Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003676.t1 | XP_003607000.1 | 97.2 | 822 | 23 | 0 | 1 | 822 | 1 | 822 | 0.00E+00 | 1581.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003676.t1 | Q8W4S4 | 78.1 | 809 | 174 | 3 | 14 | 820 | 14 | 821 | 0.0e+00 | 1255.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003676.t1 | G7JIL4 | 97.2 | 822 | 23 | 0 | 1 | 822 | 1 | 822 | 0.0e+00 | 1581.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028764 | MS.gene003676 | PPI |
| MS.gene003676 | MS.gene31337 | PPI |
| MS.gene003676 | MS.gene043556 | PPI |
| MS.gene003676 | MS.gene50737 | PPI |
| MS.gene003676 | MS.gene004145 | PPI |
| MS.gene003676 | MS.gene23322 | PPI |
| MS.gene003676 | MS.gene65268 | PPI |
| MS.gene003676 | MS.gene08574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003676.t1 | MTR_4g071070 | 98.783 | 822 | 10 | 0 | 1 | 822 | 1 | 822 | 0.0 | 1691 |
| MS.gene003676.t1 | MTR_3g112500 | 71.290 | 721 | 205 | 2 | 14 | 732 | 1 | 721 | 0.0 | 1072 |
| MS.gene003676.t1 | MTR_4g061090 | 62.315 | 812 | 303 | 2 | 12 | 820 | 9 | 820 | 0.0 | 1058 |
| MS.gene003676.t1 | MTR_2g093210 | 62.639 | 811 | 300 | 3 | 12 | 820 | 9 | 818 | 0.0 | 1053 |
| MS.gene003676.t1 | MTR_2g093210 | 61.997 | 771 | 290 | 3 | 52 | 820 | 9 | 778 | 0.0 | 991 |
| MS.gene003676.t1 | MTR_2g093210 | 61.035 | 657 | 253 | 3 | 12 | 666 | 9 | 664 | 0.0 | 833 |
| MS.gene003676.t1 | MTR_2g093210 | 56.487 | 501 | 215 | 3 | 12 | 510 | 9 | 508 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003676.t1 | AT2G21410 | 77.847 | 808 | 177 | 2 | 14 | 820 | 15 | 821 | 0.0 | 1303 |
| MS.gene003676.t1 | AT4G39080 | 77.998 | 809 | 175 | 3 | 14 | 820 | 14 | 821 | 0.0 | 1300 |
| MS.gene003676.t1 | AT2G28520 | 61.235 | 810 | 307 | 4 | 12 | 815 | 9 | 817 | 0.0 | 1004 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATGGACCTGCAGGTTTC+TGG | 0.135416 | 4.1:-31797732 | MS.gene003676:intron |
| CCCTTTCTCGTTCTCATTGT+TGG | 0.201142 | 4.1:-31792121 | MS.gene003676:CDS |
| CGCCGTTATGTTTGGTGATT+GGG | 0.206487 | 4.1:-31795508 | MS.gene003676:CDS |
| CCGGTCACAGACCCTGTTTC+TGG | 0.211772 | 4.1:-31799638 | MS.gene003676:CDS |
| TTTCAAGGAGCAAATGTTTA+AGG | 0.222273 | 4.1:-31801381 | MS.gene003676:CDS |
| ATGAAAATGTCAATTCTTCT+TGG | 0.225562 | 4.1:-31793837 | MS.gene003676:CDS |
| GTTAACTTGCTGGAAAATAT+TGG | 0.239254 | 4.1:-31797660 | MS.gene003676:CDS |
| ATGTTGCTTCTTCAAAATAA+AGG | 0.244060 | 4.1:+31793192 | None:intergenic |
| CTACGAGAAGGTTCTGCTTA+TGG | 0.275406 | 4.1:-31792684 | MS.gene003676:CDS |
| CCTGAGCCCAACCGATGATT+TGG | 0.278131 | 4.1:-31793431 | MS.gene003676:CDS |
| GCGGGTCCTACTTACCCTTT+TGG | 0.280511 | 4.1:-31793918 | MS.gene003676:CDS |
| TGCAAGCTCTCCTCTGTGTT+TGG | 0.280630 | 4.1:+31793045 | None:intergenic |
| CGCCCTCGTAAAATTTGTTT+TGG | 0.289401 | 4.1:+31792160 | None:intergenic |
| TCGCCGTTATGTTTGGTGAT+TGG | 0.291200 | 4.1:-31795509 | MS.gene003676:CDS |
| TATGGAAGCACCTTTATTAC+AGG | 0.310093 | 4.1:-31799908 | MS.gene003676:CDS |
| GACATCACAGCAATGACTTT+TGG | 0.313484 | 4.1:-31794192 | MS.gene003676:CDS |
| TGCATGCATTGCGTCTTCAC+TGG | 0.315321 | 4.1:-31792191 | MS.gene003676:CDS |
| CAGCTCTATATTTCATAATC+AGG | 0.318492 | 4.1:-31795461 | MS.gene003676:CDS |
| GGCGAGAACCAACTCTTTGC+TGG | 0.320495 | 4.1:-31793409 | MS.gene003676:CDS |
| GACTGTGTTGTGGAACCTTT+TGG | 0.334580 | 4.1:+31801347 | None:intergenic |
| CTCATCAAAGCCGGTTAAGC+TGG | 0.338126 | 4.1:-31799768 | MS.gene003676:CDS |
| TGTTGCTTCTTCAAAATAAA+GGG | 0.342377 | 4.1:+31793193 | None:intergenic |
| CATCAAGGCTTAGCATGTTA+AGG | 0.343378 | 4.1:+31797061 | None:intergenic |
| CCAACTGAGTGGGGAATCTA+TGG | 0.347616 | 4.1:-31799926 | MS.gene003676:CDS |
| TTCTTCAAAATAAAGGGTTT+TGG | 0.353982 | 4.1:+31793199 | None:intergenic |
| TCTACTTGGTCCTGTAATAA+AGG | 0.355890 | 4.1:+31799898 | None:intergenic |
| TTAACTTGCTGGAAAATATT+GGG | 0.362742 | 4.1:-31797659 | MS.gene003676:CDS |
| AAAACAAGCTCAAATGATTT+CGG | 0.364391 | 4.1:-31798614 | MS.gene003676:CDS |
| ATATTTCTTAATAGTCTCTT+CGG | 0.372838 | 4.1:-31793532 | MS.gene003676:CDS |
| ATATGAGCAATGGAATCTTT+TGG | 0.375775 | 4.1:-31797631 | MS.gene003676:intron |
| TAATGTGATTATCCTGATAG+TGG | 0.381389 | 4.1:-31792280 | MS.gene003676:CDS |
| GGTATGCAAAACTTGCAAAA+TGG | 0.383391 | 4.1:+31796807 | None:intergenic |
| CTGAGCCCAACCGATGATTT+GGG | 0.389999 | 4.1:-31793430 | MS.gene003676:CDS |
| GTGCGAAAGTCCAGCATCTA+TGG | 0.395372 | 4.1:+31797686 | None:intergenic |
| CATGTTAAGGGTATGGTGAA+TGG | 0.398499 | 4.1:+31797074 | None:intergenic |
| TATTTCTTAATAGTCTCTTC+GGG | 0.400389 | 4.1:-31793531 | MS.gene003676:CDS |
| TGCAGGGATTCTACAACAAT+AGG | 0.402521 | 4.1:-31793951 | MS.gene003676:intron |
| TGGCCGGTGTTGCTGTGCCC+TGG | 0.402596 | 4.1:-31793231 | MS.gene003676:CDS |
| AACATAACGGCGAAAAGAAA+TGG | 0.408551 | 4.1:+31795519 | None:intergenic |
| TCTGTCCCATTCGAACTCTT+CGG | 0.408774 | 4.1:-31794099 | MS.gene003676:CDS |
| ATCAAGGCTTAGCATGTTAA+GGG | 0.409951 | 4.1:+31797062 | None:intergenic |
| CAAGGAATTATAGACTCATA+TGG | 0.413718 | 4.1:-31796733 | MS.gene003676:CDS |
| TACCCGTTTGCTGAGGAACT+TGG | 0.417368 | 4.1:-31798637 | MS.gene003676:CDS |
| GGAGAGGTTGCGCGTGGAGG+TGG | 0.419479 | 4.1:-31803155 | MS.gene003676:CDS |
| CTCTTTGCTGCTCAATTGCA+CGG | 0.421919 | 4.1:+31799962 | None:intergenic |
| AAACAATGAGACCCACTATC+AGG | 0.423533 | 4.1:+31792268 | None:intergenic |
| TTCGCACCGAGTTAACTTGC+TGG | 0.428744 | 4.1:-31797670 | MS.gene003676:CDS |
| AAATTTACGTCTTCGTATCA+AGG | 0.430553 | 4.1:-31796751 | MS.gene003676:CDS |
| CACACTATAGAATTTGTACT+TGG | 0.436117 | 4.1:-31792949 | MS.gene003676:CDS |
| TTCTCGCCCAAATCATCGGT+TGG | 0.443147 | 4.1:+31793424 | None:intergenic |
| CCCTTCTTATTATTGTGAAG+TGG | 0.445356 | 4.1:-31793501 | MS.gene003676:CDS |
| GCTGCATAAGTGCGTTGAAA+AGG | 0.445824 | 4.1:+31802226 | None:intergenic |
| ACCTTCGTCTGTGGGCCCTT+AGG | 0.448450 | 4.1:-31792903 | MS.gene003676:intron |
| GCAGACTGCTGTTGAGGATC+CGG | 0.451510 | 4.1:-31799657 | MS.gene003676:CDS |
| CATACAGGATCCACTCCAAA+AGG | 0.451529 | 4.1:+31793903 | None:intergenic |
| TTCCAAGTTCCTCAGCAAAC+GGG | 0.454395 | 4.1:+31798635 | None:intergenic |
| CTCTCCTCTGTGTTTGGAAG+TGG | 0.454642 | 4.1:+31793051 | None:intergenic |
| AAAAGAACTCATTATAGATC+AGG | 0.460264 | 4.1:+31794121 | None:intergenic |
| CTGCATAAGTGCGTTGAAAA+GGG | 0.460346 | 4.1:+31802227 | None:intergenic |
| CACTGCACCGTTTCATATCT+CGG | 0.462359 | 4.1:-31803056 | MS.gene003676:CDS |
| CGTTGGAGTGTTACTTGTCA+TGG | 0.463138 | 4.1:-31792232 | MS.gene003676:CDS |
| TCAACGCACTTATGCAGCTC+AGG | 0.466112 | 4.1:-31802221 | MS.gene003676:intron |
| AAGGCAGGTGTTTCACCAAA+AGG | 0.468071 | 4.1:-31801362 | MS.gene003676:CDS |
| GCATGCATTGCGTCTTCACT+GGG | 0.470596 | 4.1:-31792190 | MS.gene003676:CDS |
| TCCAACAATGAGAACGAGAA+AGG | 0.475913 | 4.1:+31792120 | None:intergenic |
| CCAAATCATCGGTTGGGCTC+AGG | 0.478517 | 4.1:+31793431 | None:intergenic |
| AGACCCTGTTTCTGGAGAAA+AGG | 0.481777 | 4.1:-31799630 | MS.gene003676:intron |
| AAATTTGTTCGTGCGAAAGT+AGG | 0.483894 | 4.1:+31796768 | None:intergenic |
| TTTCCAAGTTCCTCAGCAAA+CGG | 0.485589 | 4.1:+31798634 | None:intergenic |
| GACTATTAAGAAATATCACC+TGG | 0.487628 | 4.1:+31793539 | None:intergenic |
| CATCCAGGGCACAGCAACAC+CGG | 0.491441 | 4.1:+31793228 | None:intergenic |
| GATCATTACGTGGTACAAAT+CGG | 0.493854 | 4.1:+31793462 | None:intergenic |
| CAGCCCGCTTTAATGCATCC+TGG | 0.494663 | 4.1:+31796857 | None:intergenic |
| GAAGGTTCTGCTTATGGCAT+GGG | 0.496052 | 4.1:-31792678 | MS.gene003676:CDS |
| CTGAATGAGTTGCATAGGTT+CGG | 0.496944 | 4.1:+31803103 | None:intergenic |
| TGCATTAAAGCGGGCTGCAA+AGG | 0.498340 | 4.1:-31796851 | MS.gene003676:CDS |
| TTATGTTACTTCAGAGGCAC+GGG | 0.498347 | 4.1:-31793089 | MS.gene003676:intron |
| GGCTTAGCATGTTAAGGGTA+TGG | 0.500989 | 4.1:+31797067 | None:intergenic |
| CTGAAAATATGTGACGCCTT+TGG | 0.502151 | 4.1:-31798670 | MS.gene003676:CDS |
| TACTAACATCTTTGAACTGA+AGG | 0.502907 | 4.1:+31803021 | None:intergenic |
| TCTCGCCCAAATCATCGGTT+GGG | 0.504079 | 4.1:+31793425 | None:intergenic |
| TATTATTGTGAAGTGGTGCA+CGG | 0.506213 | 4.1:-31793494 | MS.gene003676:CDS |
| ACCACTTCACAATAATAAGA+AGG | 0.507841 | 4.1:+31793500 | None:intergenic |
| AACAATAGGGCTGATAAAAG+CGG | 0.510498 | 4.1:-31793937 | MS.gene003676:CDS |
| TCATCAAAGCCGGTTAAGCT+GGG | 0.512461 | 4.1:-31799767 | MS.gene003676:CDS |
| GTTTCATATCTCGGTGACCT+TGG | 0.514062 | 4.1:-31803047 | MS.gene003676:CDS |
| CTACGTGTACCATGCCATAC+AGG | 0.514112 | 4.1:+31793888 | None:intergenic |
| AAGGAGCAAATGTTTAAGGC+AGG | 0.518157 | 4.1:-31801377 | MS.gene003676:CDS |
| AATAGCTCATTATAATTCCA+AGG | 0.518320 | 4.1:+31793799 | None:intergenic |
| GATTAAAAGATGCGGAGAGA+TGG | 0.524538 | 4.1:-31801420 | MS.gene003676:CDS |
| CCAGAAACAGGGTCTGTGAC+CGG | 0.526308 | 4.1:+31799638 | None:intergenic |
| AAGGAATTATAGACTCATAT+GGG | 0.526737 | 4.1:-31796732 | MS.gene003676:intron |
| GCCGTTATGTTTGGTGATTG+GGG | 0.527670 | 4.1:-31795507 | MS.gene003676:CDS |
| GGTGCAGTGAGCGGATTCCA+TGG | 0.529547 | 4.1:+31803070 | None:intergenic |
| CCATAGATTCCCCACTCAGT+TGG | 0.529914 | 4.1:+31799926 | None:intergenic |
| GTAGGTAGGTGGTGACTCCC+TGG | 0.530305 | 4.1:+31796786 | None:intergenic |
| TTGAATCACGCCAACTGAGT+GGG | 0.533204 | 4.1:-31799936 | MS.gene003676:CDS |
| AGGTGGTTGTTGTCCTCCGA+TGG | 0.533393 | 4.1:-31803138 | MS.gene003676:CDS |
| TGTGCCGCGACGATTCTTGC+AGG | 0.534917 | 4.1:-31794062 | MS.gene003676:intron |
| GGAGTTGCTCAAATGAACCT+TGG | 0.535111 | 4.1:-31793816 | MS.gene003676:CDS |
| CTCAAATTCCTCATGACCAT+GGG | 0.535664 | 4.1:+31793002 | None:intergenic |
| GCAGGGATTCTACAACAATA+GGG | 0.536043 | 4.1:-31793950 | MS.gene003676:intron |
| ATCTTATTTCGTGCTACTAG+AGG | 0.536230 | 4.1:-31799695 | MS.gene003676:CDS |
| CAGCATCTTACCTTCGTCTG+TGG | 0.537798 | 4.1:-31792912 | MS.gene003676:CDS |
| TTTGAGGCAGACTGCTGTTG+AGG | 0.538625 | 4.1:-31799663 | MS.gene003676:CDS |
| GGAGAAGAAACTTTCTAGCC+AGG | 0.540506 | 4.1:-31795439 | MS.gene003676:intron |
| GCATGGAATATGTTTACTGC+TGG | 0.541816 | 4.1:-31795484 | MS.gene003676:CDS |
| TTGGTTCTCGCCCAAATCAT+CGG | 0.545089 | 4.1:+31793420 | None:intergenic |
| ATTATTGTGAAGTGGTGCAC+GGG | 0.545515 | 4.1:-31793493 | MS.gene003676:CDS |
| TTGCAGACCACCATAGATGC+TGG | 0.545964 | 4.1:-31797696 | MS.gene003676:CDS |
| TTCAAACTCATAGGTGAGGA+AGG | 0.549691 | 4.1:-31797103 | MS.gene003676:intron |
| ATGGGAGAGGTTGCGCGTGG+AGG | 0.550555 | 4.1:-31803158 | MS.gene003676:CDS |
| TTTAGCAGGTCTTGTTCCCA+GGG | 0.552250 | 4.1:-31799741 | MS.gene003676:CDS |
| TGTGTTTGGAAGTGGTGCAT+AGG | 0.552543 | 4.1:+31793059 | None:intergenic |
| GAGGGACCGAAGAGTTCGAA+TGG | 0.552948 | 4.1:+31794093 | None:intergenic |
| CCAACAATGAGAACGAGAAA+GGG | 0.554263 | 4.1:+31792121 | None:intergenic |
| ATCAGGTGACTCATCAAAGC+CGG | 0.556669 | 4.1:-31799777 | MS.gene003676:CDS |
| GTTATGTTACTTCAGAGGCA+CGG | 0.558356 | 4.1:-31793090 | MS.gene003676:intron |
| TAAGATTCTCTCAAATGCCA+TGG | 0.559603 | 4.1:+31799712 | None:intergenic |
| AGCTCTATATTTCATAATCA+GGG | 0.561148 | 4.1:-31795460 | MS.gene003676:CDS |
| AGAAGGTTCTGCTTATGGCA+TGG | 0.566974 | 4.1:-31792679 | MS.gene003676:CDS |
| ATCAAGTGTATTCTACGAGA+AGG | 0.568187 | 4.1:-31792696 | MS.gene003676:CDS |
| TTGGGACGCAATATGAGCAA+TGG | 0.571382 | 4.1:-31797641 | MS.gene003676:CDS |
| CATTCAGCTCATCATTCCCA+TGG | 0.573747 | 4.1:-31803087 | MS.gene003676:CDS |
| GGTCCAGGATGCATTAAAGC+GGG | 0.574983 | 4.1:-31796860 | MS.gene003676:CDS |
| GTTCTCATTGTTGGACGAAG+AGG | 0.578985 | 4.1:-31792112 | MS.gene003676:CDS |
| CCGTTATGTTTGGTGATTGG+GGG | 0.579476 | 4.1:-31795506 | MS.gene003676:CDS |
| ACAATAGGGCTGATAAAAGC+GGG | 0.580609 | 4.1:-31793936 | MS.gene003676:CDS |
| CTTTGAACTGAAGGAGGCCA+AGG | 0.581588 | 4.1:+31803030 | None:intergenic |
| CACAGAGGAGAGCTTGCAAG+TGG | 0.582414 | 4.1:-31793040 | MS.gene003676:CDS |
| AGGGACCGAAGAGTTCGAAT+GGG | 0.582880 | 4.1:+31794094 | None:intergenic |
| AGCATCTTACCTTCGTCTGT+GGG | 0.583864 | 4.1:-31792911 | MS.gene003676:CDS |
| TCCACTCCAAAAGGGTAAGT+AGG | 0.584976 | 4.1:+31793912 | None:intergenic |
| ATATGAAACGGTGCAGTGAG+CGG | 0.587350 | 4.1:+31803061 | None:intergenic |
| GTATAAGCTTGTTCTGCAGA+AGG | 0.587679 | 4.1:-31801132 | MS.gene003676:intron |
| CCACTTCACAATAATAAGAA+GGG | 0.589126 | 4.1:+31793501 | None:intergenic |
| TTGTTCGTGCGAAAGTAGGT+AGG | 0.590568 | 4.1:+31796772 | None:intergenic |
| TCACAATAATAAGAAGGGAT+AGG | 0.590640 | 4.1:+31793506 | None:intergenic |
| GTGCAGTGAGCGGATTCCAT+GGG | 0.593909 | 4.1:+31803071 | None:intergenic |
| AAGGTCACCGAGATATGAAA+CGG | 0.595393 | 4.1:+31803049 | None:intergenic |
| AATGTGATTATCCTGATAGT+GGG | 0.596141 | 4.1:-31792279 | MS.gene003676:CDS |
| CAGGGTTGCTAAGTATCAAG+AGG | 0.596351 | 4.1:-31795574 | MS.gene003676:CDS |
| TATCTGAATCATCATGGGAG+AGG | 0.601562 | 4.1:-31803171 | None:intergenic |
| CGGGTATCGATTAGCACCAA+AGG | 0.601656 | 4.1:+31798654 | None:intergenic |
| ACTCAAATTCCTCATGACCA+TGG | 0.605900 | 4.1:+31793001 | None:intergenic |
| AAGGTTCTGCTTATGGCATG+GGG | 0.608302 | 4.1:-31792677 | MS.gene003676:CDS |
| GACAAGTAACACTCCAACGG+TGG | 0.608955 | 4.1:+31792236 | None:intergenic |
| TCATGATTCCCATGGTCATG+AGG | 0.609143 | 4.1:-31793010 | MS.gene003676:CDS |
| AACGGCGAAAAGAAATGGAA+AGG | 0.611501 | 4.1:+31795524 | None:intergenic |
| TGTTCCCAGGGAAAAGTCCA+TGG | 0.611905 | 4.1:-31799729 | MS.gene003676:CDS |
| ATACAGGATCCACTCCAAAA+GGG | 0.612978 | 4.1:+31793904 | None:intergenic |
| ACTATTAAGAAATATCACCT+GGG | 0.615293 | 4.1:+31793540 | None:intergenic |
| CATCAAAGCCGGTTAAGCTG+GGG | 0.617056 | 4.1:-31799766 | MS.gene003676:CDS |
| GGAGTGGATCCTGTATGGCA+TGG | 0.625133 | 4.1:-31793897 | MS.gene003676:CDS |
| ATGAGCTGAATGAGTTGCAT+AGG | 0.625380 | 4.1:+31803098 | None:intergenic |
| GTAACTACAGTGAACACAGT+AGG | 0.626949 | 4.1:+31795546 | None:intergenic |
| ACCTAAGGGCCCACAGACGA+AGG | 0.627337 | 4.1:+31792902 | None:intergenic |
| CGCGAACATCGATGACGTTG+AGG | 0.627706 | 4.1:-31801321 | MS.gene003676:intron |
| TCACTCTTCTCAATCTACAC+TGG | 0.628219 | 4.1:-31794144 | MS.gene003676:CDS |
| TGAATCACGCCAACTGAGTG+GGG | 0.632837 | 4.1:-31799935 | MS.gene003676:CDS |
| TTCGTGCGAAAGTAGGTAGG+TGG | 0.632925 | 4.1:+31796775 | None:intergenic |
| CGAAAGTCCAGCATCTATGG+TGG | 0.633783 | 4.1:+31797689 | None:intergenic |
| GAGTCAAATCATGATTCCCA+TGG | 0.635537 | 4.1:-31793018 | MS.gene003676:CDS |
| TAACATCTTTGAACTGAAGG+AGG | 0.637500 | 4.1:+31803024 | None:intergenic |
| TCGGAACGGAATAGATCCAT+CGG | 0.641515 | 4.1:+31803122 | None:intergenic |
| CCAATGGTGAAAAGTTGCAA+CGG | 0.642902 | 4.1:-31801175 | MS.gene003676:CDS |
| CTTGTGAAGATTAAAAGATG+CGG | 0.645930 | 4.1:-31801428 | MS.gene003676:intron |
| GTTCGCGTCAGACTGTGTTG+TGG | 0.646227 | 4.1:+31801337 | None:intergenic |
| TGCATTGCGTCTTCACTGGG+TGG | 0.652317 | 4.1:-31792187 | MS.gene003676:CDS |
| ACAAGCTCAAATGATTTCGG+AGG | 0.653994 | 4.1:-31798611 | MS.gene003676:intron |
| TGAGTTGCATAGGTTCGGAA+CGG | 0.656095 | 4.1:+31803108 | None:intergenic |
| AATGTCTTGTGGCTGAGGGG+TGG | 0.656210 | 4.1:-31797029 | MS.gene003676:CDS |
| GTCGCGGCACACATATGCAG+AGG | 0.657687 | 4.1:+31794074 | None:intergenic |
| TTTGAATCACGCCAACTGAG+TGG | 0.659002 | 4.1:-31799937 | MS.gene003676:CDS |
| CTATTAAGAAATATCACCTG+GGG | 0.659344 | 4.1:+31793541 | None:intergenic |
| ACAATGAGAACGAGAAAGGG+AGG | 0.663287 | 4.1:+31792124 | None:intergenic |
| AGGTCCAGGATGCATTAAAG+CGG | 0.667562 | 4.1:-31796861 | MS.gene003676:CDS |
| ATCATGGGAGAGGTTGCGCG+TGG | 0.672155 | 4.1:-31803161 | MS.gene003676:CDS |
| TTGCACGGCTTTGAGCTGAG+TGG | 0.672652 | 4.1:+31799977 | None:intergenic |
| CATGACAAGTAACACTCCAA+CGG | 0.679909 | 4.1:+31792233 | None:intergenic |
| TAATCGATACCCGTTTGCTG+AGG | 0.681065 | 4.1:-31798644 | MS.gene003676:CDS |
| TCGCGGCACACATATGCAGA+GGG | 0.686651 | 4.1:+31794075 | None:intergenic |
| TTAACTGAGATGAATGCCAA+TGG | 0.714409 | 4.1:-31801191 | MS.gene003676:CDS |
| TTCACCTGCAAGAATCGTCG+CGG | 0.718761 | 4.1:+31794058 | None:intergenic |
| GAACGGAATAGATCCATCGG+AGG | 0.721380 | 4.1:+31803125 | None:intergenic |
| TATGTTACTTCAGAGGCACG+GGG | 0.727829 | 4.1:-31793088 | MS.gene003676:intron |
| AGGTTCTGCTTATGGCATGG+GGG | 0.735145 | 4.1:-31792676 | MS.gene003676:intron |
| GGAACATGTAGATCATTACG+TGG | 0.738853 | 4.1:+31793452 | None:intergenic |
| TATTAAGAAATATCACCTGG+GGG | 0.742892 | 4.1:+31793542 | None:intergenic |
| TGCACCACTTCCAAACACAG+AGG | 0.767989 | 4.1:-31793055 | MS.gene003676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 31792098 | 31803180 | 31792098 | ID=MS.gene003676 |
| chr4.1 | mRNA | 31792098 | 31803180 | 31792098 | ID=MS.gene003676.t1;Parent=MS.gene003676 |
| chr4.1 | exon | 31803028 | 31803180 | 31803028 | ID=MS.gene003676.t1.exon1;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31803028 | 31803180 | 31803028 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31802222 | 31802266 | 31802222 | ID=MS.gene003676.t1.exon2;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31802222 | 31802266 | 31802222 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31801322 | 31801441 | 31801322 | ID=MS.gene003676.t1.exon3;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31801322 | 31801441 | 31801322 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31801133 | 31801240 | 31801133 | ID=MS.gene003676.t1.exon4;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31801133 | 31801240 | 31801133 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31799903 | 31800013 | 31799903 | ID=MS.gene003676.t1.exon5;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31799903 | 31800013 | 31799903 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31799631 | 31799804 | 31799631 | ID=MS.gene003676.t1.exon6;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31799631 | 31799804 | 31799631 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31798612 | 31798749 | 31798612 | ID=MS.gene003676.t1.exon7;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31798612 | 31798749 | 31798612 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31797632 | 31797739 | 31797632 | ID=MS.gene003676.t1.exon8;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31797632 | 31797739 | 31797632 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31797005 | 31797112 | 31797005 | ID=MS.gene003676.t1.exon9;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31797005 | 31797112 | 31797005 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31796733 | 31796881 | 31796733 | ID=MS.gene003676.t1.exon10;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31796733 | 31796881 | 31796733 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31795440 | 31795593 | 31795440 | ID=MS.gene003676.t1.exon11;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31795440 | 31795593 | 31795440 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31794063 | 31794223 | 31794063 | ID=MS.gene003676.t1.exon12;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31794063 | 31794223 | 31794063 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31793762 | 31793968 | 31793762 | ID=MS.gene003676.t1.exon13;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31793762 | 31793968 | 31793762 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31793393 | 31793576 | 31793393 | ID=MS.gene003676.t1.exon14;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31793393 | 31793576 | 31793393 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31793186 | 31793269 | 31793186 | ID=MS.gene003676.t1.exon15;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31793186 | 31793269 | 31793186 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31792904 | 31793097 | 31792904 | ID=MS.gene003676.t1.exon16;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31792904 | 31793097 | 31792904 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31792677 | 31792736 | 31792677 | ID=MS.gene003676.t1.exon17;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31792677 | 31792736 | 31792677 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| chr4.1 | exon | 31792098 | 31792308 | 31792098 | ID=MS.gene003676.t1.exon18;Parent=MS.gene003676.t1 |
| chr4.1 | CDS | 31792098 | 31792308 | 31792098 | ID=cds.MS.gene003676.t1;Parent=MS.gene003676.t1 |
| Gene Sequence |
| Protein sequence |
