Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04304.t1 | XP_013460058.1 | 97.2 | 286 | 8 | 0 | 1 | 286 | 1 | 286 | 2.50E-162 | 581.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04304.t1 | Q6NPD7 | 60.5 | 258 | 97 | 1 | 24 | 281 | 18 | 270 | 4.9e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04304.t1 | A0A072UW81 | 97.2 | 286 | 8 | 0 | 1 | 286 | 1 | 286 | 1.8e-162 | 581.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04304 | MS.gene43426 | PPI |
| MS.gene04304 | MS.gene003125 | PPI |
| MS.gene04304 | MS.gene048250 | PPI |
| MS.gene04304 | MS.gene042087 | PPI |
| MS.gene04304 | MS.gene02910 | PPI |
| MS.gene04304 | MS.gene95099 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04304.t1 | MTR_3g460790 | 97.203 | 286 | 8 | 0 | 1 | 286 | 1 | 286 | 0.0 | 578 |
| MS.gene04304.t1 | MTR_3g460790 | 96.035 | 227 | 9 | 0 | 1 | 227 | 1 | 227 | 4.98e-163 | 453 |
| MS.gene04304.t1 | MTR_2g026715 | 59.091 | 264 | 108 | 0 | 23 | 286 | 56 | 319 | 5.37e-114 | 331 |
| MS.gene04304.t1 | MTR_4g133945 | 58.427 | 267 | 108 | 3 | 23 | 286 | 10 | 276 | 2.36e-110 | 320 |
| MS.gene04304.t1 | MTR_3g082770 | 57.198 | 257 | 108 | 1 | 25 | 281 | 80 | 334 | 4.43e-103 | 305 |
| MS.gene04304.t1 | MTR_8g091995 | 56.349 | 252 | 109 | 1 | 31 | 282 | 24 | 274 | 1.49e-99 | 293 |
| MS.gene04304.t1 | MTR_4g100480 | 50.190 | 263 | 130 | 1 | 25 | 286 | 91 | 353 | 4.92e-89 | 269 |
| MS.gene04304.t1 | MTR_2g026715 | 61.963 | 163 | 62 | 0 | 23 | 185 | 69 | 231 | 1.10e-70 | 218 |
| MS.gene04304.t1 | MTR_0446s0020 | 41.538 | 65 | 37 | 1 | 223 | 286 | 2 | 66 | 3.63e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04304.t1 | AT4G25434 | 62.016 | 258 | 98 | 0 | 24 | 281 | 18 | 275 | 2.38e-120 | 346 |
| MS.gene04304.t1 | AT4G25434 | 60.465 | 258 | 97 | 1 | 24 | 281 | 18 | 270 | 5.64e-115 | 332 |
| MS.gene04304.t1 | AT4G25434 | 56.140 | 285 | 98 | 1 | 24 | 281 | 18 | 302 | 1.13e-114 | 333 |
| MS.gene04304.t1 | AT4G25434 | 54.737 | 285 | 97 | 2 | 24 | 281 | 18 | 297 | 3.20e-109 | 318 |
| MS.gene04304.t1 | AT5G47650 | 56.322 | 261 | 112 | 1 | 22 | 282 | 16 | 274 | 3.96e-109 | 317 |
| MS.gene04304.t1 | AT5G47650 | 56.322 | 261 | 112 | 1 | 22 | 282 | 16 | 274 | 3.96e-109 | 317 |
| MS.gene04304.t1 | AT5G47650 | 56.322 | 261 | 112 | 1 | 22 | 282 | 16 | 274 | 3.96e-109 | 317 |
| MS.gene04304.t1 | AT5G47650 | 56.322 | 261 | 112 | 1 | 22 | 282 | 63 | 321 | 1.14e-107 | 315 |
| MS.gene04304.t1 | AT5G47650 | 56.322 | 261 | 112 | 1 | 22 | 282 | 62 | 320 | 1.21e-107 | 315 |
| MS.gene04304.t1 | AT4G25434 | 67.337 | 199 | 65 | 0 | 24 | 222 | 18 | 216 | 2.72e-97 | 285 |
| MS.gene04304.t1 | AT4G25434 | 63.000 | 200 | 74 | 0 | 82 | 281 | 31 | 230 | 1.89e-92 | 273 |
| MS.gene04304.t1 | AT4G25434 | 63.000 | 200 | 74 | 0 | 82 | 281 | 31 | 230 | 1.89e-92 | 273 |
| MS.gene04304.t1 | AT4G25434 | 65.327 | 199 | 64 | 1 | 24 | 222 | 18 | 211 | 5.21e-92 | 271 |
| MS.gene04304.t1 | AT4G25434 | 59.292 | 226 | 65 | 1 | 24 | 222 | 18 | 243 | 8.76e-92 | 272 |
| MS.gene04304.t1 | AT4G25434 | 61.000 | 200 | 73 | 1 | 82 | 281 | 31 | 225 | 4.49e-87 | 259 |
| MS.gene04304.t1 | AT5G47240 | 51.724 | 261 | 124 | 2 | 25 | 283 | 95 | 355 | 5.18e-87 | 264 |
| MS.gene04304.t1 | AT4G12720 | 49.807 | 259 | 127 | 3 | 23 | 279 | 8 | 265 | 2.44e-86 | 259 |
| MS.gene04304.t1 | AT4G12720 | 49.807 | 259 | 127 | 3 | 23 | 279 | 8 | 265 | 2.44e-86 | 259 |
| MS.gene04304.t1 | AT4G12720 | 49.807 | 259 | 127 | 3 | 23 | 279 | 8 | 265 | 2.44e-86 | 259 |
| MS.gene04304.t1 | AT2G04450 | 50.397 | 252 | 121 | 4 | 31 | 279 | 16 | 266 | 2.71e-82 | 249 |
| MS.gene04304.t1 | AT5G47240 | 46.897 | 290 | 123 | 3 | 25 | 283 | 95 | 384 | 3.89e-81 | 250 |
| MS.gene04304.t1 | AT2G04430 | 48.760 | 242 | 119 | 3 | 23 | 259 | 8 | 249 | 2.49e-78 | 239 |
| MS.gene04304.t1 | AT4G25434 | 55.238 | 210 | 67 | 1 | 99 | 281 | 1 | 210 | 2.61e-78 | 237 |
| MS.gene04304.t1 | AT4G12720 | 43.144 | 299 | 127 | 4 | 23 | 279 | 8 | 305 | 4.94e-78 | 240 |
| MS.gene04304.t1 | AT2G04430 | 48.760 | 242 | 119 | 3 | 23 | 259 | 27 | 268 | 1.05e-77 | 238 |
| MS.gene04304.t1 | AT4G25434 | 64.497 | 169 | 60 | 0 | 24 | 192 | 18 | 186 | 5.86e-76 | 231 |
| MS.gene04304.t1 | AT4G25434 | 55.612 | 196 | 60 | 1 | 24 | 192 | 18 | 213 | 2.21e-70 | 218 |
| MS.gene04304.t1 | AT4G12720 | 52.475 | 202 | 94 | 2 | 23 | 222 | 8 | 209 | 1.45e-68 | 212 |
| MS.gene04304.t1 | AT4G12720 | 49.727 | 183 | 89 | 3 | 99 | 279 | 1 | 182 | 7.69e-55 | 176 |
| MS.gene04304.t1 | AT2G04440 | 48.252 | 143 | 72 | 1 | 23 | 163 | 8 | 150 | 2.52e-40 | 139 |
Find 51 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCACACAATTCATTCTT+TGG | 0.205477 | 3.4:-55984702 | MS.gene04304:CDS |
| GCTAGTCCAGCACCCTCTTT+AGG | 0.227618 | 3.4:-55986838 | MS.gene04304:CDS |
| GGGGATCATTTATGTGAAAA+TGG | 0.233923 | 3.4:-55986817 | MS.gene04304:CDS |
| GGCTCATGCTTCTGATTAAA+TGG | 0.237624 | 3.4:+55984117 | None:intergenic |
| TTGTGGAGGTTCTAGGATTC+AGG | 0.251993 | 3.4:-55985673 | MS.gene04304:intron |
| CATTTATGTGAAAATGGTTT+TGG | 0.255040 | 3.4:-55986811 | MS.gene04304:CDS |
| ACAGAGTTTGTGGAGGTTCT+AGG | 0.270554 | 3.4:-55985680 | MS.gene04304:CDS |
| GCTATGTAATGCTAGTTTAC+TGG | 0.281466 | 3.4:-55986201 | MS.gene04304:CDS |
| AGAGGTAGATTTCATGGAAT+TGG | 0.339858 | 3.4:-55985985 | MS.gene04304:CDS |
| TCTTGTTGAAGTTGCTGTTA+AGG | 0.360722 | 3.4:-55986438 | MS.gene04304:intron |
| CTAGTCCAGCACCCTCTTTA+GGG | 0.368451 | 3.4:-55986837 | MS.gene04304:CDS |
| AGGCACACAATTCATTCTTT+GGG | 0.390186 | 3.4:-55984701 | MS.gene04304:CDS |
| GACTCCTCCATGAGCATCAT+TGG | 0.392578 | 3.4:+55986765 | None:intergenic |
| CTTACGCGATGAGAAGCATT+TGG | 0.402459 | 3.4:+55986151 | None:intergenic |
| GATTTCATGGAATTGGTGTT+TGG | 0.413759 | 3.4:-55985978 | MS.gene04304:CDS |
| TGACATCAAAAGGCAAGAAC+TGG | 0.415408 | 3.4:-55984634 | MS.gene04304:CDS |
| TAATTCAATCATGCACTTGA+AGG | 0.415526 | 3.4:+55984095 | None:intergenic |
| TGAATTATGCATAGCAAAGA+TGG | 0.416842 | 3.4:-55984079 | MS.gene04304:CDS |
| TCAGATTGATACAGAGTTTG+TGG | 0.426153 | 3.4:-55985690 | MS.gene04304:intron |
| AAGATGGAAAGAGCCTATAC+TGG | 0.426855 | 3.4:-55984063 | MS.gene04304:CDS |
| TGTACTGCATATTCTTCAAA+TGG | 0.437066 | 3.4:+55984141 | None:intergenic |
| TTTATATTGTAGGGAAAAGA+TGG | 0.444227 | 3.4:-55986494 | MS.gene04304:intron |
| TGTAGGGAAAAGATGGTGTC+TGG | 0.455256 | 3.4:-55986487 | MS.gene04304:intron |
| AGAGAAGTAAAAGAAGAGAC+AGG | 0.470591 | 3.4:-55985811 | MS.gene04304:CDS |
| GTTTACTGGATTCCTAAAAC+AGG | 0.473397 | 3.4:-55986187 | MS.gene04304:CDS |
| ACTGGAAATTGAAGCAGCTC+AGG | 0.493703 | 3.4:-55984616 | MS.gene04304:intron |
| CCTTTCACCAATGATGCTCA+TGG | 0.494329 | 3.4:-55986772 | MS.gene04304:CDS |
| TGATCCCCTAAAGAGGGTGC+TGG | 0.499053 | 3.4:+55986832 | None:intergenic |
| CATGAGCATCATTGGTGAAA+GGG | 0.499944 | 3.4:+55986773 | None:intergenic |
| TAAACTAGCATTACATAGCT+TGG | 0.500479 | 3.4:+55986205 | None:intergenic |
| AGGAGTCATTGTTGACTTGA+AGG | 0.501447 | 3.4:-55986749 | MS.gene04304:CDS |
| ACAAGATTAACAAGCTCAAT+CGG | 0.506783 | 3.4:+55986455 | None:intergenic |
| TGTCTTGAATGCTAAGAAAG+AGG | 0.530627 | 3.4:-55986116 | MS.gene04304:intron |
| GCTTCTCATCGCGTAAGCAT+TGG | 0.536106 | 3.4:-55986145 | MS.gene04304:CDS |
| CCATGAGCATCATTGGTGAA+AGG | 0.537836 | 3.4:+55986772 | None:intergenic |
| ACATAAATGATCCCCTAAAG+AGG | 0.543892 | 3.4:+55986825 | None:intergenic |
| GGTGTTTGGAAGCTACCTAC+TGG | 0.547616 | 3.4:-55985964 | MS.gene04304:CDS |
| TTTCTTAGCATTCAAGACAA+TGG | 0.564700 | 3.4:+55986120 | None:intergenic |
| TCGTGGACAGAATCCAGTAT+AGG | 0.570284 | 3.4:+55984050 | None:intergenic |
| AATTCAATCATGCACTTGAA+GGG | 0.570928 | 3.4:+55984096 | None:intergenic |
| ACGCGATGAGAAGCATTTGG+AGG | 0.576903 | 3.4:+55986154 | None:intergenic |
| CATAAATGATCCCCTAAAGA+GGG | 0.599625 | 3.4:+55986826 | None:intergenic |
| AGACTCAAGAAGACTTGTCA+AGG | 0.602531 | 3.4:+55983971 | None:intergenic |
| TCAGTTTCAGTCCATGTCAG+TGG | 0.617237 | 3.4:-55986863 | None:intergenic |
| TAGTCCAGCACCCTCTTTAG+GGG | 0.641140 | 3.4:-55986836 | MS.gene04304:CDS |
| TTACATAGCTTGGCTCAGCA+TGG | 0.641187 | 3.4:+55986215 | None:intergenic |
| ACTGCATCAACTACTCCAGT+AGG | 0.644608 | 3.4:+55985949 | None:intergenic |
| GATTGATACAGAGTTTGTGG+AGG | 0.648591 | 3.4:-55985687 | MS.gene04304:CDS |
| TGGACTAGCTGCCACTGACA+TGG | 0.668719 | 3.4:+55986852 | None:intergenic |
| CATAGCTTGGCTCAGCATGG+TGG | 0.686666 | 3.4:+55986218 | None:intergenic |
| TTCACCAATGATGCTCATGG+AGG | 0.694223 | 3.4:-55986769 | MS.gene04304:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTTTAAAAATT+CGG | - | chr3.4:55985786-55985805 | MS.gene04304:intron | 0.0% |
| !! | AATTGTTAATATTTACAATT+TGG | - | chr3.4:55984938-55984957 | MS.gene04304:intron | 10.0% |
| !! | ATTAATTAAAGTGATATTAA+TGG | - | chr3.4:55985594-55985613 | MS.gene04304:intron | 10.0% |
| !! | CTTATTATTAAAATATTGAT+GGG | - | chr3.4:55985412-55985431 | MS.gene04304:intron | 10.0% |
| !! | TCTTATTATTAAAATATTGA+TGG | - | chr3.4:55985411-55985430 | MS.gene04304:intron | 10.0% |
| !!! | ATATAATTTTGATAAAAATG+GGG | + | chr3.4:55985279-55985298 | None:intergenic | 10.0% |
| !!! | GTAATTAATAACTTTTATTT+TGG | - | chr3.4:55985097-55985116 | MS.gene04304:intron | 10.0% |
| !!! | TAAAATTATTGAGTTTTTTA+TGG | - | chr3.4:55985442-55985461 | MS.gene04304:intron | 10.0% |
| !! | AAAATAATTATTCTTTCACT+AGG | - | chr3.4:55986439-55986458 | MS.gene04304:CDS | 15.0% |
| !! | AAATAATTATTCTTTCACTA+GGG | - | chr3.4:55986440-55986459 | MS.gene04304:CDS | 15.0% |
| !! | AAGTATTAGTATTATATTGA+TGG | - | chr3.4:55985075-55985094 | MS.gene04304:intron | 15.0% |
| !! | ATAAATCAACTTTATATTGT+AGG | - | chr3.4:55984321-55984340 | MS.gene04304:intron | 15.0% |
| !! | TAAATCAACTTTATATTGTA+GGG | - | chr3.4:55984322-55984341 | MS.gene04304:intron | 15.0% |
| !! | TGTTAGATGAATTAAAAATA+AGG | - | chr3.4:55985303-55985322 | MS.gene04304:intron | 15.0% |
| !! | TTATTCAAATTATAAATCGA+CGG | + | chr3.4:55984305-55984324 | None:intergenic | 15.0% |
| !!! | AAGAATAATTATTTTTGACT+CGG | + | chr3.4:55986434-55986453 | None:intergenic | 15.0% |
| !! | AACATATGAAATCATTTGAT+TGG | - | chr3.4:55985348-55985367 | MS.gene04304:intron | 20.0% |
| !! | ACATATGAAATCATTTGATT+GGG | - | chr3.4:55985349-55985368 | MS.gene04304:intron | 20.0% |
| !! | ATCAAATGATTTCATATGTT+AGG | + | chr3.4:55985348-55985367 | None:intergenic | 20.0% |
| !! | CATAATAAACTTAAGTTCTT+TGG | - | chr3.4:55985742-55985761 | MS.gene04304:intron | 20.0% |
| !! | CTAATAACATACTATTCTAA+GGG | - | chr3.4:55985508-55985527 | MS.gene04304:intron | 20.0% |
| !! | GCTATTATTATCTATATCTA+TGG | - | chr3.4:55984167-55984186 | MS.gene04304:intron | 20.0% |
| !! | TAATAACATACTATTCTAAG+GGG | - | chr3.4:55985509-55985528 | MS.gene04304:intron | 20.0% |
| !! | TCTAATAACATACTATTCTA+AGG | - | chr3.4:55985507-55985526 | MS.gene04304:intron | 20.0% |
| !!! | TTTTTTATGGTATAAGTTGA+TGG | - | chr3.4:55985455-55985474 | MS.gene04304:intron | 20.0% |
| ! | ATGCTAAATGTTAACTGATT+TGG | + | chr3.4:55985992-55986011 | None:intergenic | 25.0% |
| ! | ATTAAATGACAATAGTGCAT+GGG | + | chr3.4:55986566-55986585 | None:intergenic | 25.0% |
| ! | GTCAGATGAAAGTTTATAAA+GGG | + | chr3.4:55986078-55986097 | None:intergenic | 25.0% |
| ! | TAGGCTAAAACATTGAAAAA+AGG | + | chr3.4:55985199-55985218 | None:intergenic | 25.0% |
| ! | TATAAATTGGAAACAAGTTG+TGG | + | chr3.4:55984469-55984488 | None:intergenic | 25.0% |
| ! | TGGATGTAAACTCTATAAAT+TGG | + | chr3.4:55984482-55984501 | None:intergenic | 25.0% |
| ! | TGTCAGATGAAAGTTTATAA+AGG | + | chr3.4:55986079-55986098 | None:intergenic | 25.0% |
| ! | TTACAATTTGGTTAGAAACT+TGG | - | chr3.4:55984950-55984969 | MS.gene04304:intron | 25.0% |
| ! | TTAGAGAAAAATGATGAGAT+AGG | + | chr3.4:55986801-55986820 | None:intergenic | 25.0% |
| ! | TTCTATAATCAAAGAGAGAA+TGG | + | chr3.4:55984502-55984521 | None:intergenic | 25.0% |
| ! | TTTACATATCATTCGTGTTA+TGG | + | chr3.4:55986370-55986389 | None:intergenic | 25.0% |
| ! | TTTATATTGTAGGGAAAAGA+TGG | - | chr3.4:55984331-55984350 | MS.gene04304:intron | 25.0% |
| ! | TTTCTTCATGTGATTAACAT+TGG | - | chr3.4:55985224-55985243 | MS.gene04304:intron | 25.0% |
| !! | AATAACATACTATTCTAAGG+GGG | - | chr3.4:55985510-55985529 | MS.gene04304:intron | 25.0% |
| !! | CATTTATGTGAAAATGGTTT+TGG | - | chr3.4:55984014-55984033 | MS.gene04304:CDS | 25.0% |
| !! | TGCTAAATGTTAACTGATTT+GGG | + | chr3.4:55985991-55986010 | None:intergenic | 25.0% |
| !! | TTCAAACAAGTGACTTATTT+TGG | + | chr3.4:55985713-55985732 | None:intergenic | 25.0% |
| !! | TTTTGATGTCAAAAGAAAGA+GGG | + | chr3.4:55986182-55986201 | None:intergenic | 25.0% |
| !!! | AGTTATGTTTTGGCTTTAAA+TGG | + | chr3.4:55985872-55985891 | None:intergenic | 25.0% |
| !!! | GTTATGTTTTGGCTTTAAAT+GGG | + | chr3.4:55985871-55985890 | None:intergenic | 25.0% |
| !!! | TATCTCATCATTTTTCTCTA+AGG | - | chr3.4:55986800-55986819 | MS.gene04304:CDS | 25.0% |
| !!! | TTAAATCTTCACTTTTACAG+TGG | - | chr3.4:55984132-55984151 | MS.gene04304:CDS | 25.0% |
| AATTCAATCATGCACTTGAA+GGG | + | chr3.4:55986732-55986751 | None:intergenic | 30.0% | |
| ACAAGATTAACAAGCTCAAT+CGG | + | chr3.4:55984373-55984392 | None:intergenic | 30.0% | |
| ACTTATAATTAAGTCGTTGC+TGG | - | chr3.4:55984567-55984586 | MS.gene04304:intron | 30.0% | |
| ATCACATGAAGAAAACATGT+AGG | + | chr3.4:55985218-55985237 | None:intergenic | 30.0% | |
| CATTTAGCATATGTTTGACA+TGG | - | chr3.4:55986035-55986054 | MS.gene04304:intron | 30.0% | |
| CTTGTAGTACAAGAAAAAAG+AGG | - | chr3.4:55984822-55984841 | MS.gene04304:intron | 30.0% | |
| GAAAAAAGAGGTAGATTTCA+TGG | - | chr3.4:55984834-55984853 | MS.gene04304:intron | 30.0% | |
| GATTAAATGACAATAGTGCA+TGG | + | chr3.4:55986567-55986586 | None:intergenic | 30.0% | |
| GTAGCTATAAGAATCACTAT+TGG | + | chr3.4:55984753-55984772 | None:intergenic | 30.0% | |
| TAAAAATAAGGCCATAGAAG+TGG | - | chr3.4:55985315-55985334 | MS.gene04304:intron | 30.0% | |
| TAAACTAGCATTACATAGCT+TGG | + | chr3.4:55984623-55984642 | None:intergenic | 30.0% | |
| TAATTCAATCATGCACTTGA+AGG | + | chr3.4:55986733-55986752 | None:intergenic | 30.0% | |
| TACTTTGATTCTACATCACA+TGG | + | chr3.4:55985060-55985079 | None:intergenic | 30.0% | |
| TGAATTATGCATAGCAAAGA+TGG | - | chr3.4:55986746-55986765 | MS.gene04304:CDS | 30.0% | |
| TGTACTGCATATTCTTCAAA+TGG | + | chr3.4:55986687-55986706 | None:intergenic | 30.0% | |
| TTTCTTAGCATTCAAGACAA+TGG | + | chr3.4:55984708-55984727 | None:intergenic | 30.0% | |
| TTTGTTCTATTCTCATGAAG+TGG | - | chr3.4:55986658-55986677 | MS.gene04304:intron | 30.0% | |
| ! | ACATGATGTGACATTTTCAA+AGG | + | chr3.4:55986241-55986260 | None:intergenic | 30.0% |
| ! | CATGATGTGACATTTTCAAA+GGG | + | chr3.4:55986240-55986259 | None:intergenic | 30.0% |
| ! | CTCTTTCTTTTGACATCAAA+AGG | - | chr3.4:55986181-55986200 | MS.gene04304:CDS | 30.0% |
| ! | CTTTTGATGTCAAAAGAAAG+AGG | + | chr3.4:55986183-55986202 | None:intergenic | 30.0% |
| ! | GAGTCATAATGCAAAAGTTT+TGG | + | chr3.4:55986589-55986608 | None:intergenic | 30.0% |
| ! | GTTCATATGGAGTTATGTTT+TGG | + | chr3.4:55985882-55985901 | None:intergenic | 30.0% |
| ! | TGGTTCTTAGGTTAATGTTT+TGG | + | chr3.4:55986305-55986324 | None:intergenic | 30.0% |
| !! | AAATGTTAACTGATTTGGGT+TGG | + | chr3.4:55985987-55986006 | None:intergenic | 30.0% |
| !! | CATGTTTCTAATTTTCAGTC+AGG | - | chr3.4:55986104-55986123 | MS.gene04304:intron | 30.0% |
| !! | TTATGGTATAAGTTGATGGA+TGG | - | chr3.4:55985459-55985478 | MS.gene04304:intron | 30.0% |
| AAAAATGATGAGATAGGTCG+TGG | + | chr3.4:55986795-55986814 | None:intergenic | 35.0% | |
| ACATAAATGATCCCCTAAAG+AGG | + | chr3.4:55984003-55984022 | None:intergenic | 35.0% | |
| AGAGAAGTAAAAGAAGAGAC+AGG | - | chr3.4:55985014-55985033 | MS.gene04304:intron | 35.0% | |
| AGAGGTAGATTTCATGGAAT+TGG | - | chr3.4:55984840-55984859 | MS.gene04304:intron | 35.0% | |
| AGCAAAGAAGCAAAAACTTG+AGG | + | chr3.4:55984113-55984132 | None:intergenic | 35.0% | |
| AGGCACACAATTCATTCTTT+GGG | - | chr3.4:55986124-55986143 | MS.gene04304:CDS | 35.0% | |
| ATTAGACCATTATATCCCTG+TGG | + | chr3.4:55985493-55985512 | None:intergenic | 35.0% | |
| CATAAATGATCCCCTAAAGA+GGG | + | chr3.4:55984002-55984021 | None:intergenic | 35.0% | |
| GAAACTGACACTGAAGAAAT+CGG | - | chr3.4:55985912-55985931 | MS.gene04304:intron | 35.0% | |
| GCAAAGAAGCAAAAACTTGA+GGG | + | chr3.4:55984112-55984131 | None:intergenic | 35.0% | |
| GGGGATCATTTATGTGAAAA+TGG | - | chr3.4:55984008-55984027 | MS.gene04304:CDS | 35.0% | |
| GTTTACTGGATTCCTAAAAC+AGG | - | chr3.4:55984638-55984657 | MS.gene04304:CDS | 35.0% | |
| TCAGATTGATACAGAGTTTG+TGG | - | chr3.4:55985135-55985154 | MS.gene04304:intron | 35.0% | |
| TCGTATGAAGTTTAAACCCA+AGG | - | chr3.4:55985633-55985652 | MS.gene04304:intron | 35.0% | |
| TGTACTACAAGCAACTAGAA+TGG | + | chr3.4:55984813-55984832 | None:intergenic | 35.0% | |
| TGTCTTGAATGCTAAGAAAG+AGG | - | chr3.4:55984709-55984728 | MS.gene04304:intron | 35.0% | |
| TTAGACCATTATATCCCTGT+GGG | + | chr3.4:55985492-55985511 | None:intergenic | 35.0% | |
| ! | ACTATTCTAAGGGGGAAAAA+AGG | - | chr3.4:55985518-55985537 | MS.gene04304:intron | 35.0% |
| ! | ACTTTTACAGTGGAAGAAAC+AGG | - | chr3.4:55984142-55984161 | MS.gene04304:CDS | 35.0% |
| ! | GATTTCATGGAATTGGTGTT+TGG | - | chr3.4:55984847-55984866 | MS.gene04304:intron | 35.0% |
| ! | GCTATGTAATGCTAGTTTAC+TGG | - | chr3.4:55984624-55984643 | MS.gene04304:CDS | 35.0% |
| ! | TCTTGTTGAAGTTGCTGTTA+AGG | - | chr3.4:55984387-55984406 | MS.gene04304:intron | 35.0% |
| ! | TGTGTGTCTAGACTTGTTTA+AGG | - | chr3.4:55986478-55986497 | MS.gene04304:CDS | 35.0% |
| !! | TATAAGTTGATGGATGGCTT+GGG | - | chr3.4:55985465-55985484 | MS.gene04304:intron | 35.0% |
| AAATAAGGCCATAGAAGTGG+TGG | - | chr3.4:55985318-55985337 | MS.gene04304:intron | 40.0% | |
| AAGATGGAAAGAGCCTATAC+TGG | - | chr3.4:55986762-55986781 | MS.gene04304:CDS | 40.0% | |
| ACAAAAGTGATCCTAGAGAG+AGG | + | chr3.4:55986282-55986301 | None:intergenic | 40.0% | |
| ATAATTAAGTCGTTGCTGGC+AGG | - | chr3.4:55984571-55984590 | MS.gene04304:intron | 40.0% | |
| CAGGCACACAATTCATTCTT+TGG | - | chr3.4:55986123-55986142 | MS.gene04304:CDS | 40.0% | |
| CATGAGCATCATTGGTGAAA+GGG | + | chr3.4:55984055-55984074 | None:intergenic | 40.0% | |
| CTAAGAACCGACTAATTCGA+GGG | - | chr3.4:55985817-55985836 | MS.gene04304:CDS | 40.0% | |
| CTTTCACTAGGGTAGTGTTA+AGG | - | chr3.4:55986451-55986470 | MS.gene04304:CDS | 40.0% | |
| GAGTTTCACGTTGTAACCTT+GGG | + | chr3.4:55985652-55985671 | None:intergenic | 40.0% | |
| GATTGATACAGAGTTTGTGG+AGG | - | chr3.4:55985138-55985157 | MS.gene04304:intron | 40.0% | |
| GCAAAAACTTGAGGGTCTAT+AGG | + | chr3.4:55984104-55984123 | None:intergenic | 40.0% | |
| GGCTCATGCTTCTGATTAAA+TGG | + | chr3.4:55986711-55986730 | None:intergenic | 40.0% | |
| TAAGAACCGACTAATTCGAG+GGG | - | chr3.4:55985818-55985837 | MS.gene04304:CDS | 40.0% | |
| TAGACCATTATATCCCTGTG+GGG | + | chr3.4:55985491-55985510 | None:intergenic | 40.0% | |
| TCGGTGAGTTAGATACGTAT+CGG | + | chr3.4:55986526-55986545 | None:intergenic | 40.0% | |
| TCTTCAGTGTCAGTTTCGAT+GGG | + | chr3.4:55985909-55985928 | None:intergenic | 40.0% | |
| TGACATCAAAAGGCAAGAAC+TGG | - | chr3.4:55986191-55986210 | MS.gene04304:CDS | 40.0% | |
| TGAGTTTCACGTTGTAACCT+TGG | + | chr3.4:55985653-55985672 | None:intergenic | 40.0% | |
| TGTGGAAAAAAAGAAGCAGC+AGG | + | chr3.4:55984451-55984470 | None:intergenic | 40.0% | |
| TTCTTCAGTGTCAGTTTCGA+TGG | + | chr3.4:55985910-55985929 | None:intergenic | 40.0% | |
| TTTAAATGGGACTCCGTAAG+TGG | + | chr3.4:55985858-55985877 | None:intergenic | 40.0% | |
| TTTACAGTGGAAGAAACAGG+TGG | - | chr3.4:55984145-55984164 | MS.gene04304:CDS | 40.0% | |
| ! | GAATTAGTCGGTTCTTAGGT+CGG | + | chr3.4:55985815-55985834 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTTCCTCTCTCT+AGG | - | chr3.4:55986268-55986287 | MS.gene04304:intron | 40.0% |
| !! | AGGAGTCATTGTTGACTTGA+AGG | - | chr3.4:55984076-55984095 | MS.gene04304:CDS | 40.0% |
| !! | GTATAAGTTGATGGATGGCT+TGG | - | chr3.4:55985464-55985483 | MS.gene04304:intron | 40.0% |
| !! | TTCGATGGGCTAAGTTCATA+TGG | + | chr3.4:55985895-55985914 | None:intergenic | 40.0% |
| !!! | AAACTTGGTTTTGTACCTGC+AGG | - | chr3.4:55984965-55984984 | MS.gene04304:intron | 40.0% |
| !!! | AACTTGGTTTTGTACCTGCA+GGG | - | chr3.4:55984966-55984985 | MS.gene04304:intron | 40.0% |
| ACAGAGTTTGTGGAGGTTCT+AGG | - | chr3.4:55985145-55985164 | MS.gene04304:intron | 45.0% | |
| ACGTATCTAACTCACCGACA+TGG | - | chr3.4:55986528-55986547 | MS.gene04304:intron | 45.0% | |
| ACTCCAAAATCCGAAGCACA+AGG | - | chr3.4:55985958-55985977 | MS.gene04304:CDS | 45.0% | |
| ACTGCATCAACTACTCCAGT+AGG | + | chr3.4:55984879-55984898 | None:intergenic | 45.0% | |
| ACTGGAAATTGAAGCAGCTC+AGG | - | chr3.4:55986209-55986228 | MS.gene04304:CDS | 45.0% | |
| ATTGGTCCCCTCGAATTAGT+CGG | + | chr3.4:55985827-55985846 | None:intergenic | 45.0% | |
| CATGTGTTGCGTATACGACA+CGG | - | chr3.4:55986335-55986354 | MS.gene04304:intron | 45.0% | |
| CCATGAGCATCATTGGTGAA+AGG | + | chr3.4:55984056-55984075 | None:intergenic | 45.0% | |
| CCTAAGAACCGACTAATTCG+AGG | - | chr3.4:55985816-55985835 | MS.gene04304:CDS | 45.0% | |
| CCTTTCACCAATGATGCTCA+TGG | - | chr3.4:55984053-55984072 | MS.gene04304:CDS | 45.0% | |
| CTCCAAAATCCGAAGCACAA+GGG | - | chr3.4:55985959-55985978 | MS.gene04304:CDS | 45.0% | |
| GTATAATGCCCCAATCTGAG+AGG | + | chr3.4:55985376-55985395 | None:intergenic | 45.0% | |
| GTCGTATACGCAACACATGT+TGG | + | chr3.4:55986334-55986353 | None:intergenic | 45.0% | |
| TCGTGGACAGAATCCAGTAT+AGG | + | chr3.4:55986778-55986797 | None:intergenic | 45.0% | |
| TGATTGGGACCTCTCAGATT+GGG | - | chr3.4:55985364-55985383 | MS.gene04304:intron | 45.0% | |
| TGTAGGGAAAAGATGGTGTC+TGG | - | chr3.4:55984338-55984357 | MS.gene04304:intron | 45.0% | |
| TGTTGGAGTCGATGGTTCTT+AGG | + | chr3.4:55986317-55986336 | None:intergenic | 45.0% | |
| TTACATAGCTTGGCTCAGCA+TGG | + | chr3.4:55984613-55984632 | None:intergenic | 45.0% | |
| TTCACCAATGATGCTCATGG+AGG | - | chr3.4:55984056-55984075 | MS.gene04304:CDS | 45.0% | |
| TTGATTGGGACCTCTCAGAT+TGG | - | chr3.4:55985363-55985382 | MS.gene04304:intron | 45.0% | |
| ! | CCTCGAATTAGTCGGTTCTT+AGG | + | chr3.4:55985819-55985838 | None:intergenic | 45.0% |
| ! | GGAATTGTGCAGCCTGTTTT+AGG | + | chr3.4:55984653-55984672 | None:intergenic | 45.0% |
| ! | TTTGGAGTGTGCTCATCTCA+AGG | + | chr3.4:55985946-55985965 | None:intergenic | 45.0% |
| !! | CTTACGCGATGAGAAGCATT+TGG | + | chr3.4:55984677-55984696 | None:intergenic | 45.0% |
| !! | TTGTGGAGGTTCTAGGATTC+AGG | - | chr3.4:55985152-55985171 | MS.gene04304:intron | 45.0% |
| !!! | AATATAATTTTGATAAAAAT+GGG | + | chr3.4:55985280-55985299 | None:intergenic | 5.0% |
| !!! | TAATATAATTTTGATAAAAA+TGG | + | chr3.4:55985281-55985300 | None:intergenic | 5.0% |
| !!! | TGTATTATTATAATTTATTT+TGG | - | chr3.4:55986630-55986649 | MS.gene04304:intron | 5.0% |
| !!! | TTTTTAAAAAATAAAATATG+TGG | + | chr3.4:55985784-55985803 | None:intergenic | 5.0% |
| AATGGGACTCCGTAAGTGGA+CGG | + | chr3.4:55985854-55985873 | None:intergenic | 50.0% | |
| ATTAAGTCGTTGCTGGCAGG+AGG | - | chr3.4:55984574-55984593 | MS.gene04304:intron | 50.0% | |
| CAAAAATCTCCTCACCCTGC+AGG | + | chr3.4:55984983-55985002 | None:intergenic | 50.0% | |
| CACCGACATGGCAAAGACAA+TGG | - | chr3.4:55986540-55986559 | MS.gene04304:intron | 50.0% | |
| CCAATTCCACCGTCCACTTA+CGG | - | chr3.4:55985842-55985861 | MS.gene04304:intron | 50.0% | |
| CTAGTCCAGCACCCTCTTTA+GGG | - | chr3.4:55983988-55984007 | MS.gene04304:CDS | 50.0% | |
| GACTCCTCCATGAGCATCAT+TGG | + | chr3.4:55984063-55984082 | None:intergenic | 50.0% | |
| GATTGGGACCTCTCAGATTG+GGG | - | chr3.4:55985365-55985384 | MS.gene04304:intron | 50.0% | |
| GCAACACATGTTGGAGTCGA+TGG | + | chr3.4:55986325-55986344 | None:intergenic | 50.0% | |
| GCTTCTCATCGCGTAAGCAT+TGG | - | chr3.4:55984680-55984699 | MS.gene04304:CDS | 50.0% | |
| GGCCATTGTCTTTGCCATGT+CGG | + | chr3.4:55986545-55986564 | None:intergenic | 50.0% | |
| GGTGTTTGGAAGCTACCTAC+TGG | - | chr3.4:55984861-55984880 | MS.gene04304:intron | 50.0% | |
| TAGGAGCTCCACCACTTCTA+TGG | + | chr3.4:55985329-55985348 | None:intergenic | 50.0% | |
| TAGTCCAGCACCCTCTTTAG+GGG | - | chr3.4:55983989-55984008 | MS.gene04304:CDS | 50.0% | |
| TTAAGTCGTTGCTGGCAGGA+GGG | - | chr3.4:55984575-55984594 | MS.gene04304:intron | 50.0% | |
| TTGCGTATACGACACGGACA+CGG | - | chr3.4:55986341-55986360 | MS.gene04304:intron | 50.0% | |
| ! | CACCCTTGTGCTTCGGATTT+TGG | + | chr3.4:55985964-55985983 | None:intergenic | 50.0% |
| !! | ACGCGATGAGAAGCATTTGG+AGG | + | chr3.4:55984674-55984693 | None:intergenic | 50.0% |
| CATAGCTTGGCTCAGCATGG+TGG | + | chr3.4:55984610-55984629 | None:intergenic | 55.0% | |
| CCGTAAGTGGACGGTGGAAT+TGG | + | chr3.4:55985845-55985864 | None:intergenic | 55.0% | |
| GCTAGTCCAGCACCCTCTTT+AGG | - | chr3.4:55983987-55984006 | MS.gene04304:CDS | 55.0% | |
| TGGGCCCCACAGGGATATAA+TGG | - | chr3.4:55985484-55985503 | MS.gene04304:intron | 55.0% | |
| ! | TGATCCCCTAAAGAGGGTGC+TGG | + | chr3.4:55983996-55984015 | None:intergenic | 55.0% |
| !! | GGTTTTGTACCTGCAGGGTG+AGG | - | chr3.4:55984971-55984990 | MS.gene04304:intron | 55.0% |
| ! | GGGTTGGCACCCTTGTGCTT+CGG | + | chr3.4:55985971-55985990 | None:intergenic | 60.0% |
| GGGACTCCGTAAGTGGACGG+TGG | + | chr3.4:55985851-55985870 | None:intergenic | 65.0% | |
| ! | ATGGATGGCTTGGGCCCCAC+AGG | - | chr3.4:55985474-55985493 | MS.gene04304:intron | 65.0% |
| ! | TGGATGGCTTGGGCCCCACA+GGG | - | chr3.4:55985475-55985494 | MS.gene04304:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 55983975 | 55986872 | 55983975 | ID=MS.gene04304 |
| chr3.4 | mRNA | 55983975 | 55986872 | 55983975 | ID=MS.gene04304.t1;Parent=MS.gene04304 |
| chr3.4 | exon | 55986684 | 55986872 | 55986684 | ID=MS.gene04304.t1.exon1;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55986684 | 55986872 | 55986684 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55986439 | 55986504 | 55986439 | ID=MS.gene04304.t1.exon2;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55986439 | 55986504 | 55986439 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55986117 | 55986254 | 55986117 | ID=MS.gene04304.t1.exon3;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55986117 | 55986254 | 55986117 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55985951 | 55986028 | 55985951 | ID=MS.gene04304.t1.exon4;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55985951 | 55986028 | 55985951 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55985810 | 55985860 | 55985810 | ID=MS.gene04304.t1.exon5;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55985810 | 55985860 | 55985810 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55985674 | 55985708 | 55985674 | ID=MS.gene04304.t1.exon6;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55985674 | 55985708 | 55985674 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55984617 | 55984725 | 55984617 | ID=MS.gene04304.t1.exon7;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55984617 | 55984725 | 55984617 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| chr3.4 | exon | 55983975 | 55984169 | 55983975 | ID=MS.gene04304.t1.exon8;Parent=MS.gene04304.t1 |
| chr3.4 | CDS | 55983975 | 55984169 | 55983975 | ID=cds.MS.gene04304.t1;Parent=MS.gene04304.t1 |
| Gene Sequence |
| Protein sequence |
