Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50737.t1 | XP_003607000.1 | 98.8 | 822 | 10 | 0 | 1 | 822 | 1 | 822 | 0.00E+00 | 1587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50737.t1 | Q9SJT7 | 78.5 | 809 | 172 | 2 | 13 | 820 | 14 | 821 | 0.0e+00 | 1249.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50737.t1 | G7JIL4 | 98.8 | 822 | 10 | 0 | 1 | 822 | 1 | 822 | 0.0e+00 | 1587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50737 | MS.gene08574 | PPI |
| MS.gene028764 | MS.gene50737 | PPI |
| MS.gene003676 | MS.gene50737 | PPI |
| MS.gene50737 | MS.gene043556 | PPI |
| MS.gene50737 | MS.gene31337 | PPI |
| MS.gene50737 | MS.gene004145 | PPI |
| MS.gene50737 | MS.gene23322 | PPI |
| MS.gene043556 | MS.gene50737 | PPI |
| MS.gene50737 | MS.gene65268 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50737.t1 | MTR_4g071070 | 99.027 | 822 | 8 | 0 | 1 | 822 | 1 | 822 | 0.0 | 1694 |
| MS.gene50737.t1 | MTR_3g112500 | 71.429 | 721 | 204 | 2 | 14 | 732 | 1 | 721 | 0.0 | 1074 |
| MS.gene50737.t1 | MTR_4g061090 | 62.315 | 812 | 303 | 2 | 12 | 820 | 9 | 820 | 0.0 | 1057 |
| MS.gene50737.t1 | MTR_2g093210 | 62.639 | 811 | 300 | 3 | 12 | 820 | 9 | 818 | 0.0 | 1053 |
| MS.gene50737.t1 | MTR_2g093210 | 61.997 | 771 | 290 | 3 | 52 | 820 | 9 | 778 | 0.0 | 992 |
| MS.gene50737.t1 | MTR_2g093210 | 61.035 | 657 | 253 | 3 | 12 | 666 | 9 | 664 | 0.0 | 834 |
| MS.gene50737.t1 | MTR_2g093210 | 56.487 | 501 | 215 | 3 | 12 | 510 | 9 | 508 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50737.t1 | AT2G21410 | 77.970 | 808 | 176 | 2 | 14 | 820 | 15 | 821 | 0.0 | 1307 |
| MS.gene50737.t1 | AT4G39080 | 78.121 | 809 | 174 | 3 | 14 | 820 | 14 | 821 | 0.0 | 1303 |
| MS.gene50737.t1 | AT2G28520 | 61.235 | 810 | 307 | 4 | 12 | 815 | 9 | 817 | 0.0 | 1006 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATGGACCTGCAGGTTTC+TGG | 0.135416 | 4.3:+34220981 | MS.gene50737:intron |
| CCGGTCACCGACCCTGTTTC+TGG | 0.186189 | 4.3:+34219064 | MS.gene50737:CDS |
| CCCTTTCTCGTTCTCATTGT+TGG | 0.201142 | 4.3:+34225916 | MS.gene50737:CDS |
| CGCCGTTATGTTTGGTGATT+GGG | 0.206487 | 4.3:+34223196 | MS.gene50737:CDS |
| TTTCAAGGAGCAAATGTTTA+AGG | 0.222273 | 4.3:+34217316 | MS.gene50737:CDS |
| ATGAAAATGTCAATTCTTCT+TGG | 0.225562 | 4.3:+34224202 | MS.gene50737:CDS |
| GTTAACTTGCTGGAAAATAT+TGG | 0.239254 | 4.3:+34221053 | MS.gene50737:CDS |
| ATGTTGCTTCTTCAAAATAA+AGG | 0.244060 | 4.3:-34224849 | None:intergenic |
| CTACGAGAAGGTTCTGCTTA+TGG | 0.275406 | 4.3:+34225357 | MS.gene50737:CDS |
| CCTGAGCCCAACCGATGATT+TGG | 0.278131 | 4.3:+34224608 | MS.gene50737:CDS |
| GCGGGTCCTACTTACCCTTT+TGG | 0.280511 | 4.3:+34224121 | MS.gene50737:CDS |
| TGCAAGCTCTCCTCTGTGTT+TGG | 0.280630 | 4.3:-34224996 | None:intergenic |
| CGCCCTCGTAAAATTTGTTT+TGG | 0.289401 | 4.3:-34225877 | None:intergenic |
| TCGCCGTTATGTTTGGTGAT+TGG | 0.291200 | 4.3:+34223195 | MS.gene50737:CDS |
| TATGGAAGCACCTTTATTAC+AGG | 0.310093 | 4.3:+34218794 | MS.gene50737:CDS |
| GACATCACAGCAATGACTTT+TGG | 0.313484 | 4.3:+34223845 | MS.gene50737:CDS |
| TGCATGCATTGCGTCTTCAC+TGG | 0.315321 | 4.3:+34225846 | MS.gene50737:CDS |
| CAGCTCTATATTTCATAATC+AGG | 0.318492 | 4.3:+34223243 | MS.gene50737:CDS |
| GGCGAGAACCAACTCTTTGC+TGG | 0.320495 | 4.3:+34224630 | MS.gene50737:CDS |
| GACTGTGTTGTGGAACCTTT+TGG | 0.334580 | 4.3:-34217350 | None:intergenic |
| CTCATCAAAGCCGGTTAAGC+TGG | 0.338126 | 4.3:+34218934 | MS.gene50737:CDS |
| TGTTGCTTCTTCAAAATAAA+GGG | 0.342377 | 4.3:-34224848 | None:intergenic |
| CATCAAGGCTTAGCATGTTA+AGG | 0.343378 | 4.3:-34221655 | None:intergenic |
| CCAACTGAGTGGGGAATCTA+TGG | 0.347616 | 4.3:+34218776 | MS.gene50737:CDS |
| TTCTTCAAAATAAAGGGTTT+TGG | 0.353982 | 4.3:-34224842 | None:intergenic |
| TCTACTTGGTCCTGTAATAA+AGG | 0.355890 | 4.3:-34218804 | None:intergenic |
| TTAACTTGCTGGAAAATATT+GGG | 0.362742 | 4.3:+34221054 | MS.gene50737:CDS |
| AAAACAAGCTCAAATGATTT+CGG | 0.364391 | 4.3:+34220079 | MS.gene50737:CDS |
| ATATTTCTTAATAGTCTCTT+CGG | 0.372838 | 4.3:+34224507 | MS.gene50737:CDS |
| ATATGAGCAATGGAATCTTT+TGG | 0.375775 | 4.3:+34221082 | MS.gene50737:CDS |
| TAATGTGATTATCCTGATAG+TGG | 0.381389 | 4.3:+34225757 | MS.gene50737:CDS |
| GGTATGCAAAACTTGCAAAA+TGG | 0.383391 | 4.3:-34221909 | None:intergenic |
| CTGAGCCCAACCGATGATTT+GGG | 0.389999 | 4.3:+34224609 | MS.gene50737:CDS |
| GTGCGAAAGTCCAGCATCTA+TGG | 0.395372 | 4.3:-34221027 | None:intergenic |
| CATGTTAAGGGTATGGTGAA+TGG | 0.398499 | 4.3:-34221642 | None:intergenic |
| CTGAAAATATGCGACGCCTT+TGG | 0.399369 | 4.3:+34220023 | MS.gene50737:CDS |
| TATTTCTTAATAGTCTCTTC+GGG | 0.400389 | 4.3:+34224508 | MS.gene50737:CDS |
| TGCAGGGATTCTACAACAAT+AGG | 0.402521 | 4.3:+34224088 | MS.gene50737:intron |
| TGGCCGGTGTTGCTGTGCCC+TGG | 0.402596 | 4.3:+34224810 | MS.gene50737:CDS |
| AACATAACGGCGAAAAGAAA+TGG | 0.408551 | 4.3:-34223185 | None:intergenic |
| TCTGTCCCATTCGAACTCTT+CGG | 0.408774 | 4.3:+34223938 | MS.gene50737:CDS |
| ATCAAGGCTTAGCATGTTAA+GGG | 0.409951 | 4.3:-34221654 | None:intergenic |
| CAAGGAATTATAGACTCATA+TGG | 0.413718 | 4.3:+34221983 | MS.gene50737:CDS |
| TACCCGTTTGCTGAGGAACT+TGG | 0.417368 | 4.3:+34220056 | MS.gene50737:CDS |
| GGAGAGGTTGCGCGTGGAGG+TGG | 0.419479 | 4.3:+34215554 | MS.gene50737:CDS |
| CTCTTTGCTGCTCAATTGCA+CGG | 0.421919 | 4.3:-34218740 | None:intergenic |
| AAACAATGAGACCCACTATC+AGG | 0.423533 | 4.3:-34225769 | None:intergenic |
| TTCGCACCGAGTTAACTTGC+TGG | 0.428744 | 4.3:+34221043 | MS.gene50737:CDS |
| AAATTTACGTCTTCGTATCA+AGG | 0.430553 | 4.3:+34221965 | MS.gene50737:CDS |
| CACACTATAGAATTTGTACT+TGG | 0.436117 | 4.3:+34225092 | MS.gene50737:CDS |
| TTCTCGCCCAAATCATCGGT+TGG | 0.443147 | 4.3:-34224615 | None:intergenic |
| GCTGCATAAGTGCGTTGAAA+AGG | 0.445824 | 4.3:-34216472 | None:intergenic |
| ACCTTCGTCTGTGGGCCCTT+AGG | 0.448450 | 4.3:+34225138 | MS.gene50737:CDS |
| GCAGACTGCTGTTGAGGATC+CGG | 0.451510 | 4.3:+34219045 | MS.gene50737:CDS |
| CATACAGGATCCACTCCAAA+AGG | 0.451529 | 4.3:-34224136 | None:intergenic |
| TTCCAAGTTCCTCAGCAAAC+GGG | 0.454395 | 4.3:-34220058 | None:intergenic |
| CTCTCCTCTGTGTTTGGAAG+TGG | 0.454642 | 4.3:-34224990 | None:intergenic |
| CGACCCTGTTTCTGGAGAAA+AGG | 0.459926 | 4.3:+34219072 | MS.gene50737:CDS |
| AAAAGAACTCATTATAGATC+AGG | 0.460264 | 4.3:-34223916 | None:intergenic |
| CTGCATAAGTGCGTTGAAAA+GGG | 0.460346 | 4.3:-34216471 | None:intergenic |
| CACTGCACCGTTTCATATCT+CGG | 0.462359 | 4.3:+34215653 | MS.gene50737:CDS |
| CGTTGGAGTGTTACTTGTCA+TGG | 0.463138 | 4.3:+34225805 | MS.gene50737:CDS |
| TCAACGCACTTATGCAGCTC+AGG | 0.466112 | 4.3:+34216477 | MS.gene50737:CDS |
| AAGGCAGGTGTTTCACCAAA+AGG | 0.468071 | 4.3:+34217335 | MS.gene50737:CDS |
| GCATGCATTGCGTCTTCACT+GGG | 0.470596 | 4.3:+34225847 | MS.gene50737:CDS |
| TCCAACAATGAGAACGAGAA+AGG | 0.475913 | 4.3:-34225917 | None:intergenic |
| CCAAATCATCGGTTGGGCTC+AGG | 0.478517 | 4.3:-34224608 | None:intergenic |
| AAATTTGTTCGTGCGAAAGT+AGG | 0.483894 | 4.3:-34221948 | None:intergenic |
| TTTCCAAGTTCCTCAGCAAA+CGG | 0.485589 | 4.3:-34220059 | None:intergenic |
| GACTATTAAGAAATATCACC+TGG | 0.487628 | 4.3:-34224500 | None:intergenic |
| TAAGATTCTTTCAAATGCCA+TGG | 0.490966 | 4.3:-34218990 | None:intergenic |
| CATCCAGGGCACAGCAACAC+CGG | 0.491441 | 4.3:-34224813 | None:intergenic |
| CCAGAAACAGGGTCGGTGAC+CGG | 0.493388 | 4.3:-34219064 | None:intergenic |
| GATCATTACGTGGTACAAAT+CGG | 0.493854 | 4.3:-34224577 | None:intergenic |
| CAGCCCGCTTTAATGCATCC+TGG | 0.494663 | 4.3:-34221859 | None:intergenic |
| GAAGGTTCTGCTTATGGCAT+GGG | 0.496052 | 4.3:+34225363 | MS.gene50737:CDS |
| CTGAATGAGTTGCATAGGTT+CGG | 0.496944 | 4.3:-34215606 | None:intergenic |
| TGCATTAAAGCGGGCTGCAA+AGG | 0.498340 | 4.3:+34221865 | MS.gene50737:CDS |
| TTATGTTACTTCAGAGGCAC+GGG | 0.498347 | 4.3:+34224952 | MS.gene50737:intron |
| CCCTGCTTATTATTGTGAAG+TGG | 0.498675 | 4.3:+34224538 | MS.gene50737:CDS |
| GGCTTAGCATGTTAAGGGTA+TGG | 0.500989 | 4.3:-34221649 | None:intergenic |
| TCTCGCCCAAATCATCGGTT+GGG | 0.504079 | 4.3:-34224614 | None:intergenic |
| AACAATAGGGCTGATAAAAG+CGG | 0.510498 | 4.3:+34224102 | MS.gene50737:CDS |
| TCATCAAAGCCGGTTAAGCT+GGG | 0.512461 | 4.3:+34218935 | MS.gene50737:CDS |
| TACTAACATCTTTGAACTGA+AGG | 0.513902 | 4.3:-34215688 | None:intergenic |
| GTTTCATATCTCGGTGACCT+TGG | 0.514062 | 4.3:+34215662 | MS.gene50737:CDS |
| CTACGTGTACCATGCCATAC+AGG | 0.514112 | 4.3:-34224151 | None:intergenic |
| AAGGAGCAAATGTTTAAGGC+AGG | 0.518157 | 4.3:+34217320 | MS.gene50737:CDS |
| AATAGCTCATTATAATTCCA+AGG | 0.518320 | 4.3:-34224240 | None:intergenic |
| ACCACTTCACAATAATAAGC+AGG | 0.523918 | 4.3:-34224539 | None:intergenic |
| GATTAAAAGATGCGGAGAGA+TGG | 0.524538 | 4.3:+34217277 | MS.gene50737:intron |
| AAGGAATTATAGACTCATAT+GGG | 0.526737 | 4.3:+34221984 | MS.gene50737:CDS |
| GCCGTTATGTTTGGTGATTG+GGG | 0.527670 | 4.3:+34223197 | MS.gene50737:CDS |
| TGTGTCGCGACGATTCTTGC+AGG | 0.528402 | 4.3:+34223975 | MS.gene50737:CDS |
| GGTGCAGTGAGCGGATTCCA+TGG | 0.529547 | 4.3:-34215639 | None:intergenic |
| CCATAGATTCCCCACTCAGT+TGG | 0.529914 | 4.3:-34218776 | None:intergenic |
| GTAGGTAGGTGGTGACTCCC+TGG | 0.530305 | 4.3:-34221930 | None:intergenic |
| TTGAATCACGCCAACTGAGT+GGG | 0.533204 | 4.3:+34218766 | MS.gene50737:CDS |
| AGGTGGTTGTTGTCCTCCGA+TGG | 0.533393 | 4.3:+34215571 | MS.gene50737:CDS |
| GGAGTTGCTCAAATGAACCT+TGG | 0.535111 | 4.3:+34224223 | MS.gene50737:CDS |
| CTCAAATTCCTCATGACCAT+GGG | 0.535664 | 4.3:-34225039 | None:intergenic |
| GCAGGGATTCTACAACAATA+GGG | 0.536043 | 4.3:+34224089 | MS.gene50737:intron |
| ATCTTATTTCGTGCTACTAG+AGG | 0.536230 | 4.3:+34219007 | MS.gene50737:CDS |
| CAGCATCTTACCTTCGTCTG+TGG | 0.537798 | 4.3:+34225129 | MS.gene50737:CDS |
| TTTGAGGCAGACTGCTGTTG+AGG | 0.538625 | 4.3:+34219039 | MS.gene50737:CDS |
| TTGAAGACCACCATAGATGC+TGG | 0.539703 | 4.3:+34221017 | MS.gene50737:CDS |
| GGAGAAGAAACTTTCTAGCC+AGG | 0.540506 | 4.3:+34223265 | MS.gene50737:CDS |
| GCATGGAATATGTTTACTGC+TGG | 0.541816 | 4.3:+34223220 | MS.gene50737:CDS |
| TTGGTTCTCGCCCAAATCAT+CGG | 0.545089 | 4.3:-34224619 | None:intergenic |
| ATTATTGTGAAGTGGTGCAC+GGG | 0.545515 | 4.3:+34224546 | MS.gene50737:CDS |
| TATTATTGTGAAGTGGTGCA+CGG | 0.547521 | 4.3:+34224545 | MS.gene50737:CDS |
| TTCAAACTCATAGGTGAGGA+AGG | 0.549691 | 4.3:+34221613 | MS.gene50737:intron |
| ATGGGAGAGGTTGCGCGTGG+AGG | 0.550555 | 4.3:+34215551 | MS.gene50737:CDS |
| TTTAGCAGGTCTTGTTCCCA+GGG | 0.552250 | 4.3:+34218961 | MS.gene50737:CDS |
| TGTGTTTGGAAGTGGTGCAT+AGG | 0.552543 | 4.3:-34224982 | None:intergenic |
| GAGGGACCGAAGAGTTCGAA+TGG | 0.552948 | 4.3:-34223944 | None:intergenic |
| CCAACAATGAGAACGAGAAA+GGG | 0.554263 | 4.3:-34225916 | None:intergenic |
| ATCAGGTGACTCATCAAAGC+CGG | 0.556669 | 4.3:+34218925 | MS.gene50737:CDS |
| ATCTAGTGTATTCTACGAGA+AGG | 0.557378 | 4.3:+34225345 | MS.gene50737:CDS |
| GTTATGTTACTTCAGAGGCA+CGG | 0.558356 | 4.3:+34224951 | MS.gene50737:intron |
| AGCTCTATATTTCATAATCA+GGG | 0.561148 | 4.3:+34223244 | MS.gene50737:CDS |
| AGAAGGTTCTGCTTATGGCA+TGG | 0.566974 | 4.3:+34225362 | MS.gene50737:CDS |
| TTGGGACGCAATATGAGCAA+TGG | 0.571382 | 4.3:+34221072 | MS.gene50737:CDS |
| CATTCAGCTCATCATTCCCA+TGG | 0.573747 | 4.3:+34215622 | MS.gene50737:CDS |
| GGTCCAGGATGCATTAAAGC+GGG | 0.574983 | 4.3:+34221856 | MS.gene50737:intron |
| GTTCTCATTGTTGGACGAAG+AGG | 0.578985 | 4.3:+34225925 | MS.gene50737:CDS |
| CCGTTATGTTTGGTGATTGG+GGG | 0.579476 | 4.3:+34223198 | MS.gene50737:CDS |
| ACAATAGGGCTGATAAAAGC+GGG | 0.580609 | 4.3:+34224103 | MS.gene50737:CDS |
| CTTTGAACTGAAGGAGGCCA+AGG | 0.581588 | 4.3:-34215679 | None:intergenic |
| CACAGAGGAGAGCTTGCAAG+TGG | 0.582414 | 4.3:+34225001 | MS.gene50737:CDS |
| AGGGACCGAAGAGTTCGAAT+GGG | 0.582880 | 4.3:-34223943 | None:intergenic |
| AGCATCTTACCTTCGTCTGT+GGG | 0.583864 | 4.3:+34225130 | MS.gene50737:CDS |
| TCCACTCCAAAAGGGTAAGT+AGG | 0.584976 | 4.3:-34224127 | None:intergenic |
| GTAACTACAGTGAACACAGT+TGG | 0.585810 | 4.3:-34223158 | None:intergenic |
| ATATGAAACGGTGCAGTGAG+CGG | 0.587350 | 4.3:-34215648 | None:intergenic |
| GTATAAGCTTGTTCTGCAGA+AGG | 0.587679 | 4.3:+34217565 | MS.gene50737:CDS |
| TTGTTCGTGCGAAAGTAGGT+AGG | 0.590568 | 4.3:-34221944 | None:intergenic |
| GTGCAGTGAGCGGATTCCAT+GGG | 0.593909 | 4.3:-34215638 | None:intergenic |
| AAGGTCACCGAGATATGAAA+CGG | 0.595393 | 4.3:-34215660 | None:intergenic |
| AATGTGATTATCCTGATAGT+GGG | 0.596141 | 4.3:+34225758 | MS.gene50737:CDS |
| TCACAATAATAAGCAGGGAT+AGG | 0.599215 | 4.3:-34224533 | None:intergenic |
| TATCTGAATCATCATGGGAG+AGG | 0.601562 | 4.3:+34215538 | None:intergenic |
| CGGGTATCGATTAGCACCAA+AGG | 0.601656 | 4.3:-34220039 | None:intergenic |
| ACTCAAATTCCTCATGACCA+TGG | 0.605900 | 4.3:-34225040 | None:intergenic |
| AAGGTTCTGCTTATGGCATG+GGG | 0.608302 | 4.3:+34225364 | MS.gene50737:CDS |
| GACAAGTAACACTCCAACGG+TGG | 0.608955 | 4.3:-34225801 | None:intergenic |
| TCATGATTCCCATGGTCATG+AGG | 0.609143 | 4.3:+34225031 | MS.gene50737:CDS |
| AACGGCGAAAAGAAATGGAA+AGG | 0.611501 | 4.3:-34223180 | None:intergenic |
| TGTTCCCAGGGAAAAGTCCA+TGG | 0.611905 | 4.3:+34218973 | MS.gene50737:CDS |
| ATACAGGATCCACTCCAAAA+GGG | 0.612978 | 4.3:-34224135 | None:intergenic |
| ACTATTAAGAAATATCACCT+GGG | 0.615293 | 4.3:-34224499 | None:intergenic |
| CATCAAAGCCGGTTAAGCTG+GGG | 0.617056 | 4.3:+34218936 | MS.gene50737:CDS |
| GGAGTGGATCCTGTATGGCA+TGG | 0.625133 | 4.3:+34224142 | MS.gene50737:CDS |
| ATGAGCTGAATGAGTTGCAT+AGG | 0.625380 | 4.3:-34215611 | None:intergenic |
| ACCTAAGGGCCCACAGACGA+AGG | 0.627337 | 4.3:-34225139 | None:intergenic |
| TCACTCTTCTCAATCTACAC+TGG | 0.628219 | 4.3:+34223893 | MS.gene50737:CDS |
| TGAATCACGCCAACTGAGTG+GGG | 0.632837 | 4.3:+34218767 | MS.gene50737:CDS |
| TTCGTGCGAAAGTAGGTAGG+TGG | 0.632925 | 4.3:-34221941 | None:intergenic |
| CGAAAGTCCAGCATCTATGG+TGG | 0.633783 | 4.3:-34221024 | None:intergenic |
| GAGTCAAATCATGATTCCCA+TGG | 0.635537 | 4.3:+34225023 | MS.gene50737:CDS |
| TAACATCTTTGAACTGAAGG+AGG | 0.637500 | 4.3:-34215685 | None:intergenic |
| TCGGAACGGAATAGATCCAT+CGG | 0.641515 | 4.3:-34215587 | None:intergenic |
| CCACTTCACAATAATAAGCA+GGG | 0.642670 | 4.3:-34224538 | None:intergenic |
| CCAATGGTGAAAAGTTGCAA+CGG | 0.642902 | 4.3:+34217522 | MS.gene50737:CDS |
| CTTGTGAAGATTAAAAGATG+CGG | 0.645930 | 4.3:+34217269 | MS.gene50737:intron |
| TGCATTGCGTCTTCACTGGG+TGG | 0.652317 | 4.3:+34225850 | MS.gene50737:CDS |
| CGTGAACATCGATGACGTTG+AGG | 0.653743 | 4.3:+34217376 | MS.gene50737:CDS |
| ACAAGCTCAAATGATTTCGG+AGG | 0.653994 | 4.3:+34220082 | MS.gene50737:CDS |
| TGAGTTGCATAGGTTCGGAA+CGG | 0.656095 | 4.3:-34215601 | None:intergenic |
| AATGTCTTGTGGCTGAGGGG+TGG | 0.656210 | 4.3:+34221687 | MS.gene50737:CDS |
| GTCGCGACACACATATGCAG+AGG | 0.657687 | 4.3:-34223963 | None:intergenic |
| TTTGAATCACGCCAACTGAG+TGG | 0.659002 | 4.3:+34218765 | MS.gene50737:CDS |
| CTATTAAGAAATATCACCTG+GGG | 0.659344 | 4.3:-34224498 | None:intergenic |
| ACAATGAGAACGAGAAAGGG+AGG | 0.663287 | 4.3:-34225913 | None:intergenic |
| AGGTCCAGGATGCATTAAAG+CGG | 0.667562 | 4.3:+34221855 | MS.gene50737:intron |
| ATCATGGGAGAGGTTGCGCG+TGG | 0.672155 | 4.3:+34215548 | None:intergenic |
| TTGCACGGCTTTGAGCTGAG+TGG | 0.672652 | 4.3:-34218725 | None:intergenic |
| GTTCACGTCAGACTGTGTTG+TGG | 0.673215 | 4.3:-34217360 | None:intergenic |
| TCGCGACACACATATGCAGA+GGG | 0.679900 | 4.3:-34223962 | None:intergenic |
| CATGACAAGTAACACTCCAA+CGG | 0.679909 | 4.3:-34225804 | None:intergenic |
| TAATCGATACCCGTTTGCTG+AGG | 0.681065 | 4.3:+34220049 | MS.gene50737:CDS |
| TTAACTGAGATGAATGCCAA+TGG | 0.714409 | 4.3:+34217506 | MS.gene50737:CDS |
| GAACGGAATAGATCCATCGG+AGG | 0.721380 | 4.3:-34215584 | None:intergenic |
| TATGTTACTTCAGAGGCACG+GGG | 0.727829 | 4.3:+34224953 | MS.gene50737:intron |
| AGGTTCTGCTTATGGCATGG+GGG | 0.735145 | 4.3:+34225365 | MS.gene50737:CDS |
| GGAACATGTAGATCATTACG+TGG | 0.738853 | 4.3:-34224587 | None:intergenic |
| TATTAAGAAATATCACCTGG+GGG | 0.742892 | 4.3:-34224497 | None:intergenic |
| TGCACCACTTCCAAACACAG+AGG | 0.767989 | 4.3:+34224986 | MS.gene50737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34215551 | 34225961 | 34215551 | ID=MS.gene50737 |
| chr4.3 | mRNA | 34215551 | 34225961 | 34215551 | ID=MS.gene50737.t1;Parent=MS.gene50737 |
| chr4.3 | exon | 34215551 | 34215703 | 34215551 | ID=MS.gene50737.t1.exon1;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34215551 | 34215703 | 34215551 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34216454 | 34216498 | 34216454 | ID=MS.gene50737.t1.exon2;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34216454 | 34216498 | 34216454 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34217278 | 34217397 | 34217278 | ID=MS.gene50737.t1.exon3;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34217278 | 34217397 | 34217278 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34217479 | 34217586 | 34217479 | ID=MS.gene50737.t1.exon4;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34217479 | 34217586 | 34217479 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34218711 | 34218821 | 34218711 | ID=MS.gene50737.t1.exon5;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34218711 | 34218821 | 34218711 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34218920 | 34219093 | 34218920 | ID=MS.gene50737.t1.exon6;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34218920 | 34219093 | 34218920 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34219966 | 34220103 | 34219966 | ID=MS.gene50737.t1.exon7;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34219966 | 34220103 | 34219966 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34220996 | 34221103 | 34220996 | ID=MS.gene50737.t1.exon8;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34220996 | 34221103 | 34220996 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34221626 | 34221733 | 34221626 | ID=MS.gene50737.t1.exon9;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34221626 | 34221733 | 34221626 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34221857 | 34222005 | 34221857 | ID=MS.gene50737.t1.exon10;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34221857 | 34222005 | 34221857 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34223133 | 34223286 | 34223133 | ID=MS.gene50737.t1.exon11;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34223133 | 34223286 | 34223133 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34223836 | 34223996 | 34223836 | ID=MS.gene50737.t1.exon12;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34223836 | 34223996 | 34223836 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34224093 | 34224299 | 34224093 | ID=MS.gene50737.t1.exon13;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34224093 | 34224299 | 34224093 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34224485 | 34224668 | 34224485 | ID=MS.gene50737.t1.exon14;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34224485 | 34224668 | 34224485 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34224794 | 34224877 | 34224794 | ID=MS.gene50737.t1.exon15;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34224794 | 34224877 | 34224794 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34224966 | 34225159 | 34224966 | ID=MS.gene50737.t1.exon16;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34224966 | 34225159 | 34224966 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34225327 | 34225386 | 34225327 | ID=MS.gene50737.t1.exon17;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34225327 | 34225386 | 34225327 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| chr4.3 | exon | 34225751 | 34225961 | 34225751 | ID=MS.gene50737.t1.exon18;Parent=MS.gene50737.t1 |
| chr4.3 | CDS | 34225751 | 34225961 | 34225751 | ID=cds.MS.gene50737.t1;Parent=MS.gene50737.t1 |
| Gene Sequence |
| Protein sequence |
