Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003505.t1 | XP_013456507.1 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 7.50E-130 | 473.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003505.t1 | A0A072UNB3 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 5.4e-130 | 473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003505 | MS.gene032192 | PPI |
| MS.gene003505 | MS.gene98743 | PPI |
| MS.gene003505 | MS.gene051997 | PPI |
| MS.gene85263 | MS.gene003505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003505.t1 | MTR_4g074120 | 97.203 | 286 | 6 | 2 | 1 | 286 | 1 | 284 | 0.0 | 574 |
| MS.gene003505.t1 | MTR_4g074120 | 96.471 | 255 | 7 | 2 | 1 | 255 | 1 | 253 | 0.0 | 509 |
| MS.gene003505.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.18e-125 | 360 |
| MS.gene003505.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.23e-124 | 359 |
| MS.gene003505.t1 | MTR_1g035700 | 61.149 | 296 | 100 | 5 | 1 | 286 | 1 | 291 | 1.16e-122 | 352 |
| MS.gene003505.t1 | MTR_2g099155 | 44.105 | 229 | 110 | 4 | 72 | 283 | 6 | 233 | 4.18e-58 | 186 |
| MS.gene003505.t1 | MTR_2g099155 | 42.678 | 239 | 109 | 5 | 72 | 283 | 6 | 243 | 1.82e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003505.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 7.31e-74 | 227 |
| MS.gene003505.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 9.08e-74 | 226 |
| MS.gene003505.t1 | AT1G60670 | 44.922 | 256 | 109 | 6 | 37 | 286 | 1 | 230 | 1.49e-70 | 218 |
| MS.gene003505.t1 | AT1G10820 | 45.850 | 253 | 120 | 6 | 37 | 286 | 1 | 239 | 6.45e-66 | 207 |
| MS.gene003505.t1 | AT1G10820 | 48.444 | 225 | 98 | 4 | 64 | 286 | 5 | 213 | 7.62e-65 | 203 |
| MS.gene003505.t1 | AT3G07565 | 42.922 | 219 | 118 | 2 | 68 | 283 | 37 | 251 | 7.25e-60 | 191 |
| MS.gene003505.t1 | AT3G07565 | 43.379 | 219 | 116 | 3 | 68 | 283 | 37 | 250 | 3.34e-59 | 189 |
| MS.gene003505.t1 | AT1G60670 | 42.358 | 229 | 105 | 6 | 37 | 259 | 1 | 208 | 5.05e-57 | 182 |
| MS.gene003505.t1 | AT3G07565 | 41.228 | 228 | 118 | 3 | 68 | 283 | 37 | 260 | 7.26e-57 | 184 |
| MS.gene003505.t1 | AT1G68160 | 42.446 | 278 | 137 | 3 | 1 | 278 | 3 | 257 | 8.92e-50 | 166 |
| MS.gene003505.t1 | AT1G60670 | 42.157 | 204 | 91 | 6 | 37 | 234 | 1 | 183 | 2.08e-48 | 160 |
| MS.gene003505.t1 | AT3G07565 | 40.945 | 127 | 67 | 3 | 68 | 191 | 37 | 158 | 3.98e-25 | 99.4 |
| MS.gene003505.t1 | AT2G43470 | 32.984 | 191 | 101 | 8 | 95 | 277 | 24 | 195 | 1.42e-15 | 74.3 |
Find 65 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCAATGGGTAATTATTT+TGG | 0.089118 | 4.3:-32933983 | MS.gene003505:CDS |
| CTTCTTGTTGATTCAGTTCC+AGG | 0.161351 | 4.3:-32933848 | MS.gene003505:CDS |
| TTTGGGTTTAGTAGTTCTTC+TGG | 0.191137 | 4.3:-32933965 | MS.gene003505:CDS |
| TCTTGCAAGATCCTCGTTAA+TGG | 0.242729 | 4.3:+32930299 | None:intergenic |
| CACCTTGTACGTCGATAAAT+TGG | 0.260162 | 4.3:+32931083 | None:intergenic |
| CTGCTCCATGAGTTGCTTCA+TGG | 0.279827 | 4.3:+32931134 | None:intergenic |
| CTTCATGATACTTGGTTCAT+TGG | 0.301764 | 4.3:+32932812 | None:intergenic |
| CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 4.3:+32930322 | None:intergenic |
| TTTCCCAAACTGTGTTCATC+TGG | 0.342616 | 4.3:+32931989 | None:intergenic |
| TTCTCACATGTCACGCGTTA+TGG | 0.353724 | 4.3:-32931413 | MS.gene003505:CDS |
| GAACTTACCTAAGTTCTATT+AGG | 0.367237 | 4.3:+32930267 | None:intergenic |
| GAAACCAGATGAACACAGTT+TGG | 0.374047 | 4.3:-32931993 | MS.gene003505:CDS |
| TGCTCCATGAGTTGCTTCAT+GGG | 0.376053 | 4.3:+32931135 | None:intergenic |
| TCTTCTGGGATGGTATATTC+TGG | 0.384527 | 4.3:-32933950 | MS.gene003505:CDS |
| TTGGGTTTAGTAGTTCTTCT+GGG | 0.387168 | 4.3:-32933964 | MS.gene003505:CDS |
| CTGTTCGCGATGTTGCTTTG+AGG | 0.408201 | 4.3:-32932755 | MS.gene003505:CDS |
| TTCTTGTTGATTCAGTTCCA+GGG | 0.434162 | 4.3:-32933847 | MS.gene003505:CDS |
| TTGATGTACTTCATGATACT+TGG | 0.436387 | 4.3:+32932804 | None:intergenic |
| AGCACAGTCAAATTTGCATT+CGG | 0.444424 | 4.3:-32931461 | MS.gene003505:CDS |
| AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 4.3:+32930306 | None:intergenic |
| ACCCAAAATAATTACCCATT+GGG | 0.452792 | 4.3:+32933981 | None:intergenic |
| GAGAATATGACCCCATGCTT+GGG | 0.454600 | 4.3:+32931431 | None:intergenic |
| AAACCAGATGAACACAGTTT+GGG | 0.464720 | 4.3:-32931992 | MS.gene003505:CDS |
| AACCCAAAATAATTACCCAT+TGG | 0.481651 | 4.3:+32933980 | None:intergenic |
| GTTTAGTAGTTCTTCTGGGA+TGG | 0.481723 | 4.3:-32933960 | MS.gene003505:CDS |
| GCGATGTTGCTTTGAGGTGT+AGG | 0.484163 | 4.3:-32932749 | MS.gene003505:CDS |
| GTGTATGTTCAGGAATTTGT+GGG | 0.484238 | 4.3:-32931158 | MS.gene003505:intron |
| GTTGTAAGTCAAGGTGGTGC+TGG | 0.490288 | 4.3:-32933896 | MS.gene003505:CDS |
| TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 4.3:+32930312 | None:intergenic |
| ATCCACATACTCGTTTAGAA+TGG | 0.498102 | 4.3:+32930446 | None:intergenic |
| GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 4.3:+32930336 | None:intergenic |
| TGAGAATATGACCCCATGCT+TGG | 0.517631 | 4.3:+32931430 | None:intergenic |
| TCTTGATGAACAGTACAGAT+TGG | 0.528915 | 4.3:-32933789 | MS.gene003505:CDS |
| GGTGCTGGTGGTAATTCAGC+TGG | 0.543025 | 4.3:-32933881 | MS.gene003505:CDS |
| CCTGTGTCATGCTTAAGCCC+TGG | 0.552020 | 4.3:+32933830 | None:intergenic |
| ATGTCAGAGATGGTCCCAAT+GGG | 0.554489 | 4.3:-32933995 | MS.gene003505:CDS |
| TGTGTATGTTCAGGAATTTG+TGG | 0.554772 | 4.3:-32931159 | MS.gene003505:intron |
| TGAACAGTACAGATTGGAAG+AGG | 0.560367 | 4.3:-32933783 | MS.gene003505:CDS |
| ACACAGGGTTGGCTGTTGAA+TGG | 0.567227 | 4.3:-32933814 | MS.gene003505:CDS |
| TGGGCCCATGAAGCAACTCA+TGG | 0.567392 | 4.3:-32931139 | MS.gene003505:CDS |
| CATGTCAGAGATGGTCCCAA+TGG | 0.570192 | 4.3:-32933996 | MS.gene003505:CDS |
| CCAGGGCTTAAGCATGACAC+AGG | 0.572689 | 4.3:-32933830 | MS.gene003505:CDS |
| GCTTCTTCAGGATAAGTCGT+TGG | 0.579374 | 4.3:-32931491 | MS.gene003505:intron |
| AACAACCATGTTGTAAGTCA+AGG | 0.581264 | 4.3:-32933905 | MS.gene003505:CDS |
| TGTGCCTTGTGTGGCAAAAG+AGG | 0.582507 | 4.3:+32930478 | None:intergenic |
| GAATAATAGCATGTCAGAGA+TGG | 0.583965 | 4.3:-32934005 | MS.gene003505:CDS |
| TACCAATTTATCGACGTACA+AGG | 0.592537 | 4.3:-32931085 | MS.gene003505:intron |
| CACCACCTTGACTTACAACA+TGG | 0.596965 | 4.3:+32933900 | None:intergenic |
| AGTCAACGGACACTATATGA+TGG | 0.610616 | 4.3:-32931385 | MS.gene003505:intron |
| GCTTAAGCATGACACAGGGT+TGG | 0.613167 | 4.3:-32933825 | MS.gene003505:CDS |
| TGCAGCATGAGTGAGATGCC+TGG | 0.617604 | 4.3:-32930354 | MS.gene003505:intron |
| AATTAATATTGTGCCTTGTG+TGG | 0.630893 | 4.3:+32930469 | None:intergenic |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.642936 | 4.3:-32932746 | MS.gene003505:CDS |
| AGAATATGACCCCATGCTTG+GGG | 0.646474 | 4.3:+32931432 | None:intergenic |
| TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 4.3:+32930315 | None:intergenic |
| TGGAGGCAGAGTCAAACAGA+GGG | 0.653189 | 4.3:-32934093 | MS.gene003505:CDS |
| GTAAGTCAAGGTGGTGCTGG+TGG | 0.656921 | 4.3:-32933893 | MS.gene003505:CDS |
| ATGGAGGCAGAGTCAAACAG+AGG | 0.667685 | 4.3:-32934094 | MS.gene003505:CDS |
| GAATATGACCCCATGCTTGG+GGG | 0.678829 | 4.3:+32931433 | None:intergenic |
| GAACAGTACAGATTGGAAGA+GGG | 0.679393 | 4.3:-32933782 | MS.gene003505:CDS |
| CAGGGCTTAAGCATGACACA+GGG | 0.681848 | 4.3:-32933829 | MS.gene003505:CDS |
| AACCATGTTGTAAGTCAAGG+TGG | 0.691347 | 4.3:-32933902 | MS.gene003505:CDS |
| GCGTTATGGAACAAAGTCAA+CGG | 0.697757 | 4.3:-32931399 | MS.gene003505:CDS |
| ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 4.3:-32930310 | MS.gene003505:CDS |
| CATGCAATATCATTTCAGCA+CGG | 0.730065 | 4.3:-32934034 | MS.gene003505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTTAATTTTTTA+TGG | + | chr4.3:32932564-32932583 | None:intergenic | 0.0% |
| !! | AATATGATCATTAATTTAAA+TGG | + | chr4.3:32933583-32933602 | None:intergenic | 10.0% |
| !! | ATTAAAAAAACTTAAGAAAA+TGG | + | chr4.3:32933019-32933038 | None:intergenic | 10.0% |
| !! | TTATTTATTTATTGCTAATT+TGG | - | chr4.3:32930647-32930666 | MS.gene003505:intron | 10.0% |
| !!! | ATAAATTTCCAATTTTAAAT+GGG | + | chr4.3:32932224-32932243 | None:intergenic | 10.0% |
| !! | ATAACAATCATGAAATTAAA+AGG | + | chr4.3:32931519-32931538 | None:intergenic | 15.0% |
| !! | CTTTAATATGTTATAAGTTA+TGG | - | chr4.3:32931955-32931974 | MS.gene003505:intron | 15.0% |
| !! | TATAATGAAAGATGAAAATT+TGG | + | chr4.3:32933666-32933685 | None:intergenic | 15.0% |
| !! | TTAAAATTGGAAATTTATCA+GGG | - | chr4.3:32932226-32932245 | MS.gene003505:intron | 15.0% |
| !!! | GATAAATTTCCAATTTTAAA+TGG | + | chr4.3:32932225-32932244 | None:intergenic | 15.0% |
| !!! | TAAATTTCCAATTTTAAATG+GGG | + | chr4.3:32932223-32932242 | None:intergenic | 15.0% |
| !!! | TAAGTTGAACAATAAATTTA+AGG | - | chr4.3:32930879-32930898 | MS.gene003505:intron | 15.0% |
| !!! | TTATTTTCTTAGTTTATGTT+TGG | + | chr4.3:32931038-32931057 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGGAAATTTATC+AGG | - | chr4.3:32932225-32932244 | MS.gene003505:intron | 15.0% |
| !! | AGACACACTTAAATTATTAT+CGG | + | chr4.3:32930723-32930742 | None:intergenic | 20.0% |
| !! | ATAAAAACAAATGACTTACT+TGG | + | chr4.3:32930618-32930637 | None:intergenic | 20.0% |
| !! | ATAATTGCAACATATTAAAG+TGG | + | chr4.3:32931848-32931867 | None:intergenic | 20.0% |
| !! | ATGAAACATAACCTTTAAAT+AGG | + | chr4.3:32932141-32932160 | None:intergenic | 20.0% |
| !! | ATTTGTAACAACTAATTTAG+TGG | - | chr4.3:32933403-32933422 | MS.gene003505:intron | 20.0% |
| !! | CTTGTATTCAATAATTTGAT+TGG | - | chr4.3:32931363-32931382 | MS.gene003505:intron | 20.0% |
| !! | TAATGAAGTTTACTTGTATT+TGG | - | chr4.3:32933949-32933968 | MS.gene003505:CDS | 20.0% |
| !! | TATTTAATGAAATGTGGAAT+TGG | + | chr4.3:32933188-32933207 | None:intergenic | 20.0% |
| !! | TTCAACTTACATTTATATGA+AGG | + | chr4.3:32930868-32930887 | None:intergenic | 20.0% |
| !! | TTGAATCAATTAATGTCTTT+AGG | - | chr4.3:32932817-32932836 | MS.gene003505:CDS | 20.0% |
| !! | TTGATTCAATATATCAAAAC+TGG | + | chr4.3:32932806-32932825 | None:intergenic | 20.0% |
| !!! | AAATTTCCAATTTTAAATGG+GGG | + | chr4.3:32932222-32932241 | None:intergenic | 20.0% |
| !!! | AAGAACCTAAATTATTTTCA+TGG | + | chr4.3:32931177-32931196 | None:intergenic | 20.0% |
| !!! | AGAACCTAAATTATTTTCAT+GGG | + | chr4.3:32931176-32931195 | None:intergenic | 20.0% |
| !!! | AGATTCTATAAAATTGATTC+TGG | - | chr4.3:32930802-32930821 | MS.gene003505:intron | 20.0% |
| !!! | AGTTTTGTTTTTGTAAATAC+TGG | - | chr4.3:32933333-32933352 | MS.gene003505:intron | 20.0% |
| !!! | CAGAAAAGTATGTAAAATTT+TGG | - | chr4.3:32932415-32932434 | MS.gene003505:intron | 20.0% |
| !!! | TTTAGAATTCAAATTTGTAC+TGG | + | chr4.3:32931815-32931834 | None:intergenic | 20.0% |
| ! | AACAAAACTGAAACATATGA+TGG | + | chr4.3:32933322-32933341 | None:intergenic | 25.0% |
| ! | AATGAAGAAAATAAAGCTGA+TGG | - | chr4.3:32932051-32932070 | MS.gene003505:intron | 25.0% |
| ! | CAACTTGTAATCCTATTTAA+AGG | - | chr4.3:32932127-32932146 | MS.gene003505:intron | 25.0% |
| ! | CACAAGTATTTAATGAAATG+TGG | + | chr4.3:32933194-32933213 | None:intergenic | 25.0% |
| ! | CTTTCCCATGAAAATAATTT+AGG | - | chr4.3:32931169-32931188 | MS.gene003505:intron | 25.0% |
| ! | GAAAGATATCATATTCACAT+TGG | - | chr4.3:32933525-32933544 | MS.gene003505:intron | 25.0% |
| ! | TATCTAAGTTCTTTCAGTTA+TGG | - | chr4.3:32933769-32933788 | MS.gene003505:intron | 25.0% |
| ! | TATTGTCTGTCTAATTACTA+TGG | - | chr4.3:32933599-32933618 | MS.gene003505:intron | 25.0% |
| ! | TTAAATACTTGTGTATGTTC+AGG | - | chr4.3:32933201-32933220 | MS.gene003505:intron | 25.0% |
| ! | TTGTGGATAATATGTTATAC+TGG | + | chr4.3:32932253-32932272 | None:intergenic | 25.0% |
| ! | TTTCATAGATCTTAAAACTG+AGG | + | chr4.3:32932588-32932607 | None:intergenic | 25.0% |
| !! | AATTTTAAATGGGGGAAAAA+AGG | + | chr4.3:32932214-32932233 | None:intergenic | 25.0% |
| !! | AGGCTAAAATTCAATTTTAG+CGG | - | chr4.3:32930899-32930918 | MS.gene003505:intron | 25.0% |
| !!! | ATGCTTTAGAAACTATAAAG+TGG | + | chr4.3:32931904-32931923 | None:intergenic | 25.0% |
| !!! | TATGAAGTATTGCATTGAAA+TGG | - | chr4.3:32933687-32933706 | MS.gene003505:intron | 25.0% |
| !!! | TGTGCTAAATTTGTTTTTCA+TGG | - | chr4.3:32931434-32931453 | MS.gene003505:CDS | 25.0% |
| !!! | TTTTTTCCCCCATTTAAAAT+TGG | - | chr4.3:32932213-32932232 | MS.gene003505:intron | 25.0% |
| AAAACTGGAATCCCATTTAT+GGG | + | chr4.3:32932791-32932810 | None:intergenic | 30.0% | |
| AACCAACTTAAAACATTAGG+AGG | + | chr4.3:32932522-32932541 | None:intergenic | 30.0% | |
| AACCCAAAATAATTACCCAT+TGG | + | chr4.3:32930392-32930411 | None:intergenic | 30.0% | |
| AACCTAGTTAACTACTGATA+TGG | + | chr4.3:32933717-32933736 | None:intergenic | 30.0% | |
| AATTAATATTGTGCCTTGTG+TGG | + | chr4.3:32933903-32933922 | None:intergenic | 30.0% | |
| AATTTGAACATTTCCGAAAC+AGG | + | chr4.3:32933492-32933511 | None:intergenic | 30.0% | |
| ACCCAAAATAATTACCCATT+GGG | + | chr4.3:32930391-32930410 | None:intergenic | 30.0% | |
| ACCTAGTTAACTACTGATAT+GGG | + | chr4.3:32933716-32933735 | None:intergenic | 30.0% | |
| AGATGTTCCAAGTTTGTAAA+AGG | + | chr4.3:32933378-32933397 | None:intergenic | 30.0% | |
| AGCATTAAACTATGTACATC+GGG | + | chr4.3:32931682-32931701 | None:intergenic | 30.0% | |
| ATAAGTTATGGTGATATCAG+TGG | - | chr4.3:32931967-32931986 | MS.gene003505:intron | 30.0% | |
| CAAAGAAAACAATACTTGGT+AGG | + | chr4.3:32931343-32931362 | None:intergenic | 30.0% | |
| CAAGCAAAGAAAACAATACT+TGG | + | chr4.3:32931347-32931366 | None:intergenic | 30.0% | |
| CAGAACCAACTTAAAACATT+AGG | + | chr4.3:32932525-32932544 | None:intergenic | 30.0% | |
| CAGCATTAAACTATGTACAT+CGG | + | chr4.3:32931683-32931702 | None:intergenic | 30.0% | |
| CTCTGCAAAAATGGTTTAAA+CGG | + | chr4.3:32932347-32932366 | None:intergenic | 30.0% | |
| GCATATTCAAGTGACTTTAA+TGG | + | chr4.3:32931739-32931758 | None:intergenic | 30.0% | |
| TAAAACATTAGGAGGAGAAT+CGG | + | chr4.3:32932514-32932533 | None:intergenic | 30.0% | |
| TGAAAGTTGAATATGCATAG+TGG | - | chr4.3:32931773-32931792 | MS.gene003505:intron | 30.0% | |
| TGCAAATTGAATATGCATAG+TGG | - | chr4.3:32931873-32931892 | MS.gene003505:intron | 30.0% | |
| TGGCTAAGTATAAATACATG+CGG | - | chr4.3:32933423-32933442 | MS.gene003505:intron | 30.0% | |
| TTATGTTGCATCCCATAAAT+GGG | - | chr4.3:32932777-32932796 | MS.gene003505:CDS | 30.0% | |
| TTGATGTACTTCATGATACT+TGG | + | chr4.3:32931568-32931587 | None:intergenic | 30.0% | |
| ! | AATTTTACCTCCTTAGAAAG+TGG | - | chr4.3:32931010-32931029 | MS.gene003505:intron | 30.0% |
| ! | ATTTAGGTTCTTTGAATCTG+TGG | - | chr4.3:32931185-32931204 | MS.gene003505:intron | 30.0% |
| ! | GATTGATTCTTATCCTGTTT+CGG | - | chr4.3:32933476-32933495 | MS.gene003505:intron | 30.0% |
| ! | TCCCAATGGGTAATTATTTT+GGG | - | chr4.3:32930387-32930406 | MS.gene003505:intron | 30.0% |
| ! | TCTAATTTGAAGCTAGTGTT+TGG | + | chr4.3:32930933-32930952 | None:intergenic | 30.0% |
| ! | TTTTCGTCCTTTTACAAACT+TGG | - | chr4.3:32933368-32933387 | MS.gene003505:intron | 30.0% |
| !! | GTGCACAATTTTCATTTTTG+TGG | + | chr4.3:32932270-32932289 | None:intergenic | 30.0% |
| !! | TGGTAGGTAGTATTTTTAAG+TGG | + | chr4.3:32931327-32931346 | None:intergenic | 30.0% |
| !! | TTCACTTCTACACTTGTTTT+CGG | - | chr4.3:32932309-32932328 | MS.gene003505:intron | 30.0% |
| !!! | GGTAGGTAGTATTTTTAAGT+GGG | + | chr4.3:32931326-32931345 | None:intergenic | 30.0% |
| AAACCAGATGAACACAGTTT+GGG | - | chr4.3:32932377-32932396 | MS.gene003505:intron | 35.0% | |
| AACAACCATGTTGTAAGTCA+AGG | - | chr4.3:32930464-32930483 | MS.gene003505:CDS | 35.0% | |
| AAGCTGATGGAACTTTCAAT+TGG | - | chr4.3:32932064-32932083 | MS.gene003505:intron | 35.0% | |
| AATTTGTACTGGACTCAAAG+TGG | + | chr4.3:32931804-32931823 | None:intergenic | 35.0% | |
| ACAGAAAATAAGTTGCCATG+TGG | + | chr4.3:32931146-32931165 | None:intergenic | 35.0% | |
| ACATCGGGAAAATTGTTGAA+AGG | + | chr4.3:32931667-32931686 | None:intergenic | 35.0% | |
| AGCACAGTCAAATTTGCATT+CGG | - | chr4.3:32932908-32932927 | MS.gene003505:intron | 35.0% | |
| AGCTGATGGAACTTTCAATT+GGG | - | chr4.3:32932065-32932084 | MS.gene003505:intron | 35.0% | |
| ATCCACATACTCGTTTAGAA+TGG | + | chr4.3:32933926-32933945 | None:intergenic | 35.0% | |
| ATCCACTAGACAATCTATAG+AGG | + | chr4.3:32933456-32933475 | None:intergenic | 35.0% | |
| ATGGTGATATCAGTGGTTAA+AGG | - | chr4.3:32931974-32931993 | MS.gene003505:CDS | 35.0% | |
| CAAAACTGGAATCCCATTTA+TGG | + | chr4.3:32932792-32932811 | None:intergenic | 35.0% | |
| CATGCAATATCATTTCAGCA+CGG | - | chr4.3:32930335-32930354 | MS.gene003505:CDS | 35.0% | |
| CTTATGTTGCATCCCATAAA+TGG | - | chr4.3:32932776-32932795 | MS.gene003505:CDS | 35.0% | |
| CTTCATGATACTTGGTTCAT+TGG | + | chr4.3:32931560-32931579 | None:intergenic | 35.0% | |
| GAATAATAGCATGTCAGAGA+TGG | - | chr4.3:32930364-32930383 | MS.gene003505:intron | 35.0% | |
| GAATTGATTGCAAAACAAGG+TGG | + | chr4.3:32931304-32931323 | None:intergenic | 35.0% | |
| GTGTATGTTCAGGAATTTGT+GGG | - | chr4.3:32933211-32933230 | MS.gene003505:intron | 35.0% | |
| TACCAATTTATCGACGTACA+AGG | - | chr4.3:32933284-32933303 | MS.gene003505:intron | 35.0% | |
| TAGTCCACAGATAAAAAGAC+AGG | + | chr4.3:32931258-32931277 | None:intergenic | 35.0% | |
| TATGCTTGACTATCTTGTCA+AGG | - | chr4.3:32932712-32932731 | MS.gene003505:intron | 35.0% | |
| TCAAGCTCTCATTATGTTTG+CGG | - | chr4.3:32933046-32933065 | MS.gene003505:intron | 35.0% | |
| TCCCATATCAGTAGTTAACT+AGG | - | chr4.3:32933712-32933731 | MS.gene003505:intron | 35.0% | |
| TCTTGATGAACAGTACAGAT+TGG | - | chr4.3:32930580-32930599 | MS.gene003505:intron | 35.0% | |
| TGGGAATTGATTGCAAAACA+AGG | + | chr4.3:32931307-32931326 | None:intergenic | 35.0% | |
| TGTGTATGTTCAGGAATTTG+TGG | - | chr4.3:32933210-32933229 | MS.gene003505:intron | 35.0% | |
| TGTTTGCGGCTACATTATTT+CGG | - | chr4.3:32933060-32933079 | MS.gene003505:intron | 35.0% | |
| TTAGGTTTCGGTTGTTATCA+CGG | - | chr4.3:32932004-32932023 | MS.gene003505:CDS | 35.0% | |
| TTATCACATTACTGGACTCA+TGG | - | chr4.3:32933548-32933567 | MS.gene003505:intron | 35.0% | |
| TTCCATTCTAAACGAGTATG+TGG | - | chr4.3:32933921-32933940 | MS.gene003505:CDS | 35.0% | |
| TTGGGTTTAGTAGTTCTTCT+GGG | - | chr4.3:32930405-32930424 | MS.gene003505:intron | 35.0% | |
| ! | ATGTTTGGTTCCACTTTCTA+AGG | + | chr4.3:32931023-32931042 | None:intergenic | 35.0% |
| ! | CACATTGGTTATCACATTAC+TGG | - | chr4.3:32933540-32933559 | MS.gene003505:intron | 35.0% |
| ! | CTTTCAATTGGGCTAGAATA+TGG | - | chr4.3:32932076-32932095 | MS.gene003505:intron | 35.0% |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4.3:32931002-32931021 | None:intergenic | 35.0% |
| ! | GTCCCAATGGGTAATTATTT+TGG | - | chr4.3:32930386-32930405 | MS.gene003505:intron | 35.0% |
| ! | TTTGGGTTTAGTAGTTCTTC+TGG | - | chr4.3:32930404-32930423 | MS.gene003505:intron | 35.0% |
| !! | CTCCTCCTAATGTTTTAAGT+TGG | - | chr4.3:32932517-32932536 | MS.gene003505:intron | 35.0% |
| !! | CTTCATTTTTCTGCAATTGC+TGG | + | chr4.3:32932038-32932057 | None:intergenic | 35.0% |
| !! | GAAGCATGACTTTAGAATAC+TGG | + | chr4.3:32932863-32932882 | None:intergenic | 35.0% |
| !! | TTCTAAAGTCATGCTTCTTC+AGG | - | chr4.3:32932866-32932885 | MS.gene003505:intron | 35.0% |
| !! | TTCTTGTTGATTCAGTTCCA+GGG | - | chr4.3:32930522-32930541 | MS.gene003505:intron | 35.0% |
| !!! | AAAGGCAAGGTTTTAGGTTT+CGG | - | chr4.3:32931992-32932011 | MS.gene003505:CDS | 35.0% |
| AAAGGCAAGGAAGGTTATCT+TGG | + | chr4.3:32932196-32932215 | None:intergenic | 40.0% | |
| AACCATGTTGTAAGTCAAGG+TGG | - | chr4.3:32930467-32930486 | MS.gene003505:CDS | 40.0% | |
| AGGGTTTACATTTGTCCACA+TGG | - | chr4.3:32931128-32931147 | MS.gene003505:CDS | 40.0% | |
| AGTCAACGGACACTATATGA+TGG | - | chr4.3:32932984-32933003 | MS.gene003505:intron | 40.0% | |
| CACCTCTATAGATTGTCTAG+TGG | - | chr4.3:32933451-32933470 | MS.gene003505:intron | 40.0% | |
| CACCTTGTACGTCGATAAAT+TGG | + | chr4.3:32933289-32933308 | None:intergenic | 40.0% | |
| CCACAGATAAAAAGACAGGT+TGG | + | chr4.3:32931254-32931273 | None:intergenic | 40.0% | |
| CTTCGCTTTCTCTGCAAAAA+TGG | + | chr4.3:32932356-32932375 | None:intergenic | 40.0% | |
| GAAACCAGATGAACACAGTT+TGG | - | chr4.3:32932376-32932395 | MS.gene003505:intron | 40.0% | |
| GAACAGTACAGATTGGAAGA+GGG | - | chr4.3:32930587-32930606 | MS.gene003505:intron | 40.0% | |
| GATATCAGTGGTTAAAGGCA+AGG | - | chr4.3:32931979-32931998 | MS.gene003505:CDS | 40.0% | |
| GCGTTATGGAACAAAGTCAA+CGG | - | chr4.3:32932970-32932989 | MS.gene003505:intron | 40.0% | |
| GTTCTTTGATGAACAGTTGC+AGG | - | chr4.3:32933858-32933877 | MS.gene003505:CDS | 40.0% | |
| TAAATGGGGGAAAAAAGGCA+AGG | + | chr4.3:32932209-32932228 | None:intergenic | 40.0% | |
| TCTTGCAAGATCCTCGTTAA+TGG | + | chr4.3:32934073-32934092 | None:intergenic | 40.0% | |
| TGAACAGTACAGATTGGAAG+AGG | - | chr4.3:32930586-32930605 | MS.gene003505:intron | 40.0% | |
| TTACAAGTTGTGATCTGCAG+CGG | + | chr4.3:32932117-32932136 | None:intergenic | 40.0% | |
| TTTCCCAAACTGTGTTCATC+TGG | + | chr4.3:32932383-32932402 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCGTGTTTGATGT+TGG | + | chr4.3:32931090-32931109 | None:intergenic | 40.0% |
| ! | ATTGGGCTAGAATATGGTTG+TGG | - | chr4.3:32932082-32932101 | MS.gene003505:intron | 40.0% |
| ! | CATTTTTGCAGAGAAAGCGA+AGG | - | chr4.3:32932354-32932373 | MS.gene003505:intron | 40.0% |
| ! | CCAACCTGTCTTTTTATCTG+TGG | - | chr4.3:32931251-32931270 | MS.gene003505:intron | 40.0% |
| ! | CTGTTTGTTGAAGAGTTGTC+TGG | - | chr4.3:32932472-32932491 | MS.gene003505:intron | 40.0% |
| ! | GTGGTTAAAGGCAAGGTTTT+AGG | - | chr4.3:32931986-32932005 | MS.gene003505:CDS | 40.0% |
| ! | GTTTAGTAGTTCTTCTGGGA+TGG | - | chr4.3:32930409-32930428 | MS.gene003505:intron | 40.0% |
| ! | TTTGGTTCCACTTTCTAAGG+AGG | + | chr4.3:32931020-32931039 | None:intergenic | 40.0% |
| !! | ACATCGCGAACAGTTTTATC+AGG | + | chr4.3:32931607-32931626 | None:intergenic | 40.0% |
| !! | CTTCTTGTTGATTCAGTTCC+AGG | - | chr4.3:32930521-32930540 | MS.gene003505:intron | 40.0% |
| !! | TCTTCTGGGATGGTATATTC+TGG | - | chr4.3:32930419-32930438 | MS.gene003505:intron | 40.0% |
| !!! | AAGTGCGTCGTTTTTGTAAG+TGG | - | chr4.3:32933160-32933179 | MS.gene003505:intron | 40.0% |
| AGAATATGACCCCATGCTTG+GGG | + | chr4.3:32932940-32932959 | None:intergenic | 45.0% | |
| AGATCCTCGTTAATGGCAAC+AGG | + | chr4.3:32934066-32934085 | None:intergenic | 45.0% | |
| ATGTCAGAGATGGTCCCAAT+GGG | - | chr4.3:32930374-32930393 | MS.gene003505:intron | 45.0% | |
| CACCACCTTGACTTACAACA+TGG | + | chr4.3:32930472-32930491 | None:intergenic | 45.0% | |
| GAGAATATGACCCCATGCTT+GGG | + | chr4.3:32932941-32932960 | None:intergenic | 45.0% | |
| GCACCAACACTTCTGATTGA+AGG | + | chr4.3:32931105-32931124 | None:intergenic | 45.0% | |
| GCTTCTTCAGGATAAGTCGT+TGG | - | chr4.3:32932878-32932897 | MS.gene003505:intron | 45.0% | |
| TGAGAATATGACCCCATGCT+TGG | + | chr4.3:32932942-32932961 | None:intergenic | 45.0% | |
| TGATGTTGGCACAACACATG+TGG | + | chr4.3:32931076-32931095 | None:intergenic | 45.0% | |
| TGCTCCATGAGTTGCTTCAT+GGG | + | chr4.3:32933237-32933256 | None:intergenic | 45.0% | |
| TTCTCACATGTCACGCGTTA+TGG | - | chr4.3:32932956-32932975 | MS.gene003505:intron | 45.0% | |
| TTGTCTGTCTGCAAGTCATC+AGG | - | chr4.3:32931218-32931237 | MS.gene003505:intron | 45.0% | |
| ! | ACGCCTTCAATCAGAAGTGT+TGG | - | chr4.3:32931099-32931118 | MS.gene003505:CDS | 45.0% |
| !! | ATCAGAAGTGTTGGTGCTAC+AGG | - | chr4.3:32931108-32931127 | MS.gene003505:CDS | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | - | chr4.3:32931623-32931642 | MS.gene003505:intron | 45.0% |
| !! | TCAGAAGTGTTGGTGCTACA+GGG | - | chr4.3:32931109-32931128 | MS.gene003505:CDS | 45.0% |
| ACTGCCTGTTGCCATTAACG+AGG | - | chr4.3:32934059-32934078 | MS.gene003505:CDS | 50.0% | |
| ATGGAGGCAGAGTCAAACAG+AGG | - | chr4.3:32930275-32930294 | MS.gene003505:CDS | 50.0% | |
| CAGGGCTTAAGCATGACACA+GGG | - | chr4.3:32930540-32930559 | MS.gene003505:intron | 50.0% | |
| CATGTCAGAGATGGTCCCAA+TGG | - | chr4.3:32930373-32930392 | MS.gene003505:intron | 50.0% | |
| CGTTCGTCTCAGCACTTCAT+AGG | + | chr4.3:32930686-32930705 | None:intergenic | 50.0% | |
| CTGCTCCATGAGTTGCTTCA+TGG | + | chr4.3:32933238-32933257 | None:intergenic | 50.0% | |
| GAATATGACCCCATGCTTGG+GGG | + | chr4.3:32932939-32932958 | None:intergenic | 50.0% | |
| GCTTAAGCATGACACAGGGT+TGG | - | chr4.3:32930544-32930563 | MS.gene003505:intron | 50.0% | |
| GTTGTAAGTCAAGGTGGTGC+TGG | - | chr4.3:32930473-32930492 | MS.gene003505:CDS | 50.0% | |
| TCGTTAATGGCAACAGGCAG+TGG | + | chr4.3:32934060-32934079 | None:intergenic | 50.0% | |
| TGGAGGCAGAGTCAAACAGA+GGG | - | chr4.3:32930276-32930295 | MS.gene003505:CDS | 50.0% | |
| TGGATTCATGCACACAGCAC+AGG | + | chr4.3:32931719-32931738 | None:intergenic | 50.0% | |
| TGGGGGAAAAAAGGCAAGGA+AGG | + | chr4.3:32932205-32932224 | None:intergenic | 50.0% | |
| TGTGCCTTGTGTGGCAAAAG+AGG | + | chr4.3:32933894-32933913 | None:intergenic | 50.0% | |
| TTAATGGCAACAGGCAGTGG+CGG | + | chr4.3:32934057-32934076 | None:intergenic | 50.0% | |
| ! | GGCATTTGGCTCATAATGCC+AGG | + | chr4.3:32934036-32934055 | None:intergenic | 50.0% |
| ! | TCGACCTCTTTTGCCACACA+AGG | - | chr4.3:32933887-32933906 | MS.gene003505:CDS | 50.0% |
| !! | ACACAGGGTTGGCTGTTGAA+TGG | - | chr4.3:32930555-32930574 | MS.gene003505:intron | 50.0% |
| !! | CTGTTCGCGATGTTGCTTTG+AGG | - | chr4.3:32931614-32931633 | MS.gene003505:intron | 50.0% |
| !! | GCGATGTTGCTTTGAGGTGT+AGG | - | chr4.3:32931620-32931639 | MS.gene003505:intron | 50.0% |
| CCAGGGCTTAAGCATGACAC+AGG | - | chr4.3:32930539-32930558 | MS.gene003505:intron | 55.0% | |
| CCTGTGTCATGCTTAAGCCC+TGG | + | chr4.3:32930542-32930561 | None:intergenic | 55.0% | |
| TGCAGCATGAGTGAGATGCC+TGG | - | chr4.3:32934015-32934034 | MS.gene003505:CDS | 55.0% | |
| TGGGCCCATGAAGCAACTCA+TGG | - | chr4.3:32933230-32933249 | MS.gene003505:intron | 55.0% | |
| ! | GTAAGTCAAGGTGGTGCTGG+TGG | - | chr4.3:32930476-32930495 | MS.gene003505:CDS | 55.0% |
| !! | GGTGCTGGTGGTAATTCAGC+TGG | - | chr4.3:32930488-32930507 | MS.gene003505:CDS | 55.0% |
| CAACAGGCAGTGGCGGCATT+TGG | + | chr4.3:32934050-32934069 | None:intergenic | 60.0% | |
| TCGGCGCTACCCCCAAGCAT+GGG | - | chr4.3:32932927-32932946 | MS.gene003505:intron | 65.0% | |
| TTCGGCGCTACCCCCAAGCA+TGG | - | chr4.3:32932926-32932945 | MS.gene003505:intron | 65.0% | |
| CGGCGCTACCCCCAAGCATG+GGG | - | chr4.3:32932928-32932947 | MS.gene003505:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32930275 | 32934116 | 32930275 | ID=MS.gene003505 |
| chr4.3 | mRNA | 32930275 | 32934116 | 32930275 | ID=MS.gene003505.t1;Parent=MS.gene003505 |
| chr4.3 | exon | 32933773 | 32934116 | 32933773 | ID=MS.gene003505.t1.exon1;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32933773 | 32934116 | 32933773 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32932740 | 32932839 | 32932740 | ID=MS.gene003505.t1.exon2;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32932740 | 32932839 | 32932740 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32931970 | 32932026 | 32931970 | ID=MS.gene003505.t1.exon3;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32931970 | 32932026 | 32931970 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32931386 | 32931503 | 32931386 | ID=MS.gene003505.t1.exon4;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32931386 | 32931503 | 32931386 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32931086 | 32931168 | 32931086 | ID=MS.gene003505.t1.exon5;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32931086 | 32931168 | 32931086 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32930456 | 32930517 | 32930456 | ID=MS.gene003505.t1.exon6;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32930456 | 32930517 | 32930456 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| chr4.3 | exon | 32930275 | 32930371 | 32930275 | ID=MS.gene003505.t1.exon7;Parent=MS.gene003505.t1 |
| chr4.3 | CDS | 32930275 | 32930371 | 32930275 | ID=cds.MS.gene003505.t1;Parent=MS.gene003505.t1 |
| Gene Sequence |
| Protein sequence |
