Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004145.t1 | XP_003606505.2 | 98.8 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.00E+00 | 1608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004145.t1 | Q8RWZ7 | 79.1 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0e+00 | 1313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004145.t1 | G7JRI0 | 98.8 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.0e+00 | 1608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003676 | MS.gene004145 | PPI |
| MS.gene004145 | MS.gene23322 | PPI |
| MS.gene50737 | MS.gene004145 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004145.t1 | MTR_4g061090 | 98.780 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.0 | 1681 |
| MS.gene004145.t1 | MTR_2g093210 | 85.871 | 821 | 112 | 2 | 1 | 820 | 1 | 818 | 0.0 | 1479 |
| MS.gene004145.t1 | MTR_2g093210 | 86.287 | 773 | 102 | 2 | 49 | 820 | 9 | 778 | 0.0 | 1399 |
| MS.gene004145.t1 | MTR_2g093210 | 84.454 | 669 | 100 | 2 | 1 | 668 | 1 | 666 | 0.0 | 1184 |
| MS.gene004145.t1 | MTR_4g071070 | 62.515 | 811 | 301 | 2 | 9 | 819 | 12 | 819 | 0.0 | 1055 |
| MS.gene004145.t1 | MTR_3g112500 | 60.028 | 723 | 286 | 2 | 11 | 732 | 1 | 721 | 0.0 | 904 |
| MS.gene004145.t1 | MTR_2g093210 | 82.975 | 511 | 83 | 2 | 1 | 510 | 1 | 508 | 0.0 | 879 |
| MS.gene004145.t1 | MTR_2g438500 | 61.818 | 55 | 21 | 0 | 1 | 55 | 1 | 55 | 5.94e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004145.t1 | AT2G28520 | 79.121 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0 | 1336 |
| MS.gene004145.t1 | AT4G39080 | 63.300 | 812 | 291 | 5 | 11 | 819 | 14 | 821 | 0.0 | 1065 |
| MS.gene004145.t1 | AT2G21410 | 61.823 | 812 | 302 | 6 | 11 | 819 | 15 | 821 | 0.0 | 1056 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCATTGAGTTTGTTCT+TGG | 0.159404 | 4.2:-43029186 | MS.gene004145:CDS |
| TGAAGTTTCTTTAATATAAA+AGG | 0.184942 | 4.2:+43029721 | None:intergenic |
| ATCTTCGACTTTGGGCATTA+AGG | 0.218922 | 4.2:-43029140 | MS.gene004145:intron |
| AGCTTTATGGAGATGTTATT+TGG | 0.240092 | 4.2:-43031668 | MS.gene004145:CDS |
| GCATCTACAATTTCTTGATA+TGG | 0.247157 | 4.2:+43032412 | None:intergenic |
| ATGAAGATGTCCATTCTATT+TGG | 0.261369 | 4.2:-43030230 | MS.gene004145:CDS |
| CCAGCGACTAGGAAGCTTTA+TGG | 0.261951 | 4.2:-43031681 | MS.gene004145:intron |
| CTGAAAATTTGTGAAGCTTT+TGG | 0.275431 | 4.2:-43033829 | MS.gene004145:CDS |
| TATTTCAATGCTCGTTTCTT+TGG | 0.281066 | 4.2:-43030173 | MS.gene004145:CDS |
| ATCGCGCCTTGCTGACTTAG+AGG | 0.286780 | 4.2:-43033004 | MS.gene004145:CDS |
| TTCATGCCCTGCGTCTTCAC+TGG | 0.297238 | 4.2:-43027326 | MS.gene004145:CDS |
| TTGGCAGCTCACTGGATATA+AGG | 0.301774 | 4.2:-43030154 | MS.gene004145:intron |
| CAGCATCATATCTTCGACTT+TGG | 0.306552 | 4.2:-43029149 | MS.gene004145:CDS |
| AGATTTCAAGGACGCAATTA+TGG | 0.322855 | 4.2:-43029312 | MS.gene004145:CDS |
| TTGGTGAGAATGAGTTGTTC+TGG | 0.332655 | 4.2:-43029903 | MS.gene004145:CDS |
| TTCTTTAATATAAAAGGCTT+TGG | 0.332992 | 4.2:+43029727 | None:intergenic |
| CACCGAATCATCACCTATTT+AGG | 0.336677 | 4.2:-43038386 | MS.gene004145:CDS |
| TGGGATTAGGCATCGGAATA+AGG | 0.347557 | 4.2:-43032968 | MS.gene004145:CDS |
| TTAAGCCCCTTTGACAATCT+TGG | 0.349079 | 4.2:-43029922 | MS.gene004145:CDS |
| TAGGAGGTCATTTAGCAAAA+TGG | 0.353163 | 4.2:-43032933 | MS.gene004145:CDS |
| TTACTTATATCTTCAGGAAC+AGG | 0.356092 | 4.2:+43033793 | None:intergenic |
| CTTTATTGACCTGATCCATT+AGG | 0.359465 | 4.2:+43035077 | None:intergenic |
| CCTTTCAAACCTGAGAACTT+TGG | 0.360456 | 4.2:+43034117 | None:intergenic |
| CTTTGTTTACTTATATCTTC+AGG | 0.370890 | 4.2:+43033787 | None:intergenic |
| AGCATCATATCTTCGACTTT+GGG | 0.372911 | 4.2:-43029148 | MS.gene004145:CDS |
| TTGCCTGCTGCTTGGAGCAT+TGG | 0.373696 | 4.2:-43032144 | MS.gene004145:CDS |
| ACCGGCTGATGAGCAAATTA+TGG | 0.379432 | 4.2:-43034050 | MS.gene004145:CDS |
| GAAAGTCCTGCTACTAGCTT+GGG | 0.380018 | 4.2:-43028997 | MS.gene004145:CDS |
| CAACTTTGGATGCTGGGATT+AGG | 0.380654 | 4.2:-43032981 | MS.gene004145:CDS |
| ACCATACTTGGAGTGGCCTT+TGG | 0.387768 | 4.2:+43029878 | None:intergenic |
| CAGCTGGGATCCACACCAAA+TGG | 0.388952 | 4.2:+43030296 | None:intergenic |
| TGCTGACTTAGAGGCAACTT+TGG | 0.394715 | 4.2:-43032995 | MS.gene004145:CDS |
| TGCGGTGATGTTTGGCGACT+GGG | 0.396749 | 4.2:-43032177 | MS.gene004145:CDS |
| TGTAAATCATTATATGATAA+AGG | 0.396986 | 4.2:+43029950 | None:intergenic |
| CAGTTCTCTCTCTTCTGAAA+TGG | 0.400929 | 4.2:+43034389 | None:intergenic |
| TTGCGGTGATGTTTGGCGAC+TGG | 0.401761 | 4.2:-43032178 | MS.gene004145:CDS |
| CCTGGTTAACAAATGTTCTC+TGG | 0.402153 | 4.2:+43036586 | None:intergenic |
| GTTAAGGTGGCAAAGGAAAA+AGG | 0.402739 | 4.2:+43027255 | None:intergenic |
| CATGGAATTTGCCTGCTGCT+TGG | 0.408029 | 4.2:-43032152 | MS.gene004145:CDS |
| CCCTTCTCATTGTTGTCAAG+TGG | 0.418217 | 4.2:-43029993 | MS.gene004145:CDS |
| AAGACCGAGTTGGCCTAAAT+AGG | 0.420717 | 4.2:+43038373 | None:intergenic |
| AAGAAAGCTACGGTTCCTAA+TGG | 0.421538 | 4.2:-43035092 | MS.gene004145:CDS |
| TTATAAATCTTAAACCAGAT+TGG | 0.422718 | 4.2:+43034158 | None:intergenic |
| TTTGTACAGGAAACGATGCC+TGG | 0.425553 | 4.2:-43034196 | MS.gene004145:intron |
| GTTCAAAATTGTTCTGCAAA+AGG | 0.425950 | 4.2:-43034778 | MS.gene004145:intron |
| TTTGTAAATCCAAAGTTCTC+AGG | 0.426855 | 4.2:-43034126 | MS.gene004145:CDS |
| CAAGTGGTGTACTGGCTCTC+AGG | 0.427335 | 4.2:-43029977 | MS.gene004145:CDS |
| ATTGTTGTCAAGTGGTGTAC+TGG | 0.431280 | 4.2:-43029985 | MS.gene004145:CDS |
| AATCTACAATGAATTCTTCT+CGG | 0.431483 | 4.2:-43031594 | MS.gene004145:CDS |
| TGAACGACTTCCACGCCAGC+TGG | 0.432096 | 4.2:+43030280 | None:intergenic |
| ATAATAGTTGTGTAAACTGC+TGG | 0.436616 | 4.2:+43032215 | None:intergenic |
| TCATGCCCTGCGTCTTCACT+GGG | 0.437229 | 4.2:-43027325 | MS.gene004145:CDS |
| TGGTGAGAATGAGTTGTTCT+GGG | 0.439666 | 4.2:-43029902 | MS.gene004145:CDS |
| AGCGGATCTTGAGGTTGAAC+CGG | 0.441981 | 4.2:-43029271 | MS.gene004145:CDS |
| CCATCAAAATCTAACCAATC+TGG | 0.443170 | 4.2:-43034172 | MS.gene004145:CDS |
| ATGATATTATAGAGATTTCA+AGG | 0.443554 | 4.2:-43029324 | MS.gene004145:intron |
| CAATCTTATCATTCGGTTAG+TGG | 0.444110 | 4.2:-43027415 | MS.gene004145:CDS |
| TGAAAGGAAGCTCAGCAATC+AGG | 0.445908 | 4.2:-43032108 | MS.gene004145:intron |
| CCTTCATTCAATGGATGCAC+TGG | 0.450088 | 4.2:-43032476 | MS.gene004145:CDS |
| ATGGATCAGGTCAATAAAGC+TGG | 0.450542 | 4.2:-43035073 | MS.gene004145:CDS |
| AATCTTATCATTCGGTTAGT+GGG | 0.451403 | 4.2:-43027414 | MS.gene004145:CDS |
| TGATGTTGCCTGGCAGAATC+CGG | 0.452630 | 4.2:+43029252 | None:intergenic |
| TGGCTCTAATTGCAGTTCCA+TGG | 0.455979 | 4.2:-43029759 | MS.gene004145:CDS |
| ATGTTTGGCGACTGGGGTCA+TGG | 0.458466 | 4.2:-43032170 | MS.gene004145:CDS |
| CCAGAGAACATTTGTTAACC+AGG | 0.459096 | 4.2:-43036586 | MS.gene004145:intron |
| TAGAGGCAACTTTGGATGCT+GGG | 0.459606 | 4.2:-43032987 | MS.gene004145:CDS |
| GATACCCAAATAGACTGTTA+AGG | 0.471115 | 4.2:+43030019 | None:intergenic |
| ACTCAATGGAGTGAATCATT+TGG | 0.472059 | 4.2:+43029196 | None:intergenic |
| CTGGTTTAAGATTTATAAGC+GGG | 0.472941 | 4.2:-43034153 | MS.gene004145:CDS |
| TTCTCACCAAGATTGTCAAA+GGG | 0.473262 | 4.2:+43029916 | None:intergenic |
| TACAGAGAACCATACCCATT+TGG | 0.473631 | 4.2:-43030311 | MS.gene004145:CDS |
| CAAGAAATTGTAGATGCATA+CGG | 0.479666 | 4.2:-43032406 | MS.gene004145:CDS |
| ATTAAAGAAACTTCATAATG+AGG | 0.480131 | 4.2:-43029713 | MS.gene004145:intron |
| ATTAGGGATGCACATACTAC+TGG | 0.480874 | 4.2:-43030344 | MS.gene004145:intron |
| GGTATGACAATCTTATCATT+CGG | 0.482846 | 4.2:-43027422 | MS.gene004145:CDS |
| GGCTTTGGAAAGAGCATCCA+TGG | 0.483435 | 4.2:+43029742 | None:intergenic |
| TTAGAGGCAACTTTGGATGC+TGG | 0.483664 | 4.2:-43032988 | MS.gene004145:CDS |
| AGAAAGTCCTGCTACTAGCT+TGG | 0.483862 | 4.2:-43028998 | MS.gene004145:CDS |
| TTGAACGAATGTCATCTTCT+CGG | 0.485629 | 4.2:+43038433 | None:intergenic |
| CCAGTGCATCCATTGAATGA+AGG | 0.486632 | 4.2:+43032476 | None:intergenic |
| GGCCTAAATAGGTGATGATT+CGG | 0.486922 | 4.2:+43038384 | None:intergenic |
| GGATCTTATTTCAACTGAGA+TGG | 0.488910 | 4.2:-43034029 | MS.gene004145:intron |
| ATCTTGAGAGAGTTTAGAAA+GGG | 0.494160 | 4.2:+43030251 | None:intergenic |
| CCAAAGTTCTCAGGTTTGAA+AGG | 0.494490 | 4.2:-43034117 | MS.gene004145:CDS |
| AATAAATTCTACCACGGTGA+TGG | 0.495855 | 4.2:-43027291 | MS.gene004145:CDS |
| CTTGCAATCAGATACATACT+TGG | 0.497578 | 4.2:-43035029 | MS.gene004145:CDS |
| TCCGATATTTGCAAAAGCAC+AGG | 0.497930 | 4.2:-43032683 | MS.gene004145:intron |
| TATCTGATTGCAAGACAGAA+TGG | 0.498874 | 4.2:+43035038 | None:intergenic |
| AAATTCCTCATGATGTTGCC+TGG | 0.502941 | 4.2:+43029242 | None:intergenic |
| GCTACGGTTCCTAATGGATC+AGG | 0.503423 | 4.2:-43035086 | MS.gene004145:CDS |
| CATCTTGAGAGAGTTTAGAA+AGG | 0.509747 | 4.2:+43030250 | None:intergenic |
| TCGTTTCTTTGGCAGCTCAC+TGG | 0.510044 | 4.2:-43030162 | MS.gene004145:CDS |
| CATTTCAGAAGAGAGAGAAC+TGG | 0.510467 | 4.2:-43034388 | MS.gene004145:CDS |
| GACGCACCAAATATGTGAAA+AGG | 0.511111 | 4.2:+43031569 | None:intergenic |
| CATTTGGTGTGGATCCCAGC+TGG | 0.512737 | 4.2:-43030295 | MS.gene004145:CDS |
| GAACCAATGCTCCAAGCAGC+AGG | 0.514977 | 4.2:+43032141 | None:intergenic |
| ATTCGGTGAGCGGACTCAGC+GGG | 0.515932 | 4.2:+43038401 | None:intergenic |
| AGGTTGAACCGGATTCTGCC+AGG | 0.519264 | 4.2:-43029260 | MS.gene004145:CDS |
| TTATGGAGATGTTATTTGGT+GGG | 0.523066 | 4.2:-43031664 | MS.gene004145:CDS |
| ATGTACCACACCAAATAGAA+TGG | 0.523321 | 4.2:+43030220 | None:intergenic |
| TAACAAATGTTCTCTGGAAG+GGG | 0.525703 | 4.2:+43036592 | None:intergenic |
| TACATACTTGGAGGATATAG+AGG | 0.538894 | 4.2:-43035017 | MS.gene004145:intron |
| ATTCTCACCAAGATTGTCAA+AGG | 0.538979 | 4.2:+43029915 | None:intergenic |
| AGCTGGGATCCACACCAAAT+GGG | 0.540431 | 4.2:+43030297 | None:intergenic |
| TGGTGTGGTACATATGAACT+TGG | 0.541184 | 4.2:-43030210 | MS.gene004145:CDS |
| TTAACAAATGTTCTCTGGAA+GGG | 0.543625 | 4.2:+43036591 | None:intergenic |
| TCCATAATTTGCTCATCAGC+CGG | 0.544690 | 4.2:+43034049 | None:intergenic |
| ATATGGATTTGTGAAACTGT+TGG | 0.545071 | 4.2:+43032429 | None:intergenic |
| AGAACCAAGAACAAACTCAA+TGG | 0.546926 | 4.2:+43029182 | None:intergenic |
| GCAATCAGATACATACTTGG+AGG | 0.551244 | 4.2:-43035026 | MS.gene004145:CDS |
| CTGTTGGTTCTAAAATATGT+AGG | 0.554704 | 4.2:+43032445 | None:intergenic |
| TACTTATATCTTCAGGAACA+GGG | 0.558496 | 4.2:+43033794 | None:intergenic |
| GGATCCACACCAAATGGGTA+TGG | 0.561377 | 4.2:+43030302 | None:intergenic |
| AATAAGGCTCTATCTTCTGT+AGG | 0.561847 | 4.2:-43032952 | MS.gene004145:CDS |
| GACACCTGCATGAACTATCT+CGG | 0.562857 | 4.2:+43031534 | None:intergenic |
| TTTGACAGCAATTCTCAAGT+GGG | 0.564303 | 4.2:-43032505 | MS.gene004145:CDS |
| ATGAGTTGTTCTGGGGCCAA+AGG | 0.565727 | 4.2:-43029894 | MS.gene004145:CDS |
| CCACTTGACAACAATGAGAA+GGG | 0.565912 | 4.2:+43029993 | None:intergenic |
| GTAAACAAAGGCAAATAACC+CGG | 0.566335 | 4.2:-43033774 | MS.gene004145:CDS |
| TACCTCTGAAGCGGATCTTG+AGG | 0.567052 | 4.2:-43029280 | MS.gene004145:CDS |
| AAGAAATTGTAGATGCATAC+GGG | 0.568650 | 4.2:-43032405 | MS.gene004145:intron |
| GTTAACAAATGTTCTCTGGA+AGG | 0.571175 | 4.2:+43036590 | None:intergenic |
| ATCTGATTGCAAGACAGAAT+GGG | 0.571405 | 4.2:+43035039 | None:intergenic |
| ATCACCTATTTAGGCCAACT+CGG | 0.571758 | 4.2:-43038377 | MS.gene004145:CDS |
| TTTATGGAGATGTTATTTGG+TGG | 0.575690 | 4.2:-43031665 | MS.gene004145:CDS |
| TATGATTTCTGCCAGCGACT+AGG | 0.579385 | 4.2:-43031692 | MS.gene004145:intron |
| TGGATGCTGGGATTAGGCAT+CGG | 0.580692 | 4.2:-43032975 | MS.gene004145:CDS |
| TGGTTCTTATAGCACATGAA+AGG | 0.580897 | 4.2:-43032124 | MS.gene004145:CDS |
| GAAAAGCATATTGCCTCTTG+TGG | 0.583078 | 4.2:+43034081 | None:intergenic |
| GAACGACTTCCACGCCAGCT+GGG | 0.584129 | 4.2:+43030281 | None:intergenic |
| TGGATCAGGTCAATAAAGCT+GGG | 0.585348 | 4.2:-43035072 | MS.gene004145:CDS |
| ATCCTCGGTTAAGGTGGCAA+AGG | 0.586241 | 4.2:+43027248 | None:intergenic |
| TTGACAGCAATTCTCAAGTG+GGG | 0.586879 | 4.2:-43032504 | MS.gene004145:CDS |
| TTCAGAAGAGAGAGAACTGG+AGG | 0.587684 | 4.2:-43034385 | MS.gene004145:CDS |
| TTCTGCCAGGCAACATCATG+AGG | 0.588694 | 4.2:-43029247 | MS.gene004145:CDS |
| ATCTTATCATTCGGTTAGTG+GGG | 0.588871 | 4.2:-43027413 | MS.gene004145:CDS |
| ATAGGTGATGATTCGGTGAG+CGG | 0.591098 | 4.2:+43038391 | None:intergenic |
| ACCACTTGACAACAATGAGA+AGG | 0.593169 | 4.2:+43029992 | None:intergenic |
| AGGTCATTTAGCAAAATGGA+TGG | 0.593655 | 4.2:-43032929 | MS.gene004145:CDS |
| GAACGCATGAGATCCATTGA+AGG | 0.595669 | 4.2:+43038455 | None:intergenic |
| ATGTTGTTTCGTGCCACAAG+AGG | 0.596841 | 4.2:-43034094 | MS.gene004145:CDS |
| TTCCTTTGCCACCTTAACCG+AGG | 0.599921 | 4.2:-43027250 | MS.gene004145:CDS |
| TGACAGCAATTCTCAAGTGG+GGG | 0.606342 | 4.2:-43032503 | MS.gene004145:CDS |
| GTCCTAGGTAAGAAGAGAGA+AGG | 0.607614 | 4.2:-43032776 | MS.gene004145:intron |
| AACCTCAAGATCCGCTTCAG+AGG | 0.611912 | 4.2:+43029278 | None:intergenic |
| AATGTCTTGTTGGAGAGGGC+TGG | 0.614708 | 4.2:-43032708 | MS.gene004145:CDS |
| AAGGCTCTATCTTCTGTAGG+AGG | 0.618034 | 4.2:-43032949 | MS.gene004145:CDS |
| CAGAAATGTCAAGAAAGCTA+CGG | 0.623573 | 4.2:-43035102 | MS.gene004145:CDS |
| TTTCAAAATAAATTCTACCA+CGG | 0.624068 | 4.2:-43027297 | MS.gene004145:CDS |
| TTCAACCCAGTGAAGACGCA+GGG | 0.627548 | 4.2:+43027320 | None:intergenic |
| GAAATTGAAGAAGACCGAGT+TGG | 0.632332 | 4.2:+43038363 | None:intergenic |
| ATTCAACCCAGTGAAGACGC+AGG | 0.632811 | 4.2:+43027319 | None:intergenic |
| CTGAAGATATAAGTAAACAA+AGG | 0.646221 | 4.2:-43033786 | MS.gene004145:CDS |
| TCTGGTTTAAGATTTATAAG+CGG | 0.646579 | 4.2:-43034154 | MS.gene004145:CDS |
| TAAACAAAGGCAAATAACCC+GGG | 0.647105 | 4.2:-43033773 | MS.gene004145:CDS |
| TTTAGCAAAATGGATGGACA+TGG | 0.648626 | 4.2:-43032923 | MS.gene004145:intron |
| AAAGTCCTGCTACTAGCTTG+GGG | 0.651364 | 4.2:-43028996 | MS.gene004145:CDS |
| GCGGTGATGTTTGGCGACTG+GGG | 0.651684 | 4.2:-43032176 | MS.gene004145:CDS |
| TTGGTTCTAAAATATGTAGG+TGG | 0.652091 | 4.2:+43032448 | None:intergenic |
| TGTGCTTAATACCTCTGAAG+CGG | 0.653524 | 4.2:-43029289 | MS.gene004145:CDS |
| AATGCCGAGATAGTTCATGC+AGG | 0.655608 | 4.2:-43031538 | MS.gene004145:intron |
| TCTCACCAAGATTGTCAAAG+GGG | 0.658739 | 4.2:+43029917 | None:intergenic |
| GATGTCCATTCTATTTGGTG+TGG | 0.659577 | 4.2:-43030225 | MS.gene004145:CDS |
| GGTGTGGATCCCAGCTGGCG+TGG | 0.661930 | 4.2:-43030290 | MS.gene004145:CDS |
| GGTGTGGTACATATGAACTT+GGG | 0.664543 | 4.2:-43030209 | MS.gene004145:CDS |
| GGTGAGAATGAGTTGTTCTG+GGG | 0.669382 | 4.2:-43029901 | MS.gene004145:CDS |
| TGAGGAATTTAATTTCAGTG+AGG | 0.676594 | 4.2:-43029229 | MS.gene004145:CDS |
| AGAACCATACCCATTTGGTG+TGG | 0.678548 | 4.2:-43030306 | MS.gene004145:CDS |
| AAGTTGCCTCTAAGTCAGCA+AGG | 0.680382 | 4.2:+43032998 | None:intergenic |
| GATTCGGTGAGCGGACTCAG+CGG | 0.691576 | 4.2:+43038400 | None:intergenic |
| AAGTCCTGCTACTAGCTTGG+GGG | 0.696904 | 4.2:-43028995 | MS.gene004145:intron |
| CTGTTAAGGAAAATCATCTG+CGG | 0.714419 | 4.2:+43030033 | None:intergenic |
| ACAAAGGCAAATAACCCGGG+AGG | 0.743957 | 4.2:-43033770 | MS.gene004145:intron |
| TGAACTTGTATCCATCACCG+TGG | 0.780160 | 4.2:+43027280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 43027239 | 43038501 | 43027239 | ID=MS.gene004145 |
| chr4.2 | mRNA | 43027239 | 43038501 | 43027239 | ID=MS.gene004145.t1;Parent=MS.gene004145 |
| chr4.2 | exon | 43038358 | 43038501 | 43038358 | ID=MS.gene004145.t1.exon1;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43038358 | 43038501 | 43038358 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43036587 | 43036631 | 43036587 | ID=MS.gene004145.t1.exon2;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43036587 | 43036631 | 43036587 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43035018 | 43035137 | 43035018 | ID=MS.gene004145.t1.exon3;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43035018 | 43035137 | 43035018 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43034779 | 43034886 | 43034779 | ID=MS.gene004145.t1.exon4;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43034779 | 43034886 | 43034779 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43034332 | 43034445 | 43034332 | ID=MS.gene004145.t1.exon5;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43034332 | 43034445 | 43034332 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43034030 | 43034209 | 43034030 | ID=MS.gene004145.t1.exon6;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43034030 | 43034209 | 43034030 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43033771 | 43033908 | 43033771 | ID=MS.gene004145.t1.exon7;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43033771 | 43033908 | 43033771 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43032924 | 43033031 | 43032924 | ID=MS.gene004145.t1.exon8;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43032924 | 43033031 | 43032924 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43032684 | 43032791 | 43032684 | ID=MS.gene004145.t1.exon9;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43032684 | 43032791 | 43032684 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43032406 | 43032554 | 43032406 | ID=MS.gene004145.t1.exon10;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43032406 | 43032554 | 43032406 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43032109 | 43032262 | 43032109 | ID=MS.gene004145.t1.exon11;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43032109 | 43032262 | 43032109 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43031539 | 43031699 | 43031539 | ID=MS.gene004145.t1.exon12;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43031539 | 43031699 | 43031539 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43030155 | 43030361 | 43030155 | ID=MS.gene004145.t1.exon13;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43030155 | 43030361 | 43030155 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43029885 | 43030068 | 43029885 | ID=MS.gene004145.t1.exon14;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43029885 | 43030068 | 43029885 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43029714 | 43029797 | 43029714 | ID=MS.gene004145.t1.exon15;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43029714 | 43029797 | 43029714 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43029141 | 43029334 | 43029141 | ID=MS.gene004145.t1.exon16;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43029141 | 43029334 | 43029141 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43028996 | 43029055 | 43028996 | ID=MS.gene004145.t1.exon17;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43028996 | 43029055 | 43028996 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| chr4.2 | exon | 43027239 | 43027443 | 43027239 | ID=MS.gene004145.t1.exon18;Parent=MS.gene004145.t1 |
| chr4.2 | CDS | 43027239 | 43027443 | 43027239 | ID=cds.MS.gene004145.t1;Parent=MS.gene004145.t1 |
| Gene Sequence |
| Protein sequence |
