Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036137.t1 | XP_013468554.1 | 99.3 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 5.90E-156 | 560.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036137.t1 | Q9CWD8 | 57.5 | 261 | 110 | 1 | 10 | 269 | 55 | 315 | 2.3e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036137.t1 | A0A072VLT3 | 99.3 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 4.3e-156 | 560.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051597 | MS.gene036137 | PPI |
| MS.gene24397 | MS.gene036137 | PPI |
| MS.gene00413 | MS.gene036137 | PPI |
| MS.gene044033 | MS.gene036137 | PPI |
| MS.gene57256 | MS.gene036137 | PPI |
| MS.gene016205 | MS.gene036137 | PPI |
| MS.gene67121 | MS.gene036137 | PPI |
| MS.gene33010 | MS.gene036137 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036137.t1 | MTR_1g070360 | 99.283 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 0.0 | 570 |
| MS.gene036137.t1 | MTR_6g086600 | 39.286 | 252 | 140 | 5 | 21 | 267 | 167 | 410 | 1.11e-54 | 184 |
| MS.gene036137.t1 | MTR_6g086600 | 38.824 | 255 | 143 | 5 | 18 | 267 | 173 | 419 | 1.13e-54 | 185 |
| MS.gene036137.t1 | MTR_1g016110 | 34.228 | 298 | 144 | 10 | 17 | 270 | 7 | 296 | 7.19e-37 | 133 |
| MS.gene036137.t1 | MTR_1g019620 | 34.228 | 298 | 144 | 10 | 17 | 270 | 54 | 343 | 1.09e-36 | 134 |
| MS.gene036137.t1 | MTR_1g016110 | 34.228 | 298 | 144 | 10 | 17 | 270 | 54 | 343 | 4.96e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036137.t1 | AT4G19540 | 68.702 | 262 | 82 | 0 | 15 | 276 | 36 | 297 | 7.74e-138 | 391 |
| MS.gene036137.t1 | AT3G24430 | 40.964 | 249 | 140 | 5 | 21 | 267 | 175 | 418 | 4.30e-56 | 189 |
| MS.gene036137.t1 | AT5G50960 | 34.237 | 295 | 143 | 9 | 17 | 265 | 54 | 343 | 3.23e-42 | 148 |
Find 81 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGATGTTGCATTAA+TGG | 0.159802 | 1.3:+50492622 | MS.gene036137:CDS |
| GGCGAACCTTCATATATATT+TGG | 0.186512 | 1.3:+50493857 | MS.gene036137:CDS |
| GATTCTGAGACATAGATATT+TGG | 0.283473 | 1.3:-50491924 | None:intergenic |
| AAATGACGAGGGGAGTTAAC+TGG | 0.330730 | 1.3:+50491851 | MS.gene036137:CDS |
| GTTCAATAAAGTTGATATTC+CGG | 0.350862 | 1.3:+50492667 | MS.gene036137:CDS |
| GATACCATAGCTATTGCTTC+TGG | 0.358686 | 1.3:+50489430 | MS.gene036137:CDS |
| GCGAAGCATCTTCGCATTGA+TGG | 0.362197 | 1.3:+50489400 | MS.gene036137:CDS |
| GGGATCAAGTGTATGTCAAT+AGG | 0.367929 | 1.3:+50491550 | MS.gene036137:CDS |
| TCTCAGAATCTGCAACTATC+AGG | 0.373762 | 1.3:+50491937 | MS.gene036137:CDS |
| TCTGTAGTTTCTAGAGCATA+TGG | 0.381576 | 1.3:+50494659 | MS.gene036137:CDS |
| TGGGGCCTCTCCAGACGATC+GGG | 0.385203 | 1.3:-50491594 | None:intergenic |
| TGATTCCCATTGATAGTTAC+GGG | 0.385809 | 1.3:+50491530 | MS.gene036137:CDS |
| AGAAGAATGCCCCGATCGTC+TGG | 0.396775 | 1.3:+50491584 | MS.gene036137:CDS |
| GTGTCGATGTTCATCATGAT+AGG | 0.396838 | 1.3:-50490546 | None:intergenic |
| TACCACTGGAAGTGGAGATC+AGG | 0.399284 | 1.3:+50494591 | MS.gene036137:CDS |
| GATATACCTTGAGTGACTTC+AGG | 0.399695 | 1.3:-50490573 | None:intergenic |
| GCTCTAGAAACTACAGAATC+AGG | 0.405926 | 1.3:-50494653 | None:intergenic |
| GTAAGTTCCAATTGAAGGTT+GGG | 0.411148 | 1.3:+50490490 | MS.gene036137:CDS |
| TGCAAGTAAGTTCCAATTGA+AGG | 0.420623 | 1.3:+50490485 | MS.gene036137:CDS |
| CAAGTAACCCAACCTTCAAT+TGG | 0.422756 | 1.3:-50490497 | None:intergenic |
| TCATAGCACAGCCACTGAAA+TGG | 0.425764 | 1.3:+50493892 | MS.gene036137:CDS |
| ATGATTCCCATTGATAGTTA+CGG | 0.432104 | 1.3:+50491529 | MS.gene036137:CDS |
| GTTCATCATGATAGGAATGT+TGG | 0.432777 | 1.3:-50490538 | None:intergenic |
| CTTGATCCCGTAACTATCAA+TGG | 0.438569 | 1.3:-50491536 | None:intergenic |
| CATAGCACAGCCACTGAAAT+GGG | 0.443169 | 1.3:+50493893 | MS.gene036137:CDS |
| ATCAGGGAAGCTTGTGATCA+AGG | 0.450807 | 1.3:+50494608 | MS.gene036137:CDS |
| GGATCAAGTGTATGTCAATA+GGG | 0.458082 | 1.3:+50491551 | MS.gene036137:CDS |
| TTACTTGATGCTGATGTGTA+TGG | 0.464843 | 1.3:+50490513 | MS.gene036137:CDS |
| ATATGGAAATATAGCTGAAA+AGG | 0.465410 | 1.3:+50494676 | MS.gene036137:CDS |
| ATAGCTATTGCTTCTGGTAA+AGG | 0.466248 | 1.3:+50489436 | MS.gene036137:CDS |
| ACATTTCATAGTAAAATCTC+TGG | 0.468648 | 1.3:-50494731 | None:intergenic |
| TCAGGTGCGGCCAACACTAT+CGG | 0.472607 | 1.3:-50494635 | None:intergenic |
| TTCATCATGATAGGAATGTT+GGG | 0.479590 | 1.3:-50490537 | None:intergenic |
| CCTTTACCAAATATATATGA+AGG | 0.479977 | 1.3:-50493863 | None:intergenic |
| CAGGTGCGGCCAACACTATC+GGG | 0.485473 | 1.3:-50494634 | None:intergenic |
| TGCATTAATGGATGCGAGAA+GGG | 0.486805 | 1.3:+50492634 | MS.gene036137:CDS |
| AATGACGAGGGGAGTTAACT+GGG | 0.488841 | 1.3:+50491852 | MS.gene036137:CDS |
| ATAGATATGCCTCCTGGCAC+TGG | 0.493130 | 1.3:+50491895 | MS.gene036137:CDS |
| AGTAAGTTCCAATTGAAGGT+TGG | 0.499750 | 1.3:+50490489 | MS.gene036137:CDS |
| ATGGGGCCTCTCCAGACGAT+CGG | 0.500251 | 1.3:-50491595 | None:intergenic |
| ATTCAAGATACCACTGGAAG+TGG | 0.501090 | 1.3:+50494583 | MS.gene036137:intron |
| CCTTCATATATATTTGGTAA+AGG | 0.504163 | 1.3:+50493863 | MS.gene036137:CDS |
| CATATATATTTGGTAAAGGA+GGG | 0.512882 | 1.3:+50493867 | MS.gene036137:CDS |
| CATCAAAGTTGATGAGGCCG+AGG | 0.513994 | 1.3:+50489254 | None:intergenic |
| TTGATCCCGTAACTATCAAT+GGG | 0.516228 | 1.3:-50491535 | None:intergenic |
| TCCATTAATGCAACATCTTG+AGG | 0.518038 | 1.3:-50492623 | None:intergenic |
| TCATATATATTTGGTAAAGG+AGG | 0.524591 | 1.3:+50493866 | MS.gene036137:CDS |
| CTGGTGATAGATATGCCTCC+TGG | 0.527506 | 1.3:+50491889 | MS.gene036137:CDS |
| GTCGGCAAATCAACAACTGC+TGG | 0.546887 | 1.3:+50489463 | MS.gene036137:CDS |
| AAAATTTAATCCCATTTCAG+TGG | 0.548951 | 1.3:-50493903 | None:intergenic |
| TCAGGGAAGCTTGTGATCAA+GGG | 0.553420 | 1.3:+50494609 | MS.gene036137:CDS |
| GATCGTCTGGAGAGGCCCCA+TGG | 0.554959 | 1.3:+50491597 | MS.gene036137:CDS |
| ATTTGGACATCACCAGTGCC+AGG | 0.555591 | 1.3:-50491907 | None:intergenic |
| GCTTCTGGTAAAGGCGGTGT+CGG | 0.565622 | 1.3:+50489445 | MS.gene036137:CDS |
| ACCACTGGAAGTGGAGATCA+GGG | 0.566063 | 1.3:+50494592 | MS.gene036137:CDS |
| TGCTTTAAATGTCCACATTG+TGG | 0.569694 | 1.3:+50493836 | MS.gene036137:CDS |
| TTATCGATTCAAGATACCAC+TGG | 0.571247 | 1.3:+50494577 | MS.gene036137:intron |
| TTGCATTAATGGATGCGAGA+AGG | 0.572149 | 1.3:+50492633 | MS.gene036137:CDS |
| TTTCATTGTGATCAGTGGCT+AGG | 0.581373 | 1.3:+50489361 | MS.gene036137:intron |
| ATATATATTTGGTAAAGGAG+GGG | 0.592261 | 1.3:+50493868 | MS.gene036137:CDS |
| GCATTAATGGATGCGAGAAG+GGG | 0.600484 | 1.3:+50492635 | MS.gene036137:CDS |
| TCCCTGATCTCCACTTCCAG+TGG | 0.604175 | 1.3:-50494593 | None:intergenic |
| TTTACCAGAAGCAATAGCTA+TGG | 0.617990 | 1.3:-50489434 | None:intergenic |
| AAAGGTTGTTCAGAAACTCA+AGG | 0.620310 | 1.3:+50494694 | MS.gene036137:CDS |
| GGGGCCTCTCCAGACGATCG+GGG | 0.629673 | 1.3:-50491593 | None:intergenic |
| TCAAGGGCACCCGATAGTGT+TGG | 0.640121 | 1.3:+50494625 | MS.gene036137:CDS |
| AATGCCCCGATCGTCTGGAG+AGG | 0.641120 | 1.3:+50491589 | MS.gene036137:CDS |
| AGCTCTTGAGAAAATGACGA+GGG | 0.641120 | 1.3:+50491840 | MS.gene036137:CDS |
| TATCTATCACCAGAATGTCA+AGG | 0.659018 | 1.3:-50491879 | None:intergenic |
| ATCAAAGTTGATGAGGCCGA+GGG | 0.661654 | 1.3:+50489255 | None:intergenic |
| GCTATTGCTTCTGGTAAAGG+CGG | 0.674617 | 1.3:+50489439 | MS.gene036137:CDS |
| ACAAAGCCTGAAGTCACTCA+AGG | 0.675264 | 1.3:+50490567 | MS.gene036137:CDS |
| TATGAAGGTTCGCCACAATG+TGG | 0.675582 | 1.3:-50493848 | None:intergenic |
| ATGACGAGGGGAGTTAACTG+GGG | 0.676508 | 1.3:+50491853 | MS.gene036137:CDS |
| TCGGGGCATTCTTCTCCACA+AGG | 0.698186 | 1.3:-50491576 | None:intergenic |
| AGAAACTACAGAATCAGGTG+CGG | 0.700617 | 1.3:-50494648 | None:intergenic |
| AAGCTCTTGAGAAAATGACG+AGG | 0.702011 | 1.3:+50491839 | MS.gene036137:CDS |
| GCTCTTGAGAAAATGACGAG+GGG | 0.708702 | 1.3:+50491841 | MS.gene036137:CDS |
| TATGTCAATAGGGTTCCTTG+TGG | 0.727496 | 1.3:+50491561 | MS.gene036137:CDS |
| TGACGAGGGGAGTTAACTGG+GGG | 0.736165 | 1.3:+50491854 | MS.gene036137:CDS |
| TGGACATCACCAGTGCCAGG+AGG | 0.736378 | 1.3:-50491904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATAATTGCATTTTA+TGG | + | chr1.3:50489338-50489357 | MS.gene036137:intron | 10.0% |
| !! | AAATTAATTAAGAAAGACAT+AGG | + | chr1.3:50494173-50494192 | MS.gene036137:intron | 15.0% |
| !! | ATTTACAAAAATTCATAATC+AGG | - | chr1.3:50492724-50492743 | None:intergenic | 15.0% |
| !! | TATATTTCATTTAGAAGAAA+AGG | - | chr1.3:50494268-50494287 | None:intergenic | 15.0% |
| !!! | AATTATTAAGCTTTGTTTTA+TGG | + | chr1.3:50491435-50491454 | MS.gene036137:intron | 15.0% |
| !!! | ATGTCTTTCTTAATTAATTT+TGG | - | chr1.3:50494173-50494192 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTACTTATTTCA+CGG | + | chr1.3:50493626-50493645 | MS.gene036137:intron | 15.0% |
| !!! | CAATTTTAAAACAAAGATAA+TGG | - | chr1.3:50491398-50491417 | None:intergenic | 15.0% |
| !!! | GATTATGAATTTTTGTAAAT+TGG | + | chr1.3:50492724-50492743 | MS.gene036137:intron | 15.0% |
| !!! | TGTCTTTCTTAATTAATTTT+GGG | - | chr1.3:50494172-50494191 | None:intergenic | 15.0% |
| !!! | TTTATTTGAATTTTTATTGC+TGG | + | chr1.3:50491799-50491818 | MS.gene036137:intron | 15.0% |
| !!! | TTTTTTAAATTAAGATTGCA+GGG | + | chr1.3:50489919-50489938 | MS.gene036137:intron | 15.0% |
| !!! | TTTTTTTAAATTAAGATTGC+AGG | + | chr1.3:50489918-50489937 | MS.gene036137:intron | 15.0% |
| !! | AAAAAAAACTAAATAATGCC+AGG | + | chr1.3:50494104-50494123 | MS.gene036137:intron | 20.0% |
| !! | AAAAAAACTAAATAATGCCA+GGG | + | chr1.3:50494105-50494124 | MS.gene036137:intron | 20.0% |
| !! | AATAGTTAATGAAAGTGAAA+AGG | - | chr1.3:50491664-50491683 | None:intergenic | 20.0% |
| !! | AATATTTCTCTATAATGTAC+TGG | + | chr1.3:50490600-50490619 | MS.gene036137:intron | 20.0% |
| !! | AATGAAAAGTTTAGCAATAT+CGG | + | chr1.3:50494050-50494069 | MS.gene036137:intron | 20.0% |
| !! | ACAAAAATAACCAATGAAAA+AGG | - | chr1.3:50492563-50492582 | None:intergenic | 20.0% |
| !! | ATAACTACAATTTATGAACT+TGG | + | chr1.3:50491334-50491353 | MS.gene036137:intron | 20.0% |
| !! | TAAAACGAGAAAATGATTAT+CGG | - | chr1.3:50494299-50494318 | None:intergenic | 20.0% |
| !! | TAATCAGCAAATATTACATA+TGG | - | chr1.3:50491158-50491177 | None:intergenic | 20.0% |
| !! | TTAAAATCTAGACAAAGTAA+AGG | - | chr1.3:50492065-50492084 | None:intergenic | 20.0% |
| !! | TTATTTCAGTTTATTGTTGT+CGG | + | chr1.3:50493112-50493131 | MS.gene036137:intron | 20.0% |
| !!! | ATTGTTTCTAATTTGAAGTT+AGG | + | chr1.3:50489657-50489676 | MS.gene036137:intron | 20.0% |
| !!! | CAAATTAGAAACAATTTTAG+AGG | - | chr1.3:50489652-50489671 | None:intergenic | 20.0% |
| !!! | GAAATGGGATTAAATTTTTT+GGG | + | chr1.3:50493908-50493927 | MS.gene036137:CDS | 20.0% |
| !!! | TAATCATTTTCTCGTTTTAT+TGG | + | chr1.3:50494300-50494319 | MS.gene036137:intron | 20.0% |
| !!! | TATTTGCTGATTATCATAAA+TGG | + | chr1.3:50491165-50491184 | MS.gene036137:intron | 20.0% |
| !!! | TGAAATGGGATTAAATTTTT+TGG | + | chr1.3:50493907-50493926 | MS.gene036137:CDS | 20.0% |
| !!! | TGCTTCTATTATATGTTTTA+AGG | + | chr1.3:50493602-50493621 | MS.gene036137:intron | 20.0% |
| !!! | TTTTTAAATTAAGATTGCAG+GGG | + | chr1.3:50489920-50489939 | MS.gene036137:intron | 20.0% |
| ! | AAAAAACTAAATAATGCCAG+GGG | + | chr1.3:50494106-50494125 | MS.gene036137:intron | 25.0% |
| ! | AAAATTTAATCCCATTTCAG+TGG | - | chr1.3:50493906-50493925 | None:intergenic | 25.0% |
| ! | AATAAATATGTAAACACACC+CGG | + | chr1.3:50493370-50493389 | MS.gene036137:intron | 25.0% |
| ! | AATGAAAAAGGTTAAGTGAA+TGG | - | chr1.3:50492551-50492570 | None:intergenic | 25.0% |
| ! | ATAAACTGAAATAAGCCATT+AGG | - | chr1.3:50493106-50493125 | None:intergenic | 25.0% |
| ! | ATATATATTTGGTAAAGGAG+GGG | + | chr1.3:50493868-50493887 | MS.gene036137:CDS | 25.0% |
| ! | ATATGGAAATATAGCTGAAA+AGG | + | chr1.3:50494676-50494695 | MS.gene036137:CDS | 25.0% |
| ! | CAAATAAAAAACAGTAGAAG+TGG | - | chr1.3:50491787-50491806 | None:intergenic | 25.0% |
| ! | CATATATATTTGGTAAAGGA+GGG | + | chr1.3:50493867-50493886 | MS.gene036137:CDS | 25.0% |
| ! | CATGCATTTAGAAATCTTAA+TGG | + | chr1.3:50493480-50493499 | MS.gene036137:intron | 25.0% |
| ! | CATTAAGATTTCTAAATGCA+TGG | - | chr1.3:50493482-50493501 | None:intergenic | 25.0% |
| ! | CCTTCATATATATTTGGTAA+AGG | + | chr1.3:50493863-50493882 | MS.gene036137:CDS | 25.0% |
| ! | CCTTTACCAAATATATATGA+AGG | - | chr1.3:50493866-50493885 | None:intergenic | 25.0% |
| ! | GGGTTGAACAATAAATTTAA+GGG | - | chr1.3:50490119-50490138 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATAAAATTAG+CGG | + | chr1.3:50489839-50489858 | MS.gene036137:intron | 25.0% |
| ! | TATATCAGCCATTTCTTATT+TGG | + | chr1.3:50493704-50493723 | MS.gene036137:intron | 25.0% |
| ! | TCAAAGGACAATTAGTAATT+TGG | - | chr1.3:50492506-50492525 | None:intergenic | 25.0% |
| ! | TCATATATATTTGGTAAAGG+AGG | + | chr1.3:50493866-50493885 | MS.gene036137:CDS | 25.0% |
| ! | TCCCAAAAAAAAAAACTGAA+CGG | - | chr1.3:50494408-50494427 | None:intergenic | 25.0% |
| ! | TCTAAATCTAGAAATCCTAA+TGG | + | chr1.3:50493307-50493326 | MS.gene036137:intron | 25.0% |
| ! | TGGGATTTATTGAATATATC+AGG | - | chr1.3:50492115-50492134 | None:intergenic | 25.0% |
| ! | TGTTGCTAAAATTAGAGTTT+AGG | + | chr1.3:50493448-50493467 | MS.gene036137:intron | 25.0% |
| ! | TTATTTCCATAAGTTCTTCA+GGG | - | chr1.3:50490284-50490303 | None:intergenic | 25.0% |
| ! | TTCAATAAATCCCATAAAGA+AGG | + | chr1.3:50492121-50492140 | MS.gene036137:intron | 25.0% |
| ! | TTCTCAGAAAAAGTTAAAGT+GGG | - | chr1.3:50490877-50490896 | None:intergenic | 25.0% |
| ! | TTTGCCTTAGAAAAACAATT+GGG | - | chr1.3:50492899-50492918 | None:intergenic | 25.0% |
| !! | AGTGATAATGTTAAAGCAAT+AGG | + | chr1.3:50491016-50491035 | MS.gene036137:intron | 25.0% |
| !! | ATTAGGATTTCTAGATTTAG+AGG | - | chr1.3:50493308-50493327 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATAAGTTCTCT+CGG | + | chr1.3:50490321-50490340 | MS.gene036137:intron | 25.0% |
| !! | TCTCAACACATGATATTTTT+AGG | + | chr1.3:50491291-50491310 | MS.gene036137:intron | 25.0% |
| !! | TGGGTTGAACAATAAATTTA+AGG | - | chr1.3:50490120-50490139 | None:intergenic | 25.0% |
| !! | TTTTAAATCATCCACTTCAT+TGG | + | chr1.3:50491208-50491227 | MS.gene036137:intron | 25.0% |
| !! | TTTTATTGCTGGATTATCAT+AGG | + | chr1.3:50491810-50491829 | MS.gene036137:intron | 25.0% |
| !! | TTTTGCCTTAGAAAAACAAT+TGG | - | chr1.3:50492900-50492919 | None:intergenic | 25.0% |
| !!! | ACCGTTCAGTTTTTTTTTTT+GGG | + | chr1.3:50494404-50494423 | MS.gene036137:intron | 25.0% |
| !!! | ATTCACTTAACCTTTTTCAT+TGG | + | chr1.3:50492550-50492569 | MS.gene036137:intron | 25.0% |
| !!! | GTGCTGTTTTCAATAATTTA+AGG | - | chr1.3:50494488-50494507 | None:intergenic | 25.0% |
| !!! | GTTCAATAAAGTTGATATTC+CGG | + | chr1.3:50492667-50492686 | MS.gene036137:CDS | 25.0% |
| !!! | TTCATTGGTTATTTTTGTCA+TGG | + | chr1.3:50492565-50492584 | MS.gene036137:intron | 25.0% |
| !!! | TTGAAAGTGTTGTCAAATAT+CGG | + | chr1.3:50492186-50492205 | MS.gene036137:intron | 25.0% |
| AAAATTGCTTGAATGTAGAG+TGG | - | chr1.3:50490996-50491015 | None:intergenic | 30.0% | |
| AAAGTGAGAAGAATGTAAAG+TGG | - | chr1.3:50490171-50490190 | None:intergenic | 30.0% | |
| AAATATGTGTCTTACCAAAC+AGG | + | chr1.3:50490093-50490112 | MS.gene036137:intron | 30.0% | |
| AAGACACATATTTGAGCTTA+TGG | - | chr1.3:50490086-50490105 | None:intergenic | 30.0% | |
| AATAAATTTAAGGGCCTGTT+TGG | - | chr1.3:50490110-50490129 | None:intergenic | 30.0% | |
| AATCCAAAAAACCAATGAAG+TGG | - | chr1.3:50491222-50491241 | None:intergenic | 30.0% | |
| AATGTAAAGTGGTTTCTGTT+CGG | - | chr1.3:50490160-50490179 | None:intergenic | 30.0% | |
| ATCCAATACATAACTAGAAG+AGG | + | chr1.3:50491249-50491268 | MS.gene036137:intron | 30.0% | |
| CATGCATTTAGAAATCCTAA+TGG | + | chr1.3:50493088-50493107 | MS.gene036137:intron | 30.0% | |
| CATTAGGATTTCTAAATGCA+TGG | - | chr1.3:50493090-50493109 | None:intergenic | 30.0% | |
| CATTGTACCATTACTACATT+TGG | + | chr1.3:50492945-50492964 | MS.gene036137:intron | 30.0% | |
| CTATGTAGCATCTACAATTT+AGG | - | chr1.3:50490841-50490860 | None:intergenic | 30.0% | |
| CTTATTTCCATAAGTTCTTC+AGG | - | chr1.3:50490285-50490304 | None:intergenic | 30.0% | |
| CTTCTCAGAAAAAGTTAAAG+TGG | - | chr1.3:50490878-50490897 | None:intergenic | 30.0% | |
| GAAAATGACAATTACCAAAC+AGG | + | chr1.3:50490026-50490045 | MS.gene036137:intron | 30.0% | |
| GAATGGAAACTTGATAAGAA+AGG | - | chr1.3:50492534-50492553 | None:intergenic | 30.0% | |
| GATAAGAAAGGTCATTTCAA+AGG | - | chr1.3:50492522-50492541 | None:intergenic | 30.0% | |
| GATATAAGCCTATGTTTGAT+AGG | + | chr1.3:50489596-50489615 | MS.gene036137:intron | 30.0% | |
| GGATACATTTACACAAAAGT+GGG | - | chr1.3:50490139-50490158 | None:intergenic | 30.0% | |
| GTAACTAACCATTTAGGAAT+CGG | + | chr1.3:50491959-50491978 | MS.gene036137:intron | 30.0% | |
| GTTCTATCATAAACCATGTT+TGG | + | chr1.3:50493268-50493287 | MS.gene036137:intron | 30.0% | |
| TAACCAAACCTATCAAACAT+AGG | - | chr1.3:50489607-50489626 | None:intergenic | 30.0% | |
| TAACTAACCATTTAGGAATC+GGG | + | chr1.3:50491960-50491979 | MS.gene036137:intron | 30.0% | |
| TATCAGGTAACTAACCATTT+AGG | + | chr1.3:50491953-50491972 | MS.gene036137:intron | 30.0% | |
| TATGATTCCCAAAATCTGTA+AGG | - | chr1.3:50493804-50493823 | None:intergenic | 30.0% | |
| TCATTATCAGCAACCTATAT+TGG | - | chr1.3:50493663-50493682 | None:intergenic | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr1.3:50493264-50493283 | None:intergenic | 30.0% | |
| TGTGAACACCAAATAAGAAA+TGG | - | chr1.3:50493715-50493734 | None:intergenic | 30.0% | |
| TTACGCGAACAGAAAATTAT+TGG | - | chr1.3:50491495-50491514 | None:intergenic | 30.0% | |
| TTCATCATGATAGGAATGTT+GGG | - | chr1.3:50490540-50490559 | None:intergenic | 30.0% | |
| ! | AGCTTAAAATGATGAGCTTT+TGG | + | chr1.3:50492301-50492320 | MS.gene036137:intron | 30.0% |
| ! | ATGATTCCCATTGATAGTTA+CGG | + | chr1.3:50491529-50491548 | MS.gene036137:CDS | 30.0% |
| ! | ATTTCTACATGTGTGCTTTT+AGG | + | chr1.3:50490920-50490939 | MS.gene036137:intron | 30.0% |
| ! | CTTTGTTTGCTAAAGAATAG+CGG | + | chr1.3:50489721-50489740 | MS.gene036137:intron | 30.0% |
| ! | GCATCTACAATTTAGGTTAA+AGG | - | chr1.3:50490834-50490853 | None:intergenic | 30.0% |
| ! | TCAACTAATAAGAGCTTGTT+TGG | - | chr1.3:50490402-50490421 | None:intergenic | 30.0% |
| !! | AGATTTTTCAATTACCACCA+TGG | + | chr1.3:50492239-50492258 | MS.gene036137:intron | 30.0% |
| !! | GACTAAATTTTGAGAGATTG+AGG | + | chr1.3:50494221-50494240 | MS.gene036137:intron | 30.0% |
| !! | GATTCTGAGACATAGATATT+TGG | - | chr1.3:50491927-50491946 | None:intergenic | 30.0% |
| !! | TCATCCCAATTGTTTTTCTA+AGG | + | chr1.3:50492892-50492911 | MS.gene036137:intron | 30.0% |
| !!! | ACTTCATTGGTTTTTTGGAT+TGG | + | chr1.3:50491221-50491240 | MS.gene036137:intron | 30.0% |
| !!! | GACCGTTCAGTTTTTTTTTT+TGG | + | chr1.3:50494403-50494422 | MS.gene036137:intron | 30.0% |
| !!! | TGGTTAGTTTTGAGTTGAAT+TGG | + | chr1.3:50489621-50489640 | MS.gene036137:intron | 30.0% |
| AAAGGTTGTTCAGAAACTCA+AGG | + | chr1.3:50494694-50494713 | MS.gene036137:CDS | 35.0% | |
| AAGCCTATGTTTGATAGGTT+TGG | + | chr1.3:50489601-50489620 | MS.gene036137:intron | 35.0% | |
| AATGGCTGATATATCAATGC+AGG | - | chr1.3:50493697-50493716 | None:intergenic | 35.0% | |
| AATTTCTGCTTTCCCTTGAT+TGG | + | chr1.3:50491635-50491654 | MS.gene036137:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1.3:50493296-50493315 | None:intergenic | 35.0% | |
| AGTAAGTTCCAATTGAAGGT+TGG | + | chr1.3:50490489-50490508 | MS.gene036137:CDS | 35.0% | |
| ATAGCTATTGCTTCTGGTAA+AGG | + | chr1.3:50489436-50489455 | MS.gene036137:CDS | 35.0% | |
| ATCCATGCCAAATGTAGTAA+TGG | - | chr1.3:50492955-50492974 | None:intergenic | 35.0% | |
| ATGACTGAAAAAGACCTGTT+TGG | - | chr1.3:50490043-50490062 | None:intergenic | 35.0% | |
| ATTATTGGCATGAACTGCAA+TGG | - | chr1.3:50491480-50491499 | None:intergenic | 35.0% | |
| CGGATACATTTACACAAAAG+TGG | - | chr1.3:50490140-50490159 | None:intergenic | 35.0% | |
| GATTAACAGACATCAAAGCT+AGG | - | chr1.3:50493765-50493784 | None:intergenic | 35.0% | |
| GCTATAAGCTGCAAATTGAA+GGG | - | chr1.3:50489497-50489516 | None:intergenic | 35.0% | |
| GCTATTGCTGTATCTTTCAT+GGG | + | chr1.3:50494370-50494389 | MS.gene036137:intron | 35.0% | |
| GGATCAAGTGTATGTCAATA+GGG | + | chr1.3:50491551-50491570 | MS.gene036137:CDS | 35.0% | |
| GGATTTCAACCAACTTAATG+AGG | - | chr1.3:50493010-50493029 | None:intergenic | 35.0% | |
| GGCGAACCTTCATATATATT+TGG | + | chr1.3:50493857-50493876 | MS.gene036137:CDS | 35.0% | |
| GTAAGTTCCAATTGAAGGTT+GGG | + | chr1.3:50490490-50490509 | MS.gene036137:CDS | 35.0% | |
| GTTCATCATGATAGGAATGT+TGG | - | chr1.3:50490541-50490560 | None:intergenic | 35.0% | |
| TACCATTACTACATTTGGCA+TGG | + | chr1.3:50492950-50492969 | MS.gene036137:intron | 35.0% | |
| TACTGGTACAGACACAATAT+GGG | + | chr1.3:50490617-50490636 | MS.gene036137:intron | 35.0% | |
| TATCTATCACCAGAATGTCA+AGG | - | chr1.3:50491882-50491901 | None:intergenic | 35.0% | |
| TATGGTTTCATTGTGATCAG+TGG | + | chr1.3:50489356-50489375 | MS.gene036137:intron | 35.0% | |
| TCAAATGTGATCACACATGT+CGG | + | chr1.3:50490778-50490797 | MS.gene036137:intron | 35.0% | |
| TCACTTAATACCAGGAATAG+AGG | - | chr1.3:50494513-50494532 | None:intergenic | 35.0% | |
| TCCATTAATGCAACATCTTG+AGG | - | chr1.3:50492626-50492645 | None:intergenic | 35.0% | |
| TCCTCAAGATGTTGCATTAA+TGG | + | chr1.3:50492622-50492641 | MS.gene036137:CDS | 35.0% | |
| TGAATGAAACCAGTAGTGTT+TGG | - | chr1.3:50492805-50492824 | None:intergenic | 35.0% | |
| TGCAAATCTCACTTAATACC+AGG | - | chr1.3:50494521-50494540 | None:intergenic | 35.0% | |
| TGCAAGTAAGTTCCAATTGA+AGG | + | chr1.3:50490485-50490504 | MS.gene036137:CDS | 35.0% | |
| TGCTATAAGCTGCAAATTGA+AGG | - | chr1.3:50489498-50489517 | None:intergenic | 35.0% | |
| TGCTATTGCTGTATCTTTCA+TGG | + | chr1.3:50494369-50494388 | MS.gene036137:intron | 35.0% | |
| TTACTTGATGCTGATGTGTA+TGG | + | chr1.3:50490513-50490532 | MS.gene036137:CDS | 35.0% | |
| TTAGCTATCTAGTGACGATA+TGG | + | chr1.3:50492977-50492996 | MS.gene036137:intron | 35.0% | |
| TTGAAGCAAGCAATTGAACA+CGG | + | chr1.3:50494002-50494021 | MS.gene036137:intron | 35.0% | |
| TTGATCCCGTAACTATCAAT+GGG | - | chr1.3:50491538-50491557 | None:intergenic | 35.0% | |
| TTGCTTGCTTCAATAGAGTT+CGG | - | chr1.3:50493995-50494014 | None:intergenic | 35.0% | |
| TTTACCAGAAGCAATAGCTA+TGG | - | chr1.3:50489437-50489456 | None:intergenic | 35.0% | |
| ! | AAATGGCAATGCTCTGAATA+AGG | + | chr1.3:50491182-50491201 | MS.gene036137:intron | 35.0% |
| ! | ATCAGGAGATTGCATTTTGT+CGG | + | chr1.3:50493042-50493061 | MS.gene036137:intron | 35.0% |
| ! | CAACTGTCCTTACAGATTTT+GGG | + | chr1.3:50493794-50493813 | MS.gene036137:intron | 35.0% |
| ! | CTCCTCTTCTAGTTATGTAT+TGG | - | chr1.3:50491254-50491273 | None:intergenic | 35.0% |
| ! | TCAGTGTTATTGATTGCAGA+TGG | - | chr1.3:50492343-50492362 | None:intergenic | 35.0% |
| ! | TGATTCCCATTGATAGTTAC+GGG | + | chr1.3:50491530-50491549 | MS.gene036137:CDS | 35.0% |
| ! | TGCTTTAAATGTCCACATTG+TGG | + | chr1.3:50493836-50493855 | MS.gene036137:CDS | 35.0% |
| ! | TGTTGTTGTTGTATGCCATT+AGG | - | chr1.3:50493176-50493195 | None:intergenic | 35.0% |
| ! | TTTTGTCATGGCTTCTTCTA+TGG | + | chr1.3:50492577-50492596 | MS.gene036137:intron | 35.0% |
| ! | TTTTGTCGGAATCAGAGTTT+AGG | + | chr1.3:50493056-50493075 | MS.gene036137:intron | 35.0% |
| !! | AGTTCTAGTTGGATGCTTTT+TGG | + | chr1.3:50491988-50492007 | MS.gene036137:intron | 35.0% |
| !! | ATTTTCTCGTTTTATTGGCC+TGG | + | chr1.3:50494305-50494324 | MS.gene036137:intron | 35.0% |
| !! | CCAAGAACAAAAGTTCTAGA+AGG | - | chr1.3:50491709-50491728 | None:intergenic | 35.0% |
| !! | GTTCTAGTTGGATGCTTTTT+GGG | + | chr1.3:50491989-50492008 | MS.gene036137:intron | 35.0% |
| !! | TCTGTAGTTTCTAGAGCATA+TGG | + | chr1.3:50494659-50494678 | MS.gene036137:CDS | 35.0% |
| !! | TGAGAAGCATTCATCTTCAA+TGG | + | chr1.3:50490891-50490910 | MS.gene036137:intron | 35.0% |
| !! | TTATCGATTCAAGATACCAC+TGG | + | chr1.3:50494577-50494596 | MS.gene036137:intron | 35.0% |
| !! | TTCTAGTTGGATGCTTTTTG+GGG | + | chr1.3:50491990-50492009 | MS.gene036137:intron | 35.0% |
| !!! | CATCCACTTCATTGGTTTTT+TGG | + | chr1.3:50491216-50491235 | MS.gene036137:intron | 35.0% |
| !!! | CATTGGTTTTTTGGATTGGA+CGG | + | chr1.3:50491225-50491244 | MS.gene036137:intron | 35.0% |
| !!! | CCTTCTAGAACTTTTGTTCT+TGG | + | chr1.3:50491706-50491725 | MS.gene036137:intron | 35.0% |
| AACCAACTTAATGAGGTCAG+AGG | - | chr1.3:50493003-50493022 | None:intergenic | 40.0% | |
| AACTGCAATGGAAGATGGAA+AGG | - | chr1.3:50491468-50491487 | None:intergenic | 40.0% | |
| AAGCTACCCTGAAGAACTTA+TGG | + | chr1.3:50490275-50490294 | MS.gene036137:intron | 40.0% | |
| AAGCTCTTGAGAAAATGACG+AGG | + | chr1.3:50491839-50491858 | MS.gene036137:CDS | 40.0% | |
| AAGTAAAGGTCCAAGCTGTT+TGG | - | chr1.3:50492051-50492070 | None:intergenic | 40.0% | |
| AATCCCAGTTCTGCTTAATC+AGG | + | chr1.3:50493025-50493044 | MS.gene036137:intron | 40.0% | |
| ACCTAGCACAACCTTCTTTA+TGG | - | chr1.3:50492135-50492154 | None:intergenic | 40.0% | |
| AGAAACTACAGAATCAGGTG+CGG | - | chr1.3:50494651-50494670 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAAATGACGA+GGG | + | chr1.3:50491840-50491859 | MS.gene036137:CDS | 40.0% | |
| AGTGAAAAGGAGACCAATCA+AGG | - | chr1.3:50491651-50491670 | None:intergenic | 40.0% | |
| AGTGTTGTCAAATATCGGCA+TGG | + | chr1.3:50492191-50492210 | MS.gene036137:intron | 40.0% | |
| ATCTCCTGATTAAGCAGAAC+TGG | - | chr1.3:50493032-50493051 | None:intergenic | 40.0% | |
| ATTCAAGATACCACTGGAAG+TGG | + | chr1.3:50494583-50494602 | MS.gene036137:intron | 40.0% | |
| ATTCCGGTAAAATGCTCACT+TGG | + | chr1.3:50492683-50492702 | MS.gene036137:intron | 40.0% | |
| CAAAACTTAGCCAAACAGCT+TGG | + | chr1.3:50492038-50492057 | MS.gene036137:intron | 40.0% | |
| CAAGTAACCCAACCTTCAAT+TGG | - | chr1.3:50490500-50490519 | None:intergenic | 40.0% | |
| CCAAAATCTGTAAGGACAGT+TGG | - | chr1.3:50493796-50493815 | None:intergenic | 40.0% | |
| CCTAGCACAACCTTCTTTAT+GGG | - | chr1.3:50492134-50492153 | None:intergenic | 40.0% | |
| CTATCTTCCCGATTCCTAAA+TGG | - | chr1.3:50491970-50491989 | None:intergenic | 40.0% | |
| CTTGATCCCGTAACTATCAA+TGG | - | chr1.3:50491539-50491558 | None:intergenic | 40.0% | |
| GATACCATAGCTATTGCTTC+TGG | + | chr1.3:50489430-50489449 | MS.gene036137:CDS | 40.0% | |
| GATATACCTTGAGTGACTTC+AGG | - | chr1.3:50490576-50490595 | None:intergenic | 40.0% | |
| GCATTCATCTTCAATGGCAT+TGG | + | chr1.3:50490897-50490916 | MS.gene036137:intron | 40.0% | |
| GGAACTTGTGTGTCCAATAT+AGG | + | chr1.3:50493647-50493666 | MS.gene036137:intron | 40.0% | |
| GGGATCAAGTGTATGTCAAT+AGG | + | chr1.3:50491550-50491569 | MS.gene036137:CDS | 40.0% | |
| GTGAAAAGGAGACCAATCAA+GGG | - | chr1.3:50491650-50491669 | None:intergenic | 40.0% | |
| TAAATAATGCCAGGGGAAGA+GGG | + | chr1.3:50494113-50494132 | MS.gene036137:intron | 40.0% | |
| TAAGATGCACCAAACACTAC+TGG | + | chr1.3:50492793-50492812 | MS.gene036137:intron | 40.0% | |
| TACAGCTACATGCATACCAT+GGG | - | chr1.3:50491616-50491635 | None:intergenic | 40.0% | |
| TATGTCAATAGGGTTCCTTG+TGG | + | chr1.3:50491561-50491580 | MS.gene036137:CDS | 40.0% | |
| TCTCAGAATCTGCAACTATC+AGG | + | chr1.3:50491937-50491956 | MS.gene036137:CDS | 40.0% | |
| TCTCCTGATTAAGCAGAACT+GGG | - | chr1.3:50493031-50493050 | None:intergenic | 40.0% | |
| TGTTGTCGGAATCAGAGTTT+AGG | + | chr1.3:50493126-50493145 | MS.gene036137:intron | 40.0% | |
| TTACAGCTACATGCATACCA+TGG | - | chr1.3:50491617-50491636 | None:intergenic | 40.0% | |
| TTGCATTAGACATCACCAAC+AGG | - | chr1.3:50492021-50492040 | None:intergenic | 40.0% | |
| TTTCATTGTGATCAGTGGCT+AGG | + | chr1.3:50489361-50489380 | MS.gene036137:intron | 40.0% | |
| ! | AAGCCAAGTGAGCATTTTAC+CGG | - | chr1.3:50492689-50492708 | None:intergenic | 40.0% |
| ! | ACTGATAAGCTAGCTTGTAG+CGG | + | chr1.3:50489747-50489766 | MS.gene036137:intron | 40.0% |
| ! | CAATGAGTTGGATCCAAACA+TGG | - | chr1.3:50493284-50493303 | None:intergenic | 40.0% |
| ! | CCAACTGTCCTTACAGATTT+TGG | + | chr1.3:50493793-50493812 | MS.gene036137:intron | 40.0% |
| ! | GTACTGGTACAGACACAATA+TGG | + | chr1.3:50490616-50490635 | MS.gene036137:intron | 40.0% |
| ! | GTGTCGATGTTCATCATGAT+AGG | - | chr1.3:50490549-50490568 | None:intergenic | 40.0% |
| ! | GTGTTATTGATTGCAGATGG+TGG | - | chr1.3:50492340-50492359 | None:intergenic | 40.0% |
| ! | TGCATTAATGGATGCGAGAA+GGG | + | chr1.3:50492634-50492653 | MS.gene036137:CDS | 40.0% |
| ! | TGTCAGTTTCGTAAGAGTGT+CGG | - | chr1.3:50490720-50490739 | None:intergenic | 40.0% |
| ! | TTGCATTAATGGATGCGAGA+AGG | + | chr1.3:50492633-50492652 | MS.gene036137:CDS | 40.0% |
| !! | ATCGGGAAGATAGTTCTAGT+TGG | + | chr1.3:50491977-50491996 | MS.gene036137:intron | 40.0% |
| !! | GCTCTAGAAACTACAGAATC+AGG | - | chr1.3:50494656-50494675 | None:intergenic | 40.0% |
| !! | TCAATTAGAGTATCGCCTCA+TGG | + | chr1.3:50492859-50492878 | MS.gene036137:intron | 40.0% |
| !! | TCTAGTTGGATGCTTTTTGG+GGG | + | chr1.3:50491991-50492010 | MS.gene036137:intron | 40.0% |
| !!! | ATCACACATGTCGGTTTTGT+AGG | + | chr1.3:50490787-50490806 | MS.gene036137:intron | 40.0% |
| !!! | GGGATTAAATTTTTTGGGCG+AGG | + | chr1.3:50493913-50493932 | MS.gene036137:CDS | 40.0% |
| AAATGACGAGGGGAGTTAAC+TGG | + | chr1.3:50491851-50491870 | MS.gene036137:CDS | 45.0% | |
| AAATGTCTCAGTCTCACCCT+CGG | - | chr1.3:50489274-50489293 | None:intergenic | 45.0% | |
| AACAGCACAACCTCTATTCC+TGG | + | chr1.3:50494500-50494519 | MS.gene036137:intron | 45.0% | |
| AATGACGAGGGGAGTTAACT+GGG | + | chr1.3:50491852-50491871 | MS.gene036137:CDS | 45.0% | |
| ACAAAGCCTGAAGTCACTCA+AGG | + | chr1.3:50490567-50490586 | MS.gene036137:CDS | 45.0% | |
| ACAGCTACATGCATACCATG+GGG | - | chr1.3:50491615-50491634 | None:intergenic | 45.0% | |
| ACGACGCCATCCTTCAAAAT+TGG | - | chr1.3:50492265-50492284 | None:intergenic | 45.0% | |
| ATCAGGGAAGCTTGTGATCA+AGG | + | chr1.3:50494608-50494627 | MS.gene036137:CDS | 45.0% | |
| CATAGCACAGCCACTGAAAT+GGG | + | chr1.3:50493893-50493912 | MS.gene036137:CDS | 45.0% | |
| CCATCCTTCAAAATTGGCCA+TGG | - | chr1.3:50492259-50492278 | None:intergenic | 45.0% | |
| CCCATAAAGAAGGTTGTGCT+AGG | + | chr1.3:50492131-50492150 | MS.gene036137:intron | 45.0% | |
| CTAAATAATGCCAGGGGAAG+AGG | + | chr1.3:50494112-50494131 | MS.gene036137:intron | 45.0% | |
| GCATGAACTGCAATGGAAGA+TGG | - | chr1.3:50491473-50491492 | None:intergenic | 45.0% | |
| GCTATTGCTTCTGGTAAAGG+CGG | + | chr1.3:50489439-50489458 | MS.gene036137:CDS | 45.0% | |
| GCTCTTGAGAAAATGACGAG+GGG | + | chr1.3:50491841-50491860 | MS.gene036137:CDS | 45.0% | |
| GTACAGACACAATATGGGCA+TGG | + | chr1.3:50490622-50490641 | MS.gene036137:intron | 45.0% | |
| GTCATGGCTTCTTCTATGGT+AGG | + | chr1.3:50492581-50492600 | MS.gene036137:intron | 45.0% | |
| GTTGTCAAATATCGGCATGG+CGG | + | chr1.3:50492194-50492213 | MS.gene036137:intron | 45.0% | |
| TATGAAGGTTCGCCACAATG+TGG | - | chr1.3:50493851-50493870 | None:intergenic | 45.0% | |
| TCAGGGAAGCTTGTGATCAA+GGG | + | chr1.3:50494609-50494628 | MS.gene036137:CDS | 45.0% | |
| TCATAGCACAGCCACTGAAA+TGG | + | chr1.3:50493892-50493911 | MS.gene036137:CDS | 45.0% | |
| TCCTTCAAAATTGGCCATGG+TGG | - | chr1.3:50492256-50492275 | None:intergenic | 45.0% | |
| TCTACCACCACAATCTGTCA+TGG | - | chr1.3:50492222-50492241 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.3:50493215-50493234 | MS.gene036137:intron | 45.0% |
| ! | ACCACCATGGCCAATTTTGA+AGG | + | chr1.3:50492252-50492271 | MS.gene036137:intron | 45.0% |
| ! | AGTTCCACAGCATTTGAGAC+CGG | - | chr1.3:50493392-50493411 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.3:50493214-50493233 | MS.gene036137:intron | 45.0% |
| ! | GCATTAATGGATGCGAGAAG+GGG | + | chr1.3:50492635-50492654 | MS.gene036137:CDS | 45.0% |
| !! | CCATGGCCAATTTTGAAGGA+TGG | + | chr1.3:50492256-50492275 | MS.gene036137:intron | 45.0% |
| !! | TAAGAGTGTCGGACATCAAC+AGG | - | chr1.3:50490709-50490728 | None:intergenic | 45.0% |
| !! | TGTAGGAGTGTTGGAAACTC+TGG | + | chr1.3:50490804-50490823 | MS.gene036137:intron | 45.0% |
| !! | TTCTCGTTTTATTGGCCTGG+TGG | + | chr1.3:50494308-50494327 | MS.gene036137:intron | 45.0% |
| !! | TTGATTGCAGATGGTGGACA+TGG | - | chr1.3:50492334-50492353 | None:intergenic | 45.0% |
| !!! | TGTCGGTTTTGTAGGAGTGT+TGG | + | chr1.3:50490795-50490814 | MS.gene036137:intron | 45.0% |
| AACTGCTTGTGTCTACCACC+AGG | - | chr1.3:50494326-50494345 | None:intergenic | 50.0% | |
| ACCACTGGAAGTGGAGATCA+GGG | + | chr1.3:50494592-50494611 | MS.gene036137:CDS | 50.0% | |
| AGTATCGCCTCATGGTCATG+GGG | + | chr1.3:50492867-50492886 | MS.gene036137:intron | 50.0% | |
| ATAGATATGCCTCCTGGCAC+TGG | + | chr1.3:50491895-50491914 | MS.gene036137:CDS | 50.0% | |
| ATGACGAGGGGAGTTAACTG+GGG | + | chr1.3:50491853-50491872 | MS.gene036137:CDS | 50.0% | |
| ATTTGGACATCACCAGTGCC+AGG | - | chr1.3:50491910-50491929 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.3:50493216-50493235 | None:intergenic | 50.0% | |
| CTGGTGATAGATATGCCTCC+TGG | + | chr1.3:50491889-50491908 | MS.gene036137:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1.3:50493219-50493238 | MS.gene036137:intron | 50.0% | |
| GATGAATCCCCATGACCATG+AGG | - | chr1.3:50492877-50492896 | None:intergenic | 50.0% | |
| GGCCTCTGACCTCATTAAGT+TGG | + | chr1.3:50492998-50493017 | MS.gene036137:intron | 50.0% | |
| GGTCTCAAATGCTGTGGAAC+TGG | + | chr1.3:50493391-50493410 | MS.gene036137:intron | 50.0% | |
| GTCGGCAAATCAACAACTGC+TGG | + | chr1.3:50489463-50489482 | MS.gene036137:CDS | 50.0% | |
| TACCACTGGAAGTGGAGATC+AGG | + | chr1.3:50494591-50494610 | MS.gene036137:CDS | 50.0% | |
| TGTCGGACATCAACAGGTGT+TGG | - | chr1.3:50490703-50490722 | None:intergenic | 50.0% | |
| TTTGAAGGATGGCGTCGTCA+TGG | + | chr1.3:50492267-50492286 | MS.gene036137:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.3:50493213-50493232 | MS.gene036137:intron | 50.0% |
| ! | GAGTATCGCCTCATGGTCAT+GGG | + | chr1.3:50492866-50492885 | MS.gene036137:intron | 50.0% |
| ! | GCGAAGCATCTTCGCATTGA+TGG | + | chr1.3:50489400-50489419 | MS.gene036137:CDS | 50.0% |
| ! | GTTCCACAGCATTTGAGACC+GGG | - | chr1.3:50493391-50493410 | None:intergenic | 50.0% |
| !! | AGAGTATCGCCTCATGGTCA+TGG | + | chr1.3:50492865-50492884 | MS.gene036137:intron | 50.0% |
| !! | ATTGCAGATGGTGGACATGG+TGG | - | chr1.3:50492331-50492350 | None:intergenic | 50.0% |
| ACACCCGGTCTCAAATGCTG+TGG | + | chr1.3:50493385-50493404 | MS.gene036137:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1.3:50493227-50493246 | MS.gene036137:intron | 55.0% | |
| AGAAGAATGCCCCGATCGTC+TGG | + | chr1.3:50491584-50491603 | MS.gene036137:CDS | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1.3:50493228-50493247 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.3:50493221-50493240 | None:intergenic | 55.0% | |
| CTGGGGGAACCTTGACATTC+TGG | + | chr1.3:50491870-50491889 | MS.gene036137:CDS | 55.0% | |
| GACATTGTACCCTCTTCCCC+TGG | - | chr1.3:50494125-50494144 | None:intergenic | 55.0% | |
| GCTTCTGGTAAAGGCGGTGT+CGG | + | chr1.3:50489445-50489464 | MS.gene036137:CDS | 55.0% | |
| TCAGGTGCGGCCAACACTAT+CGG | - | chr1.3:50494638-50494657 | None:intergenic | 55.0% | |
| TCCCTGATCTCCACTTCCAG+TGG | - | chr1.3:50494596-50494615 | None:intergenic | 55.0% | |
| TGACGAGGGGAGTTAACTGG+GGG | + | chr1.3:50491854-50491873 | MS.gene036137:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1.3:50493227-50493246 | None:intergenic | 55.0% | |
| ! | GGTGCCATGACAGATTGTGG+TGG | + | chr1.3:50492215-50492234 | MS.gene036137:intron | 55.0% |
| ! | TCGGGGCATTCTTCTCCACA+AGG | - | chr1.3:50491579-50491598 | None:intergenic | 55.0% |
| !! | CTTTTTGGGGGATCGCCTGT+TGG | + | chr1.3:50492003-50492022 | MS.gene036137:intron | 55.0% |
| !! | TCAAGGGCACCCGATAGTGT+TGG | + | chr1.3:50494625-50494644 | MS.gene036137:CDS | 55.0% |
| AATGCCCCGATCGTCTGGAG+AGG | + | chr1.3:50491589-50491608 | MS.gene036137:CDS | 60.0% | |
| ATGGGGCCTCTCCAGACGAT+CGG | - | chr1.3:50491598-50491617 | None:intergenic | 60.0% | |
| CAGGTGCGGCCAACACTATC+GGG | - | chr1.3:50494637-50494656 | None:intergenic | 60.0% | |
| GGCGTCGTCATGGCGTGTTA+TGG | + | chr1.3:50492277-50492296 | MS.gene036137:intron | 60.0% | |
| TGGACATCACCAGTGCCAGG+AGG | - | chr1.3:50491907-50491926 | None:intergenic | 60.0% | |
| !! | GGCGGTGCCATGACAGATTG+TGG | + | chr1.3:50492212-50492231 | MS.gene036137:intron | 60.0% |
| GATCGTCTGGAGAGGCCCCA+TGG | + | chr1.3:50491597-50491616 | MS.gene036137:CDS | 65.0% | |
| TGGGGCCTCTCCAGACGATC+GGG | - | chr1.3:50491597-50491616 | None:intergenic | 65.0% | |
| GGGGCCTCTCCAGACGATCG+GGG | - | chr1.3:50491596-50491615 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 50489265 | 50494748 | 50489265 | ID=MS.gene036137 |
| chr1.3 | mRNA | 50489265 | 50494748 | 50489265 | ID=MS.gene036137.t1;Parent=MS.gene036137 |
| chr1.3 | exon | 50489265 | 50489276 | 50489265 | ID=MS.gene036137.t1.exon1;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50489265 | 50489276 | 50489265 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50489376 | 50489484 | 50489376 | ID=MS.gene036137.t1.exon2;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50489376 | 50489484 | 50489376 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50490466 | 50490588 | 50490466 | ID=MS.gene036137.t1.exon3;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50490466 | 50490588 | 50490466 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50491521 | 50491618 | 50491521 | ID=MS.gene036137.t1.exon4;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50491521 | 50491618 | 50491521 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50491832 | 50491958 | 50491832 | ID=MS.gene036137.t1.exon5;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50491832 | 50491958 | 50491832 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50492603 | 50492688 | 50492603 | ID=MS.gene036137.t1.exon6;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50492603 | 50492688 | 50492603 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50493809 | 50493934 | 50493809 | ID=MS.gene036137.t1.exon7;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50493809 | 50493934 | 50493809 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| chr1.3 | exon | 50494590 | 50494748 | 50494590 | ID=MS.gene036137.t1.exon8;Parent=MS.gene036137.t1 |
| chr1.3 | CDS | 50494590 | 50494748 | 50494590 | ID=cds.MS.gene036137.t1;Parent=MS.gene036137.t1 |
| Gene Sequence |
| Protein sequence |
