Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004041.t1 | XP_013456128.1 | 100 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 7.00E-45 | 189.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004041.t1 | Q9XGX7 | 80.6 | 93 | 18 | 0 | 1 | 93 | 1 | 93 | 5.4e-38 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004041.t1 | I3SBU8 | 100.0 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 5.0e-45 | 189.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004041 | MS.gene052067 | PPI |
| MS.gene004041 | MS.gene31107 | PPI |
| MS.gene004041 | MS.gene001663 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004041.t1 | MTR_4g063925 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 2.50e-66 | 194 |
| MS.gene004041.t1 | MTR_4g021715 | 46.237 | 93 | 33 | 1 | 1 | 93 | 1 | 76 | 9.56e-25 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004041.t1 | AT3G46560 | 78.495 | 93 | 20 | 0 | 1 | 93 | 1 | 93 | 4.39e-51 | 155 |
Find 20 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCATGATTGCTGATA+TGG | 0.238381 | 4.3:-39781393 | MS.gene004041:CDS |
| AACCTCACCTGTCACGGATT+TGG | 0.342119 | 4.3:+39781318 | None:intergenic |
| CCAGGTTATTATACATTCTC+AGG | 0.398941 | 4.3:+39777969 | None:intergenic |
| AATCTTGAGTTGCAGCTCCT+TGG | 0.400935 | 4.3:+39777807 | None:intergenic |
| ATTCTTTGTTTATCAGCCTC+TGG | 0.451877 | 4.3:+39781362 | None:intergenic |
| AGAGGCTGATAAACAAAGAA+TGG | 0.503860 | 4.3:-39781360 | MS.gene004041:CDS |
| ATCAGCTCCAAATCCGTGAC+AGG | 0.514968 | 4.3:-39781325 | MS.gene004041:intron |
| CTCTGCACATCTTCGAACAC+AGG | 0.526331 | 4.3:+39777880 | None:intergenic |
| TTTGGGAACCTCACCTGTCA+CGG | 0.540460 | 4.3:+39781312 | None:intergenic |
| CTGAAGCACTCTATGCGTGT+TGG | 0.545186 | 4.3:-39777851 | MS.gene004041:CDS |
| GATTTGGAGCTGATCGATCA+TGG | 0.557131 | 4.3:+39781334 | None:intergenic |
| CCTGAGAATGTATAATAACC+TGG | 0.571370 | 4.3:-39777969 | MS.gene004041:CDS |
| CATGAAAGCATCTCTCCACC+AGG | 0.576768 | 4.3:+39777951 | None:intergenic |
| ACTCTATGCGTGTTGGCATG+AGG | 0.597417 | 4.3:-39777844 | MS.gene004041:CDS |
| TAAATCCCTGCAAAAGCAAG+AGG | 0.610554 | 4.3:-39777906 | MS.gene004041:CDS |
| GGAGCTGCAACTCAAGATTG+AGG | 0.617510 | 4.3:-39777803 | None:intergenic |
| AGGTTTGCTGAGCTCAACCA+AGG | 0.659807 | 4.3:-39777824 | MS.gene004041:CDS |
| GAGATGCTTTCATGATTGTG+TGG | 0.661772 | 4.3:-39777942 | MS.gene004041:CDS |
| TGATATGGAAAATCTTCCAG+AGG | 0.691125 | 4.3:-39781378 | MS.gene004041:CDS |
| GAGAATGTATAATAACCTGG+TGG | 0.692374 | 4.3:-39777966 | MS.gene004041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTAAGATTTAAAC+TGG | - | chr4.3:39779101-39779120 | MS.gene004041:intron | 10.0% |
| !! | TAATTTATTAGAACTTATAA+CGG | + | chr4.3:39781028-39781047 | None:intergenic | 10.0% |
| !!! | AGATTAATTTTTCAAATTTT+TGG | - | chr4.3:39779134-39779153 | MS.gene004041:intron | 10.0% |
| !!! | GATTAATTTTTCAAATTTTT+GGG | - | chr4.3:39779135-39779154 | MS.gene004041:intron | 10.0% |
| !!! | TCATATATATTTTAAGATAT+AGG | - | chr4.3:39778817-39778836 | MS.gene004041:intron | 10.0% |
| !!! | TCATGTTATTTTTATTTTTT+TGG | - | chr4.3:39778788-39778807 | MS.gene004041:intron | 10.0% |
| !! | AAAAAAACCTAAACTTTAAA+AGG | + | chr4.3:39778008-39778027 | None:intergenic | 15.0% |
| !! | AATAATTTGAGCTTATTTAT+TGG | + | chr4.3:39780852-39780871 | None:intergenic | 15.0% |
| !! | ACATTAAATAGATCATTAAA+CGG | + | chr4.3:39779611-39779630 | None:intergenic | 15.0% |
| !! | ATATAATGTTCTATTTAATG+TGG | - | chr4.3:39778440-39778459 | MS.gene004041:intron | 15.0% |
| !! | CTTAATTTATTAGACTTTAT+TGG | + | chr4.3:39779093-39779112 | None:intergenic | 15.0% |
| !!! | ATAATGTGTTGAATTTATTT+TGG | - | chr4.3:39778058-39778077 | MS.gene004041:intron | 15.0% |
| !!! | TGAATCTTTTTTAAAATTTG+AGG | - | chr4.3:39780078-39780097 | MS.gene004041:intron | 15.0% |
| !!! | TTGAATTTATTTTGGAATTT+GGG | - | chr4.3:39778066-39778085 | MS.gene004041:intron | 15.0% |
| !!! | TTTTTTTTTCTTTCTTTTGT+TGG | - | chr4.3:39780035-39780054 | MS.gene004041:intron | 15.0% |
| !! | GTTTAATGATCTATTTAATG+TGG | - | chr4.3:39779610-39779629 | MS.gene004041:intron | 20.0% |
| !! | TCAATATAGTACTTTACTTA+GGG | + | chr4.3:39780888-39780907 | None:intergenic | 20.0% |
| !! | TTGGTTTCATAAAATATTAG+TGG | - | chr4.3:39778977-39778996 | MS.gene004041:intron | 20.0% |
| !!! | ATTTCTACCTTTTAAAGTTT+AGG | - | chr4.3:39777998-39778017 | MS.gene004041:intron | 20.0% |
| !!! | CATCGTAATTTGTAAATAAT+TGG | - | chr4.3:39778093-39778112 | MS.gene004041:intron | 20.0% |
| !!! | CATTTTTGTTTTTGGATAAT+AGG | - | chr4.3:39779433-39779452 | MS.gene004041:intron | 20.0% |
| !!! | GCTTTATTATTTACTCATTT+TGG | - | chr4.3:39779900-39779919 | MS.gene004041:intron | 20.0% |
| !!! | GTTGAATTTATTTTGGAATT+TGG | - | chr4.3:39778065-39778084 | MS.gene004041:intron | 20.0% |
| !!! | TGAATCTGTTTTTATATTGA+GGG | - | chr4.3:39779199-39779218 | MS.gene004041:intron | 20.0% |
| !!! | TGAATTTATTTTGGAATTTG+GGG | - | chr4.3:39778067-39778086 | MS.gene004041:intron | 20.0% |
| !!! | TTGAATCTGTTTTTATATTG+AGG | - | chr4.3:39779198-39779217 | MS.gene004041:intron | 20.0% |
| ! | AAAATATTAGTGGTGTGTTT+GGG | - | chr4.3:39778987-39779006 | MS.gene004041:intron | 25.0% |
| ! | AAATAAATGTACAAACTTCG+AGG | + | chr4.3:39779985-39780004 | None:intergenic | 25.0% |
| ! | ACTTCAATTGTTATGACTTA+CGG | - | chr4.3:39778648-39778667 | MS.gene004041:intron | 25.0% |
| ! | ATAGACAACAAAAATCAATG+TGG | + | chr4.3:39778422-39778441 | None:intergenic | 25.0% |
| ! | CAAATTATCAACATGTCATA+AGG | - | chr4.3:39780784-39780803 | MS.gene004041:intron | 25.0% |
| ! | CTCAATATAGTACTTTACTT+AGG | + | chr4.3:39780889-39780908 | None:intergenic | 25.0% |
| ! | GTAAATAATAAAGCTCAATG+TGG | + | chr4.3:39779894-39779913 | None:intergenic | 25.0% |
| ! | TAAAATATTAGTGGTGTGTT+TGG | - | chr4.3:39778986-39779005 | MS.gene004041:intron | 25.0% |
| ! | TATACCTTAATACAGTCTAT+AGG | - | chr4.3:39779740-39779759 | MS.gene004041:intron | 25.0% |
| ! | TCATGCTAATTTATAAGTTG+CGG | - | chr4.3:39779224-39779243 | MS.gene004041:intron | 25.0% |
| ! | TTATTGCTTCATTACATTGT+GGG | - | chr4.3:39781112-39781131 | MS.gene004041:intron | 25.0% |
| ! | TTGGTTTATATTAGCATTAC+AGG | - | chr4.3:39780054-39780073 | MS.gene004041:intron | 25.0% |
| !! | AAAAAACGAAGCAATGATTT+TGG | + | chr4.3:39777912-39777931 | None:intergenic | 25.0% |
| !! | AAAAACGAAGCAATGATTTT+GGG | + | chr4.3:39777911-39777930 | None:intergenic | 25.0% |
| !! | AATTTAATGAACTAGTCTCT+GGG | + | chr4.3:39779546-39779565 | None:intergenic | 25.0% |
| !! | AGAGACTAGTTCATTAAATT+GGG | - | chr4.3:39779546-39779565 | MS.gene004041:intron | 25.0% |
| !! | CAAAATTTACCACCATTTTA+AGG | + | chr4.3:39780146-39780165 | None:intergenic | 25.0% |
| !!! | ATTTTACATATGGCTTTGTT+AGG | - | chr4.3:39781081-39781100 | MS.gene004041:intron | 25.0% |
| !!! | CTTCTAATGAACTAGTTTTT+GGG | + | chr4.3:39778906-39778925 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTTGAGGCTTCA+TGG | - | chr4.3:39780086-39780105 | MS.gene004041:intron | 25.0% |
| !!! | TTTTAAGGAGAACATCAATA+TGG | + | chr4.3:39780189-39780208 | None:intergenic | 25.0% |
| !!! | TTTTACATATGGCTTTGTTA+GGG | - | chr4.3:39781082-39781101 | MS.gene004041:intron | 25.0% |
| !!! | TTTTTTTCTTTTTTCCCTGT+TGG | - | chr4.3:39778024-39778043 | MS.gene004041:intron | 25.0% |
| AAAACTCAATGTGGTACTTA+AGG | + | chr4.3:39778942-39778961 | None:intergenic | 30.0% | |
| AAAGTGGTAATTAAACCATG+AGG | + | chr4.3:39779576-39779595 | None:intergenic | 30.0% | |
| ACGGATAAGAAAAATCAAAG+TGG | + | chr4.3:39779592-39779611 | None:intergenic | 30.0% | |
| AGAAACATTCAAAAGTCACA+CGG | + | chr4.3:39780213-39780232 | None:intergenic | 30.0% | |
| AGTTATGACTTAAGCCAATA+TGG | - | chr4.3:39779813-39779832 | MS.gene004041:intron | 30.0% | |
| ATATGAGCCAATGTCTATAA+CGG | - | chr4.3:39778485-39778504 | MS.gene004041:intron | 30.0% | |
| CATGCTAATTTATAAGTTGC+GGG | - | chr4.3:39779225-39779244 | MS.gene004041:intron | 30.0% | |
| CATTAGATGAAGGCTTAATT+AGG | - | chr4.3:39780325-39780344 | MS.gene004041:intron | 30.0% | |
| CCAAAAACTAGTTCATTAGA+AGG | - | chr4.3:39778904-39778923 | MS.gene004041:intron | 30.0% | |
| CTTTCTTATCTACTCAATGT+GGG | - | chr4.3:39780909-39780928 | MS.gene004041:intron | 30.0% | |
| GTTATTGCTTCATTACATTG+TGG | - | chr4.3:39781111-39781130 | MS.gene004041:intron | 30.0% | |
| TATGCTAATACAAACCAACA+GGG | + | chr4.3:39778041-39778060 | None:intergenic | 30.0% | |
| TATTAAGGTATACAGCCAAA+TGG | + | chr4.3:39779732-39779751 | None:intergenic | 30.0% | |
| TATTGCTTCATTACATTGTG+GGG | - | chr4.3:39781113-39781132 | MS.gene004041:intron | 30.0% | |
| TCTACCTATAGACTGTATTA+AGG | + | chr4.3:39779747-39779766 | None:intergenic | 30.0% | |
| TGAAGTTGTTTATCCAAACA+AGG | + | chr4.3:39780625-39780644 | None:intergenic | 30.0% | |
| TGTGAGTTAGGATACAAAAA+GGG | + | chr4.3:39778622-39778641 | None:intergenic | 30.0% | |
| TTATGCTAATACAAACCAAC+AGG | + | chr4.3:39778042-39778061 | None:intergenic | 30.0% | |
| TTATTTCCATAAGTTGTCCA+GGG | + | chr4.3:39780747-39780766 | None:intergenic | 30.0% | |
| TTCATTCATCTATCACCATT+TGG | - | chr4.3:39779714-39779733 | MS.gene004041:intron | 30.0% | |
| TTGTGAGTTAGGATACAAAA+AGG | + | chr4.3:39778623-39778642 | None:intergenic | 30.0% | |
| TTGTGCTTTCATTAAGAGTT+AGG | + | chr4.3:39780523-39780542 | None:intergenic | 30.0% | |
| ! | ATAGTGTTTTCATTGAGAGT+TGG | + | chr4.3:39779782-39779801 | None:intergenic | 30.0% |
| ! | ATTCATCGATCAGTATTTTG+TGG | - | chr4.3:39778545-39778564 | MS.gene004041:intron | 30.0% |
| ! | CAATTTAATGAACTAGTCTC+TGG | + | chr4.3:39779547-39779566 | None:intergenic | 30.0% |
| ! | CAGAGACTAGTTCATTAAAT+TGG | - | chr4.3:39779545-39779564 | MS.gene004041:intron | 30.0% |
| ! | TATGTTTAGATGGAAGGTTT+TGG | - | chr4.3:39778671-39778690 | MS.gene004041:intron | 30.0% |
| ! | TGACTTTTGAATGTTTCTTC+TGG | - | chr4.3:39780215-39780234 | MS.gene004041:intron | 30.0% |
| ! | TTTTGATGTCCTCCTTAAAA+TGG | - | chr4.3:39780131-39780150 | MS.gene004041:intron | 30.0% |
| !! | AATTTACCACCATTTTAAGG+AGG | + | chr4.3:39780143-39780162 | None:intergenic | 30.0% |
| !! | GTCTCTGTCTAAGATTTTTA+TGG | - | chr4.3:39779493-39779512 | MS.gene004041:intron | 30.0% |
| !! | TCTGTCTAAGATTTTTATGG+TGG | - | chr4.3:39779496-39779515 | MS.gene004041:intron | 30.0% |
| !!! | CCTTCTAATGAACTAGTTTT+TGG | + | chr4.3:39778907-39778926 | None:intergenic | 30.0% |
| !!! | GTAGCTGTCATTTTTGTTTT+TGG | - | chr4.3:39779425-39779444 | MS.gene004041:intron | 30.0% |
| !!! | GTTAGTTTTTGTTCTTCTGT+TGG | - | chr4.3:39779157-39779176 | MS.gene004041:intron | 30.0% |
| !!! | TGTCATGTTTTTTGGAGAAT+AGG | - | chr4.3:39778268-39778287 | MS.gene004041:intron | 30.0% |
| AAATAAATGTACCCCCTTTG+AGG | + | chr4.3:39777977-39777996 | None:intergenic | 35.0% | |
| AAATCTTAGACAGAGACCAA+AGG | + | chr4.3:39779490-39779509 | None:intergenic | 35.0% | |
| AATAAATGTACCCCCTTTGA+GGG | + | chr4.3:39777976-39777995 | None:intergenic | 35.0% | |
| AATGTGGTACTTAAGGCATA+AGG | + | chr4.3:39778935-39778954 | None:intergenic | 35.0% | |
| ACCTAATGAACAAGTCTCTA+GGG | + | chr4.3:39779848-39779867 | None:intergenic | 35.0% | |
| AGAGGCTGATAAACAAAGAA+TGG | - | chr4.3:39777843-39777862 | MS.gene004041:CDS | 35.0% | |
| AGATGAATGAAGCCATGAAA+GGG | + | chr4.3:39779705-39779724 | None:intergenic | 35.0% | |
| AGTAACCCCTAAAATTTGCA+CGG | + | chr4.3:39780016-39780035 | None:intergenic | 35.0% | |
| CATCAAACTAACTAGTCCAT+GGG | + | chr4.3:39778384-39778403 | None:intergenic | 35.0% | |
| CCAGGTTATTATACATTCTC+AGG | + | chr4.3:39781237-39781256 | None:intergenic | 35.0% | |
| CCTGAGAATGTATAATAACC+TGG | - | chr4.3:39781234-39781253 | MS.gene004041:intron | 35.0% | |
| CTACAGAAAGGAATAGAATG+AGG | + | chr4.3:39780500-39780519 | None:intergenic | 35.0% | |
| CTCACTAGTTCATTAGATGA+AGG | - | chr4.3:39780315-39780334 | MS.gene004041:intron | 35.0% | |
| CTCATGATAGATTAGTGGTA+TGG | - | chr4.3:39780933-39780952 | MS.gene004041:intron | 35.0% | |
| CTTATTTCCATAAGTTGTCC+AGG | + | chr4.3:39780748-39780767 | None:intergenic | 35.0% | |
| CTTCATGGTATGTAAGTTGT+TGG | - | chr4.3:39780101-39780120 | MS.gene004041:intron | 35.0% | |
| GAAACATTCAAAAGTCACAC+GGG | + | chr4.3:39780212-39780231 | None:intergenic | 35.0% | |
| GAGAATGTATAATAACCTGG+TGG | - | chr4.3:39781237-39781256 | MS.gene004041:intron | 35.0% | |
| GCTTTCTTATCTACTCAATG+TGG | - | chr4.3:39780908-39780927 | MS.gene004041:intron | 35.0% | |
| GTAGACAAGAAAACTCAATG+TGG | + | chr4.3:39778951-39778970 | None:intergenic | 35.0% | |
| TACTTTACTTAGGGTCTGTT+GGG | + | chr4.3:39780879-39780898 | None:intergenic | 35.0% | |
| TAGATGAATGAAGCCATGAA+AGG | + | chr4.3:39779706-39779725 | None:intergenic | 35.0% | |
| TCGGCTCTTAAAGTCTTAAA+GGG | + | chr4.3:39780390-39780409 | None:intergenic | 35.0% | |
| TGAAGTTATCGTTGTGAGTT+AGG | + | chr4.3:39778634-39778653 | None:intergenic | 35.0% | |
| TGACTTACGGTATGTTTAGA+TGG | - | chr4.3:39778661-39778680 | MS.gene004041:intron | 35.0% | |
| TGATATGGAAAATCTTCCAG+AGG | - | chr4.3:39777825-39777844 | MS.gene004041:CDS | 35.0% | |
| TGTTGACATATTACCAGACA+GGG | - | chr4.3:39781180-39781199 | MS.gene004041:intron | 35.0% | |
| TTAAGAGTTAGGCTACAGAA+AGG | + | chr4.3:39780512-39780531 | None:intergenic | 35.0% | |
| TTACGGTATGTTTAGATGGA+AGG | - | chr4.3:39778665-39778684 | MS.gene004041:intron | 35.0% | |
| TTGTATTAGACTCTCCTTGT+GGG | + | chr4.3:39780562-39780581 | None:intergenic | 35.0% | |
| TTGTTGACATATTACCAGAC+AGG | - | chr4.3:39781179-39781198 | MS.gene004041:intron | 35.0% | |
| TTTAAGAGCCGACATTACTA+CGG | - | chr4.3:39780398-39780417 | MS.gene004041:intron | 35.0% | |
| TTTGTATTAGACTCTCCTTG+TGG | + | chr4.3:39780563-39780582 | None:intergenic | 35.0% | |
| ! | AATGTTTCTTCTGGACGTTT+TGG | - | chr4.3:39780224-39780243 | MS.gene004041:intron | 35.0% |
| ! | ATGCTGTCTTTTAGTACCTT+TGG | - | chr4.3:39778306-39778325 | MS.gene004041:intron | 35.0% |
| ! | ATGTTTCTTCTGGACGTTTT+GGG | - | chr4.3:39780225-39780244 | MS.gene004041:intron | 35.0% |
| ! | ATTCTTTGTTTATCAGCCTC+TGG | + | chr4.3:39777844-39777863 | None:intergenic | 35.0% |
| ! | CAAAAGCATGATTGCTGATA+TGG | - | chr4.3:39777810-39777829 | MS.gene004041:CDS | 35.0% |
| ! | GGAACTACATTTTCAACAAG+TGG | - | chr4.3:39780246-39780265 | MS.gene004041:intron | 35.0% |
| ! | GTGACTTTCAATGTTGCTTA+TGG | - | chr4.3:39779319-39779338 | MS.gene004041:intron | 35.0% |
| ! | GTTTGGGTTTCAGTTCAAAA+AGG | - | chr4.3:39779003-39779022 | MS.gene004041:intron | 35.0% |
| ! | TGCTGTCTTTTAGTACCTTT+GGG | - | chr4.3:39778307-39778326 | MS.gene004041:intron | 35.0% |
| ! | TTATCCTTAGTTCTCCCAAA+CGG | - | chr4.3:39780809-39780828 | MS.gene004041:intron | 35.0% |
| ! | TTTCCACCGTGCAAATTTTA+GGG | - | chr4.3:39780007-39780026 | MS.gene004041:intron | 35.0% |
| ! | TTTTCCACCGTGCAAATTTT+AGG | - | chr4.3:39780006-39780025 | MS.gene004041:intron | 35.0% |
| ! | TTTTCTTGTCTACTCGATGT+TGG | - | chr4.3:39778958-39778977 | MS.gene004041:intron | 35.0% |
| !! | AATGTTGCTTATGGACGTTT+TGG | - | chr4.3:39779328-39779347 | MS.gene004041:intron | 35.0% |
| !! | ATAGACATTGGCTCATATAG+AGG | + | chr4.3:39778483-39778502 | None:intergenic | 35.0% |
| !! | ATGTTGCTTATGGACGTTTT+GGG | - | chr4.3:39779329-39779348 | MS.gene004041:intron | 35.0% |
| !! | CATGGACTAGTTAGTTTGAT+GGG | - | chr4.3:39778383-39778402 | MS.gene004041:intron | 35.0% |
| !! | TTTTAAGGAGAACATCACTC+TGG | + | chr4.3:39778162-39778181 | None:intergenic | 35.0% |
| !! | TTTTAAGGAGAACGTAACCA+TGG | + | chr4.3:39779294-39779313 | None:intergenic | 35.0% |
| !!! | CTGGCGGTTTATTTTACATA+TGG | - | chr4.3:39781071-39781090 | MS.gene004041:intron | 35.0% |
| !!! | CTTAGTTGTGTGCTGTTTTT+CGG | - | chr4.3:39779462-39779481 | MS.gene004041:intron | 35.0% |
| !!! | CTTGTAGCTGTCATGTTTTT+TGG | - | chr4.3:39778260-39778279 | MS.gene004041:intron | 35.0% |
| !!! | TGAAAGTCACACTGGTTTTA+AGG | + | chr4.3:39779309-39779328 | None:intergenic | 35.0% |
| !!! | TTGTGGGGCTCTTTTATTTT+TGG | - | chr4.3:39781128-39781147 | MS.gene004041:intron | 35.0% |
| !!! | TTTAGATGGAAGGTTTTGGA+GGG | - | chr4.3:39778675-39778694 | MS.gene004041:intron | 35.0% |
| AAACAAGGTCTTAAGCCATG+AGG | + | chr4.3:39780610-39780629 | None:intergenic | 40.0% | |
| AAACACTTGTGAGACCGTTT+GGG | + | chr4.3:39780826-39780845 | None:intergenic | 40.0% | |
| AAACTTCGAGGCGTAAATCT+GGG | + | chr4.3:39779973-39779992 | None:intergenic | 40.0% | |
| AAAGGGGAAAGGGATAAAAG+TGG | + | chr4.3:39779688-39779707 | None:intergenic | 40.0% | |
| AAATGAGTGAACCTGCCAAA+GGG | + | chr4.3:39780451-39780470 | None:intergenic | 40.0% | |
| AAGGGATAAAAGTGGGTGAA+AGG | + | chr4.3:39779680-39779699 | None:intergenic | 40.0% | |
| AAGGGGAAAGGGATAAAAGT+GGG | + | chr4.3:39779687-39779706 | None:intergenic | 40.0% | |
| AATGTGGTACTTAAGTCGTG+AGG | + | chr4.3:39779878-39779897 | None:intergenic | 40.0% | |
| ACAAAAAGGGCTGCCTATAT+AGG | + | chr4.3:39778609-39778628 | None:intergenic | 40.0% | |
| AGCAACATTGAAAGTCACAC+TGG | + | chr4.3:39779317-39779336 | None:intergenic | 40.0% | |
| ATAAATGTACCCCCTTTGAG+GGG | + | chr4.3:39777975-39777994 | None:intergenic | 40.0% | |
| ATTAAATTGGGAGAGCCTCA+TGG | - | chr4.3:39779558-39779577 | MS.gene004041:intron | 40.0% | |
| CAAAATCAGATAACCCTGTC+TGG | + | chr4.3:39781196-39781215 | None:intergenic | 40.0% | |
| CACCTAATGAACAAGTCTCT+AGG | + | chr4.3:39779849-39779868 | None:intergenic | 40.0% | |
| CATCAAGTCTAAGAACCTCA+TGG | - | chr4.3:39780592-39780611 | MS.gene004041:intron | 40.0% | |
| CCAGAATGAAGAGTTACAGA+GGG | + | chr4.3:39781055-39781074 | None:intergenic | 40.0% | |
| CCATCAAACTAACTAGTCCA+TGG | + | chr4.3:39778385-39778404 | None:intergenic | 40.0% | |
| GAGATGCTTTCATGATTGTG+TGG | - | chr4.3:39781261-39781280 | MS.gene004041:intron | 40.0% | |
| GATGAATGAAGCCATGAAAG+GGG | + | chr4.3:39779704-39779723 | None:intergenic | 40.0% | |
| GTACTTTACTTAGGGTCTGT+TGG | + | chr4.3:39780880-39780899 | None:intergenic | 40.0% | |
| TAAATCCCTGCAAAAGCAAG+AGG | - | chr4.3:39781297-39781316 | MS.gene004041:intron | 40.0% | |
| TACCTTTGGGCTCTGTTTAA+TGG | - | chr4.3:39778320-39778339 | MS.gene004041:intron | 40.0% | |
| TAGGGTTAGACTCTCCATAT+TGG | + | chr4.3:39779830-39779849 | None:intergenic | 40.0% | |
| TCATGGCTTAAGACCTTGTT+TGG | - | chr4.3:39780609-39780628 | MS.gene004041:intron | 40.0% | |
| TCTGTAACTCTTCATTCTGG+CGG | - | chr4.3:39781055-39781074 | MS.gene004041:intron | 40.0% | |
| TGATGTCCTCCTTAAAATGG+TGG | - | chr4.3:39780134-39780153 | MS.gene004041:intron | 40.0% | |
| TGGGTCTCATGATAGATTAG+TGG | - | chr4.3:39780928-39780947 | MS.gene004041:intron | 40.0% | |
| TTCCATTAAACAGAGCCCAA+AGG | + | chr4.3:39778325-39778344 | None:intergenic | 40.0% | |
| TTTATCCCTTTCCCCTTTCA+TGG | - | chr4.3:39779690-39779709 | MS.gene004041:intron | 40.0% | |
| ! | ACCCTAGAGACTTGTTCATT+AGG | - | chr4.3:39779844-39779863 | MS.gene004041:intron | 40.0% |
| ! | CAAAAGTCACACGGGTTTTA+AGG | + | chr4.3:39780204-39780223 | None:intergenic | 40.0% |
| ! | CTACTAGTCTAGAGTGTGTT+TGG | + | chr4.3:39779063-39779082 | None:intergenic | 40.0% |
| ! | CTAGAGACTTGTTCATTAGG+TGG | - | chr4.3:39779847-39779866 | MS.gene004041:intron | 40.0% |
| ! | GTCGGCTCTTAAAGTCTTAA+AGG | + | chr4.3:39780391-39780410 | None:intergenic | 40.0% |
| ! | TGACTATCGAATGTTGCTTC+TGG | - | chr4.3:39778188-39778207 | MS.gene004041:intron | 40.0% |
| ! | TTCCACCGTGCAAATTTTAG+GGG | - | chr4.3:39780008-39780027 | MS.gene004041:intron | 40.0% |
| !! | AATGTTGCTTCTGGACGTTT+TGG | - | chr4.3:39778197-39778216 | MS.gene004041:intron | 40.0% |
| !! | AGGAGGTTTTTGAAGGGTTT+GGG | + | chr4.3:39778852-39778871 | None:intergenic | 40.0% |
| !! | ATAACGGACTAGAGTGTGTT+TGG | + | chr4.3:39781012-39781031 | None:intergenic | 40.0% |
| !! | ATGTTGCTTCTGGACGTTTT+GGG | - | chr4.3:39778198-39778217 | MS.gene004041:intron | 40.0% |
| !! | CCATGGACTAGTTAGTTTGA+TGG | - | chr4.3:39778382-39778401 | MS.gene004041:intron | 40.0% |
| !! | GCTATTTTCATAAGTTGCCC+TGG | - | chr4.3:39780727-39780746 | MS.gene004041:intron | 40.0% |
| !! | GTTTAGATGGAAGGTTTTGG+AGG | - | chr4.3:39778674-39778693 | MS.gene004041:intron | 40.0% |
| !! | TATGGCTTTGTTAGGGTGAT+TGG | - | chr4.3:39781089-39781108 | MS.gene004041:intron | 40.0% |
| !! | TTCTGGAGGAGGTTTTTGAA+GGG | + | chr4.3:39778858-39778877 | None:intergenic | 40.0% |
| !! | TTGCTTGTTATGTGAAGCCA+TGG | - | chr4.3:39779274-39779293 | MS.gene004041:intron | 40.0% |
| !! | TTTCTGGAGGAGGTTTTTGA+AGG | + | chr4.3:39778859-39778878 | None:intergenic | 40.0% |
| !!! | AACTAGTTTTTGGGTTCTCC+TGG | + | chr4.3:39778897-39778916 | None:intergenic | 40.0% |
| !!! | CGATAGTCACACTGGTTTTA+AGG | + | chr4.3:39778177-39778196 | None:intergenic | 40.0% |
| !!! | TTAGATGGAAGGTTTTGGAG+GGG | - | chr4.3:39778676-39778695 | MS.gene004041:intron | 40.0% |
| AAAACACCCTTAAGCTCACC+AGG | - | chr4.3:39778876-39778895 | MS.gene004041:intron | 45.0% | |
| AACCCCTAAAATTTGCACGG+TGG | + | chr4.3:39780013-39780032 | None:intergenic | 45.0% | |
| AACTTCGAGGCGTAAATCTG+GGG | + | chr4.3:39779972-39779991 | None:intergenic | 45.0% | |
| AAGTTGCCCTGGACAACTTA+TGG | - | chr4.3:39780738-39780757 | MS.gene004041:intron | 45.0% | |
| AATGAGTGAACCTGCCAAAG+GGG | + | chr4.3:39780450-39780469 | None:intergenic | 45.0% | |
| ACTTATGTTACCCCCCTCAA+AGG | - | chr4.3:39777960-39777979 | MS.gene004041:CDS | 45.0% | |
| ATGAAGCCATGAAAGGGGAA+AGG | + | chr4.3:39779699-39779718 | None:intergenic | 45.0% | |
| ATGAAGGGCTGTCTATAGGT+TGG | + | chr4.3:39778582-39778601 | None:intergenic | 45.0% | |
| ATGTCTATAACGGCTTTCCC+TGG | - | chr4.3:39778495-39778514 | MS.gene004041:intron | 45.0% | |
| CAAACTTCGAGGCGTAAATC+TGG | + | chr4.3:39779974-39779993 | None:intergenic | 45.0% | |
| CAAATGAGTGAACCTGCCAA+AGG | + | chr4.3:39780452-39780471 | None:intergenic | 45.0% | |
| CCCTCTGTAACTCTTCATTC+TGG | - | chr4.3:39781052-39781071 | MS.gene004041:intron | 45.0% | |
| CTTATGTTACCCCCCTCAAA+GGG | - | chr4.3:39777961-39777980 | MS.gene004041:CDS | 45.0% | |
| GAAACACTTGTGAGACCGTT+TGG | + | chr4.3:39780827-39780846 | None:intergenic | 45.0% | |
| GCAACATTCGATAGTCACAC+TGG | + | chr4.3:39778185-39778204 | None:intergenic | 45.0% | |
| GCCAGAATGAAGAGTTACAG+AGG | + | chr4.3:39781056-39781075 | None:intergenic | 45.0% | |
| GCCTATATAGGCTGGATGAA+GGG | + | chr4.3:39778597-39778616 | None:intergenic | 45.0% | |
| GGGAAAGCCGTTATAGACAT+TGG | + | chr4.3:39778495-39778514 | None:intergenic | 45.0% | |
| GGTGAAAGCCGTAGTAATGT+CGG | + | chr4.3:39780409-39780428 | None:intergenic | 45.0% | |
| TCGATGAATGAAGCCACCAA+CGG | + | chr4.3:39778534-39778553 | None:intergenic | 45.0% | |
| TGAAGCCATGAAAGGGGAAA+GGG | + | chr4.3:39779698-39779717 | None:intergenic | 45.0% | |
| TGCCTATATAGGCTGGATGA+AGG | + | chr4.3:39778598-39778617 | None:intergenic | 45.0% | |
| TGTTATGACTTGAGCCCACA+AGG | - | chr4.3:39780545-39780564 | MS.gene004041:intron | 45.0% | |
| TTATGTTACCCCCCTCAAAG+GGG | - | chr4.3:39777962-39777981 | MS.gene004041:CDS | 45.0% | |
| ! | AATCTTGAGTTGCAGCTCCT+TGG | + | chr4.3:39781399-39781418 | None:intergenic | 45.0% |
| ! | GATTTGGAGCTGATCGATCA+TGG | + | chr4.3:39777872-39777891 | None:intergenic | 45.0% |
| ! | TAAATGTACCCCCTTTGAGG+GGG | + | chr4.3:39777974-39777993 | None:intergenic | 45.0% |
| !! | AGGTTTCCTCTTGCTTTTGC+AGG | + | chr4.3:39781306-39781325 | None:intergenic | 45.0% |
| !! | GACATTGGCTCATATAGAGG+TGG | + | chr4.3:39778480-39778499 | None:intergenic | 45.0% |
| !! | GAGGAGGTTTTTGAAGGGTT+TGG | + | chr4.3:39778853-39778872 | None:intergenic | 45.0% |
| !! | GGTTTCCTCTTGCTTTTGCA+GGG | + | chr4.3:39781305-39781324 | None:intergenic | 45.0% |
| !! | GGTTTTTGAAGGGTTTGGGA+TGG | + | chr4.3:39778848-39778867 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGGTGTTTTCTGG+AGG | + | chr4.3:39778872-39778891 | None:intergenic | 45.0% |
| !!! | GTGAGCTTAAGGGTGTTTTC+TGG | + | chr4.3:39778875-39778894 | None:intergenic | 45.0% |
| !!! | GTGCTGTTTTTCGGTACCTT+TGG | - | chr4.3:39779471-39779490 | MS.gene004041:intron | 45.0% |
| !!! | TTAAGGGTGTTTTCTGGAGG+AGG | + | chr4.3:39778869-39778888 | None:intergenic | 45.0% |
| AAAGGGCTGCCTATATAGGC+TGG | + | chr4.3:39778605-39778624 | None:intergenic | 50.0% | |
| AACCTCACCTGTCACGGATT+TGG | + | chr4.3:39777888-39777907 | None:intergenic | 50.0% | |
| AATGAAGCCACCAACGGGAA+AGG | + | chr4.3:39778528-39778547 | None:intergenic | 50.0% | |
| ATCAGCTCCAAATCCGTGAC+AGG | - | chr4.3:39777878-39777897 | MS.gene004041:CDS | 50.0% | |
| ATGAAGCCACCAACGGGAAA+GGG | + | chr4.3:39778527-39778546 | None:intergenic | 50.0% | |
| CGATGAATGAAGCCACCAAC+GGG | + | chr4.3:39778533-39778552 | None:intergenic | 50.0% | |
| CTCTGCACATCTTCGAACAC+AGG | + | chr4.3:39781326-39781345 | None:intergenic | 50.0% | |
| CTGGATGAAGGGCTGTCTAT+AGG | + | chr4.3:39778586-39778605 | None:intergenic | 50.0% | |
| GAGACCGTTTGGGAGAACTA+AGG | + | chr4.3:39780816-39780835 | None:intergenic | 50.0% | |
| GCCCTTCATCCAGCCTATAT+AGG | - | chr4.3:39778593-39778612 | MS.gene004041:intron | 50.0% | |
| GGTGGTATTCCTTTCCCCTT+TGG | - | chr4.3:39780433-39780452 | MS.gene004041:intron | 50.0% | |
| GGTTCTCCTGGTGAGCTTAA+GGG | + | chr4.3:39778885-39778904 | None:intergenic | 50.0% | |
| GTATTCCTTTCCCCTTTGGC+AGG | - | chr4.3:39780437-39780456 | MS.gene004041:intron | 50.0% | |
| TATGTTACCCCCCTCAAAGG+GGG | - | chr4.3:39777963-39777982 | MS.gene004041:CDS | 50.0% | |
| TTACTACGGCTTTCACCTGC+TGG | - | chr4.3:39780412-39780431 | MS.gene004041:intron | 50.0% | |
| TTTGGGAACCTCACCTGTCA+CGG | + | chr4.3:39777894-39777913 | None:intergenic | 50.0% | |
| ! | AAATGTACCCCCTTTGAGGG+GGG | + | chr4.3:39777973-39777992 | None:intergenic | 50.0% |
| ! | ACTCTATGCGTGTTGGCATG+AGG | - | chr4.3:39781359-39781378 | MS.gene004041:CDS | 50.0% |
| ! | CTGAAGCACTCTATGCGTGT+TGG | - | chr4.3:39781352-39781371 | MS.gene004041:CDS | 50.0% |
| !! | AGGTTTGCTGAGCTCAACCA+AGG | - | chr4.3:39781379-39781398 | MS.gene004041:CDS | 50.0% |
| !! | CATGAAAGCATCTCTCCACC+AGG | + | chr4.3:39781255-39781274 | None:intergenic | 50.0% |
| AACGGGAAAGGGATAACGCC+AGG | + | chr4.3:39778516-39778535 | None:intergenic | 55.0% | |
| ACGGGAAAGGGATAACGCCA+GGG | + | chr4.3:39778515-39778534 | None:intergenic | 55.0% | |
| ACTAGTCCATGGGCTCGACT+CGG | + | chr4.3:39778374-39778393 | None:intergenic | 55.0% | |
| CGTTATCCCTTTCCCGTTGG+TGG | - | chr4.3:39778518-39778537 | MS.gene004041:intron | 55.0% | |
| CTCCAAATCCGTGACAGGTG+AGG | - | chr4.3:39777883-39777902 | MS.gene004041:CDS | 55.0% | |
| GGGAAAGGAATACCACCAGC+AGG | + | chr4.3:39780430-39780449 | None:intergenic | 55.0% | |
| GGGTTCTCCTGGTGAGCTTA+AGG | + | chr4.3:39778886-39778905 | None:intergenic | 55.0% | |
| GTGAACCTGCCAAAGGGGAA+AGG | + | chr4.3:39780445-39780464 | None:intergenic | 55.0% | |
| TGGCGTTATCCCTTTCCCGT+TGG | - | chr4.3:39778515-39778534 | MS.gene004041:intron | 55.0% | |
| !!! | GATGGAAGGTTTTGGAGGGG+AGG | - | chr4.3:39778679-39778698 | MS.gene004041:intron | 55.0% |
| CTACGGCTTTCACCTGCTGG+TGG | - | chr4.3:39780415-39780434 | MS.gene004041:intron | 60.0% | |
| GTTATGCCGAGTCGAGCCCA+TGG | - | chr4.3:39778365-39778384 | MS.gene004041:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 39777805 | 39781420 | 39777805 | ID=MS.gene004041 |
| chr4.3 | mRNA | 39777805 | 39781420 | 39777805 | ID=MS.gene004041.t1;Parent=MS.gene004041 |
| chr4.3 | exon | 39781326 | 39781420 | 39781326 | ID=MS.gene004041.t1.exon1;Parent=MS.gene004041.t1 |
| chr4.3 | CDS | 39781326 | 39781420 | 39781326 | ID=cds.MS.gene004041.t1;Parent=MS.gene004041.t1 |
| chr4.3 | exon | 39777805 | 39777991 | 39777805 | ID=MS.gene004041.t1.exon2;Parent=MS.gene004041.t1 |
| chr4.3 | CDS | 39777805 | 39777991 | 39777805 | ID=cds.MS.gene004041.t1;Parent=MS.gene004041.t1 |
| Gene Sequence |
| Protein sequence |
