Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49327.t1 | XP_013468554.1 | 99.3 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 5.90E-156 | 560.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49327.t1 | Q9CWD8 | 57.5 | 261 | 110 | 1 | 10 | 269 | 55 | 315 | 2.3e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49327.t1 | A0A072VLT3 | 99.3 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 4.3e-156 | 560.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057208 | MS.gene49327 | -0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene49327 | 0.80509 | 1.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33010 | MS.gene49327 | PPI |
| MS.gene49327 | MS.gene57256 | PPI |
| MS.gene24397 | MS.gene49327 | PPI |
| MS.gene49327 | MS.gene051597 | PPI |
| MS.gene00413 | MS.gene49327 | PPI |
| MS.gene49327 | MS.gene67121 | PPI |
| MS.gene49327 | MS.gene016205 | PPI |
| MS.gene49327 | MS.gene044033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49327.t1 | MTR_1g070360 | 99.283 | 279 | 2 | 0 | 1 | 279 | 1 | 279 | 0.0 | 570 |
| MS.gene49327.t1 | MTR_6g086600 | 39.286 | 252 | 140 | 5 | 21 | 267 | 167 | 410 | 1.11e-54 | 184 |
| MS.gene49327.t1 | MTR_6g086600 | 38.824 | 255 | 143 | 5 | 18 | 267 | 173 | 419 | 1.13e-54 | 185 |
| MS.gene49327.t1 | MTR_1g016110 | 34.228 | 298 | 144 | 10 | 17 | 270 | 7 | 296 | 7.19e-37 | 133 |
| MS.gene49327.t1 | MTR_1g019620 | 34.228 | 298 | 144 | 10 | 17 | 270 | 54 | 343 | 1.09e-36 | 134 |
| MS.gene49327.t1 | MTR_1g016110 | 34.228 | 298 | 144 | 10 | 17 | 270 | 54 | 343 | 4.96e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49327.t1 | AT4G19540 | 68.702 | 262 | 82 | 0 | 15 | 276 | 36 | 297 | 7.74e-138 | 391 |
| MS.gene49327.t1 | AT3G24430 | 40.964 | 249 | 140 | 5 | 21 | 267 | 175 | 418 | 4.30e-56 | 189 |
| MS.gene49327.t1 | AT5G50960 | 34.237 | 295 | 143 | 9 | 17 | 265 | 54 | 343 | 3.23e-42 | 148 |
Find 81 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGATGTTGCATTAA+TGG | 0.159802 | 1.1:+52808672 | MS.gene49327:CDS |
| GGCGAACCTTCATATATATT+TGG | 0.186512 | 1.1:+52809915 | MS.gene49327:CDS |
| GATTCTGAGACATAGATATT+TGG | 0.283473 | 1.1:-52807974 | None:intergenic |
| AAATGACGAGGGGAGTTAAC+TGG | 0.330730 | 1.1:+52807901 | MS.gene49327:CDS |
| GTTCAATAAAGTTGATATTC+CGG | 0.350862 | 1.1:+52808717 | MS.gene49327:CDS |
| GATACCATAGCTATTGCTTC+TGG | 0.358686 | 1.1:+52805492 | MS.gene49327:CDS |
| GCGAAGCATCTTCGCATTGA+TGG | 0.362197 | 1.1:+52805462 | MS.gene49327:CDS |
| GGGATCAAGTGTATGTCAAT+AGG | 0.367929 | 1.1:+52807600 | MS.gene49327:CDS |
| TCTCAGAATCTGCAACTATC+AGG | 0.373762 | 1.1:+52807987 | MS.gene49327:CDS |
| TCTGTAGTTTCTAGAGCATA+TGG | 0.381576 | 1.1:+52810718 | MS.gene49327:CDS |
| TGGGGCCTCTCCAGACGATC+GGG | 0.385203 | 1.1:-52807644 | None:intergenic |
| TGATTCCCATTGATAGTTAC+GGG | 0.385809 | 1.1:+52807580 | MS.gene49327:CDS |
| AGAAGAATGCCCCGATCGTC+TGG | 0.396775 | 1.1:+52807634 | MS.gene49327:CDS |
| GTGTCGATGTTCATCATGAT+AGG | 0.396838 | 1.1:-52806609 | None:intergenic |
| TACCACTGGAAGTGGAGATC+AGG | 0.399284 | 1.1:+52810650 | MS.gene49327:CDS |
| GATATACCTTGAGTGACTTC+AGG | 0.399695 | 1.1:-52806636 | None:intergenic |
| GCTCTAGAAACTACAGAATC+AGG | 0.405926 | 1.1:-52810712 | None:intergenic |
| GTAAGTTCCAATTGAAGGTT+GGG | 0.411148 | 1.1:+52806553 | MS.gene49327:CDS |
| TGCAAGTAAGTTCCAATTGA+AGG | 0.420623 | 1.1:+52806548 | MS.gene49327:CDS |
| CAAGTAACCCAACCTTCAAT+TGG | 0.422756 | 1.1:-52806560 | None:intergenic |
| TCATAGCACAGCCACTGAAA+TGG | 0.425764 | 1.1:+52809950 | MS.gene49327:CDS |
| ATGATTCCCATTGATAGTTA+CGG | 0.432104 | 1.1:+52807579 | MS.gene49327:CDS |
| GTTCATCATGATAGGAATGT+TGG | 0.432777 | 1.1:-52806601 | None:intergenic |
| CTTGATCCCGTAACTATCAA+TGG | 0.438569 | 1.1:-52807586 | None:intergenic |
| CATAGCACAGCCACTGAAAT+GGG | 0.443169 | 1.1:+52809951 | MS.gene49327:CDS |
| ATCAGGGAAGCTTGTGATCA+AGG | 0.450807 | 1.1:+52810667 | MS.gene49327:CDS |
| GGATCAAGTGTATGTCAATA+GGG | 0.458082 | 1.1:+52807601 | MS.gene49327:CDS |
| TTACTTGATGCTGATGTGTA+TGG | 0.464843 | 1.1:+52806576 | MS.gene49327:CDS |
| ATATGGAAATATAGCTGAAA+AGG | 0.465410 | 1.1:+52810735 | MS.gene49327:CDS |
| ATAGCTATTGCTTCTGGTAA+AGG | 0.466248 | 1.1:+52805498 | MS.gene49327:CDS |
| ACATTTCATAGTAAAATCTC+TGG | 0.468648 | 1.1:-52810790 | None:intergenic |
| TCAGGTGCGGCCAACACTAT+CGG | 0.472607 | 1.1:-52810694 | None:intergenic |
| TTCATCATGATAGGAATGTT+GGG | 0.479590 | 1.1:-52806600 | None:intergenic |
| CCTTTACCAAATATATATGA+AGG | 0.479977 | 1.1:-52809921 | None:intergenic |
| CAGGTGCGGCCAACACTATC+GGG | 0.485473 | 1.1:-52810693 | None:intergenic |
| TGCATTAATGGATGCGAGAA+GGG | 0.486805 | 1.1:+52808684 | MS.gene49327:CDS |
| AATGACGAGGGGAGTTAACT+GGG | 0.488841 | 1.1:+52807902 | MS.gene49327:CDS |
| ATAGATATGCCTCCTGGCAC+TGG | 0.493130 | 1.1:+52807945 | MS.gene49327:CDS |
| AGTAAGTTCCAATTGAAGGT+TGG | 0.499750 | 1.1:+52806552 | MS.gene49327:CDS |
| ATGGGGCCTCTCCAGACGAT+CGG | 0.500251 | 1.1:-52807645 | None:intergenic |
| ATTCAAGATACCACTGGAAG+TGG | 0.501090 | 1.1:+52810642 | MS.gene49327:intron |
| CCTTCATATATATTTGGTAA+AGG | 0.504163 | 1.1:+52809921 | MS.gene49327:CDS |
| CATATATATTTGGTAAAGGA+GGG | 0.512882 | 1.1:+52809925 | MS.gene49327:CDS |
| CATCAAAGTTGATGAGGCCG+AGG | 0.513994 | 1.1:+52805316 | None:intergenic |
| TTGATCCCGTAACTATCAAT+GGG | 0.516228 | 1.1:-52807585 | None:intergenic |
| TCCATTAATGCAACATCTTG+AGG | 0.518038 | 1.1:-52808673 | None:intergenic |
| TCATATATATTTGGTAAAGG+AGG | 0.524591 | 1.1:+52809924 | MS.gene49327:CDS |
| CTGGTGATAGATATGCCTCC+TGG | 0.527506 | 1.1:+52807939 | MS.gene49327:CDS |
| GTCGGCAAATCAACAACTGC+TGG | 0.546887 | 1.1:+52805525 | MS.gene49327:CDS |
| AAAATTTAATCCCATTTCAG+TGG | 0.548951 | 1.1:-52809961 | None:intergenic |
| TCAGGGAAGCTTGTGATCAA+GGG | 0.553420 | 1.1:+52810668 | MS.gene49327:CDS |
| GATCGTCTGGAGAGGCCCCA+TGG | 0.554959 | 1.1:+52807647 | MS.gene49327:CDS |
| ATTTGGACATCACCAGTGCC+AGG | 0.555591 | 1.1:-52807957 | None:intergenic |
| TTTCATTGTGATCAGTGGCT+AGG | 0.565361 | 1.1:+52805423 | MS.gene49327:intron |
| GCTTCTGGTAAAGGCGGTGT+CGG | 0.565622 | 1.1:+52805507 | MS.gene49327:CDS |
| ACCACTGGAAGTGGAGATCA+GGG | 0.566063 | 1.1:+52810651 | MS.gene49327:CDS |
| TGCTTTAAATGTCCACATTG+TGG | 0.569694 | 1.1:+52809894 | MS.gene49327:CDS |
| TTATCGATTCAAGATACCAC+TGG | 0.571247 | 1.1:+52810636 | MS.gene49327:intron |
| TTGCATTAATGGATGCGAGA+AGG | 0.572149 | 1.1:+52808683 | MS.gene49327:CDS |
| ATATATATTTGGTAAAGGAG+GGG | 0.592261 | 1.1:+52809926 | MS.gene49327:CDS |
| GCATTAATGGATGCGAGAAG+GGG | 0.600484 | 1.1:+52808685 | MS.gene49327:CDS |
| TCCCTGATCTCCACTTCCAG+TGG | 0.604175 | 1.1:-52810652 | None:intergenic |
| TTTACCAGAAGCAATAGCTA+TGG | 0.617990 | 1.1:-52805496 | None:intergenic |
| AAAGGTTGTTCAGAAACTCA+AGG | 0.620310 | 1.1:+52810753 | MS.gene49327:CDS |
| GGGGCCTCTCCAGACGATCG+GGG | 0.629673 | 1.1:-52807643 | None:intergenic |
| TCAAGGGCACCCGATAGTGT+TGG | 0.640121 | 1.1:+52810684 | MS.gene49327:CDS |
| AATGCCCCGATCGTCTGGAG+AGG | 0.641120 | 1.1:+52807639 | MS.gene49327:CDS |
| AGCTCTTGAGAAAATGACGA+GGG | 0.641120 | 1.1:+52807890 | MS.gene49327:CDS |
| TATCTATCACCAGAATGTCA+AGG | 0.659018 | 1.1:-52807929 | None:intergenic |
| ATCAAAGTTGATGAGGCCGA+GGG | 0.661654 | 1.1:+52805317 | None:intergenic |
| GCTATTGCTTCTGGTAAAGG+CGG | 0.674617 | 1.1:+52805501 | MS.gene49327:CDS |
| ACAAAGCCTGAAGTCACTCA+AGG | 0.675264 | 1.1:+52806630 | MS.gene49327:CDS |
| TATGAAGGTTCGCCACAATG+TGG | 0.675582 | 1.1:-52809906 | None:intergenic |
| ATGACGAGGGGAGTTAACTG+GGG | 0.676508 | 1.1:+52807903 | MS.gene49327:CDS |
| TCGGGGCATTCTTCTCCACA+AGG | 0.698186 | 1.1:-52807626 | None:intergenic |
| AGAAACTACAGAATCAGGTG+CGG | 0.700617 | 1.1:-52810707 | None:intergenic |
| AAGCTCTTGAGAAAATGACG+AGG | 0.702011 | 1.1:+52807889 | MS.gene49327:CDS |
| GCTCTTGAGAAAATGACGAG+GGG | 0.708702 | 1.1:+52807891 | MS.gene49327:CDS |
| TATGTCAATAGGGTTCCTTG+TGG | 0.727496 | 1.1:+52807611 | MS.gene49327:CDS |
| TGACGAGGGGAGTTAACTGG+GGG | 0.736165 | 1.1:+52807904 | MS.gene49327:CDS |
| TGGACATCACCAGTGCCAGG+AGG | 0.736378 | 1.1:-52807954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTAAGAAAGACAT+AGG | + | chr1.1:52810230-52810249 | MS.gene49327:intron | 15.0% |
| !! | AATAGTTAATGAAAATGAAA+AGG | - | chr1.1:52807714-52807733 | None:intergenic | 15.0% |
| !! | TACTCTAATTGAATAATAAT+CGG | - | chr1.1:52808901-52808920 | None:intergenic | 15.0% |
| !! | TATATTTCATTTAGAAGAAA+AGG | - | chr1.1:52810325-52810344 | None:intergenic | 15.0% |
| !!! | AATTATTAAGCTTTGTTTTA+TGG | + | chr1.1:52807485-52807504 | MS.gene49327:intron | 15.0% |
| !!! | ATGTCTTTCTTAATTAATTT+TGG | - | chr1.1:52810230-52810249 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTACTTATTTCA+CGG | + | chr1.1:52809684-52809703 | MS.gene49327:intron | 15.0% |
| !!! | TGTCTTTCTTAATTAATTTT+GGG | - | chr1.1:52810229-52810248 | None:intergenic | 15.0% |
| !!! | TTTATTTGAATTTTTATTGC+TGG | + | chr1.1:52807849-52807868 | MS.gene49327:intron | 15.0% |
| !! | AAAAAAAACTAAATAATGCC+AGG | + | chr1.1:52810161-52810180 | MS.gene49327:intron | 20.0% |
| !! | AAAAAAACTAAATAATGCCA+GGG | + | chr1.1:52810162-52810181 | MS.gene49327:intron | 20.0% |
| !! | AATAAATATGTAAATACACC+TGG | + | chr1.1:52809601-52809620 | MS.gene49327:intron | 20.0% |
| !! | AATATTTCTCTATAATGTAC+TGG | + | chr1.1:52806663-52806682 | MS.gene49327:intron | 20.0% |
| !! | AATGAAAAGTTTAGCAATAT+CGG | + | chr1.1:52810108-52810127 | MS.gene49327:intron | 20.0% |
| !! | ACAAAAATAACCAATGAAAA+AGG | - | chr1.1:52808613-52808632 | None:intergenic | 20.0% |
| !! | ATAACTACAATTTATGAACT+CGG | + | chr1.1:52807384-52807403 | MS.gene49327:intron | 20.0% |
| !! | ATTTACAAAAACTCATAATC+AGG | - | chr1.1:52808774-52808793 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAACTGAA+CGG | - | chr1.1:52810465-52810484 | None:intergenic | 20.0% |
| !! | TAAAACGAGAAAATGATTAT+CGG | - | chr1.1:52810356-52810375 | None:intergenic | 20.0% |
| !! | TAATCAGCAAATATTACATA+TGG | - | chr1.1:52807210-52807229 | None:intergenic | 20.0% |
| !! | TTAAAATCTAGACAAAGTAA+AGG | - | chr1.1:52808115-52808134 | None:intergenic | 20.0% |
| !! | TTATTTCAGTTTATTGTTGT+CGG | + | chr1.1:52809164-52809183 | MS.gene49327:intron | 20.0% |
| !!! | ATTGTTTCTAATTTGAAGTT+AGG | + | chr1.1:52805719-52805738 | MS.gene49327:intron | 20.0% |
| !!! | CGTTCAGTTTTTTTTTTTTT+GGG | + | chr1.1:52810463-52810482 | MS.gene49327:intron | 20.0% |
| !!! | GAAATGGGATTAAATTTTTT+GGG | + | chr1.1:52809966-52809985 | MS.gene49327:CDS | 20.0% |
| !!! | GATTATGAGTTTTTGTAAAT+TGG | + | chr1.1:52808774-52808793 | MS.gene49327:intron | 20.0% |
| !!! | TAATCATTTTCTCGTTTTAT+TGG | + | chr1.1:52810357-52810376 | MS.gene49327:intron | 20.0% |
| !!! | TATTTGCTGATTATCATAAA+TGG | + | chr1.1:52807217-52807236 | MS.gene49327:intron | 20.0% |
| !!! | TGAAATGGGATTAAATTTTT+TGG | + | chr1.1:52809965-52809984 | MS.gene49327:CDS | 20.0% |
| !!! | TGCTTCTATTATATGTTTTA+AGG | + | chr1.1:52809660-52809679 | MS.gene49327:intron | 20.0% |
| !!! | TTTTTTCAATTAAGATTGCA+GGG | + | chr1.1:52805981-52806000 | MS.gene49327:intron | 20.0% |
| !!! | TTTTTTTCAATTAAGATTGC+AGG | + | chr1.1:52805980-52805999 | MS.gene49327:intron | 20.0% |
| ! | AAAAAACTAAATAATGCCAG+GGG | + | chr1.1:52810163-52810182 | MS.gene49327:intron | 25.0% |
| ! | AAAATTTAATCCCATTTCAG+TGG | - | chr1.1:52809964-52809983 | None:intergenic | 25.0% |
| ! | AATAAATATGTAAACACACC+CGG | + | chr1.1:52809428-52809447 | MS.gene49327:intron | 25.0% |
| ! | AATGAAAAAGGTTAAGTGAA+TGG | - | chr1.1:52808601-52808620 | None:intergenic | 25.0% |
| ! | ATAAACTGAAATAAGCCATT+AGG | - | chr1.1:52809158-52809177 | None:intergenic | 25.0% |
| ! | ATATATATTTGGTAAAGGAG+GGG | + | chr1.1:52809926-52809945 | MS.gene49327:CDS | 25.0% |
| ! | ATATGGAAATATAGCTGAAA+AGG | + | chr1.1:52810735-52810754 | MS.gene49327:CDS | 25.0% |
| ! | CAAATAAAAAACAGTAGAAG+TGG | - | chr1.1:52807837-52807856 | None:intergenic | 25.0% |
| ! | CATATATATTTGGTAAAGGA+GGG | + | chr1.1:52809925-52809944 | MS.gene49327:CDS | 25.0% |
| ! | CATGCATTTAAAAATCCTAA+TGG | + | chr1.1:52809140-52809159 | MS.gene49327:intron | 25.0% |
| ! | CATGCATTTAGAAATCTTAA+TGG | + | chr1.1:52809538-52809557 | MS.gene49327:intron | 25.0% |
| ! | CATTAAGATTTCTAAATGCA+TGG | - | chr1.1:52809540-52809559 | None:intergenic | 25.0% |
| ! | CCTTCATATATATTTGGTAA+AGG | + | chr1.1:52809921-52809940 | MS.gene49327:CDS | 25.0% |
| ! | CCTTTACCAAATATATATGA+AGG | - | chr1.1:52809924-52809943 | None:intergenic | 25.0% |
| ! | GGGTTGAACAATAAATTTAA+GGG | - | chr1.1:52806182-52806201 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATAAAATTAG+CGG | + | chr1.1:52805901-52805920 | MS.gene49327:intron | 25.0% |
| ! | TATATCAGCCATTTCTTATT+TGG | + | chr1.1:52809762-52809781 | MS.gene49327:intron | 25.0% |
| ! | TCAAAGGACAATTAGTAATT+TGG | - | chr1.1:52808556-52808575 | None:intergenic | 25.0% |
| ! | TCATATATATTTGGTAAAGG+AGG | + | chr1.1:52809924-52809943 | MS.gene49327:CDS | 25.0% |
| ! | TCTAAATCTAGAAATCCTAA+TGG | + | chr1.1:52809365-52809384 | MS.gene49327:intron | 25.0% |
| ! | TGGGATTTATTGAATATATC+AGG | - | chr1.1:52808165-52808184 | None:intergenic | 25.0% |
| ! | TGTTGCTAAAATTAGAGTTT+AGG | + | chr1.1:52809506-52809525 | MS.gene49327:intron | 25.0% |
| ! | TTATGCGAACAGAAAATTAT+TGG | - | chr1.1:52807545-52807564 | None:intergenic | 25.0% |
| ! | TTATTTCCATAAGTTCTTCA+GGG | - | chr1.1:52806347-52806366 | None:intergenic | 25.0% |
| ! | TTCAATAAATCCCATAAAGA+AGG | + | chr1.1:52808171-52808190 | MS.gene49327:intron | 25.0% |
| !! | ACAATATAAACATTTTGCCT+TGG | - | chr1.1:52808962-52808981 | None:intergenic | 25.0% |
| !! | AGTGATAATGTTAAAGCAAT+AGG | + | chr1.1:52807068-52807087 | MS.gene49327:intron | 25.0% |
| !! | ATTAGGATTTCTAGATTTAG+AGG | - | chr1.1:52809366-52809385 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATAAGTTCTCT+CGG | + | chr1.1:52806384-52806403 | MS.gene49327:intron | 25.0% |
| !! | CATTAGGATTTTTAAATGCA+TGG | - | chr1.1:52809142-52809161 | None:intergenic | 25.0% |
| !! | TCTCAACACATGATATTTTT+AGG | + | chr1.1:52807340-52807359 | MS.gene49327:intron | 25.0% |
| !! | TGGGTTGAACAATAAATTTA+AGG | - | chr1.1:52806183-52806202 | None:intergenic | 25.0% |
| !! | TTTTAAATCATCCACTTCAT+TGG | + | chr1.1:52807257-52807276 | MS.gene49327:intron | 25.0% |
| !! | TTTTATTGCTGGATTATCAT+AGG | + | chr1.1:52807860-52807879 | MS.gene49327:intron | 25.0% |
| !!! | ATTCACTTAACCTTTTTCAT+TGG | + | chr1.1:52808600-52808619 | MS.gene49327:intron | 25.0% |
| !!! | CCGTTCAGTTTTTTTTTTTT+TGG | + | chr1.1:52810462-52810481 | MS.gene49327:intron | 25.0% |
| !!! | GTGCTGTTTTCAATAATTTA+AGG | - | chr1.1:52810547-52810566 | None:intergenic | 25.0% |
| !!! | GTTCAATAAAGTTGATATTC+CGG | + | chr1.1:52808717-52808736 | MS.gene49327:CDS | 25.0% |
| !!! | TTCATTGGTTATTTTTGTCA+TGG | + | chr1.1:52808615-52808634 | MS.gene49327:intron | 25.0% |
| !!! | TTGAAAGTGTTGTCAAATAT+CGG | + | chr1.1:52808236-52808255 | MS.gene49327:intron | 25.0% |
| !!! | TTTTTCAATTAAGATTGCAG+GGG | + | chr1.1:52805982-52806001 | MS.gene49327:intron | 25.0% |
| AAAATTGCTTGAATGTAGAG+TGG | - | chr1.1:52807048-52807067 | None:intergenic | 30.0% | |
| AAAGTGAGAAGAATGTAAAG+TGG | - | chr1.1:52806234-52806253 | None:intergenic | 30.0% | |
| AAATATGTGTCTTACCAAAC+AGG | + | chr1.1:52806156-52806175 | MS.gene49327:intron | 30.0% | |
| AAGACACATATTTGAGCTTA+TGG | - | chr1.1:52806149-52806168 | None:intergenic | 30.0% | |
| AATAAATTTAAGGGCCTGTT+TGG | - | chr1.1:52806173-52806192 | None:intergenic | 30.0% | |
| AATCCAAAAAACCAATGAAG+TGG | - | chr1.1:52807271-52807290 | None:intergenic | 30.0% | |
| AATGTAAAGTGGTTTCTGTT+CGG | - | chr1.1:52806223-52806242 | None:intergenic | 30.0% | |
| ATCCAATACATAACTAGAAG+AGG | + | chr1.1:52807298-52807317 | MS.gene49327:intron | 30.0% | |
| CATGCATTTAGAAATCCTAA+TGG | + | chr1.1:52809210-52809229 | MS.gene49327:intron | 30.0% | |
| CATTAGGATTTCTAAATGCA+TGG | - | chr1.1:52809212-52809231 | None:intergenic | 30.0% | |
| CATTGTACCATTACTACATT+TGG | + | chr1.1:52808995-52809014 | MS.gene49327:intron | 30.0% | |
| CTTATTTCCATAAGTTCTTC+AGG | - | chr1.1:52806348-52806367 | None:intergenic | 30.0% | |
| GAAAATGACAATTACCAAAC+AGG | + | chr1.1:52806089-52806108 | MS.gene49327:intron | 30.0% | |
| GAATGGAAACTTGATAAGAA+AGG | - | chr1.1:52808584-52808603 | None:intergenic | 30.0% | |
| GATAAGAAAGGTCATTTCAA+AGG | - | chr1.1:52808572-52808591 | None:intergenic | 30.0% | |
| GATATAAGCCTATGTTTGAT+AGG | + | chr1.1:52805658-52805677 | MS.gene49327:intron | 30.0% | |
| GGATACATTTACACAAAAGT+GGG | - | chr1.1:52806202-52806221 | None:intergenic | 30.0% | |
| GTAACTAACCATTTAGGAAT+CGG | + | chr1.1:52808009-52808028 | MS.gene49327:intron | 30.0% | |
| GTTCTATCATAAACCATGTT+TGG | + | chr1.1:52809326-52809345 | MS.gene49327:intron | 30.0% | |
| TAACTAACCATTTAGGAATC+GGG | + | chr1.1:52808010-52808029 | MS.gene49327:intron | 30.0% | |
| TATCAGGTAACTAACCATTT+AGG | + | chr1.1:52808003-52808022 | MS.gene49327:intron | 30.0% | |
| TATGATTCCCAAAATCTGTA+AGG | - | chr1.1:52809862-52809881 | None:intergenic | 30.0% | |
| TATTTGAGCTTATGGCTTAT+AGG | - | chr1.1:52806141-52806160 | None:intergenic | 30.0% | |
| TCATTATCAGCAACCTATAT+TGG | - | chr1.1:52809721-52809740 | None:intergenic | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr1.1:52809322-52809341 | None:intergenic | 30.0% | |
| TGTGAACACCAAATAAGAAA+TGG | - | chr1.1:52809773-52809792 | None:intergenic | 30.0% | |
| TTCATCATGATAGGAATGTT+GGG | - | chr1.1:52806603-52806622 | None:intergenic | 30.0% | |
| TTTGCCTTGGAAAAACAATT+GGG | - | chr1.1:52808949-52808968 | None:intergenic | 30.0% | |
| ! | AGCTTAAAATGATGAGCTTT+TGG | + | chr1.1:52808351-52808370 | MS.gene49327:intron | 30.0% |
| ! | ATGATTCCCATTGATAGTTA+CGG | + | chr1.1:52807579-52807598 | MS.gene49327:CDS | 30.0% |
| ! | ATTTCTACATGTGTGCTTTT+AGG | + | chr1.1:52806972-52806991 | MS.gene49327:intron | 30.0% |
| ! | CTTTGTTTGCTAAAGAATAG+CGG | + | chr1.1:52805783-52805802 | MS.gene49327:intron | 30.0% |
| ! | TCAACTAATAAGAGCTTGTT+TGG | - | chr1.1:52806465-52806484 | None:intergenic | 30.0% |
| ! | TTTTGCCTTGGAAAAACAAT+TGG | - | chr1.1:52808950-52808969 | None:intergenic | 30.0% |
| !! | AGATTTTTCAATAACCACCA+TGG | + | chr1.1:52808289-52808308 | MS.gene49327:intron | 30.0% |
| !! | GACTAAATTTTGAGAGATTG+AGG | + | chr1.1:52810278-52810297 | MS.gene49327:intron | 30.0% |
| !! | GATTCTGAGACATAGATATT+TGG | - | chr1.1:52807977-52807996 | None:intergenic | 30.0% |
| !!! | ACTTCATTGGTTTTTTGGAT+TGG | + | chr1.1:52807270-52807289 | MS.gene49327:intron | 30.0% |
| AAAGGTTGTTCAGAAACTCA+AGG | + | chr1.1:52810753-52810772 | MS.gene49327:CDS | 35.0% | |
| AAGCCTATGTTTGATAGGTT+TGG | + | chr1.1:52805663-52805682 | MS.gene49327:intron | 35.0% | |
| AATGAAAAGGAGACCAATCA+AGG | - | chr1.1:52807701-52807720 | None:intergenic | 35.0% | |
| AATGGCTGATATATCAATGC+AGG | - | chr1.1:52809755-52809774 | None:intergenic | 35.0% | |
| AATTTCTGCTTTCCCTTGAT+TGG | + | chr1.1:52807685-52807704 | MS.gene49327:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1.1:52809354-52809373 | None:intergenic | 35.0% | |
| AGTAAGTTCCAATTGAAGGT+TGG | + | chr1.1:52806552-52806571 | MS.gene49327:CDS | 35.0% | |
| ATAGCTATTGCTTCTGGTAA+AGG | + | chr1.1:52805498-52805517 | MS.gene49327:CDS | 35.0% | |
| ATCCATGCCAAATGTAGTAA+TGG | - | chr1.1:52809005-52809024 | None:intergenic | 35.0% | |
| ATGAAAAGGAGACCAATCAA+GGG | - | chr1.1:52807700-52807719 | None:intergenic | 35.0% | |
| ATGACTGAAAAAGACCTGTT+TGG | - | chr1.1:52806106-52806125 | None:intergenic | 35.0% | |
| ATTATTGGCATGAACTGCAA+TGG | - | chr1.1:52807530-52807549 | None:intergenic | 35.0% | |
| CAACCAAACCTATCAAACAT+AGG | - | chr1.1:52805669-52805688 | None:intergenic | 35.0% | |
| CGGATACATTTACACAAAAG+TGG | - | chr1.1:52806203-52806222 | None:intergenic | 35.0% | |
| GATTAACAGACATCAAAGCT+AGG | - | chr1.1:52809823-52809842 | None:intergenic | 35.0% | |
| GCTATAAGCTGCAAATTGAA+GGG | - | chr1.1:52805559-52805578 | None:intergenic | 35.0% | |
| GCTATTGCTGTATCTTTCAT+GGG | + | chr1.1:52810427-52810446 | MS.gene49327:intron | 35.0% | |
| GGATCAAGTGTATGTCAATA+GGG | + | chr1.1:52807601-52807620 | MS.gene49327:CDS | 35.0% | |
| GGATTTCAACCAACTTAATG+AGG | - | chr1.1:52809062-52809081 | None:intergenic | 35.0% | |
| GGCGAACCTTCATATATATT+TGG | + | chr1.1:52809915-52809934 | MS.gene49327:CDS | 35.0% | |
| GTAAGTTCCAATTGAAGGTT+GGG | + | chr1.1:52806553-52806572 | MS.gene49327:CDS | 35.0% | |
| GTTCATCATGATAGGAATGT+TGG | - | chr1.1:52806604-52806623 | None:intergenic | 35.0% | |
| TACCATTACTACATTTGGCA+TGG | + | chr1.1:52809000-52809019 | MS.gene49327:intron | 35.0% | |
| TACTGGTACAGACACAATAT+GGG | + | chr1.1:52806680-52806699 | MS.gene49327:intron | 35.0% | |
| TATCGTTTCATTGTGATCAG+TGG | + | chr1.1:52805418-52805437 | MS.gene49327:intron | 35.0% | |
| TATCTATCACCAGAATGTCA+AGG | - | chr1.1:52807932-52807951 | None:intergenic | 35.0% | |
| TCAAATGTGATCACACATGT+CGG | + | chr1.1:52806841-52806860 | MS.gene49327:intron | 35.0% | |
| TCACTTAATACCAGGAATAG+AGG | - | chr1.1:52810572-52810591 | None:intergenic | 35.0% | |
| TCCATTAATGCAACATCTTG+AGG | - | chr1.1:52808676-52808695 | None:intergenic | 35.0% | |
| TCCTCAAGATGTTGCATTAA+TGG | + | chr1.1:52808672-52808691 | MS.gene49327:CDS | 35.0% | |
| TGAATGAAACCAGTAGTGTT+TGG | - | chr1.1:52808855-52808874 | None:intergenic | 35.0% | |
| TGCAAATCTCACTTAATACC+AGG | - | chr1.1:52810580-52810599 | None:intergenic | 35.0% | |
| TGCAAGTAAGTTCCAATTGA+AGG | + | chr1.1:52806548-52806567 | MS.gene49327:CDS | 35.0% | |
| TGCTATAAGCTGCAAATTGA+AGG | - | chr1.1:52805560-52805579 | None:intergenic | 35.0% | |
| TGCTATTGCTGTATCTTTCA+TGG | + | chr1.1:52810426-52810445 | MS.gene49327:intron | 35.0% | |
| TTACTTGATGCTGATGTGTA+TGG | + | chr1.1:52806576-52806595 | MS.gene49327:CDS | 35.0% | |
| TTGAAGCAAGCAATTGAACA+CGG | + | chr1.1:52810060-52810079 | MS.gene49327:intron | 35.0% | |
| TTGATCCCGTAACTATCAAT+GGG | - | chr1.1:52807588-52807607 | None:intergenic | 35.0% | |
| TTGCTTGCTTCAATAGAGTT+CGG | - | chr1.1:52810053-52810072 | None:intergenic | 35.0% | |
| TTTACCAGAAGCAATAGCTA+TGG | - | chr1.1:52805499-52805518 | None:intergenic | 35.0% | |
| ! | ATCAGGAGATTGCATTTTGT+CGG | + | chr1.1:52809094-52809113 | MS.gene49327:intron | 35.0% |
| ! | CAACTGTCCTTACAGATTTT+GGG | + | chr1.1:52809852-52809871 | MS.gene49327:intron | 35.0% |
| ! | CTATGTTTGATAGGTTTGGT+TGG | + | chr1.1:52805667-52805686 | MS.gene49327:intron | 35.0% |
| ! | CTCCTCTTCTAGTTATGTAT+TGG | - | chr1.1:52807303-52807322 | None:intergenic | 35.0% |
| ! | GCATCGACAATTTAGGTTAA+AGG | - | chr1.1:52806897-52806916 | None:intergenic | 35.0% |
| ! | TCAGTGTTATTGATTGCAGA+TGG | - | chr1.1:52808393-52808412 | None:intergenic | 35.0% |
| ! | TGATTCCCATTGATAGTTAC+GGG | + | chr1.1:52807580-52807599 | MS.gene49327:CDS | 35.0% |
| ! | TGCTTTAAATGTCCACATTG+TGG | + | chr1.1:52809894-52809913 | MS.gene49327:CDS | 35.0% |
| ! | TGTTGTTGTTGTATGCCATT+AGG | - | chr1.1:52809228-52809247 | None:intergenic | 35.0% |
| ! | TTTTGTCATGGCTTCTTCTA+TGG | + | chr1.1:52808627-52808646 | MS.gene49327:intron | 35.0% |
| ! | TTTTGTCGGAATCAGAGTTT+AGG | + | chr1.1:52809108-52809127 | MS.gene49327:intron | 35.0% |
| !! | AGTTCTAGTTGGATGCTTTT+TGG | + | chr1.1:52808038-52808057 | MS.gene49327:intron | 35.0% |
| !! | ATTTTCTCGTTTTATTGGCC+TGG | + | chr1.1:52810362-52810381 | MS.gene49327:intron | 35.0% |
| !! | CCAAGAACTAAAGTTCTAGA+AGG | - | chr1.1:52807759-52807778 | None:intergenic | 35.0% |
| !! | CCTTCTAGAACTTTAGTTCT+TGG | + | chr1.1:52807756-52807775 | MS.gene49327:intron | 35.0% |
| !! | CTATGTAGCATCGACAATTT+AGG | - | chr1.1:52806904-52806923 | None:intergenic | 35.0% |
| !! | GAACTGAAGTGTCGTAATAT+TGG | + | chr1.1:52808514-52808533 | MS.gene49327:intron | 35.0% |
| !! | GTTCTAGTTGGATGCTTTTT+GGG | + | chr1.1:52808039-52808058 | MS.gene49327:intron | 35.0% |
| !! | TCATCCCAATTGTTTTTCCA+AGG | + | chr1.1:52808942-52808961 | MS.gene49327:intron | 35.0% |
| !! | TCTGTAGTTTCTAGAGCATA+TGG | + | chr1.1:52810718-52810737 | MS.gene49327:CDS | 35.0% |
| !! | TGAGAAGCATTCATCTTCAA+TGG | + | chr1.1:52806943-52806962 | MS.gene49327:intron | 35.0% |
| !! | TTATCGATTCAAGATACCAC+TGG | + | chr1.1:52810636-52810655 | MS.gene49327:intron | 35.0% |
| !! | TTCTAGTTGGATGCTTTTTG+GGG | + | chr1.1:52808040-52808059 | MS.gene49327:intron | 35.0% |
| !!! | CATCCACTTCATTGGTTTTT+TGG | + | chr1.1:52807265-52807284 | MS.gene49327:intron | 35.0% |
| !!! | CATTGGTTTTTTGGATTGGA+CGG | + | chr1.1:52807274-52807293 | MS.gene49327:intron | 35.0% |
| !!! | TGGTTGGTTTTGAGTTGAAT+TGG | + | chr1.1:52805683-52805702 | MS.gene49327:intron | 35.0% |
| AACCAACTTAATGAGGTCAG+AGG | - | chr1.1:52809055-52809074 | None:intergenic | 40.0% | |
| AACTGCAATGGAAGATGGAA+AGG | - | chr1.1:52807518-52807537 | None:intergenic | 40.0% | |
| AAGCTACCCTGAAGAACTTA+TGG | + | chr1.1:52806338-52806357 | MS.gene49327:intron | 40.0% | |
| AAGCTCTTGAGAAAATGACG+AGG | + | chr1.1:52807889-52807908 | MS.gene49327:CDS | 40.0% | |
| AAGTAAAGGTCCAAGCTGTT+TGG | - | chr1.1:52808101-52808120 | None:intergenic | 40.0% | |
| AATCCCAGTTCTGCTTAATC+AGG | + | chr1.1:52809077-52809096 | MS.gene49327:intron | 40.0% | |
| ACCTAGCACAACCTTCTTTA+TGG | - | chr1.1:52808185-52808204 | None:intergenic | 40.0% | |
| AGAAACTACAGAATCAGGTG+CGG | - | chr1.1:52810710-52810729 | None:intergenic | 40.0% | |
| AGCTCTTGAGAAAATGACGA+GGG | + | chr1.1:52807890-52807909 | MS.gene49327:CDS | 40.0% | |
| AGTGTTGTCAAATATCGGCA+TGG | + | chr1.1:52808241-52808260 | MS.gene49327:intron | 40.0% | |
| ATCTCCTGATTAAGCAGAAC+TGG | - | chr1.1:52809084-52809103 | None:intergenic | 40.0% | |
| ATTCAAGATACCACTGGAAG+TGG | + | chr1.1:52810642-52810661 | MS.gene49327:intron | 40.0% | |
| ATTCCGGTAAAATGCTCACT+TGG | + | chr1.1:52808733-52808752 | MS.gene49327:intron | 40.0% | |
| CAAAACTTAGCCAAACAGCT+TGG | + | chr1.1:52808088-52808107 | MS.gene49327:intron | 40.0% | |
| CAAGTAACCCAACCTTCAAT+TGG | - | chr1.1:52806563-52806582 | None:intergenic | 40.0% | |
| CCAAAATCTGTAAGGACAGT+TGG | - | chr1.1:52809854-52809873 | None:intergenic | 40.0% | |
| CCTAGCACAACCTTCTTTAT+GGG | - | chr1.1:52808184-52808203 | None:intergenic | 40.0% | |
| CTATCTTCCCGATTCCTAAA+TGG | - | chr1.1:52808020-52808039 | None:intergenic | 40.0% | |
| CTTGATCCCGTAACTATCAA+TGG | - | chr1.1:52807589-52807608 | None:intergenic | 40.0% | |
| GATACCATAGCTATTGCTTC+TGG | + | chr1.1:52805492-52805511 | MS.gene49327:CDS | 40.0% | |
| GATATACCTTGAGTGACTTC+AGG | - | chr1.1:52806639-52806658 | None:intergenic | 40.0% | |
| GCATTCATCTTCAATGGCAT+TGG | + | chr1.1:52806949-52806968 | MS.gene49327:intron | 40.0% | |
| GGAACTTGTGTGTCCAATAT+AGG | + | chr1.1:52809705-52809724 | MS.gene49327:intron | 40.0% | |
| GGGATCAAGTGTATGTCAAT+AGG | + | chr1.1:52807600-52807619 | MS.gene49327:CDS | 40.0% | |
| TAAATAATGCCAGGGGAAGA+GGG | + | chr1.1:52810170-52810189 | MS.gene49327:intron | 40.0% | |
| TAAGATGCACCAAACACTAC+TGG | + | chr1.1:52808843-52808862 | MS.gene49327:intron | 40.0% | |
| TACAGCTACATGCATACCAT+GGG | - | chr1.1:52807666-52807685 | None:intergenic | 40.0% | |
| TATGTCAATAGGGTTCCTTG+TGG | + | chr1.1:52807611-52807630 | MS.gene49327:CDS | 40.0% | |
| TCTCAGAATCTGCAACTATC+AGG | + | chr1.1:52807987-52808006 | MS.gene49327:CDS | 40.0% | |
| TCTCCTGATTAAGCAGAACT+GGG | - | chr1.1:52809083-52809102 | None:intergenic | 40.0% | |
| TGTTGTCGGAATCAGAGTTT+AGG | + | chr1.1:52809178-52809197 | MS.gene49327:intron | 40.0% | |
| TTACAGCTACATGCATACCA+TGG | - | chr1.1:52807667-52807686 | None:intergenic | 40.0% | |
| TTGCATTAGACATCACCAAC+AGG | - | chr1.1:52808071-52808090 | None:intergenic | 40.0% | |
| TTTCATTGTGATCAGTGGCT+AGG | + | chr1.1:52805423-52805442 | MS.gene49327:intron | 40.0% | |
| ! | AAGCCAAGTGAGCATTTTAC+CGG | - | chr1.1:52808739-52808758 | None:intergenic | 40.0% |
| ! | ACTGATAAGCTAGCTTGTAG+CGG | + | chr1.1:52805809-52805828 | MS.gene49327:intron | 40.0% |
| ! | CAATGAGTTGGATCCAAACA+TGG | - | chr1.1:52809342-52809361 | None:intergenic | 40.0% |
| ! | CCAACTGTCCTTACAGATTT+TGG | + | chr1.1:52809851-52809870 | MS.gene49327:intron | 40.0% |
| ! | GTACTGGTACAGACACAATA+TGG | + | chr1.1:52806679-52806698 | MS.gene49327:intron | 40.0% |
| ! | GTGTCGATGTTCATCATGAT+AGG | - | chr1.1:52806612-52806631 | None:intergenic | 40.0% |
| ! | GTGTTATTGATTGCAGATGG+TGG | - | chr1.1:52808390-52808409 | None:intergenic | 40.0% |
| ! | TGCATTAATGGATGCGAGAA+GGG | + | chr1.1:52808684-52808703 | MS.gene49327:CDS | 40.0% |
| ! | TGTCAGTTTCGTAAGAGTGT+CGG | - | chr1.1:52806783-52806802 | None:intergenic | 40.0% |
| ! | TTGCATTAATGGATGCGAGA+AGG | + | chr1.1:52808683-52808702 | MS.gene49327:CDS | 40.0% |
| !! | ATCGGGAAGATAGTTCTAGT+TGG | + | chr1.1:52808027-52808046 | MS.gene49327:intron | 40.0% |
| !! | GCTCTAGAAACTACAGAATC+AGG | - | chr1.1:52810715-52810734 | None:intergenic | 40.0% |
| !! | TCAATTAGAGTATCGCCTCA+TGG | + | chr1.1:52808909-52808928 | MS.gene49327:intron | 40.0% |
| !! | TCTAGTTGGATGCTTTTTGG+GGG | + | chr1.1:52808041-52808060 | MS.gene49327:intron | 40.0% |
| !!! | ATCACACATGTCGGTTTTGT+AGG | + | chr1.1:52806850-52806869 | MS.gene49327:intron | 40.0% |
| !!! | GGGATTAAATTTTTTGGGCG+AGG | + | chr1.1:52809971-52809990 | MS.gene49327:CDS | 40.0% |
| AAATGACGAGGGGAGTTAAC+TGG | + | chr1.1:52807901-52807920 | MS.gene49327:CDS | 45.0% | |
| AAATGTCTCAGTCTCACCCT+CGG | - | chr1.1:52805336-52805355 | None:intergenic | 45.0% | |
| AACAGCACAACCTCTATTCC+TGG | + | chr1.1:52810559-52810578 | MS.gene49327:intron | 45.0% | |
| AATGACGAGGGGAGTTAACT+GGG | + | chr1.1:52807902-52807921 | MS.gene49327:CDS | 45.0% | |
| ACAAAGCCTGAAGTCACTCA+AGG | + | chr1.1:52806630-52806649 | MS.gene49327:CDS | 45.0% | |
| ACAGCTACATGCATACCATG+GGG | - | chr1.1:52807665-52807684 | None:intergenic | 45.0% | |
| ACGACGCCATCCTTCAAAAT+TGG | - | chr1.1:52808315-52808334 | None:intergenic | 45.0% | |
| ATCAGGGAAGCTTGTGATCA+AGG | + | chr1.1:52810667-52810686 | MS.gene49327:CDS | 45.0% | |
| CATAGCACAGCCACTGAAAT+GGG | + | chr1.1:52809951-52809970 | MS.gene49327:CDS | 45.0% | |
| CCATCCTTCAAAATTGGCCA+TGG | - | chr1.1:52808309-52808328 | None:intergenic | 45.0% | |
| CCCATAAAGAAGGTTGTGCT+AGG | + | chr1.1:52808181-52808200 | MS.gene49327:intron | 45.0% | |
| CTAAATAATGCCAGGGGAAG+AGG | + | chr1.1:52810169-52810188 | MS.gene49327:intron | 45.0% | |
| GCATGAACTGCAATGGAAGA+TGG | - | chr1.1:52807523-52807542 | None:intergenic | 45.0% | |
| GCTATTGCTTCTGGTAAAGG+CGG | + | chr1.1:52805501-52805520 | MS.gene49327:CDS | 45.0% | |
| GCTCTTGAGAAAATGACGAG+GGG | + | chr1.1:52807891-52807910 | MS.gene49327:CDS | 45.0% | |
| GTACAGACACAATATGGGCA+TGG | + | chr1.1:52806685-52806704 | MS.gene49327:intron | 45.0% | |
| GTCATGGCTTCTTCTATGGT+AGG | + | chr1.1:52808631-52808650 | MS.gene49327:intron | 45.0% | |
| GTTGTCAAATATCGGCATGG+CGG | + | chr1.1:52808244-52808263 | MS.gene49327:intron | 45.0% | |
| TATGAAGGTTCGCCACAATG+TGG | - | chr1.1:52809909-52809928 | None:intergenic | 45.0% | |
| TCAGGGAAGCTTGTGATCAA+GGG | + | chr1.1:52810668-52810687 | MS.gene49327:CDS | 45.0% | |
| TCATAGCACAGCCACTGAAA+TGG | + | chr1.1:52809950-52809969 | MS.gene49327:CDS | 45.0% | |
| TCCTTCAAAATTGGCCATGG+TGG | - | chr1.1:52808306-52808325 | None:intergenic | 45.0% | |
| TCTACCACCACAATCTGTCA+TGG | - | chr1.1:52808272-52808291 | None:intergenic | 45.0% | |
| TGCCTCTGACCTCATTAAGT+TGG | + | chr1.1:52809050-52809069 | MS.gene49327:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.1:52809273-52809292 | MS.gene49327:intron | 45.0% |
| ! | ACCACCATGGCCAATTTTGA+AGG | + | chr1.1:52808302-52808321 | MS.gene49327:intron | 45.0% |
| ! | AGTTCCACAGCATTTGAGAC+CGG | - | chr1.1:52809450-52809469 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.1:52809272-52809291 | MS.gene49327:intron | 45.0% |
| ! | GCATTAATGGATGCGAGAAG+GGG | + | chr1.1:52808685-52808704 | MS.gene49327:CDS | 45.0% |
| !! | CCATGGCCAATTTTGAAGGA+TGG | + | chr1.1:52808306-52808325 | MS.gene49327:intron | 45.0% |
| !! | TGTAGGAGTGTTGGAAACTC+TGG | + | chr1.1:52806867-52806886 | MS.gene49327:intron | 45.0% |
| !! | TTCTCGTTTTATTGGCCTGG+TGG | + | chr1.1:52810365-52810384 | MS.gene49327:intron | 45.0% |
| !! | TTGATTGCAGATGGTGGACA+TGG | - | chr1.1:52808384-52808403 | None:intergenic | 45.0% |
| !!! | TGTCGGTTTTGTAGGAGTGT+TGG | + | chr1.1:52806858-52806877 | MS.gene49327:intron | 45.0% |
| AACTGCTTGTGTCTACCACC+AGG | - | chr1.1:52810383-52810402 | None:intergenic | 50.0% | |
| ACCACTGGAAGTGGAGATCA+GGG | + | chr1.1:52810651-52810670 | MS.gene49327:CDS | 50.0% | |
| AGTATCGCCTCATGGTCATG+GGG | + | chr1.1:52808917-52808936 | MS.gene49327:intron | 50.0% | |
| ATAGATATGCCTCCTGGCAC+TGG | + | chr1.1:52807945-52807964 | MS.gene49327:CDS | 50.0% | |
| ATGACGAGGGGAGTTAACTG+GGG | + | chr1.1:52807903-52807922 | MS.gene49327:CDS | 50.0% | |
| ATTTGGACATCACCAGTGCC+AGG | - | chr1.1:52807960-52807979 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.1:52809274-52809293 | None:intergenic | 50.0% | |
| CTGGTGATAGATATGCCTCC+TGG | + | chr1.1:52807939-52807958 | MS.gene49327:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1.1:52809277-52809296 | MS.gene49327:intron | 50.0% | |
| GATGAATCCCCATGACCATG+AGG | - | chr1.1:52808927-52808946 | None:intergenic | 50.0% | |
| GGTCTCAAATGCTGTGGAAC+TGG | + | chr1.1:52809449-52809468 | MS.gene49327:intron | 50.0% | |
| GTCGGCAAATCAACAACTGC+TGG | + | chr1.1:52805525-52805544 | MS.gene49327:CDS | 50.0% | |
| TACCACTGGAAGTGGAGATC+AGG | + | chr1.1:52810650-52810669 | MS.gene49327:CDS | 50.0% | |
| TTTGAAGGATGGCGTCGTCA+TGG | + | chr1.1:52808317-52808336 | MS.gene49327:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.1:52809271-52809290 | MS.gene49327:intron | 50.0% |
| ! | GAGTATCGCCTCATGGTCAT+GGG | + | chr1.1:52808916-52808935 | MS.gene49327:intron | 50.0% |
| ! | GCGAAGCATCTTCGCATTGA+TGG | + | chr1.1:52805462-52805481 | MS.gene49327:CDS | 50.0% |
| ! | GTTCCACAGCATTTGAGACC+GGG | - | chr1.1:52809449-52809468 | None:intergenic | 50.0% |
| !! | AGAGTATCGCCTCATGGTCA+TGG | + | chr1.1:52808915-52808934 | MS.gene49327:intron | 50.0% |
| !! | ATTGCAGATGGTGGACATGG+TGG | - | chr1.1:52808381-52808400 | None:intergenic | 50.0% |
| !! | TAAGAGTGTCGGACATCGAC+AGG | - | chr1.1:52806772-52806791 | None:intergenic | 50.0% |
| ACACCCGGTCTCAAATGCTG+TGG | + | chr1.1:52809443-52809462 | MS.gene49327:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1.1:52809285-52809304 | MS.gene49327:intron | 55.0% | |
| AGAAGAATGCCCCGATCGTC+TGG | + | chr1.1:52807634-52807653 | MS.gene49327:CDS | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1.1:52809286-52809305 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.1:52809279-52809298 | None:intergenic | 55.0% | |
| CTGGGGGAACCTTGACATTC+TGG | + | chr1.1:52807920-52807939 | MS.gene49327:CDS | 55.0% | |
| GACATTGTACCCTCTTCCCC+TGG | - | chr1.1:52810182-52810201 | None:intergenic | 55.0% | |
| GCTTCTGGTAAAGGCGGTGT+CGG | + | chr1.1:52805507-52805526 | MS.gene49327:CDS | 55.0% | |
| TCAGGTGCGGCCAACACTAT+CGG | - | chr1.1:52810697-52810716 | None:intergenic | 55.0% | |
| TCCCTGATCTCCACTTCCAG+TGG | - | chr1.1:52810655-52810674 | None:intergenic | 55.0% | |
| TGACGAGGGGAGTTAACTGG+GGG | + | chr1.1:52807904-52807923 | MS.gene49327:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1.1:52809285-52809304 | None:intergenic | 55.0% | |
| TGTCGGACATCGACAGGTGT+TGG | - | chr1.1:52806766-52806785 | None:intergenic | 55.0% | |
| ! | GGCGTCGTCATGGCGTTTTA+TGG | + | chr1.1:52808327-52808346 | MS.gene49327:intron | 55.0% |
| ! | GGTGCCATGACAGATTGTGG+TGG | + | chr1.1:52808265-52808284 | MS.gene49327:intron | 55.0% |
| ! | TCGGGGCATTCTTCTCCACA+AGG | - | chr1.1:52807629-52807648 | None:intergenic | 55.0% |
| !! | CTTTTTGGGGGATCGCCTGT+TGG | + | chr1.1:52808053-52808072 | MS.gene49327:intron | 55.0% |
| !! | TCAAGGGCACCCGATAGTGT+TGG | + | chr1.1:52810684-52810703 | MS.gene49327:CDS | 55.0% |
| AATGCCCCGATCGTCTGGAG+AGG | + | chr1.1:52807639-52807658 | MS.gene49327:CDS | 60.0% | |
| ATGGGGCCTCTCCAGACGAT+CGG | - | chr1.1:52807648-52807667 | None:intergenic | 60.0% | |
| CAGGTGCGGCCAACACTATC+GGG | - | chr1.1:52810696-52810715 | None:intergenic | 60.0% | |
| TGGACATCACCAGTGCCAGG+AGG | - | chr1.1:52807957-52807976 | None:intergenic | 60.0% | |
| !! | GGCGGTGCCATGACAGATTG+TGG | + | chr1.1:52808262-52808281 | MS.gene49327:intron | 60.0% |
| GATCGTCTGGAGAGGCCCCA+TGG | + | chr1.1:52807647-52807666 | MS.gene49327:CDS | 65.0% | |
| TGGGGCCTCTCCAGACGATC+GGG | - | chr1.1:52807647-52807666 | None:intergenic | 65.0% | |
| GGGGCCTCTCCAGACGATCG+GGG | - | chr1.1:52807646-52807665 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52805327 | 52810807 | 52805327 | ID=MS.gene49327 |
| chr1.1 | mRNA | 52805327 | 52810807 | 52805327 | ID=MS.gene49327.t1;Parent=MS.gene49327 |
| chr1.1 | exon | 52805327 | 52805338 | 52805327 | ID=MS.gene49327.t1.exon1;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52805327 | 52805338 | 52805327 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52805438 | 52805546 | 52805438 | ID=MS.gene49327.t1.exon2;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52805438 | 52805546 | 52805438 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52806529 | 52806651 | 52806529 | ID=MS.gene49327.t1.exon3;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52806529 | 52806651 | 52806529 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52807571 | 52807668 | 52807571 | ID=MS.gene49327.t1.exon4;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52807571 | 52807668 | 52807571 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52807882 | 52808008 | 52807882 | ID=MS.gene49327.t1.exon5;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52807882 | 52808008 | 52807882 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52808653 | 52808738 | 52808653 | ID=MS.gene49327.t1.exon6;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52808653 | 52808738 | 52808653 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52809867 | 52809992 | 52809867 | ID=MS.gene49327.t1.exon7;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52809867 | 52809992 | 52809867 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| chr1.1 | exon | 52810649 | 52810807 | 52810649 | ID=MS.gene49327.t1.exon8;Parent=MS.gene49327.t1 |
| chr1.1 | CDS | 52810649 | 52810807 | 52810649 | ID=cds.MS.gene49327.t1;Parent=MS.gene49327.t1 |
| Gene Sequence |
| Protein sequence |
