Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05654.t1 | XP_013460058.1 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 2.70E-164 | 587.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05654.t1 | Q6NPD7 | 60.9 | 258 | 96 | 1 | 24 | 281 | 18 | 270 | 7.6e-91 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05654.t1 | A0A072UW81 | 98.3 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 2.0e-164 | 587.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43426 | MS.gene05654 | PPI |
| MS.gene95099 | MS.gene05654 | PPI |
| MS.gene048250 | MS.gene05654 | PPI |
| MS.gene003125 | MS.gene05654 | PPI |
| MS.gene02910 | MS.gene05654 | PPI |
| MS.gene042087 | MS.gene05654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05654.t1 | MTR_3g460790 | 98.252 | 286 | 5 | 0 | 1 | 286 | 1 | 286 | 0.0 | 585 |
| MS.gene05654.t1 | MTR_3g460790 | 96.916 | 227 | 7 | 0 | 1 | 227 | 1 | 227 | 2.29e-164 | 456 |
| MS.gene05654.t1 | MTR_2g026715 | 59.470 | 264 | 107 | 0 | 23 | 286 | 56 | 319 | 1.08e-114 | 333 |
| MS.gene05654.t1 | MTR_4g133945 | 58.052 | 267 | 109 | 2 | 23 | 286 | 10 | 276 | 8.36e-111 | 322 |
| MS.gene05654.t1 | MTR_3g082770 | 57.198 | 257 | 108 | 1 | 25 | 281 | 80 | 334 | 5.10e-103 | 304 |
| MS.gene05654.t1 | MTR_8g091995 | 56.746 | 252 | 108 | 1 | 31 | 282 | 24 | 274 | 8.82e-101 | 296 |
| MS.gene05654.t1 | MTR_4g100480 | 50.190 | 263 | 130 | 1 | 25 | 286 | 91 | 353 | 1.81e-89 | 270 |
| MS.gene05654.t1 | MTR_2g026715 | 62.577 | 163 | 61 | 0 | 23 | 185 | 69 | 231 | 1.96e-71 | 220 |
| MS.gene05654.t1 | MTR_0446s0020 | 41.538 | 65 | 37 | 1 | 223 | 286 | 2 | 66 | 4.58e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05654.t1 | AT4G25434 | 62.403 | 258 | 97 | 0 | 24 | 281 | 18 | 275 | 2.50e-121 | 348 |
| MS.gene05654.t1 | AT4G25434 | 60.853 | 258 | 96 | 1 | 24 | 281 | 18 | 270 | 6.69e-116 | 335 |
| MS.gene05654.t1 | AT4G25434 | 56.491 | 285 | 97 | 1 | 24 | 281 | 18 | 302 | 9.28e-116 | 335 |
| MS.gene05654.t1 | AT4G25434 | 55.088 | 285 | 96 | 2 | 24 | 281 | 18 | 297 | 2.93e-110 | 321 |
| MS.gene05654.t1 | AT5G47650 | 56.705 | 261 | 111 | 1 | 22 | 282 | 16 | 274 | 4.22e-110 | 320 |
| MS.gene05654.t1 | AT5G47650 | 56.705 | 261 | 111 | 1 | 22 | 282 | 16 | 274 | 4.22e-110 | 320 |
| MS.gene05654.t1 | AT5G47650 | 56.705 | 261 | 111 | 1 | 22 | 282 | 16 | 274 | 4.22e-110 | 320 |
| MS.gene05654.t1 | AT5G47650 | 56.705 | 261 | 111 | 1 | 22 | 282 | 63 | 321 | 1.19e-108 | 318 |
| MS.gene05654.t1 | AT5G47650 | 56.705 | 261 | 111 | 1 | 22 | 282 | 62 | 320 | 1.28e-108 | 318 |
| MS.gene05654.t1 | AT4G25434 | 67.839 | 199 | 64 | 0 | 24 | 222 | 18 | 216 | 2.28e-98 | 288 |
| MS.gene05654.t1 | AT4G25434 | 65.829 | 199 | 63 | 1 | 24 | 222 | 18 | 211 | 5.37e-93 | 274 |
| MS.gene05654.t1 | AT4G25434 | 59.735 | 226 | 64 | 1 | 24 | 222 | 18 | 243 | 6.82e-93 | 275 |
| MS.gene05654.t1 | AT4G25434 | 63.000 | 200 | 74 | 0 | 82 | 281 | 31 | 230 | 7.56e-93 | 275 |
| MS.gene05654.t1 | AT4G25434 | 63.000 | 200 | 74 | 0 | 82 | 281 | 31 | 230 | 7.56e-93 | 275 |
| MS.gene05654.t1 | AT4G12720 | 50.579 | 259 | 125 | 3 | 23 | 279 | 8 | 265 | 7.58e-88 | 263 |
| MS.gene05654.t1 | AT4G12720 | 50.579 | 259 | 125 | 3 | 23 | 279 | 8 | 265 | 7.58e-88 | 263 |
| MS.gene05654.t1 | AT4G12720 | 50.579 | 259 | 125 | 3 | 23 | 279 | 8 | 265 | 7.58e-88 | 263 |
| MS.gene05654.t1 | AT5G47240 | 51.724 | 261 | 124 | 2 | 25 | 283 | 95 | 355 | 1.91e-87 | 265 |
| MS.gene05654.t1 | AT4G25434 | 61.000 | 200 | 73 | 1 | 82 | 281 | 31 | 225 | 1.96e-87 | 261 |
| MS.gene05654.t1 | AT2G04450 | 50.794 | 252 | 120 | 4 | 31 | 279 | 16 | 266 | 5.54e-83 | 251 |
| MS.gene05654.t1 | AT5G47240 | 46.897 | 290 | 123 | 3 | 25 | 283 | 95 | 384 | 1.49e-81 | 251 |
| MS.gene05654.t1 | AT4G12720 | 43.813 | 299 | 125 | 4 | 23 | 279 | 8 | 305 | 1.32e-79 | 244 |
| MS.gene05654.t1 | AT2G04430 | 49.174 | 242 | 118 | 3 | 23 | 259 | 8 | 249 | 1.11e-78 | 240 |
| MS.gene05654.t1 | AT4G25434 | 55.238 | 210 | 67 | 1 | 99 | 281 | 1 | 210 | 1.42e-78 | 238 |
| MS.gene05654.t1 | AT2G04430 | 49.174 | 242 | 118 | 3 | 23 | 259 | 27 | 268 | 4.26e-78 | 239 |
| MS.gene05654.t1 | AT4G25434 | 65.089 | 169 | 59 | 0 | 24 | 192 | 18 | 186 | 4.39e-77 | 234 |
| MS.gene05654.t1 | AT4G25434 | 56.122 | 196 | 59 | 1 | 24 | 192 | 18 | 213 | 1.76e-71 | 221 |
| MS.gene05654.t1 | AT4G12720 | 53.465 | 202 | 92 | 2 | 23 | 222 | 8 | 209 | 3.45e-70 | 216 |
| MS.gene05654.t1 | AT4G12720 | 50.273 | 183 | 88 | 3 | 99 | 279 | 1 | 182 | 9.41e-56 | 179 |
| MS.gene05654.t1 | AT2G04440 | 48.951 | 143 | 71 | 1 | 23 | 163 | 8 | 150 | 5.05e-41 | 141 |
Find 53 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCACACAATTCATTCTT+TGG | 0.205477 | 3.2:-51310861 | MS.gene05654:CDS |
| GCTAGTCCAGCACCCTCTTT+AGG | 0.227618 | 3.2:-51312997 | MS.gene05654:CDS |
| GGGGATCATTTATGTGAAAA+TGG | 0.233923 | 3.2:-51312976 | MS.gene05654:CDS |
| GGCTCATGCTTCTGATTAAA+TGG | 0.237624 | 3.2:+51310276 | None:intergenic |
| TTGTGGAGGTTCTAGGATTC+AGG | 0.251993 | 3.2:-51311831 | MS.gene05654:intron |
| CATTTATGTGAAAATGGTTT+TGG | 0.255040 | 3.2:-51312970 | MS.gene05654:CDS |
| ACAGAGTTTGTGGAGGTTCT+AGG | 0.270554 | 3.2:-51311838 | MS.gene05654:CDS |
| GCTACGTAATGCTAGTTTAC+TGG | 0.284065 | 3.2:-51312359 | MS.gene05654:CDS |
| AGAGGTAGATTTCATGGAAT+TGG | 0.293680 | 3.2:-51312143 | MS.gene05654:CDS |
| GATTTCATGGAATTGGAGTT+TGG | 0.341102 | 3.2:-51312136 | MS.gene05654:CDS |
| TCTTGTTGAAGTTGCTGTTA+AGG | 0.360722 | 3.2:-51312597 | MS.gene05654:intron |
| CTAGTCCAGCACCCTCTTTA+GGG | 0.368451 | 3.2:-51312996 | MS.gene05654:CDS |
| AAGATGGAAAGAACCTATAC+TGG | 0.388822 | 3.2:-51310222 | MS.gene05654:CDS |
| AGGCACACAATTCATTCTTT+GGG | 0.390186 | 3.2:-51310860 | MS.gene05654:CDS |
| GACTCCTCCATGAGCATCAT+TGG | 0.392578 | 3.2:+51312924 | None:intergenic |
| CTTACGCGATGAGAAGCATT+TGG | 0.402459 | 3.2:+51312309 | None:intergenic |
| TGACATCAAAAGGCAAGAAC+TGG | 0.415408 | 3.2:-51310793 | MS.gene05654:CDS |
| TAATTCAATCATGCACTTGA+AGG | 0.415526 | 3.2:+51310254 | None:intergenic |
| TGAATTATGCATAGCAAAGA+TGG | 0.416842 | 3.2:-51310238 | MS.gene05654:CDS |
| TCAGATTGATACAGAGTTTG+TGG | 0.426153 | 3.2:-51311848 | MS.gene05654:intron |
| TGTACTGCATATTCTTCAAA+TGG | 0.437066 | 3.2:+51310300 | None:intergenic |
| TTTATATTGTAGGGAAAAGA+TGG | 0.444227 | 3.2:-51312653 | MS.gene05654:intron |
| TGTTGACTTGAAGGATCCTA+TGG | 0.450396 | 3.2:-51312899 | MS.gene05654:CDS |
| TGTAGGGAAAAGATGGTGTC+TGG | 0.455256 | 3.2:-51312646 | MS.gene05654:intron |
| AGAGAAGTAAAAGAAGAGAC+AGG | 0.470591 | 3.2:-51311969 | MS.gene05654:CDS |
| GTTTACTGGATTCCTAAAAC+AGG | 0.473397 | 3.2:-51312345 | MS.gene05654:CDS |
| ACTGGAAATTGAAGCAGCTC+AGG | 0.493703 | 3.2:-51310775 | MS.gene05654:intron |
| CCTTTCACCAATGATGCTCA+TGG | 0.494329 | 3.2:-51312931 | MS.gene05654:CDS |
| TGATCCCCTAAAGAGGGTGC+TGG | 0.499053 | 3.2:+51312991 | None:intergenic |
| CATGAGCATCATTGGTGAAA+GGG | 0.499944 | 3.2:+51312932 | None:intergenic |
| AGGAGTCATTGTTGACTTGA+AGG | 0.501447 | 3.2:-51312908 | MS.gene05654:CDS |
| ACAAGATTAACAAGCTCAAT+CGG | 0.506783 | 3.2:+51312614 | None:intergenic |
| TAAACTAGCATTACGTAGCT+TGG | 0.523042 | 3.2:+51312363 | None:intergenic |
| TGTCTTGAATAATAAGAAAG+AGG | 0.523440 | 3.2:-51312274 | MS.gene05654:intron |
| CGCGATGAGAAGCATTTGGA+GGG | 0.524623 | 3.2:+51312313 | None:intergenic |
| GCTTCTCATCGCGTAAGCAT+TGG | 0.536106 | 3.2:-51312303 | MS.gene05654:CDS |
| CCATGAGCATCATTGGTGAA+AGG | 0.537836 | 3.2:+51312931 | None:intergenic |
| GGAGTTTGGAAGCTACCTAC+TGG | 0.539144 | 3.2:-51312122 | MS.gene05654:CDS |
| ACATAAATGATCCCCTAAAG+AGG | 0.543892 | 3.2:+51312984 | None:intergenic |
| TTTCTTATTATTCAAGACAA+TGG | 0.562717 | 3.2:+51312278 | None:intergenic |
| AATTCAATCATGCACTTGAA+GGG | 0.570928 | 3.2:+51310255 | None:intergenic |
| TCGTGGACAGAATCCAGTAT+AGG | 0.578753 | 3.2:+51310209 | None:intergenic |
| ACGCGATGAGAAGCATTTGG+AGG | 0.581635 | 3.2:+51312312 | None:intergenic |
| CATAAATGATCCCCTAAAGA+GGG | 0.599625 | 3.2:+51312985 | None:intergenic |
| AGACTCAAGAAGACTTGTCA+AGG | 0.602531 | 3.2:+51310130 | None:intergenic |
| TTACGTAGCTTGGCTCAGCA+TGG | 0.639167 | 3.2:+51312373 | None:intergenic |
| TGCAGTTGAGTCCATGTCAG+TGG | 0.640811 | 3.2:-51313022 | None:intergenic |
| TAGTCCAGCACCCTCTTTAG+GGG | 0.641140 | 3.2:-51312995 | MS.gene05654:CDS |
| ACTGCATCAACTACTCCAGT+AGG | 0.644608 | 3.2:+51312107 | None:intergenic |
| GATTGATACAGAGTTTGTGG+AGG | 0.648591 | 3.2:-51311845 | MS.gene05654:CDS |
| TGGACTAGCTGCCACTGACA+TGG | 0.668719 | 3.2:+51313011 | None:intergenic |
| CGTAGCTTGGCTCAGCATGG+TGG | 0.675136 | 3.2:+51312376 | None:intergenic |
| TTCACCAATGATGCTCATGG+AGG | 0.694223 | 3.2:-51312928 | MS.gene05654:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTTTAAAAATT+CGG | - | chr3.2:51311943-51311962 | MS.gene05654:intron | 0.0% |
| !! | AATTGTTAATATTTACAATT+TGG | - | chr3.2:51311098-51311117 | MS.gene05654:intron | 10.0% |
| !! | ATTAATTAAAGTGATATTAA+TGG | - | chr3.2:51311751-51311770 | MS.gene05654:intron | 10.0% |
| !! | CTTATTATTAAAATATTGAT+GGG | - | chr3.2:51311570-51311589 | MS.gene05654:intron | 10.0% |
| !! | TCTTATTATTAAAATATTGA+TGG | - | chr3.2:51311569-51311588 | MS.gene05654:intron | 10.0% |
| !!! | ATATAATTTTGATAAAAATG+GGG | + | chr3.2:51311437-51311456 | None:intergenic | 10.0% |
| !!! | GTAATTAATAACTTTTATTT+TGG | - | chr3.2:51311257-51311276 | MS.gene05654:intron | 10.0% |
| !!! | TAAAATTATTGAGTTTTTTA+TGG | - | chr3.2:51311600-51311619 | MS.gene05654:intron | 10.0% |
| !! | AAAATAATTATTCTTTCACT+AGG | - | chr3.2:51312598-51312617 | MS.gene05654:CDS | 15.0% |
| !! | AAATAATTATTCTTTCACTA+GGG | - | chr3.2:51312599-51312618 | MS.gene05654:CDS | 15.0% |
| !! | AAGTATTAGTATTATATTGA+TGG | - | chr3.2:51311235-51311254 | MS.gene05654:intron | 15.0% |
| !! | ATAAATCAACTTTATATTGT+AGG | - | chr3.2:51310480-51310499 | MS.gene05654:intron | 15.0% |
| !! | TAAATCAACTTTATATTGTA+GGG | - | chr3.2:51310481-51310500 | MS.gene05654:intron | 15.0% |
| !! | TGTTAGATGAATTAAAAATA+AGG | - | chr3.2:51311461-51311480 | MS.gene05654:intron | 15.0% |
| !! | TTATTCAAATTATAAATCGA+CGG | + | chr3.2:51310464-51310483 | None:intergenic | 15.0% |
| !!! | AAGAATAATTATTTTTGACT+CGG | + | chr3.2:51312593-51312612 | None:intergenic | 15.0% |
| !! | AACATATGAAATCATTTGAT+TGG | - | chr3.2:51311506-51311525 | MS.gene05654:intron | 20.0% |
| !! | ACATATGAAATCATTTGATT+GGG | - | chr3.2:51311507-51311526 | MS.gene05654:intron | 20.0% |
| !! | ATCAAATGATTTCATATGTT+AGG | + | chr3.2:51311506-51311525 | None:intergenic | 20.0% |
| !! | CATAATAAACTTAAGTTCTT+TGG | - | chr3.2:51311899-51311918 | MS.gene05654:intron | 20.0% |
| !! | CTAATAACATACTATTCTAA+GGG | - | chr3.2:51311666-51311685 | MS.gene05654:intron | 20.0% |
| !! | GCTATTATTATCTATATCTA+TGG | - | chr3.2:51310326-51310345 | MS.gene05654:intron | 20.0% |
| !! | TAATAACATACTATTCTAAG+GGG | - | chr3.2:51311667-51311686 | MS.gene05654:intron | 20.0% |
| !! | TCTAATAACATACTATTCTA+AGG | - | chr3.2:51311665-51311684 | MS.gene05654:intron | 20.0% |
| !! | TTTCTTATTATTCAAGACAA+TGG | + | chr3.2:51310868-51310887 | None:intergenic | 20.0% |
| !!! | TTTTTTATGGTATAAGTTGA+TGG | - | chr3.2:51311613-51311632 | MS.gene05654:intron | 20.0% |
| ! | ATGCTAAATGTTAACTGATT+TGG | + | chr3.2:51312149-51312168 | None:intergenic | 25.0% |
| ! | ATTAAATGACAATAGTGCAT+GGG | + | chr3.2:51312725-51312744 | None:intergenic | 25.0% |
| ! | GTCAGATGAAAGTTTATAAA+GGG | + | chr3.2:51312237-51312256 | None:intergenic | 25.0% |
| ! | TAGGCTAAAACATTGAAAAA+AGG | + | chr3.2:51311359-51311378 | None:intergenic | 25.0% |
| ! | TGGATGTAAACTCTATAAAT+TGG | + | chr3.2:51310642-51310661 | None:intergenic | 25.0% |
| ! | TGTCAGATGAAAGTTTATAA+AGG | + | chr3.2:51312238-51312257 | None:intergenic | 25.0% |
| ! | TGTCTTGAATAATAAGAAAG+AGG | - | chr3.2:51310869-51310888 | MS.gene05654:intron | 25.0% |
| ! | TTACAATTTGGTTAGAAACT+TGG | - | chr3.2:51311110-51311129 | MS.gene05654:intron | 25.0% |
| ! | TTAGAGAAAAATGATGAGAT+AGG | + | chr3.2:51312960-51312979 | None:intergenic | 25.0% |
| ! | TTCTATAATCAAAGAGAGAA+TGG | + | chr3.2:51310662-51310681 | None:intergenic | 25.0% |
| ! | TTTACATATCATTCGTGTTA+TGG | + | chr3.2:51312529-51312548 | None:intergenic | 25.0% |
| ! | TTTATATTGTAGGGAAAAGA+TGG | - | chr3.2:51310490-51310509 | MS.gene05654:intron | 25.0% |
| ! | TTTCTTCATGTGATTAACAT+TGG | - | chr3.2:51311384-51311403 | MS.gene05654:intron | 25.0% |
| !! | AATAACATACTATTCTAAGG+GGG | - | chr3.2:51311668-51311687 | MS.gene05654:intron | 25.0% |
| !! | CATTTATGTGAAAATGGTTT+TGG | - | chr3.2:51310173-51310192 | MS.gene05654:CDS | 25.0% |
| !! | TGCTAAATGTTAACTGATTT+GGG | + | chr3.2:51312148-51312167 | None:intergenic | 25.0% |
| !! | TTCAAACAAGTGACTTATTT+TGG | + | chr3.2:51311870-51311889 | None:intergenic | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | + | chr3.2:51312341-51312360 | None:intergenic | 25.0% |
| !!! | AGTTATGTTTTGGCTTTAAA+TGG | + | chr3.2:51312029-51312048 | None:intergenic | 25.0% |
| !!! | GTTATGTTTTGGCTTTAAAT+GGG | + | chr3.2:51312028-51312047 | None:intergenic | 25.0% |
| !!! | TATCTCATCATTTTTCTCTA+AGG | - | chr3.2:51312959-51312978 | MS.gene05654:CDS | 25.0% |
| !!! | TTAAATCTTCACTTTTACAG+TGG | - | chr3.2:51310291-51310310 | MS.gene05654:CDS | 25.0% |
| AATAAGTTCCAATCCAATAG+TGG | - | chr3.2:51310897-51310916 | MS.gene05654:intron | 30.0% | |
| AATTCAATCATGCACTTGAA+GGG | + | chr3.2:51312891-51312910 | None:intergenic | 30.0% | |
| ACAAGATTAACAAGCTCAAT+CGG | + | chr3.2:51310532-51310551 | None:intergenic | 30.0% | |
| ATCACATGAAGAAAACATGT+AGG | + | chr3.2:51311378-51311397 | None:intergenic | 30.0% | |
| ATTAGACCATTATATACCTG+TGG | + | chr3.2:51311651-51311670 | None:intergenic | 30.0% | |
| CATTTAGCATATGTTTGACA+TGG | - | chr3.2:51312194-51312213 | MS.gene05654:intron | 30.0% | |
| CTTGTAGTACAAGAAAAAAG+AGG | - | chr3.2:51310982-51311001 | MS.gene05654:intron | 30.0% | |
| GAAAAAAGAGGTAGATTTCA+TGG | - | chr3.2:51310994-51311013 | MS.gene05654:intron | 30.0% | |
| GATTAAATGACAATAGTGCA+TGG | + | chr3.2:51312726-51312745 | None:intergenic | 30.0% | |
| GTGAAAAAAAAAGAAGAAGC+AGG | + | chr3.2:51310610-51310629 | None:intergenic | 30.0% | |
| TAAAAATAAGGCCATAGAAG+TGG | - | chr3.2:51311473-51311492 | MS.gene05654:intron | 30.0% | |
| TAATTCAATCATGCACTTGA+AGG | + | chr3.2:51312892-51312911 | None:intergenic | 30.0% | |
| TACTTTGATTCTACATCACA+TGG | + | chr3.2:51311220-51311239 | None:intergenic | 30.0% | |
| TATAAGAACCACTATTGGAT+TGG | + | chr3.2:51310908-51310927 | None:intergenic | 30.0% | |
| TGAATTATGCATAGCAAAGA+TGG | - | chr3.2:51312905-51312924 | MS.gene05654:CDS | 30.0% | |
| TGTACTGCATATTCTTCAAA+TGG | + | chr3.2:51312846-51312865 | None:intergenic | 30.0% | |
| TTAGACCATTATATACCTGT+GGG | + | chr3.2:51311650-51311669 | None:intergenic | 30.0% | |
| TTTGTTCTATTCTCATGAAG+TGG | - | chr3.2:51312817-51312836 | MS.gene05654:intron | 30.0% | |
| ! | ACATGATGTGACATTTTCAA+AGG | + | chr3.2:51312400-51312419 | None:intergenic | 30.0% |
| ! | CATGATGTGACATTTTCAAA+GGG | + | chr3.2:51312399-51312418 | None:intergenic | 30.0% |
| ! | CTCTTTCTTTTGACATCAAA+AGG | - | chr3.2:51312340-51312359 | MS.gene05654:CDS | 30.0% |
| ! | CTTTTGATGTCAAAAGAAAG+AGG | + | chr3.2:51312342-51312361 | None:intergenic | 30.0% |
| ! | GAGTCATAATGCAAAAGTTT+TGG | + | chr3.2:51312748-51312767 | None:intergenic | 30.0% |
| ! | GTTCATATGGAGTTATGTTT+TGG | + | chr3.2:51312039-51312058 | None:intergenic | 30.0% |
| ! | TGGTTCTTAGGTTAATGTTT+TGG | + | chr3.2:51312464-51312483 | None:intergenic | 30.0% |
| !! | AAATGTTAACTGATTTGGGT+TGG | + | chr3.2:51312144-51312163 | None:intergenic | 30.0% |
| !! | CATGTTTCTAATTTTCAGTC+AGG | - | chr3.2:51312263-51312282 | MS.gene05654:intron | 30.0% |
| !! | TTATGGTATAAGTTGATGGA+TGG | - | chr3.2:51311617-51311636 | MS.gene05654:intron | 30.0% |
| AAAAATGATGAGATAGGTCG+TGG | + | chr3.2:51312954-51312973 | None:intergenic | 35.0% | |
| AAGATGGAAAGAACCTATAC+TGG | - | chr3.2:51312921-51312940 | MS.gene05654:CDS | 35.0% | |
| ACATAAATGATCCCCTAAAG+AGG | + | chr3.2:51310162-51310181 | None:intergenic | 35.0% | |
| ACGTATAATTAAGTCGTTGC+TGG | - | chr3.2:51310727-51310746 | MS.gene05654:intron | 35.0% | |
| AGAGAAGTAAAAGAAGAGAC+AGG | - | chr3.2:51311174-51311193 | MS.gene05654:intron | 35.0% | |
| AGAGGTAGATTTCATGGAAT+TGG | - | chr3.2:51311000-51311019 | MS.gene05654:intron | 35.0% | |
| AGCAAAGAAGCAAAAACTTG+AGG | + | chr3.2:51310272-51310291 | None:intergenic | 35.0% | |
| AGGCACACAATTCATTCTTT+GGG | - | chr3.2:51312283-51312302 | MS.gene05654:CDS | 35.0% | |
| CATAAATGATCCCCTAAAGA+GGG | + | chr3.2:51310161-51310180 | None:intergenic | 35.0% | |
| GAAACTGACACTGAAGAAAT+CGG | - | chr3.2:51312069-51312088 | MS.gene05654:intron | 35.0% | |
| GATAAAAATGGGGAAGTAAG+AGG | + | chr3.2:51311427-51311446 | None:intergenic | 35.0% | |
| GATTTCATGGAATTGGAGTT+TGG | - | chr3.2:51311007-51311026 | MS.gene05654:intron | 35.0% | |
| GCAAAGAAGCAAAAACTTGA+GGG | + | chr3.2:51310271-51310290 | None:intergenic | 35.0% | |
| GGGGATCATTTATGTGAAAA+TGG | - | chr3.2:51310167-51310186 | MS.gene05654:CDS | 35.0% | |
| GTAGCTATAAGAACCACTAT+TGG | + | chr3.2:51310913-51310932 | None:intergenic | 35.0% | |
| GTTTACTGGATTCCTAAAAC+AGG | - | chr3.2:51310798-51310817 | MS.gene05654:CDS | 35.0% | |
| TAAACTAGCATTACGTAGCT+TGG | + | chr3.2:51310783-51310802 | None:intergenic | 35.0% | |
| TAGACCATTATATACCTGTG+GGG | + | chr3.2:51311649-51311668 | None:intergenic | 35.0% | |
| TCAGATTGATACAGAGTTTG+TGG | - | chr3.2:51311295-51311314 | MS.gene05654:intron | 35.0% | |
| TCGTATGAAGTTTAAACCCA+AGG | - | chr3.2:51311790-51311809 | MS.gene05654:intron | 35.0% | |
| TGTACTACAAGCAACTAGAA+TGG | + | chr3.2:51310973-51310992 | None:intergenic | 35.0% | |
| ! | ACTATTCTAAGGGGGAAAAA+AGG | - | chr3.2:51311676-51311695 | MS.gene05654:intron | 35.0% |
| ! | ACTTTTACAGTGGAAGAAAC+AGG | - | chr3.2:51310301-51310320 | MS.gene05654:CDS | 35.0% |
| ! | TCTTGTTGAAGTTGCTGTTA+AGG | - | chr3.2:51310546-51310565 | MS.gene05654:intron | 35.0% |
| ! | TGTGTGTCTAGACTTGTTTA+AGG | - | chr3.2:51312637-51312656 | MS.gene05654:CDS | 35.0% |
| !! | TATAAGTTGATGGATGGCTT+GGG | - | chr3.2:51311623-51311642 | MS.gene05654:intron | 35.0% |
| AAATAAGGCCATAGAAGTGG+TGG | - | chr3.2:51311476-51311495 | MS.gene05654:intron | 40.0% | |
| ACAAAAGTGATCCTAGAGAG+AGG | + | chr3.2:51312441-51312460 | None:intergenic | 40.0% | |
| ATAATTAAGTCGTTGCTGGC+AGG | - | chr3.2:51310731-51310750 | MS.gene05654:intron | 40.0% | |
| CAGGCACACAATTCATTCTT+TGG | - | chr3.2:51312282-51312301 | MS.gene05654:CDS | 40.0% | |
| CATGAGCATCATTGGTGAAA+GGG | + | chr3.2:51310214-51310233 | None:intergenic | 40.0% | |
| CTAAGAACCGACTAATTCGA+GGG | - | chr3.2:51311974-51311993 | MS.gene05654:CDS | 40.0% | |
| CTTTCACTAGGGTAGTGTTA+AGG | - | chr3.2:51312610-51312629 | MS.gene05654:CDS | 40.0% | |
| GAGTTTCACGTTGTAACCTT+GGG | + | chr3.2:51311809-51311828 | None:intergenic | 40.0% | |
| GATTGATACAGAGTTTGTGG+AGG | - | chr3.2:51311298-51311317 | MS.gene05654:intron | 40.0% | |
| GGCTCATGCTTCTGATTAAA+TGG | + | chr3.2:51312870-51312889 | None:intergenic | 40.0% | |
| TAAGAACCGACTAATTCGAG+GGG | - | chr3.2:51311975-51311994 | MS.gene05654:CDS | 40.0% | |
| TCGGTGAGTTAGATACGTAT+CGG | + | chr3.2:51312685-51312704 | None:intergenic | 40.0% | |
| TCTTCAGTGTCAGTTTCGAT+GGG | + | chr3.2:51312066-51312085 | None:intergenic | 40.0% | |
| TGACATCAAAAGGCAAGAAC+TGG | - | chr3.2:51312350-51312369 | MS.gene05654:CDS | 40.0% | |
| TGAGTTTCACGTTGTAACCT+TGG | + | chr3.2:51311810-51311829 | None:intergenic | 40.0% | |
| TTCTTCAGTGTCAGTTTCGA+TGG | + | chr3.2:51312067-51312086 | None:intergenic | 40.0% | |
| TTTAAATGGGACTCCGTAAG+TGG | + | chr3.2:51312015-51312034 | None:intergenic | 40.0% | |
| TTTACAGTGGAAGAAACAGG+TGG | - | chr3.2:51310304-51310323 | MS.gene05654:CDS | 40.0% | |
| ! | GAATTAGTCGGTTCTTAGGT+CGG | + | chr3.2:51311972-51311991 | None:intergenic | 40.0% |
| ! | GCTACGTAATGCTAGTTTAC+TGG | - | chr3.2:51310784-51310803 | MS.gene05654:CDS | 40.0% |
| ! | GTTTTCTTCTTCCTCTCTCT+AGG | - | chr3.2:51312427-51312446 | MS.gene05654:intron | 40.0% |
| !! | AGGAGTCATTGTTGACTTGA+AGG | - | chr3.2:51310235-51310254 | MS.gene05654:CDS | 40.0% |
| !! | GTATAAGTTGATGGATGGCT+TGG | - | chr3.2:51311622-51311641 | MS.gene05654:intron | 40.0% |
| !! | TGTTGACTTGAAGGATCCTA+TGG | - | chr3.2:51310244-51310263 | MS.gene05654:CDS | 40.0% |
| !! | TTCGATGGGCTAAGTTCATA+TGG | + | chr3.2:51312052-51312071 | None:intergenic | 40.0% |
| !!! | AAACTTGGTTTTGTACCTGC+AGG | - | chr3.2:51311125-51311144 | MS.gene05654:intron | 40.0% |
| !!! | AACTTGGTTTTGTACCTGCA+GGG | - | chr3.2:51311126-51311145 | MS.gene05654:intron | 40.0% |
| ACAGAGTTTGTGGAGGTTCT+AGG | - | chr3.2:51311305-51311324 | MS.gene05654:intron | 45.0% | |
| ACGTATCTAACTCACCGACA+TGG | - | chr3.2:51312687-51312706 | MS.gene05654:intron | 45.0% | |
| ACTCCAAAATCCGAAGCACA+AGG | - | chr3.2:51312115-51312134 | MS.gene05654:CDS | 45.0% | |
| ACTGCATCAACTACTCCAGT+AGG | + | chr3.2:51311039-51311058 | None:intergenic | 45.0% | |
| ACTGGAAATTGAAGCAGCTC+AGG | - | chr3.2:51312368-51312387 | MS.gene05654:CDS | 45.0% | |
| ATTGGTCCCCTCGAATTAGT+CGG | + | chr3.2:51311984-51312003 | None:intergenic | 45.0% | |
| CATGTGTTGCGTATACGACA+CGG | - | chr3.2:51312494-51312513 | MS.gene05654:intron | 45.0% | |
| CCATGAGCATCATTGGTGAA+AGG | + | chr3.2:51310215-51310234 | None:intergenic | 45.0% | |
| CCTAAGAACCGACTAATTCG+AGG | - | chr3.2:51311973-51311992 | MS.gene05654:CDS | 45.0% | |
| CCTTTCACCAATGATGCTCA+TGG | - | chr3.2:51310212-51310231 | MS.gene05654:CDS | 45.0% | |
| CTCCAAAATCCGAAGCACAA+GGG | - | chr3.2:51312116-51312135 | MS.gene05654:CDS | 45.0% | |
| GCAAAAACTTGAGGGTCCAT+AGG | + | chr3.2:51310263-51310282 | None:intergenic | 45.0% | |
| GTATAATGCCCCAATCTGAG+AGG | + | chr3.2:51311534-51311553 | None:intergenic | 45.0% | |
| GTCGTATACGCAACACATGT+TGG | + | chr3.2:51312493-51312512 | None:intergenic | 45.0% | |
| TCGTGGACAGAATCCAGTAT+AGG | + | chr3.2:51312937-51312956 | None:intergenic | 45.0% | |
| TGATTGGGACCTCTCAGATT+GGG | - | chr3.2:51311522-51311541 | MS.gene05654:intron | 45.0% | |
| TGTAGGGAAAAGATGGTGTC+TGG | - | chr3.2:51310497-51310516 | MS.gene05654:intron | 45.0% | |
| TGTTGGAGTCGATGGTTCTT+AGG | + | chr3.2:51312476-51312495 | None:intergenic | 45.0% | |
| TTCACCAATGATGCTCATGG+AGG | - | chr3.2:51310215-51310234 | MS.gene05654:CDS | 45.0% | |
| TTGATTGGGACCTCTCAGAT+TGG | - | chr3.2:51311521-51311540 | MS.gene05654:intron | 45.0% | |
| ! | CCTCGAATTAGTCGGTTCTT+AGG | + | chr3.2:51311976-51311995 | None:intergenic | 45.0% |
| ! | TTTGGAGTGTGCTCATCTCA+AGG | + | chr3.2:51312103-51312122 | None:intergenic | 45.0% |
| !! | CTTACGCGATGAGAAGCATT+TGG | + | chr3.2:51310837-51310856 | None:intergenic | 45.0% |
| !! | TTGTGGAGGTTCTAGGATTC+AGG | - | chr3.2:51311312-51311331 | MS.gene05654:intron | 45.0% |
| !!! | AATATAATTTTGATAAAAAT+GGG | + | chr3.2:51311438-51311457 | None:intergenic | 5.0% |
| !!! | TAATATAATTTTGATAAAAA+TGG | + | chr3.2:51311439-51311458 | None:intergenic | 5.0% |
| !!! | TGTATTATTATAATTTATTT+TGG | - | chr3.2:51312789-51312808 | MS.gene05654:intron | 5.0% |
| !!! | TTTTTAAAAAATAAAATATG+TGG | + | chr3.2:51311941-51311960 | None:intergenic | 5.0% |
| AATGGGACTCCGTAAGTGGA+CGG | + | chr3.2:51312011-51312030 | None:intergenic | 50.0% | |
| ATTAAGTCGTTGCTGGCAGG+AGG | - | chr3.2:51310734-51310753 | MS.gene05654:intron | 50.0% | |
| CAAAAATCTCCTCACCCTGC+AGG | + | chr3.2:51311143-51311162 | None:intergenic | 50.0% | |
| CACCGACATGGCAAAGACAA+TGG | - | chr3.2:51312699-51312718 | MS.gene05654:intron | 50.0% | |
| CCAATTCCACCGTCCACTTA+CGG | - | chr3.2:51311999-51312018 | MS.gene05654:CDS | 50.0% | |
| CTAGTCCAGCACCCTCTTTA+GGG | - | chr3.2:51310147-51310166 | MS.gene05654:CDS | 50.0% | |
| GACTCCTCCATGAGCATCAT+TGG | + | chr3.2:51310222-51310241 | None:intergenic | 50.0% | |
| GATTGGGACCTCTCAGATTG+GGG | - | chr3.2:51311523-51311542 | MS.gene05654:intron | 50.0% | |
| GCAACACATGTTGGAGTCGA+TGG | + | chr3.2:51312484-51312503 | None:intergenic | 50.0% | |
| GCTTCTCATCGCGTAAGCAT+TGG | - | chr3.2:51310840-51310859 | MS.gene05654:CDS | 50.0% | |
| GGAGTTTGGAAGCTACCTAC+TGG | - | chr3.2:51311021-51311040 | MS.gene05654:intron | 50.0% | |
| GGCCATTGTCTTTGCCATGT+CGG | + | chr3.2:51312704-51312723 | None:intergenic | 50.0% | |
| TAGGAGCTCCACCACTTCTA+TGG | + | chr3.2:51311487-51311506 | None:intergenic | 50.0% | |
| TAGTCCAGCACCCTCTTTAG+GGG | - | chr3.2:51310148-51310167 | MS.gene05654:CDS | 50.0% | |
| TGGGCCCCACAGGTATATAA+TGG | - | chr3.2:51311642-51311661 | MS.gene05654:intron | 50.0% | |
| TTAAGTCGTTGCTGGCAGGA+GGG | - | chr3.2:51310735-51310754 | MS.gene05654:intron | 50.0% | |
| TTACGTAGCTTGGCTCAGCA+TGG | + | chr3.2:51310773-51310792 | None:intergenic | 50.0% | |
| TTGCGTATACGACACGGACA+CGG | - | chr3.2:51312500-51312519 | MS.gene05654:intron | 50.0% | |
| ! | CACCCTTGTGCTTCGGATTT+TGG | + | chr3.2:51312121-51312140 | None:intergenic | 50.0% |
| ! | GGGATTGTGCAGCCTGTTTT+AGG | + | chr3.2:51310813-51310832 | None:intergenic | 50.0% |
| !! | ACGCGATGAGAAGCATTTGG+AGG | + | chr3.2:51310834-51310853 | None:intergenic | 50.0% |
| !! | CGCGATGAGAAGCATTTGGA+GGG | + | chr3.2:51310833-51310852 | None:intergenic | 50.0% |
| CCGTAAGTGGACGGTGGAAT+TGG | + | chr3.2:51312002-51312021 | None:intergenic | 55.0% | |
| GCTAGTCCAGCACCCTCTTT+AGG | - | chr3.2:51310146-51310165 | MS.gene05654:CDS | 55.0% | |
| ! | TGATCCCCTAAAGAGGGTGC+TGG | + | chr3.2:51310155-51310174 | None:intergenic | 55.0% |
| !! | GGTTTTGTACCTGCAGGGTG+AGG | - | chr3.2:51311131-51311150 | MS.gene05654:intron | 55.0% |
| CGTAGCTTGGCTCAGCATGG+TGG | + | chr3.2:51310770-51310789 | None:intergenic | 60.0% | |
| ! | GGGTTGGCACCCTTGTGCTT+CGG | + | chr3.2:51312128-51312147 | None:intergenic | 60.0% |
| GGGACTCCGTAAGTGGACGG+TGG | + | chr3.2:51312008-51312027 | None:intergenic | 65.0% | |
| ! | ATGGATGGCTTGGGCCCCAC+AGG | - | chr3.2:51311632-51311651 | MS.gene05654:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 51310134 | 51313031 | 51310134 | ID=MS.gene05654 |
| chr3.2 | mRNA | 51310134 | 51313031 | 51310134 | ID=MS.gene05654.t1;Parent=MS.gene05654 |
| chr3.2 | exon | 51312843 | 51313031 | 51312843 | ID=MS.gene05654.t1.exon1;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51312843 | 51313031 | 51312843 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51312598 | 51312663 | 51312598 | ID=MS.gene05654.t1.exon2;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51312598 | 51312663 | 51312598 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51312275 | 51312412 | 51312275 | ID=MS.gene05654.t1.exon3;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51312275 | 51312412 | 51312275 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51312109 | 51312186 | 51312109 | ID=MS.gene05654.t1.exon4;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51312109 | 51312186 | 51312109 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51311968 | 51312018 | 51311968 | ID=MS.gene05654.t1.exon5;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51311968 | 51312018 | 51311968 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51311832 | 51311866 | 51311832 | ID=MS.gene05654.t1.exon6;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51311832 | 51311866 | 51311832 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51310776 | 51310884 | 51310776 | ID=MS.gene05654.t1.exon7;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51310776 | 51310884 | 51310776 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| chr3.2 | exon | 51310134 | 51310328 | 51310134 | ID=MS.gene05654.t1.exon8;Parent=MS.gene05654.t1 |
| chr3.2 | CDS | 51310134 | 51310328 | 51310134 | ID=cds.MS.gene05654.t1;Parent=MS.gene05654.t1 |
| Gene Sequence |
| Protein sequence |
