AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00413.t1 MTR_1g019620 94.366 355 3 1 1 338 1 355 0.0 671
MS.gene00413.t1 MTR_1g016110 93.803 355 5 1 1 338 1 355 0.0 665
MS.gene00413.t1 MTR_1g016110 98.377 308 5 0 31 338 1 308 0.0 614
MS.gene00413.t1 MTR_1g070360 34.228 298 144 10 37 326 17 270 5.14e-41 145
MS.gene00413.t1 MTR_6g086600 38.889 180 105 3 38 217 173 347 3.03e-29 117
MS.gene00413.t1 MTR_6g086600 38.889 180 105 3 38 217 164 338 3.17e-29 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00413.t1 AT5G50960 72.779 349 77 2 1 331 1 349 0.0 519
MS.gene00413.t1 AT4G19540 42.487 193 101 5 37 226 38 223 7.23e-37 135
MS.gene00413.t1 AT3G24430 38.333 180 106 3 38 217 172 346 2.77e-29 118

Find 86 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATTAAATTCAACATTTC+AGG 0.198831 1.4:-3685882 None:intergenic
CCTTCTAGGCCAAGCATCTT+TGG 0.224706 1.4:-3685381 None:intergenic
GGTGTATCTCTTGACCTTCT+AGG 0.281189 1.4:-3685395 None:intergenic
GTCTATGTTGAGTCTAATCT+TGG 0.283572 1.4:+3685441 MS.gene00413:CDS
AATCTTGGGGTCATGTCAAT+TGG 0.295181 1.4:+3685456 MS.gene00413:CDS
ATCCAGACGAAGCTGTTATA+TGG 0.325193 1.4:+3685493 MS.gene00413:CDS
TTTATGAAGATTACAGATAA+TGG 0.328286 1.4:+3685807 MS.gene00413:CDS
CTTCTAGGCCAAGCATCTTT+GGG 0.359162 1.4:-3685380 None:intergenic
CTAATTGTTGATGCTCCGCC+TGG 0.377996 1.4:+3685585 MS.gene00413:CDS
CAGCTAACGCAAATGCCAGC+TGG 0.379548 1.4:-3685305 None:intergenic
CCAAAGATGCTTGGCCTAGA+AGG 0.402010 1.4:+3685381 MS.gene00413:CDS
CCAAGCATCTTTGGGATGCT+TGG 0.406720 1.4:-3685372 None:intergenic
AAAGTCGGAGTGAAAGTTCT+TGG 0.411803 1.4:+3685735 MS.gene00413:CDS
TCTATGTTGAGTCTAATCTT+GGG 0.416626 1.4:+3685442 MS.gene00413:CDS
CACTGTGAAACATAAGATAC+TGG 0.420840 1.4:+3685239 MS.gene00413:CDS
AAGTCGGAGTGAAAGTTCTT+GGG 0.427598 1.4:+3685736 MS.gene00413:CDS
ATCTTGGGGTCATGTCAATT+GGG 0.431936 1.4:+3685457 MS.gene00413:CDS
CATAAGATACTGGTCTTGTC+AGG 0.432544 1.4:+3685249 MS.gene00413:CDS
TAAAGGAACCTTACCGAGAA+AGG 0.434619 1.4:-3685970 None:intergenic
ACTTGAGATTTGAGATGGGC+TGG 0.443213 1.4:-3685785 None:intergenic
AGCTAACGCAAATGCCAGCT+GGG 0.447107 1.4:-3685304 None:intergenic
GCAGAATCAGACTGAGGACC+TGG 0.452269 1.4:-3684064 None:intergenic
CTCCATATAACAGCTTCGTC+TGG 0.454307 1.4:-3685495 None:intergenic
CATAAACTTGAGATTTGAGA+TGG 0.455458 1.4:-3685790 None:intergenic
AGTGAAAGTTCTTGGGGTTG+TGG 0.458548 1.4:+3685743 MS.gene00413:CDS
CGTCTACATTAGCAGCATCT+AGG 0.458881 1.4:-3685641 None:intergenic
CTTTGCAAGGCAGCTGAAGA+AGG 0.475604 1.4:+3686002 MS.gene00413:CDS
GGCGGTACCCTTTCTCGGTA+AGG 0.476321 1.4:+3685962 MS.gene00413:CDS
CTTCTGGGCATTGATATTTG+TGG 0.483404 1.4:+3685348 MS.gene00413:CDS
GAGATGGCGGTACCCTTTCT+CGG 0.483462 1.4:+3685957 MS.gene00413:CDS
TGGTGAGATGAAAGATGTTA+CGG 0.483466 1.4:+3685827 MS.gene00413:CDS
GGTCCTCAGTCTGATTCTGC+TGG 0.484126 1.4:+3684067 MS.gene00413:CDS
ATGTGTTCATCTGAGGTTCC+AGG 0.485714 1.4:-3685603 None:intergenic
GGCATTTGCGTTAGCTGCAA+GGG 0.486589 1.4:+3685311 MS.gene00413:CDS
GAGACCAACCAAGGTTGCTC+TGG 0.487893 1.4:-3685416 None:intergenic
ATACGCTCGTTGGCATCCTC+AGG 0.491563 1.4:-3683937 None:intergenic
CTGTCAATGACGGCAAGTAA+TGG 0.494728 1.4:+3686110 MS.gene00413:CDS
GATTTGAGATGGGCTGGGAC+AGG 0.504393 1.4:-3685779 None:intergenic
TTGCAAAGCTGTGGATCTAA+AGG 0.505094 1.4:-3685987 None:intergenic
ATACTGGTCTTGTCAGGAAA+GGG 0.511385 1.4:+3685255 MS.gene00413:CDS
CTTGAGATTTGAGATGGGCT+GGG 0.511450 1.4:-3685784 None:intergenic
TCAGCTGCCTTGCAAAGCTG+TGG 0.521436 1.4:-3685996 None:intergenic
TGGCATTTGCGTTAGCTGCA+AGG 0.531152 1.4:+3685310 MS.gene00413:CDS
CCAAGCATCCCAAAGATGCT+TGG 0.531277 1.4:+3685372 MS.gene00413:CDS
GATAAGCTGATGGAAACTAG+TGG 0.534659 1.4:+3686086 MS.gene00413:CDS
AGATTAGACTCAACATAGAC+AGG 0.537946 1.4:-3685438 None:intergenic
AAAGGAACCTTACCGAGAAA+GGG 0.538294 1.4:-3685969 None:intergenic
GAGATACACCAGAGCAACCT+TGG 0.541471 1.4:+3685408 MS.gene00413:CDS
GATACTGGTCTTGTCAGGAA+AGG 0.542244 1.4:+3685254 MS.gene00413:CDS
TTGTCAGGAAAGGGAGGTGT+TGG 0.547516 1.4:+3685264 MS.gene00413:CDS
AGGTATATCTCCGTTCTCCA+TGG 0.548279 1.4:-3683917 None:intergenic
TACACCAGAGCAACCTTGGT+TGG 0.551299 1.4:+3685412 MS.gene00413:CDS
ATAACAGCTTCGTCTGGATG+AGG 0.554608 1.4:-3685489 None:intergenic
AATTGAAATGTGTTCATCTG+AGG 0.559191 1.4:-3685610 None:intergenic
ATAAACTTGAGATTTGAGAT+GGG 0.559421 1.4:-3685789 None:intergenic
AAAGATAATAGATAAGCTGA+TGG 0.562227 1.4:+3686076 MS.gene00413:CDS
GGTTGCCATTGCTGAAAGAA+TGG 0.567541 1.4:+3685215 MS.gene00413:CDS
AAATATATTCATACGCTCGT+TGG 0.569537 1.4:-3683947 None:intergenic
AGTGGCCATTCTTTCAGCAA+TGG 0.570251 1.4:-3685220 None:intergenic
ACTATCAAATACTTCACTGC+AGG 0.571986 1.4:-3685904 None:intergenic
CTATGTTGAGTCTAATCTTG+GGG 0.574536 1.4:+3685443 MS.gene00413:CDS
AACTAGTGGGCTGTCAATGA+CGG 0.579345 1.4:+3686100 MS.gene00413:CDS
GTGGCATTTACAGATTGCCC+AGG 0.582123 1.4:+3684046 MS.gene00413:intron
GACGAAGCTGTTATATGGAG+AGG 0.584494 1.4:+3685498 MS.gene00413:CDS
AGAAGAGCTTCCATGGAGAA+CGG 0.601117 1.4:+3683907 None:intergenic
ATAAGCTGATGGAAACTAGT+GGG 0.602164 1.4:+3686087 MS.gene00413:CDS
TTTAGATCCACAGCTTTGCA+AGG 0.603851 1.4:+3685989 MS.gene00413:CDS
GTTGAAGATGTGTAACGAGA+TGG 0.614173 1.4:+3685941 MS.gene00413:CDS
CAGAATCAGACTGAGGACCT+GGG 0.614924 1.4:-3684063 None:intergenic
AGTCGGAGTGAAAGTTCTTG+GGG 0.628178 1.4:+3685737 MS.gene00413:CDS
AAGAGAGACTTGTTGAGGAG+TGG 0.628280 1.4:-3685679 None:intergenic
AGATGAAAGATGTTACGGAG+TGG 0.628653 1.4:+3685832 MS.gene00413:CDS
CTAGATGCTGCTAATGTAGA+CGG 0.629983 1.4:+3685642 MS.gene00413:CDS
CTGGTCTTGTCAGGAAAGGG+AGG 0.640582 1.4:+3685258 MS.gene00413:CDS
TCAATAAGAGAGACTTGTTG+AGG 0.641146 1.4:-3685684 None:intergenic
GAAGTATTTGATAGTAGCCG+TGG 0.649921 1.4:+3685912 MS.gene00413:CDS
GTATTTGATAGTAGCCGTGG+TGG 0.653467 1.4:+3685915 MS.gene00413:CDS
GGGGTTGTGGAGAATATGAG+TGG 0.671351 1.4:+3685756 MS.gene00413:CDS
GGAAAATCTGATGCATGTGA+AGG 0.682695 1.4:+3684088 MS.gene00413:CDS
ACATCTTCAACGCTCCACCA+CGG 0.690721 1.4:-3685929 None:intergenic
TTTCCAGCAGAATCAGACTG+AGG 0.699719 1.4:-3684070 None:intergenic
CATAGACAGGAGACCAACCA+AGG 0.702138 1.4:-3685425 None:intergenic
GAAGATGTGTAACGAGATGG+CGG 0.710160 1.4:+3685944 MS.gene00413:CDS
GGAGAACGGAGATATACCTG+AGG 0.730578 1.4:+3683921 MS.gene00413:CDS
CAGTATCTTATGTTTCACAG+TGG 0.751734 1.4:-3685238 None:intergenic
TGTTCATCTGAGGTTCCAGG+CGG 0.754863 1.4:-3685600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATAATATTTTTTCTTAA+CGG + chr1.4:3685016-3685035 MS.gene00413:intron 10.0%
!!! AGTTTTTAAAAGATGTTTAT+TGG + chr1.4:3685547-3685566 MS.gene00413:CDS 15.0%
!!! GTTTTTAAAAGATGTTTATT+GGG + chr1.4:3685548-3685567 MS.gene00413:CDS 15.0%
!!! TTATTTTAATAAACTCTACA+GGG - chr1.4:3684370-3684389 None:intergenic 15.0%
!!! TTTTTAAAAGATGTTTATTG+GGG + chr1.4:3685549-3685568 MS.gene00413:CDS 15.0%
!! ATATTTATAATCTGTTTCAG+AGG - chr1.4:3684948-3684967 None:intergenic 20.0%
!! CTGTAGAGTTTATTAAAATA+AGG + chr1.4:3684369-3684388 MS.gene00413:intron 20.0%
!! TGAACAAGCTTATATAAATA+AGG - chr1.4:3684508-3684527 None:intergenic 20.0%
!! TTTATGAAGATTACAGATAA+TGG + chr1.4:3685807-3685826 MS.gene00413:CDS 20.0%
!!! AACATAAAAGCATAAGATAA+AGG - chr1.4:3684175-3684194 None:intergenic 20.0%
!!! ATGCTGATTAAATATTAAGT+TGG - chr1.4:3684919-3684938 None:intergenic 20.0%
!!! ATTAATCTTTTCATTCAAAC+AGG - chr1.4:3684233-3684252 None:intergenic 20.0%
!!! CGGATAATTTCTTAATTTTA+TGG + chr1.4:3685103-3685122 MS.gene00413:intron 20.0%
!!! CTTATTTTAATAAACTCTAC+AGG - chr1.4:3684371-3684390 None:intergenic 20.0%
!!! TATTTTTTCTTAACGGAAAT+TGG + chr1.4:3685023-3685042 MS.gene00413:intron 20.0%
!!! TTAATCTTTTCATTCAAACA+GGG - chr1.4:3684232-3684251 None:intergenic 20.0%
! AAAGATAATAGATAAGCTGA+TGG + chr1.4:3686076-3686095 MS.gene00413:CDS 25.0%
! AAATATGACATCAAGAAAGT+AGG - chr1.4:3685057-3685076 None:intergenic 25.0%
! ACCATCAACTACTTATATTT+AGG + chr1.4:3684206-3684225 MS.gene00413:intron 25.0%
! ATCATTCTCATTGCTTATTT+GGG + chr1.4:3684630-3684649 MS.gene00413:intron 25.0%
! ATTTGTTCAATTTGTGAAGT+TGG + chr1.4:3684844-3684863 MS.gene00413:intron 25.0%
! CAGATTATAAATATTCTCTC+TGG + chr1.4:3684954-3684973 MS.gene00413:intron 25.0%
! TATAGGGTTATTAATTCCTT+GGG + chr1.4:3684789-3684808 MS.gene00413:intron 25.0%
! TGAAACAATGGCAAAATAAA+AGG - chr1.4:3684982-3685001 None:intergenic 25.0%
! TTATAGGGTTATTAATTCCT+TGG + chr1.4:3684788-3684807 MS.gene00413:intron 25.0%
!! AAAATGATACTTTGAGTTCT+AGG + chr1.4:3684528-3684547 MS.gene00413:intron 25.0%
!! ATAAAAGCATAAGATAAAGG+CGG - chr1.4:3684172-3684191 None:intergenic 25.0%
!! ATAAACTTGAGATTTGAGAT+GGG - chr1.4:3685792-3685811 None:intergenic 25.0%
!! TCTATTATCTTTTGTAATGC+TGG - chr1.4:3686068-3686087 None:intergenic 25.0%
!!! TATAAGTAGTTGATGGTTAT+TGG - chr1.4:3684203-3684222 None:intergenic 25.0%
!!! TATTGTTTGGTCTTGTTATA+GGG + chr1.4:3684773-3684792 MS.gene00413:intron 25.0%
!!! TGCTTAGTTTGTTTATTGTT+TGG + chr1.4:3684760-3684779 MS.gene00413:intron 25.0%
!!! TTATTGTTTGGTCTTGTTAT+AGG + chr1.4:3684772-3684791 MS.gene00413:intron 25.0%
!!! TTCTTGTGTTTTTTGTATTG+TGG + chr1.4:3684027-3684046 MS.gene00413:intron 25.0%
!!! TTTGAGCATTTTTTTAACCT+TGG + chr1.4:3684564-3684583 MS.gene00413:intron 25.0%
AAATATATTCATACGCTCGT+TGG - chr1.4:3683950-3683969 None:intergenic 30.0%
AATTGAAATGTGTTCATCTG+AGG - chr1.4:3685613-3685632 None:intergenic 30.0%
ACCAAAATGCTTAAACATGA+AGG - chr1.4:3685155-3685174 None:intergenic 30.0%
CAATTAATCGTTTACCATGT+CGG + chr1.4:3684259-3684278 MS.gene00413:intron 30.0%
CATAAACTTGAGATTTGAGA+TGG - chr1.4:3685793-3685812 None:intergenic 30.0%
CATCATTCTCATTGCTTATT+TGG + chr1.4:3684629-3684648 MS.gene00413:intron 30.0%
GATAAGCTAAAATAAACCAG+TGG + chr1.4:3684474-3684493 MS.gene00413:intron 30.0%
GCCTAAATATAAGTAGTTGA+TGG - chr1.4:3684210-3684229 None:intergenic 30.0%
GCGATTAAATTCAACATTTC+AGG - chr1.4:3685885-3685904 None:intergenic 30.0%
GTTCATTTCATAGTTGTCAA+AGG - chr1.4:3684874-3684893 None:intergenic 30.0%
TACAGGGTAACTTACAAAAA+CGG - chr1.4:3684354-3684373 None:intergenic 30.0%
TATCTAATACATAAGCACCA+AGG - chr1.4:3684584-3684603 None:intergenic 30.0%
TCTATGTTGAGTCTAATCTT+GGG + chr1.4:3685442-3685461 MS.gene00413:CDS 30.0%
TGCCATTGTTTCAAAGTTAA+TGG + chr1.4:3684989-3685008 MS.gene00413:intron 30.0%
! GTGAATTTTTGCAAGAAAGT+CGG + chr1.4:3685720-3685739 MS.gene00413:CDS 30.0%
! TTTTCATTGTTCTTTTGCCT+TGG + chr1.4:3685179-3685198 MS.gene00413:intron 30.0%
!! ATACTTTGAGTTCTAGGATT+AGG + chr1.4:3684534-3684553 MS.gene00413:intron 30.0%
!! CACCATTAACTTTGAAACAA+TGG - chr1.4:3684994-3685013 None:intergenic 30.0%
!! TACTTTGAGTTCTAGGATTA+GGG + chr1.4:3684535-3684554 MS.gene00413:intron 30.0%
!!! CGTATGACATTTTTAAAGTC+AGG + chr1.4:3684707-3684726 MS.gene00413:intron 30.0%
!!! TTGGGTATAGTTTTGTGTAA+AGG + chr1.4:3684821-3684840 MS.gene00413:intron 30.0%
AACACAAGAATCAAAGTCAG+TGG - chr1.4:3684017-3684036 None:intergenic 35.0%
AACCATATCTGCAAAAACCA+AGG - chr1.4:3685199-3685218 None:intergenic 35.0%
ACTATCAAATACTTCACTGC+AGG - chr1.4:3685907-3685926 None:intergenic 35.0%
AGATTAGACTCAACATAGAC+AGG - chr1.4:3685441-3685460 None:intergenic 35.0%
ATAAGCTGATGGAAACTAGT+GGG + chr1.4:3686087-3686106 MS.gene00413:CDS 35.0%
ATCAGCTCTTTCATAGTTCA+TGG + chr1.4:3684678-3684697 MS.gene00413:intron 35.0%
ATTGAATGATGTCCAACACA+TGG - chr1.4:3684896-3684915 None:intergenic 35.0%
CACTGTGAAACATAAGATAC+TGG + chr1.4:3685239-3685258 MS.gene00413:CDS 35.0%
CAGTATCTTATGTTTCACAG+TGG - chr1.4:3685241-3685260 None:intergenic 35.0%
CTATGAAATGAACCATGTGT+TGG + chr1.4:3684881-3684900 MS.gene00413:intron 35.0%
CTATGTTGAGTCTAATCTTG+GGG + chr1.4:3685443-3685462 MS.gene00413:CDS 35.0%
GTCTATGTTGAGTCTAATCT+TGG + chr1.4:3685441-3685460 MS.gene00413:CDS 35.0%
TGGTGAGATGAAAGATGTTA+CGG + chr1.4:3685827-3685846 MS.gene00413:CDS 35.0%
TTGTAGTGTGATTTCTTTCC+AGG + chr1.4:3684604-3684623 MS.gene00413:intron 35.0%
! AAATAAGGACTTGTTTCCAC+TGG - chr1.4:3684493-3684512 None:intergenic 35.0%
! GCCTTCATGTTTAAGCATTT+TGG + chr1.4:3685151-3685170 MS.gene00413:intron 35.0%
! TAGATCGTGTTTTGCAGATA+AGG + chr1.4:3686025-3686044 MS.gene00413:CDS 35.0%
!! CTTATATATAAGCACCGACA+TGG - chr1.4:3684276-3684295 None:intergenic 35.0%
!! TACGACAATTGAGCTGTTTT+CGG + chr1.4:3685083-3685102 MS.gene00413:intron 35.0%
!! TCAATAAGAGAGACTTGTTG+AGG - chr1.4:3685687-3685706 None:intergenic 35.0%
!! TGGCACAAATTTGCTGATTT+GGG - chr1.4:3684118-3684137 None:intergenic 35.0%
!! TGGGTTGATTAGCAAAGAAA+TGG + chr1.4:3684649-3684668 MS.gene00413:intron 35.0%
!!! GATTTTCAAGTTGGTCTTCT+GGG + chr1.4:3685333-3685352 MS.gene00413:CDS 35.0%
AAAGGAACCTTACCGAGAAA+GGG - chr1.4:3685972-3685991 None:intergenic 40.0%
AAAGTCGGAGTGAAAGTTCT+TGG + chr1.4:3685735-3685754 MS.gene00413:CDS 40.0%
AACTTACGACATACCTACAC+AGG - chr1.4:3684410-3684429 None:intergenic 40.0%
AAGTCGGAGTGAAAGTTCTT+GGG + chr1.4:3685736-3685755 MS.gene00413:CDS 40.0%
AATCTTGGGGTCATGTCAAT+TGG + chr1.4:3685456-3685475 MS.gene00413:CDS 40.0%
AGATGAAAGATGTTACGGAG+TGG + chr1.4:3685832-3685851 MS.gene00413:CDS 40.0%
ATCCAGACGAAGCTGTTATA+TGG + chr1.4:3685493-3685512 MS.gene00413:CDS 40.0%
ATCTTGGGGTCATGTCAATT+GGG + chr1.4:3685457-3685476 MS.gene00413:CDS 40.0%
ATTCCTTGGGCATTTGACAT+TGG + chr1.4:3684802-3684821 MS.gene00413:intron 40.0%
CTAGATGCTGCTAATGTAGA+CGG + chr1.4:3685642-3685661 MS.gene00413:CDS 40.0%
GATAAGCTGATGGAAACTAG+TGG + chr1.4:3686086-3686105 MS.gene00413:CDS 40.0%
GGAAAATCTGATGCATGTGA+AGG + chr1.4:3684088-3684107 MS.gene00413:CDS 40.0%
GTTGAAGATGTGTAACGAGA+TGG + chr1.4:3685941-3685960 MS.gene00413:CDS 40.0%
TAAAGGAACCTTACCGAGAA+AGG - chr1.4:3685973-3685992 None:intergenic 40.0%
TTCCTTGGGCATTTGACATT+GGG + chr1.4:3684803-3684822 MS.gene00413:intron 40.0%
TTGCAAAGCTGTGGATCTAA+AGG - chr1.4:3685990-3686009 None:intergenic 40.0%
TTTAGATCCACAGCTTTGCA+AGG + chr1.4:3685989-3686008 MS.gene00413:CDS 40.0%
! GAAGTATTTGATAGTAGCCG+TGG + chr1.4:3685912-3685931 MS.gene00413:CDS 40.0%
! GTGACTTGTGAAACTGCTTA+TGG - chr1.4:3684437-3684456 None:intergenic 40.0%
!! ATACTGGTCTTGTCAGGAAA+GGG + chr1.4:3685255-3685274 MS.gene00413:CDS 40.0%
!! CATAAGATACTGGTCTTGTC+AGG + chr1.4:3685249-3685268 MS.gene00413:CDS 40.0%
!! CTTCTGGGCATTGATATTTG+TGG + chr1.4:3685348-3685367 MS.gene00413:CDS 40.0%
!! GTGGCACAAATTTGCTGATT+TGG - chr1.4:3684119-3684138 None:intergenic 40.0%
!! TGCCTTGGTTTTTGCAGATA+TGG + chr1.4:3685194-3685213 MS.gene00413:intron 40.0%
!! TTGATAAGCCCATTTTTGCG+TGG - chr1.4:3685525-3685544 None:intergenic 40.0%
!!! GGATTTTCAAGTTGGTCTTC+TGG + chr1.4:3685332-3685351 MS.gene00413:CDS 40.0%
AGCAATGAGAATGATGAGCC+TGG - chr1.4:3684625-3684644 None:intergenic 45.0%
AGTCGGAGTGAAAGTTCTTG+GGG + chr1.4:3685737-3685756 MS.gene00413:CDS 45.0%
AGTGAAAGTTCTTGGGGTTG+TGG + chr1.4:3685743-3685762 MS.gene00413:CDS 45.0%
AGTGGCCATTCTTTCAGCAA+TGG - chr1.4:3685223-3685242 None:intergenic 45.0%
ATAACAGCTTCGTCTGGATG+AGG - chr1.4:3685492-3685511 None:intergenic 45.0%
CGTCTACATTAGCAGCATCT+AGG - chr1.4:3685644-3685663 None:intergenic 45.0%
CTCCATATAACAGCTTCGTC+TGG - chr1.4:3685498-3685517 None:intergenic 45.0%
CTGTCAATGACGGCAAGTAA+TGG + chr1.4:3686110-3686129 MS.gene00413:CDS 45.0%
CTTCTAGGCCAAGCATCTTT+GGG - chr1.4:3685383-3685402 None:intergenic 45.0%
GAAGATGTGTAACGAGATGG+CGG + chr1.4:3685944-3685963 MS.gene00413:CDS 45.0%
GACGAAGCTGTTATATGGAG+AGG + chr1.4:3685498-3685517 MS.gene00413:CDS 45.0%
GGTGTATCTCTTGACCTTCT+AGG - chr1.4:3685398-3685417 None:intergenic 45.0%
GGTTGCCATTGCTGAAAGAA+TGG + chr1.4:3685215-3685234 MS.gene00413:CDS 45.0%
TACCCAATGTCAAATGCCCA+AGG - chr1.4:3684808-3684827 None:intergenic 45.0%
TTTCCAGCAGAATCAGACTG+AGG - chr1.4:3684073-3684092 None:intergenic 45.0%
! ACTTGAGATTTGAGATGGGC+TGG - chr1.4:3685788-3685807 None:intergenic 45.0%
! ATGTGTTCATCTGAGGTTCC+AGG - chr1.4:3685606-3685625 None:intergenic 45.0%
! CTTGAGATTTGAGATGGGCT+GGG - chr1.4:3685787-3685806 None:intergenic 45.0%
! GTATTTGATAGTAGCCGTGG+TGG + chr1.4:3685915-3685934 MS.gene00413:CDS 45.0%
!! AACTAGTGGGCTGTCAATGA+CGG + chr1.4:3686100-3686119 MS.gene00413:CDS 45.0%
!! AAGAGAGACTTGTTGAGGAG+TGG - chr1.4:3685682-3685701 None:intergenic 45.0%
!! GATACTGGTCTTGTCAGGAA+AGG + chr1.4:3685254-3685273 MS.gene00413:CDS 45.0%
!!! GCTGCAAGGGATTTTCAAGT+TGG + chr1.4:3685324-3685343 MS.gene00413:CDS 45.0%
AAAACAGCGTGTGCCTGTGT+AGG + chr1.4:3684394-3684413 MS.gene00413:intron 50.0%
AACCAGGGTCAGGTCCTTTA+GGG - chr1.4:3684145-3684164 None:intergenic 50.0%
ACATCTTCAACGCTCCACCA+CGG - chr1.4:3685932-3685951 None:intergenic 50.0%
AGATAAAGGCGGAACCAACC+AGG - chr1.4:3684161-3684180 None:intergenic 50.0%
AGCTAACGCAAATGCCAGCT+GGG - chr1.4:3685307-3685326 None:intergenic 50.0%
CAGAATCAGACTGAGGACCT+GGG - chr1.4:3684066-3684085 None:intergenic 50.0%
CATAGACAGGAGACCAACCA+AGG - chr1.4:3685428-3685447 None:intergenic 50.0%
CCAAAGATGCTTGGCCTAGA+AGG + chr1.4:3685381-3685400 MS.gene00413:CDS 50.0%
CCAAGCATCCCAAAGATGCT+TGG + chr1.4:3685372-3685391 MS.gene00413:CDS 50.0%
CCTTCTAGGCCAAGCATCTT+TGG - chr1.4:3685384-3685403 None:intergenic 50.0%
CTAATTGTTGATGCTCCGCC+TGG + chr1.4:3685585-3685604 MS.gene00413:CDS 50.0%
CTTTGCAAGGCAGCTGAAGA+AGG + chr1.4:3686002-3686021 MS.gene00413:CDS 50.0%
GAGATACACCAGAGCAACCT+TGG + chr1.4:3685408-3685427 MS.gene00413:CDS 50.0%
GATAAAGGCGGAACCAACCA+GGG - chr1.4:3684160-3684179 None:intergenic 50.0%
GGAGAACGGAGATATACCTG+AGG + chr1.4:3683921-3683940 MS.gene00413:CDS 50.0%
GGAGAGGTCCACGCAAAAAT+GGG + chr1.4:3685514-3685533 MS.gene00413:CDS 50.0%
GGCATTTGCGTTAGCTGCAA+GGG + chr1.4:3685311-3685330 MS.gene00413:CDS 50.0%
GGGGTTGTGGAGAATATGAG+TGG + chr1.4:3685756-3685775 MS.gene00413:CDS 50.0%
GTGGCATTTACAGATTGCCC+AGG + chr1.4:3684046-3684065 MS.gene00413:intron 50.0%
TACACCAGAGCAACCTTGGT+TGG + chr1.4:3685412-3685431 MS.gene00413:CDS 50.0%
TGGAGAGGTCCACGCAAAAA+TGG + chr1.4:3685513-3685532 MS.gene00413:CDS 50.0%
TGGCATTTGCGTTAGCTGCA+AGG + chr1.4:3685310-3685329 MS.gene00413:CDS 50.0%
! ATTTGTGCCACTGCCCCTAA+AGG + chr1.4:3684128-3684147 MS.gene00413:intron 50.0%
! TGTTCATCTGAGGTTCCAGG+CGG - chr1.4:3685603-3685622 None:intergenic 50.0%
! TTGTCAGGAAAGGGAGGTGT+TGG + chr1.4:3685264-3685283 MS.gene00413:CDS 50.0%
!! CCAAGCATCTTTGGGATGCT+TGG - chr1.4:3685375-3685394 None:intergenic 50.0%
ACCAGGGTCAGGTCCTTTAG+GGG - chr1.4:3684144-3684163 None:intergenic 55.0%
ATACGCTCGTTGGCATCCTC+AGG - chr1.4:3683940-3683959 None:intergenic 55.0%
CAACCAGGGTCAGGTCCTTT+AGG - chr1.4:3684146-3684165 None:intergenic 55.0%
CAGCTAACGCAAATGCCAGC+TGG - chr1.4:3685308-3685327 None:intergenic 55.0%
CTAAAGGACCTGACCCTGGT+TGG + chr1.4:3684144-3684163 MS.gene00413:intron 55.0%
GAGACCAACCAAGGTTGCTC+TGG - chr1.4:3685419-3685438 None:intergenic 55.0%
GCAGAATCAGACTGAGGACC+TGG - chr1.4:3684067-3684086 None:intergenic 55.0%
GGTCCTCAGTCTGATTCTGC+TGG + chr1.4:3684067-3684086 MS.gene00413:CDS 55.0%
TCAGCTGCCTTGCAAAGCTG+TGG - chr1.4:3685999-3686018 None:intergenic 55.0%
! GAGATGGCGGTACCCTTTCT+CGG + chr1.4:3685957-3685976 MS.gene00413:CDS 55.0%
! GAGCACATTTTCTGCCCAGC+TGG + chr1.4:3685290-3685309 MS.gene00413:CDS 55.0%
!! CTGGTCTTGTCAGGAAAGGG+AGG + chr1.4:3685258-3685277 MS.gene00413:CDS 55.0%
!! GATTTGAGATGGGCTGGGAC+AGG - chr1.4:3685782-3685801 None:intergenic 55.0%
GGCGGTACCCTTTCTCGGTA+AGG + chr1.4:3685962-3685981 MS.gene00413:CDS 60.0%
! GTCAGGTCCTTTAGGGGCAG+TGG - chr1.4:3684138-3684157 None:intergenic 60.0%
AGGCGGAACCAACCAGGGTC+AGG - chr1.4:3684155-3684174 None:intergenic 65.0%
GCCCCTAAAGGACCTGACCC+TGG + chr1.4:3684140-3684159 MS.gene00413:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 3683919 3686139 3683919 ID=MS.gene00413
chr1.4 mRNA 3683919 3686139 3683919 ID=MS.gene00413.t1;Parent=MS.gene00413
chr1.4 exon 3683919 3683955 3683919 ID=MS.gene00413.t1.exon1;Parent=MS.gene00413.t1
chr1.4 CDS 3683919 3683955 3683919 ID=cds.MS.gene00413.t1;Parent=MS.gene00413.t1
chr1.4 exon 3684059 3684109 3684059 ID=MS.gene00413.t1.exon2;Parent=MS.gene00413.t1
chr1.4 CDS 3684059 3684109 3684059 ID=cds.MS.gene00413.t1;Parent=MS.gene00413.t1
chr1.4 exon 3685211 3686139 3685211 ID=MS.gene00413.t1.exon3;Parent=MS.gene00413.t1
chr1.4 CDS 3685211 3686139 3685211 ID=cds.MS.gene00413.t1;Parent=MS.gene00413.t1
Gene Sequence

>MS.gene00413

ATGGAGAACGGAGATATACCTGAGGATGCCAACGAGCGTATGAATATATTTATTAATTATTATTATGTGTTTGAATTTTGCTGTTTCTATATATTCCACTGACTTTGATTCTTGTGTTTTTTGTATTGTGGCATTTACAGATTGCCCAGGTCCTCAGTCTGATTCTGCTGGAAAATCTGATGCATGTGAAGGTTTGCCCAAATCAGCAAATTTGTGCCACTGCCCCTAAAGGACCTGACCCTGGTTGGTTCCGCCTTTATCTTATGCTTTTATGTTTATTTCCAATAACCATCAACTACTTATATTTAGGCCCTGTTTGAATGAAAAGATTAATTAAACGCAATTAATCGTTTACCATGTCGGTGCTTATATATAAGCTATTTTGATAACAGATGATAAAATAAATCAAAGTGTTTTCATATAAACTATGAGCCGTTTTTGTAAGTTACCCTGTAGAGTTTATTAAAATAAGGTGAAAACAGCGTGTGCCTGTGTAGGTATGTCGTAAGTTGTGTCCATAAGCAGTTTCACAAGTCACACATGCTTATGTTAGTAGATAAGCTAAAATAAACCAGTGGAAACAAGTCCTTATTTATATAAGCTTGTTCAAAAATGATACTTTGAGTTCTAGGATTAGGGACTGTTTTTGAGCATTTTTTTAACCTTGGTGCTTATGTATTAGATATTGTAGTGTGATTTCTTTCCAGGCTCATCATTCTCATTGCTTATTTGGGTTGATTAGCAAAGAAATGGAATAAAATCAGCTCTTTCATAGTTCATGGCGTTGTCGTATGACATTTTTAAAGTCAGGACTAGTGAAACATTTTATGTGATATTGTTTTGCTTAGTTTGTTTATTGTTTGGTCTTGTTATAGGGTTATTAATTCCTTGGGCATTTGACATTGGGTATAGTTTTGTGTAAAGGATTTGTTCAATTTGTGAAGTTGGAGATCCTTTGACAACTATGAAATGAACCATGTGTTGGACATCATTCAATCCAACTTAATATTTAATCAGCATGTTTTTCCTCTGAAACAGATTATAAATATTCTCTCTGGATCCTTTTATTTTGCCATTGTTTCAAAGTTAATGGTGATAACATAATATTTTTTCTTAACGGAAATTGGTAGAAATACCTACTTTCTTGATGTCATATTTTTTCTGTACGACAATTGAGCTGTTTTCGGATAATTTCTTAATTTTATGGAATTGAGAATGTTGAGCAACAAATTGCCTTCATGTTTAAGCATTTTGGTGACATTTTCATTGTTCTTTTGCCTTGGTTTTTGCAGATATGGTTGCCATTGCTGAAAGAATGGCCACTGTGAAACATAAGATACTGGTCTTGTCAGGAAAGGGAGGTGTTGGCAAGAGCACATTTTCTGCCCAGCTGGCATTTGCGTTAGCTGCAAGGGATTTTCAAGTTGGTCTTCTGGGCATTGATATTTGTGGTCCAAGCATCCCAAAGATGCTTGGCCTAGAAGGTCAAGAGATACACCAGAGCAACCTTGGTTGGTCTCCTGTCTATGTTGAGTCTAATCTTGGGGTCATGTCAATTGGGTTCATGCTTCCTCATCCAGACGAAGCTGTTATATGGAGAGGTCCACGCAAAAATGGGCTTATCAAGCAGTTTTTAAAAGATGTTTATTGGGGTGAACTTGATTTTCTAATTGTTGATGCTCCGCCTGGAACCTCAGATGAACACATTTCAATTGTTCAATGCCTAGATGCTGCTAATGTAGACGGTGCAATCATAGTTACCACTCCTCAACAAGTCTCTCTTATTGATGAGAAAAAAGAAGTGAATTTTTGCAAGAAAGTCGGAGTGAAAGTTCTTGGGGTTGTGGAGAATATGAGTGGCCTGTCCCAGCCCATCTCAAATCTCAAGTTTATGAAGATTACAGATAATGGTGAGATGAAAGATGTTACGGAGTGGATATCAGAATACATGAAAGAAAAAGCGCCTGAAATGTTGAATTTAATCGCCTGCAGTGAAGTATTTGATAGTAGCCGTGGTGGAGCGTTGAAGATGTGTAACGAGATGGCGGTACCCTTTCTCGGTAAGGTTCCTTTAGATCCACAGCTTTGCAAGGCAGCTGAAGAAGGTAGATCGTGTTTTGCAGATAAGGATTGTGTCGTGAGCGTTCCAGCATTACAAAAGATAATAGATAAGCTGATGGAAACTAGTGGGCTGTCAATGACGGCAAGTAATGGAGTGTAG
Protein sequence

>MS.gene00413.t1

MENGDIPEDANEHCPGPQSDSAGKSDACEDMVAIAERMATVKHKILVLSGKGGVGKSTFSAQLAFALAARDFQVGLLGIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVESNLGVMSIGFMLPHPDEAVIWRGPRKNGLIKQFLKDVYWGELDFLIVDAPPGTSDEHISIVQCLDAANVDGAIIVTTPQQVSLIDEKKEVNFCKKVGVKVLGVVENMSGLSQPISNLKFMKITDNGEMKDVTEWISEYMKEKAPEMLNLIACSEVFDSSRGGALKMCNEMAVPFLGKVPLDPQLCKAAEEGRSCFADKDCVVSVPALQKIIDKLMETSGLSMTASNGV