AlfalfaGEDB | MS.gene85263

M. sativa cultivar XinJiangDaYe / MS.gene85263

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF12579.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85263.t1	XP_013465461.1	98.3	241	4	0	1	241	1	241	7.90E-125	456.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85263.t1	A0A072VD21	98.3	241	4	0	1	241	1	241	5.7e-125	456.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene85263.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene85263	MS.gene067187	PPI
MS.gene85263	MS.gene52093	PPI
MS.gene85263	MS.gene026313	PPI
MS.gene85263	MS.gene057726	PPI
MS.gene85263	MS.gene003505	PPI
MS.gene90961	MS.gene85263	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85263.t1	MTR_2g099155	98.340	241	4	0	1	241	1	241	3.05e-178	489
MS.gene85263.t1	MTR_2g099155	94.024	251	5	1	1	241	1	251	2.16e-174	479
MS.gene85263.t1	MTR_4g074120	45.918	196	102	2	39	233	89	281	3.67e-57	183
MS.gene85263.t1	MTR_1g035700	45.178	197	100	4	39	232	89	280	1.84e-49	164
MS.gene85263.t1	MTR_1g035700	45.178	197	100	4	39	232	89	280	5.71e-49	164
MS.gene85263.t1	MTR_1g035700	43.350	203	102	4	39	232	89	287	6.08e-48	160
MS.gene85263.t1	MTR_4g074120	43.275	171	93	2	39	208	89	256	6.27e-43	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85263.t1	AT3G07565	64.286	196	68	2	39	233	56	250	2.05e-91	270
MS.gene85263.t1	AT3G07565	63.959	197	68	3	39	233	56	251	1.18e-89	265
MS.gene85263.t1	AT3G07565	61.165	206	68	4	39	233	56	260	9.78e-87	258
MS.gene85263.t1	AT3G07565	62.810	121	43	2	39	158	56	175	1.57e-49	161
MS.gene85263.t1	AT1G60670	36.818	220	122	5	23	232	19	231	4.63e-41	141
MS.gene85263.t1	AT1G60670	36.818	220	122	5	23	232	19	231	5.21e-41	141
MS.gene85263.t1	AT1G10820	37.500	208	120	4	30	235	13	212	5.41e-41	140
MS.gene85263.t1	AT1G10820	37.019	208	121	3	30	235	39	238	6.10e-41	141
MS.gene85263.t1	AT1G60670	36.364	220	118	5	23	232	19	226	4.35e-40	139
MS.gene85263.t1	AT1G60670	36.735	196	107	5	23	208	19	207	3.69e-32	117

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Find 62 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACACCTGGAGAGAGGAA+AGG	0.663481	2.4:-4948124	None:intergenic
ACAAGACCTGAAGAGGTTTC+AGG	0.340002	2.4:-4943012	None:intergenic
ACCTGAAGAGGTTTCAGGAA+CGG	0.587306	2.4:-4943007	None:intergenic
AGAAAACAGCAAGAGAAGGA+AGG	0.565104	2.4:+4946203	MS.gene85263:CDS
AGAAAGAAAACAGCAAGAGA+AGG	0.541934	2.4:+4946199	MS.gene85263:CDS
AGCTAAATAACAAGACAGTC+CGG	0.470131	2.4:+4945265	MS.gene85263:CDS
AGCTCTTCATTCATCTTCAC+TGG	0.451576	2.4:-4949198	None:intergenic
AGGAAAGGTTTGCAGAGATT+TGG	0.261482	2.4:-4948109	None:intergenic
ATAGAGATTAACCTGAATAA+GGG	0.495423	2.4:-4947836	None:intergenic
ATCATTGGTGGCGCATATGG+AGG	0.535761	2.4:-4947789	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGACACTTAAAAAGGAA+CGG	-	chr2.4:4947090-4947109	None:intergenic	30.0%
AAGTTGTAGTAGTTACAAAC+TGG	+	chr2.4:4945027-4945046	MS.gene85263:intron	30.0%
AATATATGCACTCTGAATGA+GGG	-	chr2.4:4946667-4946686	None:intergenic	30.0%
AATCAACTATATTACTGCGT+AGG	+	chr2.4:4943556-4943575	MS.gene85263:intron	30.0%
AGATAACATTCCTAGAGATT+AGG	+	chr2.4:4948518-4948537	MS.gene85263:intron	30.0%
AGGTATGGAAAAAATTCACA+AGG	-	chr2.4:4947863-4947882	None:intergenic	30.0%
ATAACACATCTATGGAAGAA+AGG	-	chr2.4:4946610-4946629	None:intergenic	30.0%
ATAAGTGTACTTCAGAAGTA+AGG	-	chr2.4:4948461-4948480	None:intergenic	30.0%
ATCCTGTCGAAAAAATAAAG+AGG	-	chr2.4:4949138-4949157	None:intergenic	30.0%
ATCTTGTATCAACTAGTATC+AGG	+	chr2.4:4945460-4945479	MS.gene85263:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	4942928	4949266	4942928	ID=MS.gene85263
chr2.4	mRNA	4942928	4949266	4942928	ID=MS.gene85263.t1;Parent=MS.gene85263
chr2.4	exon	4942928	4943115	4942928	ID=MS.gene85263.t1.exon1;Parent=MS.gene85263.t1
chr2.4	CDS	4942928	4943115	4942928	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4945218	4945317	4945218	ID=MS.gene85263.t1.exon2;Parent=MS.gene85263.t1
chr2.4	CDS	4945218	4945317	4945218	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4946198	4946263	4946198	ID=MS.gene85263.t1.exon3;Parent=MS.gene85263.t1
chr2.4	CDS	4946198	4946263	4946198	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4947732	4947846	4947732	ID=MS.gene85263.t1.exon4;Parent=MS.gene85263.t1
chr2.4	CDS	4947732	4947846	4947732	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4948057	4948139	4948057	ID=MS.gene85263.t1.exon5;Parent=MS.gene85263.t1
chr2.4	CDS	4948057	4948139	4948057	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4948872	4948933	4948872	ID=MS.gene85263.t1.exon6;Parent=MS.gene85263.t1
chr2.4	CDS	4948872	4948933	4948872	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1
chr2.4	exon	4949155	4949266	4949155	ID=MS.gene85263.t1.exon7;Parent=MS.gene85263.t1
chr2.4	CDS	4949155	4949266	4949155	ID=cds.MS.gene85263.t1;Parent=MS.gene85263.t1

Gene Sequence

>MS.gene85263

ATGGCGAACCCTTCTGGTACTGGTGGTAATCATCAAGAACAACATACTCAGGTGAATCCTTCTTCTTTTAACGGCAATTCCGTTCCTGAAACCTCTTCAGGTCTTGTCATGAACATGAAGCATAATCCTGGCATATCTCTTGATTGGTCCCCTGAAGAACAATCCATTCTCGAAGATGGACTCGCCAAGTATGTCAATTTTCTATTTTTATGCAATATATAATGGAATTATCATGGTTTATGAGTTTATCTATATGTTTTGAATTTACTTTTTAGTTTGTGAGATGGAATTGTTGATTATATAAAATTTAGGTTTTTGTTAGCTATTTTTGTAGTTTAAGTCATGAATTAGTGTTCTAATTTTGTAGTTTAAGACTTAAGTCATGATTTAGGGTTCACATTAAATAATTTTTTTGTATTGTTAATCCTAGTAACGCGGCCAGTCAACATACTTTGAGACCAAGAGCGAACTTTTTTAGGGAAAATTATTAAAGTTTATAGTTTATTTAAGTGTAATTTTTAAGGTTTTGGTGTAATTTTTGTCGTATATAATCACGGTGGTTGAACTTAACCAATTTATTAAATTGGTTTAATTGATTAAATAATGTATTTAGCAATAAGTATATATAAATCAACTATATTACTGCGTAGGTCATTCGGTCGAGTTTAGTACAGAGGGCTTTTGGGTTGGATATGGGGTCGTGTGTTCGAGACTTGTAAGATGAATGAATATCTATATATTAGAAACTTTTTTTTTTTCGTTAGTAGCAAAGTGAAAATATAAAATTTGAAAAAACATCACACGCAGGATTTGATCCCGTGTTGTAGCTTACTAGGTTTAGATAACCCAACCGCTCGGCCGCACAGAAGTAGATGTCATATTACAGAAATGTTAGTTAATACATAATATATAGAATTATGGGGCCTAAATTTAGGACTAAAAATCATAAAAATTGGAGGTTTAAAGCCATAGCTTTAGTAGCCTTAGGTTAGGACCGGCCTTGCGTAGTAGTCAATAGCCGCCGCCGCGTTGCATAGCATAGCAGTCTCTAAAACTTATTTGCTTTATATTGGATTTGGATATTATTGAACTTCGATTGTTTTTTCGGTCAAGAAGAAATTAAAATAAACAAGTTAACCAGGGGAAGAAGAACCCCTATAATCATCCATCAACACGGAAACTAAAAGAGGAAAAGAAAGTAAAAAACATTCCAATAAAAGGCGATTTGGTGCCCCTAAGGGGATAACATATCAGCAACTTTATTAGCGTCATGAATGATAAGATGAAGAGAAGTTTTCCAATACAGCAAATGCAACAAGGAGGTAATCAACTTTAGGATAGGACTGGGGGGTGTGGTAGATGTACGCCCTTTGTGAATAAGGAAGGGTACGCCACTACGTCTAAGTTCTTGGGCAGTGGCAGAGCTTCAAATGTTTTTATGAGGGCCCCATTTTTTTAAATTTGTATATAATTTTTTCCACTAAAATATAAAGTTTGATATTGGTGTGTTGAAGTTTGTCCATTTAACTTTTGCTTGCAAACCAGGGCTCGAATCTGGCTCTTTGCAATATTATTATAGCATTTTTTTTGTTAAAAAGTACAGGTATATAGCTAAAACACGCAGTGAGGGACTTGAACTCAGGTTACACAACTTGCAGCTGCATGACTTTACCCCTAGACCACATCATTCACTTGTGATATAAATGCTTATTCACCTGTATAATAATTAGCTAAAATATGTATGTATATACCTATTAAAAATGAAGATTTTGCGATTTTGGGAAAAAGGACATGGCCTTCCTATGTCCCTATAGAGATCCACCACTGTCTTTGGGAAATCACTTCAGTCACTATCTTATAGCTTACTTTACATAGAGCCACGGGGCGCAGTTGACTAATCAGAAAGGGTTCATGGCATTTGGGAATTAGAGTAAGTAGAGTTTGGTTTACCTCAGATGTTGGATTAGGAAAGTCAAAGCAATTTTTAACAAGCCTGAATCTAGAATTACGAACAGTAGCTCGTTCGTTTTTGAAGAAGATAGGGCAATAACTGTCAGGTCCAGGAGAGGCAATAATCATCCAATAACACGGAAACTAAAAAGTTGTAGTAGTTACAAACTGGCCTGACTTGTTGAAAGAGCCCGTGTACCAACTCTTATAAATGGATAGAACACGTCTTTTAAGCTTAGTCTTCATAGAGCATGTGTATTTTGATCAGTAATATATATCTGTAAAATTCTATAAGGTAGTAGTCAAATAATTAATAAAAATTTCAAAATTTCTTTTGCAGGTATGCCTCAGAATCTAACATCGTGCGCTATGCAAAGATAGCTCAACAGCTAAATAACAAGACAGTCCGGGATGTGGCACTACGTGTCAGGTGGATGAACGTAAGTTACATGTTTGTTTCTGCCTTATGGCATTTATTTCATTGTAAATGCTATAAAAATCTATGTCCCATGATTTTATAAGGGTGCTGTTGCATTAGGATTTAGAGTTTAGTTTACGAACATTGGTTAGTAAACCGTTTGGATCTTGTATCAACTAGTATCAGGGTCTAACTTATTGCGATCCTTTTTCTAGATGTTTGTCATAACAGTGCTCACAGGTTTAATGTTTGTCAAGGTTGTGACTTGTGAGAACTTTTCTTGTTTGTTGGGACATGATAATCTTATATTAGATATGTCATTGCATGGTAAATATATCCACCTAATATTGGAGTTCTATGTTATAATTTTTTTTGGAAGCTTTCAGTCTCTTGCACCTCACTTTTTGTGGATTTGTCATAACTCTAACCTTCTCTTCAGTTTTTTTTTTCTTTCTTTCTGGCCTAGTGGCCAAAATGTACTCAAATAAACACACACACACACACACACACACACACACACACACAGTGAGAGAGAAAGTGGTGACCATGGTTTGAACCTGAGATTCCCCATAAAATGTCCTCACAACCAAACCACTAGGATGTAACAACCCAGACGGCCATCTTTTCATCTTAAAATGAAAGATTTGTAAAATATTTACTTGATTACGTTAGATATTTGATAGAGATCTTTAAGAGTAACCATCTTGTTTTCTTCTTGAGAAAAAAGGGTAACTGATGCTTTATTCATTCATTAAATGGTGGAAGACACTTCGGTTCTGTTTGCAACCATCCCCATACTTAATTTAAAATATGAAATAAAGAAGCTCACTATTGAAGATTGCATAAACTCAGTTTCTGCATACACTTATTATAATGGCGTGTTTGTTTTTCATTTGTTACAGAAGAAAGAAAACAGCAAGAGAAGGAAGGATGATCACAATTTGTCACGAAAAAGTAAAGATAAAAAGGTACAGCTTCCATATATTAAACATTCTTACGATTATTATATTATAATTTTTGTTCATGTCTTGTTTCCTTATATGGATGGCTTTGGAGATGCTTTTTGTTGTCTTTCTGTAATGTTAGGCTATTGTTTGTCTCTGGTCCTATCTCTTTTGCTGAATGTTGCCTGGTGAATATTATCTTTCATGTTCTCACGCTGTCACCCCTGCTTTAGACACATGAATTTAGTTTGTCTTGAATTCCTTACTTCTATAGTTCTGTAATTAAAGCCTACTTGATTATCTTTTGATTGATGATGTATATCCTTATCCTTGTGTTATTATGTTGATTGAGGGCTGACCTCTGGACCCTTTCTTCCATAGATGTGTTATGACTTCGGAGTTTGGACTTTGGAGTTTGGAGAAGCCCTCATTCAGAGTGCATATATTCCACCTAAAATTTTGACATATTTGACAAAGCATTATTGTGTCACTTATCAGCTTCAATAATTTTAAGGGAAATGTTAACTTGTGCCCTCAAGGCACAAGTTAATGATTCAAAATAGAAATATTCTATTGTAATTAATGCATTTGACTTTAACTTTTTTACTTTCCAATAATTAAATGCACAAAATTTAAGAAAATGTTTCCATTTTTGGGTTGCTTAACATGTGCCCTAAGGGCACAAGTTAACATGACCCTAATTTTAACTAAGCTTTTCTTGGACATGTAAATGTTATCCTATATTTTCTAGATCTTGTAAAAGTGTTTGATAATTAGGTTATTTTGACTATCTTTTCTGACACTGGCCTATAAAAGTTTCATTTTTAAATTTTAAGTAGTACTACCTCCGTTCCTTTTTAAGTGTCACTTTTTAACATTTTACACAAACCAAGACACTTTACTTTTTCTTATACAATAATCTATACTTTTACTATAATAGCCTTAGTCATTTAATATCTTATTTCATATATTTCTCTCTCCACAATAAATAACTAAGGGTAATGTTGGTAAAACAACATTTATTGTTGCATTGAACTTTGAAAGTGACAGTTAAATAGGAACAAAAAATTTCTCCAAGAGTGACACTTAAAAAGGAACGGAGGGAGTAAATGTCACCTGAAATTTTTGTGCAGACTTCAAGTTTTCTGTACATCATTTTCCTCTACATATTATTTCTCAGAGAATTTCATTATGATGGTTACTATTACTTTTCCTTTTGGAATAAACTGAGCGTTGGGAAATTATCTAACTAGGAAGAATCTACTATGGCATTCTGTTTCCTCATTTCTTTTGATTTGTTAAATAAGTAAGCATATGGGCTAAAAGAAGTGCCCGGAAACAAAAGTGAAGTAGCACAATTGAAGAAATATAATAGAATATTTGTGCATGTGTGAAATGCTGGAAACTCTCAAGTTCTTTCTTGTTTTTTTTTTTTTTTGCTTCTCTTCAATGGGACTTCAGATGCTTACCAAAACTCTATTTTTATTTTCAGGAAAGGGTTTCTGATCCTGCAGCAAAATCATCTCATTTTGCTGCTCGACCCAGTGTCCCTCCATATGCGCCACCAATGATTACTATGGACAATGATGATGGCATCCCTTATTCAGGTTAATCTCTATACCTTGTGAATTTTTTCCATACCTTTGGGTGTTGTGGCTTGACAACATGACAATACAGTCTTGTATCTCTAATGGGCACTTCTTTCAGCTTTGAAATGTCTCATCTACTTGCATTTTTATAAATGATTTAACTTCTCTTATTATTTTTTTCGGACAACTCTTTTCATATTAGTTGTTTTTATCATCATCGTTTTGCAGCAATTGGAGGTCCCACTGCTGAGCTATTAGAGCAGAATGCACAGACCATGACCCAAATCTCTGCAAACCTTTCCTCTCTCCAGGTGTGTTGACAATATCTTCGGTCTATTTTTCCTTTTATGTACTGACTATACTGCTTGGGTGAAAATTGAACTTTCCAGTCCGACTGATTATATATGTATTTGTACTAATCCCTTAATCTTGATAGTAATTAATGTATATTTTCTTCAAATGTTTTTGCCAAACACAATTCAATAGCTGAAACAAATTGAACTTTCCAGTCCGACTGATTATATATGTATTTGTACTAATCCCTTAATCTTGATAGTAATTAATGTATATTTTCTTCAAATGTTTTTGCCAAACACAATTCAATAGCTGAAACAGTATTTATGGACACACCTTACTTCTGAAGTACACTTATATAACTTAAAGTACCAATGCAGAGCAGAATGAGAAAAAGATAACATTCCTAGAGATTAGGAAAGTTTACAAAATTCAGGTAATCATATACTAGATATATCAAATATCAAACTAGTTGTCCTGTATGTTTGTATGTACGCTGAAAATGTTCCCTTTGTGTATGTGTTGTTCAGTATATATCTTATCGTAGTTTAGTCAACAACCTGACATTATGTCTCTTAGGAGGTATTGAAACTGCATAGGTGCTTAAAGCAGTGATAATTCGCAATGTCTCTGCTTGATATTCTGAAAGTGGTGCTCTAATTTATCAATATGATTTCCACTGATAGGCCATTCTCTGTGGCTGTAAAACTGACCTATATTTTTTTTTGTTATTTCTATCTTGTTTCCAGTTACAGGAAAACATCAACCTTTTGTGCCAAACTAGGGACAACATCATCAGAATTATGAATGAGTGAGTTTTACTGTTTTTGTTTTTTTTCTTCTATATTTACTCTCTATAATGTAACTGATTGACTTGTTTCTCTTTTTAAATTTCTGTATGTGAATGCTAGCTAGCTAGCTAGCTAGTCCTTTCCTACTTTAACATAAAGTTAGAATTGTAATATACTTGTTGCTTTAATCTCATTTGACACAATTGTAATATTTTTTCTTTCCTCTTTATTTTTTCGACAGGATGAATGATTCACCAGCGGTGATGAAGCAAATGCCGCCTCTTCCAGTGAAGATGAATGAAGAGCTGTCCCGTTCCATACTCCCAGGAACACCTCTCCATCCTCAGTCATGA

Protein sequence

>MS.gene85263.t1

MANPSGTGGNHQEQHTQVNPSSFNGNSVPETSSGLVMNMKHNPGISLDWSPEEQSILEDGLAKYASESNIVRYAKIAQQLNNKTVRDVALRVRWMNKKENSKRRKDDHNLSRKSKDKKERVSDPAAKSSHFAARPSVPPYAPPMITMDNDDGIPYSAIGGPTAELLEQNAQTMTQISANLSSLQLQENINLLCQTRDNIIRIMNEMNDSPAVMKQMPPLPVKMNEELSRSILPGTPLHPQS