Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051997.t1 | XP_013465461.1 | 98.3 | 241 | 4 | 0 | 1 | 241 | 1 | 241 | 7.90E-125 | 456.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051997.t1 | A0A072VD21 | 98.3 | 241 | 4 | 0 | 1 | 241 | 1 | 241 | 5.7e-125 | 456.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene051997.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene051997 | MS.gene067187 | PPI |
MS.gene051997 | MS.gene52093 | PPI |
MS.gene90961 | MS.gene051997 | PPI |
MS.gene051997 | MS.gene057726 | PPI |
MS.gene026313 | MS.gene051997 | PPI |
MS.gene003505 | MS.gene051997 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051997.t1 | MTR_2g099155 | 98.340 | 241 | 4 | 0 | 1 | 241 | 1 | 241 | 3.05e-178 | 489 |
MS.gene051997.t1 | MTR_2g099155 | 94.024 | 251 | 5 | 1 | 1 | 241 | 1 | 251 | 2.16e-174 | 479 |
MS.gene051997.t1 | MTR_4g074120 | 45.918 | 196 | 102 | 2 | 39 | 233 | 89 | 281 | 3.67e-57 | 183 |
MS.gene051997.t1 | MTR_1g035700 | 45.178 | 197 | 100 | 4 | 39 | 232 | 89 | 280 | 1.84e-49 | 164 |
MS.gene051997.t1 | MTR_1g035700 | 45.178 | 197 | 100 | 4 | 39 | 232 | 89 | 280 | 5.71e-49 | 164 |
MS.gene051997.t1 | MTR_1g035700 | 43.350 | 203 | 102 | 4 | 39 | 232 | 89 | 287 | 6.08e-48 | 160 |
MS.gene051997.t1 | MTR_4g074120 | 43.275 | 171 | 93 | 2 | 39 | 208 | 89 | 256 | 6.27e-43 | 146 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051997.t1 | AT3G07565 | 64.286 | 196 | 68 | 2 | 39 | 233 | 56 | 250 | 2.05e-91 | 270 |
MS.gene051997.t1 | AT3G07565 | 63.959 | 197 | 68 | 3 | 39 | 233 | 56 | 251 | 1.18e-89 | 265 |
MS.gene051997.t1 | AT3G07565 | 61.165 | 206 | 68 | 4 | 39 | 233 | 56 | 260 | 9.78e-87 | 258 |
MS.gene051997.t1 | AT3G07565 | 62.810 | 121 | 43 | 2 | 39 | 158 | 56 | 175 | 1.57e-49 | 161 |
MS.gene051997.t1 | AT1G60670 | 36.818 | 220 | 122 | 5 | 23 | 232 | 19 | 231 | 4.63e-41 | 141 |
MS.gene051997.t1 | AT1G60670 | 36.818 | 220 | 122 | 5 | 23 | 232 | 19 | 231 | 5.21e-41 | 141 |
MS.gene051997.t1 | AT1G10820 | 37.500 | 208 | 120 | 4 | 30 | 235 | 13 | 212 | 5.41e-41 | 140 |
MS.gene051997.t1 | AT1G10820 | 37.019 | 208 | 121 | 3 | 30 | 235 | 39 | 238 | 6.10e-41 | 141 |
MS.gene051997.t1 | AT1G60670 | 36.364 | 220 | 118 | 5 | 23 | 232 | 19 | 226 | 4.35e-40 | 139 |
MS.gene051997.t1 | AT1G60670 | 36.735 | 196 | 107 | 5 | 23 | 208 | 19 | 207 | 3.69e-32 | 117 |
MS.gene051997.t1 | AT1G60670 | 36.686 | 169 | 90 | 5 | 23 | 181 | 19 | 180 | 1.96e-25 | 99.4 |
MS.gene051997.t1 | AT1G68160 | 34.197 | 193 | 119 | 3 | 39 | 228 | 70 | 257 | 4.07e-23 | 95.1 |
MS.gene051997.t1 | AT2G43470 | 31.818 | 220 | 124 | 7 | 22 | 236 | 6 | 204 | 3.02e-21 | 88.6 |
Find 62 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGAAAGGTTTGCAGAGATT+TGG | 0.261482 | 2.2:-3718538 | None:intergenic |
TATAGAGATTAACCTGAATA+AGG | 0.265978 | 2.2:-3718266 | None:intergenic |
TCGAGAATGGATTGTTCTTC+AGG | 0.267802 | 2.2:-3709404 | None:intergenic |
GATGATGGCATCCCTTATTC+AGG | 0.308846 | 2.2:+3718254 | MS.gene051997:CDS |
GGAAAGGTTTGCAGAGATTT+GGG | 0.332027 | 2.2:-3718537 | None:intergenic |
TAGGTTATGGCGAACCCTTC+TGG | 0.336467 | 2.2:+3709248 | None:intergenic |
ACAAGACCTGAAGAGGTTTC+AGG | 0.340002 | 2.2:-3709338 | None:intergenic |
GAGAGGTGTTCCTGGGAGTA+TGG | 0.344621 | 2.2:-3719562 | None:intergenic |
TCCGTTCCTGAAACCTCTTC+AGG | 0.347567 | 2.2:+3709332 | MS.gene051997:CDS |
TGCGCCACCAATGATTACTA+TGG | 0.371818 | 2.2:+3718226 | MS.gene051997:CDS |
TGATGATGTTGTCCCTAGTT+TGG | 0.384182 | 2.2:-3719233 | None:intergenic |
GTAATCATTGGTGGCGCATA+TGG | 0.406796 | 2.2:-3718221 | None:intergenic |
CGAGAATGGATTGTTCTTCA+GGG | 0.417587 | 2.2:-3709403 | None:intergenic |
TGAGGATGGAGAGGTGTTCC+TGG | 0.420236 | 2.2:-3719570 | None:intergenic |
ATGGCGAACCCTTCTGGTAC+TGG | 0.425393 | 2.2:+3709254 | MS.gene051997:CDS |
TGCAAACCTTTCCTCTCTCC+AGG | 0.433697 | 2.2:+3718547 | MS.gene051997:CDS |
TGTCCCTAGTTTGGCACAAA+AGG | 0.448804 | 2.2:-3719224 | None:intergenic |
AGCTCTTCATTCATCTTCAC+TGG | 0.451576 | 2.2:-3719531 | None:intergenic |
GAACAATCCATTCTCGAAGA+TGG | 0.453682 | 2.2:+3709410 | MS.gene051997:CDS |
GGCGAGTCCATCTTCGAGAA+TGG | 0.457858 | 2.2:-3709417 | None:intergenic |
AGCTAAATAACAAGACAGTC+CGG | 0.470131 | 2.2:+3716078 | MS.gene051997:CDS |
TCATTCATCTTCACTGGAAG+AGG | 0.470717 | 2.2:-3719525 | None:intergenic |
GGCATTTGCTTCATCACCGC+TGG | 0.470801 | 2.2:-3719501 | None:intergenic |
ATCCTGGCATATCTCTTGAT+TGG | 0.473143 | 2.2:+3709378 | MS.gene051997:CDS |
GGGATGTGGCACTACGTGTC+AGG | 0.479331 | 2.2:+3716099 | MS.gene051997:CDS |
TGGCGCATATGGAGGGACAC+TGG | 0.491577 | 2.2:-3718210 | None:intergenic |
GGCGCATATGGAGGGACACT+GGG | 0.494739 | 2.2:-3718209 | None:intergenic |
ATAGAGATTAACCTGAATAA+GGG | 0.495423 | 2.2:-3718265 | None:intergenic |
AGAAAATAGCAAGAGAAGGA+AGG | 0.497749 | 2.2:+3717099 | MS.gene051997:CDS |
GTTTGCAGAGATTTGGGTCA+TGG | 0.508018 | 2.2:-3718531 | None:intergenic |
TCATTGTCCATAGTAATCAT+TGG | 0.509412 | 2.2:-3718233 | None:intergenic |
TGTTCCTGGGAGTATGGAAC+GGG | 0.524742 | 2.2:-3719556 | None:intergenic |
GAATTGCCGTTAAAAGAAGA+AGG | 0.528190 | 2.2:-3709311 | None:intergenic |
ATCATTGGTGGCGCATATGG+AGG | 0.535761 | 2.2:-3718218 | None:intergenic |
GTTCATGACAAGACCTGAAG+AGG | 0.548014 | 2.2:-3709345 | None:intergenic |
TTCATCTTCACTGGAAGAGG+CGG | 0.554591 | 2.2:-3719522 | None:intergenic |
AGAAAGAAAATAGCAAGAGA+AGG | 0.556600 | 2.2:+3717095 | MS.gene051997:CDS |
ATGAACATGAAGCATAATCC+TGG | 0.559962 | 2.2:+3709362 | MS.gene051997:CDS |
GAGGATGGAGAGGTGTTCCT+GGG | 0.560302 | 2.2:-3719569 | None:intergenic |
TAACAAGACAGTCCGGGATG+TGG | 0.565990 | 2.2:+3716085 | MS.gene051997:CDS |
ATTACTATGGACAATGATGA+TGG | 0.578059 | 2.2:+3718239 | MS.gene051997:CDS |
ACCTGAAGAGGTTTCAGGAA+CGG | 0.587306 | 2.2:-3709333 | None:intergenic |
CTGTCCCGTTCCATACTCCC+AGG | 0.588528 | 2.2:+3719552 | MS.gene051997:CDS |
GAGAATGGATTGTTCTTCAG+GGG | 0.594056 | 2.2:-3709402 | None:intergenic |
TCATCAAGAACAACATACTC+AGG | 0.599029 | 2.2:+3709283 | MS.gene051997:CDS |
TCATTGGTGGCGCATATGGA+GGG | 0.599262 | 2.2:-3718217 | None:intergenic |
GCTAAATAACAAGACAGTCC+GGG | 0.602112 | 2.2:+3716079 | MS.gene051997:CDS |
GTGTTCCTGGGAGTATGGAA+CGG | 0.607968 | 2.2:-3719557 | None:intergenic |
ACGCACGATGTTAGATTCTG+AGG | 0.609319 | 2.2:-3716036 | None:intergenic |
TTGTCCATAGTAATCATTGG+TGG | 0.612471 | 2.2:-3718230 | None:intergenic |
GACCAATCAAGAGATATGCC+AGG | 0.613497 | 2.2:-3709380 | None:intergenic |
CTGCTCTAATAGCTCAGCAG+TGG | 0.615347 | 2.2:-3718498 | None:intergenic |
TGCTCTAATAGCTCAGCAGT+GGG | 0.617093 | 2.2:-3718497 | None:intergenic |
CATCATGACTGAGGATGGAG+AGG | 0.625694 | 2.2:-3719579 | None:intergenic |
TGACACGTAGTGCCACATCC+CGG | 0.630734 | 2.2:-3716097 | None:intergenic |
TGATTACCACCAGTACCAGA+AGG | 0.632355 | 2.2:-3709263 | None:intergenic |
TTGTCAACACACCTGGAGAG+AGG | 0.651066 | 2.2:-3718558 | None:intergenic |
ATGTGGCACTACGTGTCAGG+TGG | 0.654900 | 2.2:+3716102 | MS.gene051997:CDS |
GCGAACCCTTCTGGTACTGG+TGG | 0.657804 | 2.2:+3709257 | MS.gene051997:CDS |
GATTACCACCAGTACCAGAA+GGG | 0.663106 | 2.2:-3709262 | None:intergenic |
AACACACCTGGAGAGAGGAA+AGG | 0.663481 | 2.2:-3718553 | None:intergenic |
CAGGATGAATGATTCACCAG+CGG | 0.722993 | 2.2:+3719485 | MS.gene051997:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 3709254 | 3719599 | 3709254 | ID=MS.gene051997 |
chr2.2 | mRNA | 3709254 | 3719599 | 3709254 | ID=MS.gene051997.t1;Parent=MS.gene051997 |
chr2.2 | exon | 3709254 | 3709441 | 3709254 | ID=MS.gene051997.t1.exon1;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3709254 | 3709441 | 3709254 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3716031 | 3716130 | 3716031 | ID=MS.gene051997.t1.exon2;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3716031 | 3716130 | 3716031 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3717094 | 3717159 | 3717094 | ID=MS.gene051997.t1.exon3;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3717094 | 3717159 | 3717094 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3718161 | 3718275 | 3718161 | ID=MS.gene051997.t1.exon4;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3718161 | 3718275 | 3718161 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3718486 | 3718568 | 3718486 | ID=MS.gene051997.t1.exon5;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3718486 | 3718568 | 3718486 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3719207 | 3719268 | 3719207 | ID=MS.gene051997.t1.exon6;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3719207 | 3719268 | 3719207 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
chr2.2 | exon | 3719488 | 3719599 | 3719488 | ID=MS.gene051997.t1.exon7;Parent=MS.gene051997.t1 |
chr2.2 | CDS | 3719488 | 3719599 | 3719488 | ID=cds.MS.gene051997.t1;Parent=MS.gene051997.t1 |
Gene Sequence |
Protein sequence |