG - chr2.1:63577250-63577269 None:intergenic 15.0%
!!! TAATGATATGATATCATTTT+AGG - chr2.1:63578391-63578410 None:intergenic 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG + chr2.1:63578182-63578201 MS.gene003125:intron 15.0%
!! AATATTTAATGCTTGTGTAT+TGG + chr2.1:63576908-63576927 MS.gene003125:CDS 20.0%
!! ACAATTGAGTTATTTATGTT+TGG + chr2.1:63576558-63576577 MS.gene003125:intron 20.0%
!! ATATCATCATATACAAAAAC+AGG - chr2.1:63577512-63577531 None:intergenic 20.0%
!! ATGATATTAGCCAAAAAAAA+TGG - chr2.1:63577846-63577865 None:intergenic 20.0%
!! ATTATCAATGATTGAAAAAG+GGG + chr2.1:63577776-63577795 MS.gene003125:intron 20.0%
!! ATTGCTTACCATATTAATAA+TGG + chr2.1:63576764-63576783 MS.gene003125:intron 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG - chr2.1:63578384-63578403 None:intergenic 20.0%
!!! ATTATTTCTTTAAAGTTTCC+TGG + chr2.1:63577936-63577955 MS.gene003125:intron 20.0%
!!! TACACAAGCATTAAATATTT+TGG - chr2.1:63576907-63576926 None:intergenic 20.0%
!!! TGTTTATGATGATTATGTTT+TGG + chr2.1:63576052-63576071 MS.gene003125:intron 20.0%
!!! TTTTTCTATAAATAAAGGAG+AGG - chr2.1:63577245-63577264 None:intergenic 20.0%
! AAATGCATAAAATTGATGCA+TGG - chr2.1:63576838-63576857 None:intergenic 25.0%
! ACTATCTTAGATCCATTATT+TGG + chr2.1:63578210-63578229 MS.gene003125:intron 25.0%
! AGAAATAAACAAATGTTCCA+AGG - chr2.1:63577890-63577909 None:intergenic 25.0%
! ATCAATGAATGCAATCAAAT+AGG - chr2.1:63576389-63576408 None:intergenic 25.0%
! CAACAGAACCATTATTAATA+TGG - chr2.1:63576775-63576794 None:intergenic 25.0%
! CTACTTATTTAACCTATACA+GGG + chr2.1:63577550-63577569 MS.gene003125:intron 25.0%
! GAAGTTTGGTTAATGAAAAT+TGG + chr2.1:63576796-63576815 MS.gene003125:intron 25.0%
! GTATATGAACGATATTTGTT+TGG + chr2.1:63578719-63578738 MS.gene003125:CDS 25.0%
! GTTCATTATCTGAATTTACA+CGG + chr2.1:63577333-63577352 MS.gene003125:intron 25.0%
! TAATCAAGCTTGTAGTTAAT+TGG + chr2.1:63577049-63577068 MS.gene003125:intron 25.0%
! TAGTATTTACGTGTTTAGTT+AGG + chr2.1:63578502-63578521 MS.gene003125:intron 25.0%
! TATTCTTTATGTGTATGTTG+CGG + chr2.1:63578060-63578079 MS.gene003125:CDS 25.0%
! TGAAAAATGCATGATGAAAT+AGG + chr2.1:63576422-63576441 MS.gene003125:intron 25.0%
! TTATATCTTCATGTAGAACA+AGG + chr2.1:63575985-63576004 MS.gene003125:CDS 25.0%
! TTGAGTTATTTATGTTTGGA+TGG + chr2.1:63576562-63576581 MS.gene003125:intron 25.0%
!! AATGATAATGTCGTGTAAAT+TGG + chr2.1:63577141-63577160 MS.gene003125:intron 25.0%
!! ACTTCAAAATATCAGTCTTT+TGG - chr2.1:63578701-63578720 None:intergenic 25.0%
!! ATGATAATGTCGTGTAAATT+GGG + chr2.1:63577142-63577161 MS.gene003125:intron 25.0%
!! GAGAAGATAATTGAGAATTT+TGG - chr2.1:63575921-63575940 None:intergenic 25.0%
!! TTGTTTAGAATTTAATAGCG+AGG - chr2.1:63577024-63577043 None:intergenic 25.0%
!! TTTTCCTTACTAGTTAAGAT+TGG + chr2.1:63576140-63576159 MS.gene003125:intron 25.0%
!!! AAGTTTGATAATGTAGATAC+TGG - chr2.1:63578777-63578796 None:intergenic 25.0%
!!! ATCTGTCACGAATTTTTTAT+TGG + chr2.1:63576640-63576659 MS.gene003125:intron 25.0%
!!! ATGGTTTTACTCTAAATGTT+TGG + chr2.1:63576581-63576600 MS.gene003125:intron 25.0%
!!! ATTGACATGTCCATTTTTTT+TGG + chr2.1:63577833-63577852 MS.gene003125:intron 25.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG + chr2.1:63577698-63577717 MS.gene003125:intron 25.0%
!!! TTATAGAAAAAAGTGTCGAA+TGG + chr2.1:63577254-63577273 MS.gene003125:intron 25.0%
AAATTACCTATCCATCTAGT+CGG + chr2.1:63576711-63576730 MS.gene003125:CDS 30.0%
ATTAAAACACCCACTTCAAA+AGG + chr2.1:63576014-63576033 MS.gene003125:CDS 30.0%
CAATAGTGTTACCTTAACTA+AGG - chr2.1:63576748-63576767 None:intergenic 30.0%
CCTACTTATTTAACCTATAC+AGG + chr2.1:63577549-63577568 MS.gene003125:intron 30.0%
CCTGTATAGGTTAAATAAGT+AGG - chr2.1:63577552-63577571 None:intergenic 30.0%
CTAGTGTATTTGGATCATTT+AGG + chr2.1:63577204-63577223 MS.gene003125:intron 30.0%
GTGACAAGAAATAAGATATG+TGG - chr2.1:63577303-63577322 None:intergenic 30.0%
TAAATCAATGTTGTCTTGCA+GGG + chr2.1:63576669-63576688 MS.gene003125:intron 30.0%
TAAATCTGACTTCTCAAAGA+AGG - chr2.1:63578042-63578061 None:intergenic 30.0%
TGAAAGAAGAAAAGAATGCT+TGG - chr2.1:63577985-63578004 None:intergenic 30.0%
TGCAAGATAACGAGAATTAT+TGG - chr2.1:63575949-63575968 None:intergenic 30.0%
TGGCTAATATCATTGTCTAT+GGG + chr2.1:63577853-63577872 MS.gene003125:intron 30.0%
TTGGCTAATATCATTGTCTA+TGG + chr2.1:63577852-63577871 MS.gene003125:intron 30.0%
TTTACGATTCTTTCTATGAC+AGG + chr2.1:63576855-63576874 MS.gene003125:intron 30.0%
! AACACGTAAATACTAGCTTA+AGG - chr2.1:63578497-63578516 None:intergenic 30.0%
! ACACGTAAATACTAGCTTAA+GGG - chr2.1:63578496-63578515 None:intergenic 30.0%
! CATTGCTATTCATTGATCTT+AGG + chr2.1:63577382-63577401 MS.gene003125:intron 30.0%
! GATTTTACATTGGAAGCAAA+TGG + chr2.1:63576325-63576344 MS.gene003125:CDS 30.0%
! TTAGAGCTTCGATTTTACAT+TGG + chr2.1:63576315-63576334 MS.gene003125:CDS 30.0%
!! ATAGGTTGATTCAGAATTTC+TGG + chr2.1:63577716-63577735 MS.gene003125:intron 30.0%
!! GAAAATAGTGGACTATTTCA+GGG + chr2.1:63577419-63577438 MS.gene003125:CDS 30.0%
!!! TTAAATATTTTGGTTCTGCG+TGG - chr2.1:63576897-63576916 None:intergenic 30.0%
AAGAACCAAGAGTTAAATGC+CGG - chr2.1:63577688-63577707 None:intergenic 35.0%
ACATCAACCGATGATAAGTA+TGG + chr2.1:63576236-63576255 MS.gene003125:CDS 35.0%
ACGACATTATCATTCTACCA+AGG - chr2.1:63577135-63577154 None:intergenic 35.0%
AGAAGATATTTGTGTAGCAG+CGG + chr2.1:63577573-63577592 MS.gene003125:CDS 35.0%
ATCTTAGGTACTAGTTGTTC+AGG + chr2.1:63577397-63577416 MS.gene003125:intron 35.0%
ATTCTACCAAGGTACAAGAT+AGG - chr2.1:63577124-63577143 None:intergenic 35.0%
ATTTGTTTGGCTAAGATGGA+TGG + chr2.1:63578732-63578751 MS.gene003125:CDS 35.0%
CAAATATCTTCTCCCTGTAT+AGG - chr2.1:63577565-63577584 None:intergenic 35.0%
CACTCCAATCTTAACTAGTA+AGG - chr2.1:63576147-63576166 None:intergenic 35.0%
CGATATTTGTTTGGCTAAGA+TGG + chr2.1:63578728-63578747 MS.gene003125:CDS 35.0%
CTAGTTGTTCAGGAAAATAG+TGG + chr2.1:63577407-63577426 MS.gene003125:CDS 35.0%
CTATAAATAAAGGAGAGGCA+AGG - chr2.1:63577240-63577259 None:intergenic 35.0%
CTTCAAAAGGTAGTTGCTTA+AGG + chr2.1:63576027-63576046 MS.gene003125:intron 35.0%
GAAGAATTGATATCTCCCTA+AGG - chr2.1:63578621-63578640 None:intergenic 35.0%
GCATTTGCAGGAATAGTATT+TGG - chr2.1:63576946-63576965 None:intergenic 35.0%
GGAATAGTATTTGGACTTTC+AGG - chr2.1:63576937-63576956 None:intergenic 35.0%
GGTACGTTAGTTATAGTTCA+AGG + chr2.1:63578133-63578152 MS.gene003125:intron 35.0%
GTAAATCAATGTTGTCTTGC+AGG + chr2.1:63576668-63576687 MS.gene003125:intron 35.0%
TAAATGCTTGACAAGAATCC+AGG - chr2.1:63577957-63577976 None:intergenic 35.0%
TAGGCTTAATTCCATGAAAC+CGG - chr2.1:63578365-63578384 None:intergenic 35.0%
TGAAAAAGGGGACTTCAAAT+TGG + chr2.1:63577788-63577807 MS.gene003125:intron 35.0%
TGAGAGAGAACTAGTGTATT+TGG + chr2.1:63577194-63577213 MS.gene003125:intron 35.0%
TGTCATGAATGAAAAACACG+AGG + chr2.1:63576993-63577012 MS.gene003125:CDS 35.0%
TGTTTCCTTCTAACAAGCAT+TGG - chr2.1:63576464-63576483 None:intergenic 35.0%
TTCAAACTAAGCAGTGTTTC+TGG + chr2.1:63578157-63578176 MS.gene003125:intron 35.0%
TTTACGTGTTTAGTTAGGCA+CGG + chr2.1:63578507-63578526 MS.gene003125:intron 35.0%
TTTGTTTGGCTAAGATGGAT+GGG + chr2.1:63578733-63578752 MS.gene003125:CDS 35.0%
! AATGGTTCTGTTGAGAAGTT+TGG + chr2.1:63576782-63576801 MS.gene003125:intron 35.0%
! AGTTTTCCTATCTTGTACCT+TGG + chr2.1:63577115-63577134 MS.gene003125:intron 35.0%
! ATATCAGTCTTTTGGACGAA+TGG - chr2.1:63578693-63578712 None:intergenic 35.0%
! CACGTAAATACTAGCTTAAG+GGG - chr2.1:63578495-63578514 None:intergenic 35.0%
! CGTATTTTTCTTTACTGCAG+TGG + chr2.1:63578640-63578659 MS.gene003125:intron 35.0%
! TTCATCCAATGCTTGTTAGA+AGG + chr2.1:63576456-63576475 MS.gene003125:intron 35.0%
! TTCTATGACAGGAAGGTTTT+TGG + chr2.1:63576866-63576885 MS.gene003125:intron 35.0%
!! GGAAAATAGTGGACTATTTC+AGG + chr2.1:63577418-63577437 MS.gene003125:CDS 35.0%
!! TAAGCAACTACCTTTTGAAG+TGG - chr2.1:63576027-63576046 None:intergenic 35.0%
!! TGAATGCTGAAGCATTGAAA+AGG + chr2.1:63578823-63578842 MS.gene003125:CDS 35.0%
!! TTCTGGAAGTATTAGCATTC+AGG + chr2.1:63577733-63577752 MS.gene003125:CDS 35.0%
!!! AAGCAACTACCTTTTGAAGT+GGG - chr2.1:63576026-63576045 None:intergenic 35.0%
AAAAGGGGACTTCAAATTGG+AGG + chr2.1:63577791-63577810 MS.gene003125:intron 40.0%
ACGAATGTAGTCGAATCCAT+AGG - chr2.1:63576287-63576306 None:intergenic 40.0%
ACTAAGATCTCAGACGAAAG+GGG - chr2.1:63578086-63578105 None:intergenic 40.0%
ATTTGGCCATCCAATGCTTA+AGG + chr2.1:63578227-63578246 MS.gene003125:intron 40.0%
CACTAAGATCTCAGACGAAA+GGG - chr2.1:63578087-63578106 None:intergenic 40.0%
CGATGCTGTACAATTACCTT+CGG + chr2.1:63577633-63577652 MS.gene003125:intron 40.0%
CGATTCTTTCTATGACAGGA+AGG + chr2.1:63576859-63576878 MS.gene003125:intron 40.0%
CTGAATTTACACGGTTCTGT+TGG + chr2.1:63577342-63577361 MS.gene003125:intron 40.0%
GACTTCAAATTGGAGGTAGA+AGG + chr2.1:63577798-63577817 MS.gene003125:intron 40.0%
GATGCTGTACAATTACCTTC+GGG + chr2.1:63577634-63577653 MS.gene003125:intron 40.0%
TAAGGTCTGTTTGCGAGTTT+AGG + chr2.1:63578245-63578264 MS.gene003125:intron 40.0%
TAGACGAACTGGAATCTACA+TGG - chr2.1:63577665-63577684 None:intergenic 40.0%
TATTCGATGCATGTCAACTG+CGG + chr2.1:63576181-63576200 MS.gene003125:CDS 40.0%
TATTTCAGGGAACTGGAGTT+TGG + chr2.1:63577432-63577451 MS.gene003125:CDS 40.0%
TCAACCGATGATAAGTATGG+CGG + chr2.1:63576239-63576258 MS.gene003125:CDS 40.0%
TCTTGCTGAAGCCTTAGTTA+AGG + chr2.1:63576734-63576753 MS.gene003125:CDS 40.0%
TTACGTGTTTAGTTAGGCAC+GGG + chr2.1:63578508-63578527 MS.gene003125:intron 40.0%
! AGCATTGGATGGCCAAATAA+TGG - chr2.1:63578225-63578244 None:intergenic 40.0%
! CGCGAGTTGTGATATTGATT+TGG + chr2.1:63576533-63576552 MS.gene003125:intron 40.0%
! TAAGATTGGAGTGTCATCCA+CGG + chr2.1:63576154-63576173 MS.gene003125:CDS 40.0%
! TGAGAGTGTACTGTACCTTA+GGG + chr2.1:63578603-63578622 MS.gene003125:intron 40.0%
! TTGAGAGTGTACTGTACCTT+AGG + chr2.1:63578602-63578621 MS.gene003125:intron 40.0%
!! AACAGACCTTAAGCATTGGA+TGG - chr2.1:63578236-63578255 None:intergenic 40.0%
AACCAGTCTCGAGCTTGAAA+GGG + chr2.1:63578426-63578445 MS.gene003125:intron 45.0%
AACGCCGCCATACTTATCAT+CGG - chr2.1:63576246-63576265 None:intergenic 45.0%
AAGATGGATGGGCGATATTC+TGG + chr2.1:63578744-63578763 MS.gene003125:CDS 45.0%
ACCTGATCAACAACTCCAGT+AGG - chr2.1:63577464-63577483 None:intergenic 45.0%
AGAGAGGTCAAAGAAGAGAC+AGG + chr2.1:63577598-63577617 MS.gene003125:CDS 45.0%
AGTACTGCCTTGACGTTTGA+GGG + chr2.1:63577073-63577092 MS.gene003125:intron 45.0%
CCTGATCAACAACTCCAGTA+GGG - chr2.1:63577463-63577482 None:intergenic 45.0%
CGCAAACAGACCTTAAGCAT+TGG - chr2.1:63578240-63578259 None:intergenic 45.0%
CTTGAAAGGGGAGTTGAGTT+AGG + chr2.1:63578439-63578458 MS.gene003125:intron 45.0%
GATTCAACCCTCAAACGTCA+AGG - chr2.1:63577083-63577102 None:intergenic 45.0%
GCAATCTTCACCTTACATGC+CGG + chr2.1:63578343-63578362 MS.gene003125:intron 45.0%
GCACTAAGATCTCAGACGAA+AGG - chr2.1:63578088-63578107 None:intergenic 45.0%
GCAGTTGACATGCATCGAAT+AGG - chr2.1:63576182-63576201 None:intergenic 45.0%
GGAGTTTGGAAATTCCCTAC+TGG + chr2.1:63577446-63577465 MS.gene003125:CDS 45.0%
GTAAGGTGAAGATTGCCGAA+GGG - chr2.1:63578339-63578358 None:intergenic 45.0%
GTAGATTCCAGTTCGTCTAC+CGG + chr2.1:63577666-63577685 MS.gene003125:intron 45.0%
GTCTACCGGCATTTAACTCT+TGG + chr2.1:63577680-63577699 MS.gene003125:intron 45.0%
GTCTGTTTGCGAGTTTAGGA+GGG + chr2.1:63578249-63578268 MS.gene003125:intron 45.0%
TAACCAGTCTCGAGCTTGAA+AGG + chr2.1:63578425-63578444 MS.gene003125:intron 45.0%
TAAGTATGGCGGCGTTATTG+TGG + chr2.1:63576250-63576269 MS.gene003125:CDS 45.0%
TATGGGAGAATGTGTGTCCT+TGG + chr2.1:63577870-63577889 MS.gene003125:intron 45.0%
TCTGTTTGCGAGTTTAGGAG+GGG + chr2.1:63578250-63578269 MS.gene003125:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG - chr2.1:63578669-63578688 None:intergenic 45.0%
TGGGCAGAAAATAGAGCATG+TGG + chr2.1:63578464-63578483 MS.gene003125:intron 45.0%
TGTAAGGTGAAGATTGCCGA+AGG - chr2.1:63578340-63578359 None:intergenic 45.0%
TTAAATGCCGGTAGACGAAC+TGG - chr2.1:63577676-63577695 None:intergenic 45.0%
TTCCATGAAACCGGCATGTA+AGG - chr2.1:63578356-63578375 None:intergenic 45.0%
! AAGTACTGCCTTGACGTTTG+AGG + chr2.1:63577072-63577091 MS.gene003125:intron 45.0%
!! AGTGGACTATTTCAGGGAAC+TGG + chr2.1:63577425-63577444 MS.gene003125:CDS 45.0%
!! ATTAATTAAATTAAATATAG+AGG - chr2.1:63577280-63577299 None:intergenic 5.0%
AAACTCCCAAACAGGCCCTT+CGG + chr2.1:63578321-63578340 MS.gene003125:intron 50.0%
AAGGGGAGTTGAGTTAGGCA+TGG + chr2.1:63578444-63578463 MS.gene003125:intron 50.0%
ACCAGTCTCGAGCTTGAAAG+GGG + chr2.1:63578427-63578446 MS.gene003125:intron 50.0%
ACGTCTACTACGTGCACTGA+AGG + chr2.1:63578534-63578553 MS.gene003125:intron 50.0%
AGGGGAGTTGAGTTAGGCAT+GGG + chr2.1:63578445-63578464 MS.gene003125:intron 50.0%
AGTGCAGAGGTCAGAGATAG+AGG + chr2.1:63578103-63578122 MS.gene003125:CDS 50.0%
CATGCATCGAATAGGAACCG+TGG - chr2.1:63576174-63576193 None:intergenic 50.0%
CCCTACTGGAGTTGTTGATC+AGG + chr2.1:63577460-63577479 MS.gene003125:CDS 50.0%
CTTCAGCAAGACCGACTAGA+TGG - chr2.1:63576725-63576744 None:intergenic 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG + chr2.1:63578259-63578278 MS.gene003125:intron 50.0%
GCAAGACCGACTAGATGGAT+AGG - chr2.1:63576720-63576739 None:intergenic 50.0%
GGTCTGTTTGCGAGTTTAGG+AGG + chr2.1:63578248-63578267 MS.gene003125:intron 50.0%
GTGCAGAGGTCAGAGATAGA+GGG + chr2.1:63578104-63578123 MS.gene003125:CDS 50.0%
GTTGTCTTGCAGGGCAAGAA+GGG + chr2.1:63576678-63576697 MS.gene003125:intron 50.0%
TCAGTGCACGTAGTAGACGT+CGG - chr2.1:63578534-63578553 None:intergenic 50.0%
TCCTGCAAATGCCACACACA+GGG + chr2.1:63576954-63576973 MS.gene003125:CDS 50.0%
TGTGGAAGTGGATCAGCCTA+TGG + chr2.1:63576268-63576287 MS.gene003125:CDS 50.0%
TGTTGTCTTGCAGGGCAAGA+AGG + chr2.1:63576677-63576696 MS.gene003125:intron 50.0%
TTCCTGCAAATGCCACACAC+AGG + chr2.1:63576953-63576972 MS.gene003125:CDS 50.0%
TTGTGTAGCAGCGGTAAGAG+AGG + chr2.1:63577582-63577601 MS.gene003125:CDS 50.0%
! ACTGCAGTGGATGCCATTTG+TGG + chr2.1:63578653-63578672 MS.gene003125:intron 50.0%
! CGTCTGAGATCTTAGTGCAG+AGG + chr2.1:63578090-63578109 MS.gene003125:CDS 50.0%
!! ATCTACATGGACTAGCCCGA+AGG - chr2.1:63577652-63577671 None:intergenic 50.0%
!! CACCTTACATGCCGGTTTCA+TGG + chr2.1:63578351-63578370 MS.gene003125:intron 50.0%
ACCAATGCCAACCCTGTGTG+TGG - chr2.1:63576968-63576987 None:intergenic 55.0%
ACCCTGTGTGTGGCATTTGC+AGG - chr2.1:63576958-63576977 None:intergenic 55.0%
AGATTGCCGAAGGGCCTGTT+TGG - chr2.1:63578330-63578349 None:intergenic 55.0%
CGAGTTTAGGAGGGGAGAAG+AGG + chr2.1:63578258-63578277 MS.gene003125:intron 55.0%
GAAGGGCCTGTTTGGGAGTT+TGG - chr2.1:63578322-63578341 None:intergenic 55.0%
GATTGCCGAAGGGCCTGTTT+GGG - chr2.1:63578329-63578348 None:intergenic 55.0%
GCAAATGCCACACACAGGGT+TGG + chr2.1:63576958-63576977 MS.gene003125:CDS 55.0%
GCCTGTTTGGGAGTTTGGAG+GGG - chr2.1:63578317-63578336 None:intergenic 55.0%
GGCCTGTTTGGGAGTTTGGA+GGG - chr2.1:63578318-63578337 None:intergenic 55.0%
TCCCCTCCAAACTCCCAAAC+AGG + chr2.1:63578313-63578332 MS.gene003125:intron 55.0%
TCCCCTTTCAAGCTCGAGAC+TGG - chr2.1:63578431-63578450 None:intergenic 55.0%
TGCAGGGCAAGAAGGGAGTT+TGG + chr2.1:63576685-63576704 MS.gene003125:intron 55.0%
TGGCGGCGTTATTGTGGAAG+TGG + chr2.1:63576256-63576275 MS.gene003125:CDS 55.0%
! AGCAGAGGACTTTGGGGGAA+GGG - chr2.1:63578294-63578313 None:intergenic 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG + chr2.1:63578112-63578131 MS.gene003125:CDS 55.0%
AGGGGAGCAGAGGACTTTGG+GGG - chr2.1:63578299-63578318 None:intergenic 60.0%
GAGGGGAGCAGAGGACTTTG+GGG - chr2.1:63578300-63578319 None:intergenic 60.0%
GGAGGGGAGCAGAGGACTTT+GGG - chr2.1:63578301-63578320 None:intergenic 60.0%
GGGCCTGTTTGGGAGTTTGG+AGG - chr2.1:63578319-63578338 None:intergenic 60.0%
TGGAGGGGAGCAGAGGACTT+TGG - chr2.1:63578302-63578321 None:intergenic 60.0%
! GAGCAGAGGACTTTGGGGGA+AGG - chr2.1:63578295-63578314 None:intergenic 60.0%
! GCAGAGGACTTTGGGGGAAG+GGG - chr2.1:63578293-63578312 None:intergenic 60.0%
! GCCACACACAGGGTTGGCAT+TGG + chr2.1:63576964-63576983 MS.gene003125:CDS 60.0%
GGGAGTTTGGAGGGGAGCAG+AGG - chr2.1:63578309-63578328 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 63575903 63578857 63575903 ID=MS.gene003125
chr2.1 mRNA 63575903 63578857 63575903 ID=MS.gene003125.t1;Parent=MS.gene003125
chr2.1 exon 63575903 63576035 63575903 ID=MS.gene003125.t1.exon1;Parent=MS.gene003125.t1
chr2.1 CDS 63575903 63576035 63575903 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63576153 63576346 63576153 ID=MS.gene003125.t1.exon2;Parent=MS.gene003125.t1
chr2.1 CDS 63576153 63576346 63576153 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63576690 63576755 63576690 ID=MS.gene003125.t1.exon3;Parent=MS.gene003125.t1
chr2.1 CDS 63576690 63576755 63576690 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63576877 63577014 63576877 ID=MS.gene003125.t1.exon4;Parent=MS.gene003125.t1
chr2.1 CDS 63576877 63577014 63576877 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63577404 63577481 63577404 ID=MS.gene003125.t1.exon5;Parent=MS.gene003125.t1
chr2.1 CDS 63577404 63577481 63577404 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63577571 63577621 63577571 ID=MS.gene003125.t1.exon6;Parent=MS.gene003125.t1
chr2.1 CDS 63577571 63577621 63577571 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63577720 63577754 63577720 ID=MS.gene003125.t1.exon7;Parent=MS.gene003125.t1
chr2.1 CDS 63577720 63577754 63577720 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63578025 63578133 63578025 ID=MS.gene003125.t1.exon8;Parent=MS.gene003125.t1
chr2.1 CDS 63578025 63578133 63578025 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
chr2.1 exon 63578660 63578857 63578660 ID=MS.gene003125.t1.exon9;Parent=MS.gene003125.t1
chr2.1 CDS 63578660 63578857 63578660 ID=cds.MS.gene003125.t1;Parent=MS.gene003125.t1
Gene Sequence

>MS.gene003125

ATGCTTAGATCGCTTCCAAAATTCTCAATTATCTTCTCATCAACCAATAATTCTCGTTATCTTGCAAATGCTACTCAACGCTTTATATCTTCATGTAGAACAAGGAGAATAATTAAAACACCCACTTCAAAAGGTAGTTGCTTAAGGAATGTTTATGATGATTATGTTTTGGTTTCTTTAGAATTTCTAAAAGAAACAAGTCTTTTGTATATAATCTAACATGTTTCATTTTCTCATTTTTCCTTACTAGTTAAGATTGGAGTGTCATCCACGGTTCCTATTCGATGCATGTCAACTGCGGCAGAAGATCAAGTTCAACGTGTTAAAGTACTAACATCAACCGATGATAAGTATGGCGGCGTTATTGTGGAAGTGGATCAGCCTATGGATTCGACTACATTCGTCTCAATTCTTAGAGCTTCGATTTTACATTGGAAGCAAATGGTAAGTCTTTCGCAATAGTTGTTTACTAACGAATATTTTCCTATTTGATTGCATTCATTGATGCAAACATAGTAGTGAAAAATGCATGATGAAATAGGTGTTATAAATTTTCATCCAATGCTTGTTAGAAGGAAACAAAATAAACACACATTTTGTGTGTTTGAGACTTTGAATAAATGCTTGACACGCGAGTTGTGATATTGATTTGGTTACAATTGAGTTATTTATGTTTGGATGGTTTTACTCTAAATGTTTGGATATTTTTATTCTTACATATGTGCTGAAAATTTAGAATCTGTCACGAATTTTTTATTGGAGTTAGTAAATCAATGTTGTCTTGCAGGGCAAGAAGGGAGTTTGGATAAAATTACCTATCCATCTAGTCGGTCTTGCTGAAGCCTTAGTTAAGGTAACACTATTGCTTACCATATTAATAATGGTTCTGTTGAGAAGTTTGGTTAATGAAAATTGGAGTTTTACTAATGTTGCCATGCATCAATTTTATGCATTTACGATTCTTTCTATGACAGGAAGGTTTTTGGTTTCACCACGCAGAACCAAAATATTTAATGCTTGTGTATTGGATTCCTGAAAGTCCAAATACTATTCCTGCAAATGCCACACACAGGGTTGGCATTGGTTCATTTGTCATGAATGAAAAACACGAGGTATTTCCTCGCTATTAAATTCTAAACAACTTTGTAATCAAGCTTGTAGTTAATTGGAAGTACTGCCTTGACGTTTGAGGGTTGAATCTTTAACAAATGTAGTTTTCCTATCTTGTACCTTGGTAGAATGATAATGTCGTGTAAATTGGGATAAAAAATAACTCATGTGCTTTTTCGTCTGAGAGAGAACTAGTGTATTTGGATCATTTAGGAAAAAAAGAACCTTGCCTCTCCTTTATTTATAGAAAAAAGTGTCGAATGGCCTCTATATTTAATTTAATTAATCCACATATCTTATTTCTTGTCACTTTCTTTCGTGTTCATTATCTGAATTTACACGGTTCTGTTGGCAGCTAATATATTGCTTCATTGCTATTCATTGATCTTAGGTACTAGTTGTTCAGGAAAATAGTGGACTATTTCAGGGAACTGGAGTTTGGAAATTCCCTACTGGAGTTGTTGATCAGGTAAATGTGTTGAATTTAGAAAGCTTTCCTGTTTTTGTATATGATGATATGCTGTGTGTATATATAACCTACTTATTTAACCTATACAGGGAGAAGATATTTGTGTAGCAGCGGTAAGAGAGGTCAAAGAAGAGACAGGAGTAAGTAATTACGATGCTGTACAATTACCTTCGGGCTAGTCCATGTAGATTCCAGTTCGTCTACCGGCATTTAACTCTTGGTTCTTTCAATTTTATAGGTTGATTCAGAATTTCTGGAAGTATTAGCATTCAGGTAGCATACTTGTAAGAATATATTATCAATGATTGAAAAAGGGGACTTCAAATTGGAGGTAGAAGGTTCAAATCTCATATTGACATGTCCATTTTTTTTGGCTAATATCATTGTCTATGGGAGAATGTGTGTCCTTGGAACATTTGTTTATTTCTAATTTTTCTTGATAAATTAGTAATCTATTATTTCTTTAAAGTTTCCTGGATTCTTGTCAAGCATTTAGATGACCAAGCATTCTTTTCTTCTTTCATCTGAATATCTGATCAACAGACAGAGTCACAATTCCTTCTTTGAGAAGTCAGATTTATTCTTTATGTGTATGTTGCGGCCCCTTTCGTCTGAGATCTTAGTGCAGAGGTCAGAGATAGAGGGTGCACAGGTACGTTAGTTATAGTTCAAGGCTTCAAACTAAGCAGTGTTTCTGGTTTTTAAAATGTTCAATACTTATGGTTCAAACTATCTTAGATCCATTATTTGGCCATCCAATGCTTAAGGTCTGTTTGCGAGTTTAGGAGGGGAGAAGAGGGCTATGTGACCCCTTCCCCCAAAGTCCTCTGCTCCCCTCCAAACTCCCAAACAGGCCCTTCGGCAATCTTCACCTTACATGCCGGTTTCATGGAATTAAGCCTAAAACCTAAAATGATATCATATCATTAATTAATGTTTTAGATAACCAGTCTCGAGCTTGAAAGGGGAGTTGAGTTAGGCATGGGCAGAAAATAGAGCATGTGGTATCACCCCTTAAGCTAGTATTTACGTGTTTAGTTAGGCACGGGCCGACGTCTACTACGTGCACTGAAGGCGAAGCTCTTCTTTTCAATGTTGTTTTGCTTTATCACATAAAAGTTTGAGAGTGTACTGTACCTTAGGGAGATATCAATTCTTCGTATTTTTCTTTACTGCAGTGGATGCCATTTGTGGAATACGCGTCTCAGCCATTCGTCCAAAAGACTGATATTTTGAAGTATATGAACGATATTTGTTTGGCTAAGATGGATGGGCGATATTCTGGATATACTCCAGTATCTACATTATCAAACTTCTCAGAACAACAGTATTATATGTACTTGAATGCTGAAGCATTGAAAAGGTCCAACTCTTGA

Protein sequence

>MS.gene003125.t1

MLRSLPKFSIIFSSTNNSRYLANATQRFISSCRTRRIIKTPTSKVKIGVSSTVPIRCMSTAAEDQVQRVKVLTSTDDKYGGVIVEVDQPMDSTTFVSILRASILHWKQMGKKGVWIKLPIHLVGLAEALVKEGFWFHHAEPKYLMLVYWIPESPNTIPANATHRVGIGSFVMNEKHEVLVVQENSGLFQGTGVWKFPTGVVDQGEDICVAAVREVKEETGVDSEFLEVLAFRQSHNSFFEKSDLFFMCMLRPLSSEILVQRSEIEGAQWMPFVEYASQPFVQKTDILKYMNDICLAKMDGRYSGYTPVSTLSNFSEQQYYMYLNAEALKRSNS