Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004148.t1 | XP_003606501.2 | 97 | 1058 | 32 | 0 | 1 | 1058 | 1 | 1058 | 0.00E+00 | 1813.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004148.t1 | Q9FII7 | 52.2 | 1056 | 502 | 2 | 5 | 1058 | 3 | 1057 | 1.3e-289 | 997.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004148.t1 | G7JRH6 | 97.0 | 1058 | 32 | 0 | 1 | 1058 | 1 | 1058 | 0.0e+00 | 1813.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95862 | MS.gene004148 | PPI |
| MS.gene004148 | MS.gene058555 | PPI |
| MS.gene004148 | MS.gene62647 | PPI |
| MS.gene004148 | MS.gene015611 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004148.t1 | MTR_4g061050 | 97.164 | 1058 | 30 | 0 | 1 | 1058 | 1 | 1058 | 0.0 | 2122 |
| MS.gene004148.t1 | MTR_4g036760 | 79.792 | 1059 | 213 | 1 | 1 | 1058 | 1 | 1059 | 0.0 | 1730 |
| MS.gene004148.t1 | MTR_5g036370 | 21.402 | 1084 | 683 | 37 | 21 | 1036 | 22 | 1004 | 1.19e-22 | 105 |
| MS.gene004148.t1 | MTR_4g115050 | 20.294 | 1089 | 688 | 39 | 22 | 1036 | 11 | 993 | 4.33e-22 | 103 |
| MS.gene004148.t1 | MTR_1g018410 | 60.294 | 68 | 21 | 2 | 159 | 224 | 8 | 71 | 1.12e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004148.t1 | AT5G07660 | 54.808 | 1040 | 467 | 2 | 21 | 1058 | 20 | 1058 | 0.0 | 1119 |
| MS.gene004148.t1 | AT5G61460 | 54.820 | 1058 | 471 | 3 | 5 | 1058 | 3 | 1057 | 0.0 | 1104 |
| MS.gene004148.t1 | AT5G15920 | 24.922 | 321 | 193 | 11 | 13 | 318 | 12 | 299 | 1.55e-11 | 69.3 |
Find 203 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATCCATTGCTCTAAA+TGG | 0.155010 | 4.2:-43110519 | None:intergenic |
| AAACAAGAGTTTACCTTTAT+AGG | 0.169470 | 4.2:-43104143 | None:intergenic |
| GGATGAATTTGATGTCTTTA+TGG | 0.190524 | 4.2:+43110533 | MS.gene004148:CDS |
| ATCTCAAGCATCAGCTTTCT+TGG | 0.206916 | 4.2:+43109452 | MS.gene004148:CDS |
| TGCTTCTAAGAAGCTAAATT+TGG | 0.210483 | 4.2:+43105276 | MS.gene004148:CDS |
| AAGAGATTATACTTCCATTT+TGG | 0.225795 | 4.2:-43091188 | None:intergenic |
| CATACGAGTCTAGTTCTTCT+AGG | 0.228029 | 4.2:+43091055 | MS.gene004148:CDS |
| CGAGACACAAGGGGACTTTC+AGG | 0.235502 | 4.2:+43109850 | MS.gene004148:CDS |
| ATTGATGGATGGTTTGTATT+AGG | 0.237226 | 4.2:-43101507 | None:intergenic |
| ATCCTCATGATCAGATTTAA+TGG | 0.238416 | 4.2:+43109557 | MS.gene004148:intron |
| TATATTTACTTTCATGATCT+TGG | 0.256816 | 4.2:-43100307 | None:intergenic |
| ATAACATCACCATATATTTC+AGG | 0.282347 | 4.2:-43092787 | None:intergenic |
| ACTGCAGGATAATGTTAAAA+AGG | 0.286872 | 4.2:+43107976 | MS.gene004148:intron |
| ATTTCATTAAAACTGGTTCT+AGG | 0.288257 | 4.2:+43092324 | MS.gene004148:CDS |
| GTAAAGACCTCCTTCAGATT+TGG | 0.299303 | 4.2:-43102832 | None:intergenic |
| AAAGGTCCTGCATGATATTA+AGG | 0.300329 | 4.2:+43106510 | MS.gene004148:CDS |
| GTCATCCTGACAGCAAATTA+TGG | 0.302156 | 4.2:-43108002 | None:intergenic |
| TGCCTCCCATTGGTCCAATT+GGG | 0.304442 | 4.2:+43100531 | MS.gene004148:CDS |
| TTCGAAACTCTAAAGCATTA+TGG | 0.308827 | 4.2:-43109402 | None:intergenic |
| ATGCCTCCCATTGGTCCAAT+TGG | 0.309677 | 4.2:+43100530 | MS.gene004148:CDS |
| CCGAATCAATTGATGATCTA+AGG | 0.311139 | 4.2:+43108261 | MS.gene004148:CDS |
| GAATAACAAAGATAAATTTA+AGG | 0.322875 | 4.2:+43095315 | MS.gene004148:CDS |
| ATTTCAGCACTGATTTGCTC+TGG | 0.324777 | 4.2:-43108058 | None:intergenic |
| CAGCTCTGTTTGATGTATCT+TGG | 0.325637 | 4.2:-43109825 | None:intergenic |
| TTGAAGGATTTCATTAAAAC+TGG | 0.329937 | 4.2:+43092317 | MS.gene004148:CDS |
| AATCTCATCACTGGCCAAAA+TGG | 0.333927 | 4.2:+43091174 | MS.gene004148:CDS |
| AGAGATGTCATCAAAGGTTT+AGG | 0.334447 | 4.2:+43100507 | MS.gene004148:CDS |
| AGCTCTGTTTGATGTATCTT+GGG | 0.341882 | 4.2:-43109824 | None:intergenic |
| TTCCTCCATGTCAGATTCTT+CGG | 0.343251 | 4.2:-43099813 | None:intergenic |
| GGGAAGCAGATCACTGCTTT+TGG | 0.344550 | 4.2:+43100449 | MS.gene004148:intron |
| TAAAGACCTCCTTCAGATTT+GGG | 0.344785 | 4.2:-43102831 | None:intergenic |
| CATTAATGACCAACATTGAT+AGG | 0.346514 | 4.2:+43099998 | MS.gene004148:CDS |
| CTTGTTAACGACTATGGTAT+TGG | 0.346686 | 4.2:+43102781 | MS.gene004148:CDS |
| TGAACTTCTTGAAAGCATTT+CGG | 0.351113 | 4.2:+43095951 | MS.gene004148:CDS |
| CAATATACCTAGTATCATTC+GGG | 0.359556 | 4.2:-43110843 | None:intergenic |
| AAGAACGAAAGATTATAAAA+AGG | 0.361910 | 4.2:+43108300 | MS.gene004148:CDS |
| TGTAATAGTTGAAGATTTAG+AGG | 0.367142 | 4.2:+43095993 | MS.gene004148:CDS |
| GCTTGGTGAAGGGAGGGAAC+AGG | 0.377631 | 4.2:+43111278 | MS.gene004148:intron |
| TGGTCCAATTGGGGCCCATC+TGG | 0.379616 | 4.2:+43100541 | MS.gene004148:CDS |
| GCTTTCAAGCCTGAAATATA+TGG | 0.382189 | 4.2:+43092778 | MS.gene004148:CDS |
| TGTAATAGAGCTTGAGGATT+CGG | 0.389954 | 4.2:-43092830 | None:intergenic |
| ATTCATCCATTGCTCTAAAT+GGG | 0.390531 | 4.2:-43110518 | None:intergenic |
| CGGCTGAGTTTGAATGGAAA+AGG | 0.396255 | 4.2:+43099867 | MS.gene004148:CDS |
| CAAGAAGATGAATCCTATAA+AGG | 0.396458 | 4.2:+43104130 | MS.gene004148:CDS |
| CACCGTGCTTAATGTCTTAG+TGG | 0.401602 | 4.2:+43101557 | MS.gene004148:CDS |
| GATCATGAAAGTAAATATAA+TGG | 0.407899 | 4.2:+43100311 | MS.gene004148:CDS |
| CCAATATACCTAGTATCATT+CGG | 0.408883 | 4.2:-43110844 | None:intergenic |
| AAGTGGTTGCCTTTGAGAAC+AGG | 0.409368 | 4.2:+43102806 | MS.gene004148:CDS |
| TCATTGAGTTCTTTCTCTAT+AGG | 0.409841 | 4.2:-43096027 | None:intergenic |
| TTGTTAACGACTATGGTATT+GGG | 0.410665 | 4.2:+43102782 | MS.gene004148:CDS |
| TTTCAGCACTGATTTGCTCT+GGG | 0.418720 | 4.2:-43108057 | None:intergenic |
| AAAAGAAACTTGCATGGTCA+TGG | 0.425831 | 4.2:+43096115 | MS.gene004148:CDS |
| GCAAAGAGCATCTACTTTGA+AGG | 0.428223 | 4.2:+43092301 | MS.gene004148:CDS |
| GTTTAACAGAAGTTGCATAA+TGG | 0.430183 | 4.2:+43101191 | MS.gene004148:intron |
| GGCTTCCATAATTTGCTGTC+AGG | 0.431592 | 4.2:+43107997 | MS.gene004148:CDS |
| CACTTAGGCGTGAGAGCAAA+AGG | 0.434691 | 4.2:+43108098 | MS.gene004148:CDS |
| CCTTAGATCATCAATTGATT+CGG | 0.435592 | 4.2:-43108261 | None:intergenic |
| CAAGTGCTTGTTAACGACTA+TGG | 0.438425 | 4.2:+43102775 | MS.gene004148:CDS |
| TGTAAGATGGAAAGAATTGA+TGG | 0.438951 | 4.2:-43101522 | None:intergenic |
| TCAATCCTAGCTTGGCATAC+AGG | 0.440880 | 4.2:-43096204 | None:intergenic |
| ACTGCGTTGTGTGTTGCATT+TGG | 0.443216 | 4.2:+43092260 | MS.gene004148:CDS |
| TATACCAGATGGGCCCCAAT+TGG | 0.450039 | 4.2:-43100545 | None:intergenic |
| GCATTTGGTTGTCGAGCTAA+AGG | 0.450992 | 4.2:+43092275 | MS.gene004148:CDS |
| AGCTAGGATTGATAAACAAC+TGG | 0.458878 | 4.2:+43096215 | MS.gene004148:CDS |
| ATTGAGTTTCGTGATTTGAA+TGG | 0.458958 | 4.2:-43091137 | None:intergenic |
| GGATGCCAAAATTAAAATGA+TGG | 0.466285 | 4.2:+43096053 | MS.gene004148:CDS |
| CCAAGGAGGAATCAAGTATA+TGG | 0.470366 | 4.2:+43103981 | MS.gene004148:CDS |
| TACATTCAATTTCTGTCGAA+GGG | 0.470596 | 4.2:-43108339 | None:intergenic |
| GCTTCGCTAGGAGGTTGTGA+TGG | 0.471159 | 4.2:+43108028 | MS.gene004148:CDS |
| AATAAGCAGCATTGCTGCTA+AGG | 0.472056 | 4.2:+43100032 | MS.gene004148:CDS |
| GCTTAATGTCTTAGTGGATC+AGG | 0.472279 | 4.2:+43101563 | MS.gene004148:CDS |
| TTCTAAGAAGCTAAATTTGG+AGG | 0.473248 | 4.2:+43105279 | MS.gene004148:CDS |
| TGGGCCCCAATTGGACCAAT+GGG | 0.477585 | 4.2:-43100536 | None:intergenic |
| TGTGCAAAGGAAGCAGACTA+TGG | 0.478040 | 4.2:+43101308 | MS.gene004148:CDS |
| TGATCACCCCGAATGATACT+AGG | 0.480437 | 4.2:+43110836 | MS.gene004148:CDS |
| CTTCATGCCTCCTCTGCTCA+AGG | 0.480838 | 4.2:-43106143 | None:intergenic |
| TCAAATCACGAAACTCAATT+CGG | 0.483466 | 4.2:+43091141 | MS.gene004148:CDS |
| CGACTATGGTATTGGGAAAG+TGG | 0.483512 | 4.2:+43102789 | MS.gene004148:CDS |
| GGAGGCAGAGGAACACTATC+GGG | 0.483532 | 4.2:+43106531 | MS.gene004148:CDS |
| GTTGTTTATCAATCCTAGCT+TGG | 0.484038 | 4.2:-43096212 | None:intergenic |
| ATGATTCCTGCTTCAAGAGA+TGG | 0.484469 | 4.2:-43091084 | None:intergenic |
| CAAATTTACCTCAATCGATA+AGG | 0.486609 | 4.2:-43109636 | None:intergenic |
| TTGATGCGGCTGAGTTTGAA+TGG | 0.487145 | 4.2:+43099861 | MS.gene004148:CDS |
| GTATTAGGACGCATGCGCTC+TGG | 0.488270 | 4.2:-43101492 | None:intergenic |
| TAGAGATTGTGTTTACATGC+TGG | 0.490295 | 4.2:+43105244 | MS.gene004148:intron |
| ACTTATCAAAGTTGATTATG+AGG | 0.494408 | 4.2:+43109607 | MS.gene004148:CDS |
| AAAGCTTGAACTACAAATGC+AGG | 0.494805 | 4.2:+43098015 | MS.gene004148:CDS |
| GTTGCTGTTGAATATGCCAT+TGG | 0.501678 | 4.2:+43101227 | MS.gene004148:CDS |
| CCATATACTTGATTCCTCCT+TGG | 0.501679 | 4.2:-43103981 | None:intergenic |
| TATACTTGATTCCTCCTTGG+AGG | 0.502992 | 4.2:-43103978 | None:intergenic |
| TTTCAATGTAATAGAGCTTG+AGG | 0.504415 | 4.2:-43092836 | None:intergenic |
| GACCAACATTGATAGGCAAA+AGG | 0.508262 | 4.2:+43100005 | MS.gene004148:CDS |
| CCATGTTGAAATTCAAAATG+AGG | 0.509978 | 4.2:+43092747 | MS.gene004148:CDS |
| GCCTCCCATTGGTCCAATTG+GGG | 0.510794 | 4.2:+43100532 | MS.gene004148:CDS |
| AGAGAAAGAACTCAATGAGC+TGG | 0.512786 | 4.2:+43096032 | MS.gene004148:CDS |
| GAAGAAACTTGAGGATCAAA+GGG | 0.513256 | 4.2:+43096152 | MS.gene004148:CDS |
| TCGGGGTGATCAATATCCAC+TGG | 0.514310 | 4.2:-43110825 | None:intergenic |
| GATTGAAAAGCTGAAGAGTC+GGG | 0.514690 | 4.2:+43096179 | MS.gene004148:CDS |
| ATACGAGTCTAGTTCTTCTA+GGG | 0.516297 | 4.2:+43091056 | MS.gene004148:CDS |
| AGCTAGTAATGTGCAGAAGA+TGG | 0.517397 | 4.2:+43097979 | MS.gene004148:CDS |
| ATGGGCCCCAATTGGACCAA+TGG | 0.518253 | 4.2:-43100537 | None:intergenic |
| GTTCAGTCTCAGATTTCTCA+AGG | 0.519390 | 4.2:-43106345 | None:intergenic |
| ATACATTCAATTTCTGTCGA+AGG | 0.519826 | 4.2:-43108340 | None:intergenic |
| CAGGATGACCTTGCTTCGCT+AGG | 0.520004 | 4.2:+43108016 | MS.gene004148:CDS |
| AAAGAAACTTGCATGGTCAT+GGG | 0.520535 | 4.2:+43096116 | MS.gene004148:CDS |
| GTCATTCTCGCATTGTAAGA+TGG | 0.521018 | 4.2:-43101535 | None:intergenic |
| GTTTCGCCATCTCTTGAAGC+AGG | 0.522455 | 4.2:+43091078 | MS.gene004148:CDS |
| CTTCGCTAGGAGGTTGTGAT+GGG | 0.524927 | 4.2:+43108029 | MS.gene004148:CDS |
| ATCACAAGTTAAGCAAATGA+AGG | 0.529664 | 4.2:+43097751 | MS.gene004148:CDS |
| GAATGTGTGCAGCTTGGTGA+AGG | 0.530466 | 4.2:+43111267 | MS.gene004148:intron |
| TAGCTCGGCACCTTTGTCCT+CGG | 0.531347 | 4.2:+43105330 | MS.gene004148:CDS |
| AGAAGAAACTTGAGGATCAA+AGG | 0.531514 | 4.2:+43096151 | MS.gene004148:CDS |
| TTTAAGCCACTCTTTGTCAT+CGG | 0.538730 | 4.2:+43097778 | MS.gene004148:CDS |
| AATCACAATTGGTCAAGCAC+GGG | 0.546782 | 4.2:-43111326 | None:intergenic |
| TGTTGAACGAATTGCTGTAC+AGG | 0.549951 | 4.2:+43096080 | MS.gene004148:CDS |
| TGAAATTCAAAATGAGGGAG+AGG | 0.550279 | 4.2:+43092753 | MS.gene004148:CDS |
| TTCAGCACTGATTTGCTCTG+GGG | 0.551309 | 4.2:-43108056 | None:intergenic |
| GGGTTCCTGTATGCCAAGCT+AGG | 0.551572 | 4.2:+43096199 | MS.gene004148:CDS |
| ATAATGCTTTAGAGTTTCGA+AGG | 0.554123 | 4.2:+43109404 | MS.gene004148:CDS |
| CTATAAAAGTGATAAAAGAA+AGG | 0.554200 | 4.2:+43104082 | MS.gene004148:CDS |
| TTGCACATTGTTTCAGAAGA+CGG | 0.559966 | 4.2:-43101292 | None:intergenic |
| AACTTGAGGATCAAAGGGTA+AGG | 0.562768 | 4.2:+43096157 | MS.gene004148:CDS |
| TTGCTGTTGAATATGCCATT+GGG | 0.563173 | 4.2:+43101228 | MS.gene004148:CDS |
| AGTTGCATAATGGTAATAAG+TGG | 0.563930 | 4.2:+43101201 | MS.gene004148:CDS |
| CTGCCTCCTTAATATCATGC+AGG | 0.564666 | 4.2:-43106516 | None:intergenic |
| AGGAGGCAGAGGAACACTAT+CGG | 0.566175 | 4.2:+43106530 | MS.gene004148:CDS |
| CATGTTGAAATTCAAAATGA+GGG | 0.566745 | 4.2:+43092748 | MS.gene004148:CDS |
| CTTGGTGAAGGGAGGGAACA+GGG | 0.567012 | 4.2:+43111279 | MS.gene004148:CDS |
| AGCAACGTTAATCTCATCAC+TGG | 0.568244 | 4.2:+43091165 | MS.gene004148:CDS |
| TGAAAATTTCATGAAAACAA+AGG | 0.569118 | 4.2:+43106492 | MS.gene004148:CDS |
| AATTAAGCGAAAGCAACTCT+AGG | 0.569276 | 4.2:+43097699 | MS.gene004148:CDS |
| AAGGAGGTCTTTACTGTGGA+GGG | 0.569419 | 4.2:+43102841 | MS.gene004148:CDS |
| GGAGGCCCCATTTAGAGCAA+TGG | 0.569434 | 4.2:+43110512 | MS.gene004148:CDS |
| GCATGATATTAAGGAGGCAG+AGG | 0.571752 | 4.2:+43106519 | MS.gene004148:CDS |
| AAAGTCTAAATCATACACTT+AGG | 0.572201 | 4.2:+43108083 | MS.gene004148:CDS |
| AAATCACAATTGGTCAAGCA+CGG | 0.573228 | 4.2:-43111327 | None:intergenic |
| CAGGGTTAAGAAGATGCAAA+TGG | 0.576301 | 4.2:+43111297 | MS.gene004148:CDS |
| GGGCCTCCGTCATTTCATGA+AGG | 0.578750 | 4.2:-43110497 | None:intergenic |
| AAGTGATAAAAGAAAGGCAG+AGG | 0.580802 | 4.2:+43104088 | MS.gene004148:CDS |
| CAGAGGAGGCATGAAGCAGA+GGG | 0.582349 | 4.2:+43106150 | MS.gene004148:CDS |
| ACTGAAGGGGCTTCGAGAGG+AGG | 0.585025 | 4.2:+43099838 | MS.gene004148:CDS |
| GGATTGAAAAGCTGAAGAGT+CGG | 0.585532 | 4.2:+43096178 | MS.gene004148:CDS |
| GATGACCTTGCTTCGCTAGG+AGG | 0.590407 | 4.2:+43108019 | MS.gene004148:CDS |
| ATTTGGGATCCTGTTCTCAA+AGG | 0.590460 | 4.2:-43102815 | None:intergenic |
| CGGGGTGATCAATATCCACT+GGG | 0.591640 | 4.2:-43110824 | None:intergenic |
| ACAGAGCTGTTCGAGACACA+AGG | 0.591749 | 4.2:+43109839 | MS.gene004148:CDS |
| GCAGAGGAGGCATGAAGCAG+AGG | 0.592152 | 4.2:+43106149 | MS.gene004148:CDS |
| TAGAGACAATTCTTCCTCCA+AGG | 0.595758 | 4.2:+43103964 | MS.gene004148:CDS |
| GGAAACGACCTTATCGATTG+AGG | 0.596487 | 4.2:+43109628 | MS.gene004148:CDS |
| TAATTGAGAGATGTCATCAA+AGG | 0.596749 | 4.2:+43100501 | MS.gene004148:CDS |
| ATTGACTTGCTGAAGAAGTG+TGG | 0.597751 | 4.2:-43095929 | None:intergenic |
| GTTGCATAATGGTAATAAGT+GGG | 0.604938 | 4.2:+43101202 | MS.gene004148:CDS |
| AAAGGCAGAGGTCAAACTTG+AGG | 0.606440 | 4.2:+43104100 | MS.gene004148:CDS |
| CACAACCTCCTAGCGAAGCA+AGG | 0.608263 | 4.2:-43108024 | None:intergenic |
| GGCCTCCGTCATTTCATGAA+GGG | 0.610350 | 4.2:-43110496 | None:intergenic |
| ATTAGCCCTTCATGAAATGA+CGG | 0.611197 | 4.2:+43110491 | MS.gene004148:CDS |
| TGATGTGGAGAAGAAACTTG+AGG | 0.612008 | 4.2:+43096143 | MS.gene004148:CDS |
| TTCAGTCTCAGATTTCTCAA+GGG | 0.612220 | 4.2:-43106344 | None:intergenic |
| AGGTTTAGGATGCCTCCCAT+TGG | 0.614688 | 4.2:+43100521 | MS.gene004148:CDS |
| GCTTCGAGAGGAGGTTGATG+CGG | 0.616385 | 4.2:+43099847 | MS.gene004148:CDS |
| TCTTGACTCATAATCACACA+CGG | 0.617166 | 4.2:-43095265 | None:intergenic |
| GAAGGAGGTCTTTACTGTGG+AGG | 0.619267 | 4.2:+43102840 | MS.gene004148:CDS |
| GCTCTGTTTGATGTATCTTG+GGG | 0.619473 | 4.2:-43109823 | None:intergenic |
| TGTTAGAACGCCTTGAGCAG+AGG | 0.622007 | 4.2:+43106133 | MS.gene004148:CDS |
| TAGAACGCCTTGAGCAGAGG+AGG | 0.631658 | 4.2:+43106136 | MS.gene004148:CDS |
| AAGCTTGAACTACAAATGCA+GGG | 0.633856 | 4.2:+43098016 | MS.gene004148:CDS |
| TCTTCTGAAACAATGTGCAA+AGG | 0.634559 | 4.2:+43101295 | MS.gene004148:CDS |
| TTCATCCATTGCTCTAAATG+GGG | 0.635651 | 4.2:-43110517 | None:intergenic |
| CATCAAAGACTATACCAGAT+GGG | 0.636949 | 4.2:-43100555 | None:intergenic |
| AATGTGTGCAGCTTGGTGAA+GGG | 0.638597 | 4.2:+43111268 | MS.gene004148:intron |
| GCCCCAATTGGACCAATGGG+AGG | 0.639867 | 4.2:-43100533 | None:intergenic |
| AGAATTGAACAATCTCCCAA+TGG | 0.643670 | 4.2:-43101243 | None:intergenic |
| AGATGGAAAGAATTGATGGA+TGG | 0.643792 | 4.2:-43101518 | None:intergenic |
| ATCACAATTGGTCAAGCACG+GGG | 0.646023 | 4.2:-43111325 | None:intergenic |
| AACATACCGATGACAAAGAG+TGG | 0.646147 | 4.2:-43097784 | None:intergenic |
| GTGTGCAGCTTGGTGAAGGG+AGG | 0.647999 | 4.2:+43111271 | MS.gene004148:intron |
| AAGACAAATAGATGCAGTGA+CGG | 0.648122 | 4.2:+43106381 | MS.gene004148:CDS |
| GAACAGGATCCCAAATCTGA+AGG | 0.651910 | 4.2:+43102822 | MS.gene004148:CDS |
| ATCTCATCAACCGAGGACAA+AGG | 0.656840 | 4.2:-43105340 | None:intergenic |
| TTCAACAATCTCATCAACCG+AGG | 0.657847 | 4.2:-43105347 | None:intergenic |
| ATCCACTAAGACATTAAGCA+CGG | 0.662373 | 4.2:-43101559 | None:intergenic |
| ACAAGCGACTGAAAGTAGCT+CGG | 0.665798 | 4.2:+43105315 | MS.gene004148:CDS |
| ACAAATAGATGCAGTGACGG+AGG | 0.666229 | 4.2:+43106384 | MS.gene004148:CDS |
| AAAACTGAAGGGGCTTCGAG+AGG | 0.666772 | 4.2:+43099835 | MS.gene004148:CDS |
| ATGTTATCATTGTAGAACGT+AGG | 0.666781 | 4.2:+43092803 | MS.gene004148:CDS |
| GTAAAATTTGACAAACTGTG+TGG | 0.668627 | 4.2:+43106192 | MS.gene004148:CDS |
| CAGAGCTGTTCGAGACACAA+GGG | 0.669316 | 4.2:+43109840 | MS.gene004148:CDS |
| CAGGATCCCAAATCTGAAGG+AGG | 0.669794 | 4.2:+43102825 | MS.gene004148:CDS |
| TGTGCAGCTTGGTGAAGGGA+GGG | 0.670551 | 4.2:+43111272 | MS.gene004148:intron |
| GCAGGCCGAAGAATCTGACA+TGG | 0.672118 | 4.2:+43099808 | MS.gene004148:intron |
| ATGGTCATGGGTTTATGATG+TGG | 0.673471 | 4.2:+43096128 | MS.gene004148:CDS |
| TCTGAAGGAGGTCTTTACTG+TGG | 0.676412 | 4.2:+43102837 | MS.gene004148:CDS |
| CTTGACTCATAATCACACAC+GGG | 0.680254 | 4.2:-43095264 | None:intergenic |
| TCAACGACAACAAAGCAACA+AGG | 0.680584 | 4.2:+43100358 | MS.gene004148:CDS |
| AGAGCTGTTCGAGACACAAG+GGG | 0.683582 | 4.2:+43109841 | MS.gene004148:CDS |
| GGTCCTGCATGATATTAAGG+AGG | 0.685132 | 4.2:+43106513 | MS.gene004148:CDS |
| AGACAATTCTTCCTCCAAGG+AGG | 0.692790 | 4.2:+43103967 | MS.gene004148:CDS |
| GGCCGAAGAATCTGACATGG+AGG | 0.698329 | 4.2:+43099811 | MS.gene004148:intron |
| GCATAATGGTAATAAGTGGG+CGG | 0.698969 | 4.2:+43101205 | MS.gene004148:CDS |
| CTGAGGCACAAGGATCCCAG+TGG | 0.705015 | 4.2:+43110809 | MS.gene004148:CDS |
| AGCCCTTCATGAAATGACGG+AGG | 0.719050 | 4.2:+43110494 | MS.gene004148:CDS |
| AATATACCTAGTATCATTCG+GGG | 0.733090 | 4.2:-43110842 | None:intergenic |
| ATTACATTGAAAGATCAACA+AGG | 0.744632 | 4.2:+43092847 | MS.gene004148:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 43091036 | 43111336 | 43091036 | ID=MS.gene004148 |
| chr4.2 | mRNA | 43091036 | 43111336 | 43091036 | ID=MS.gene004148.t1;Parent=MS.gene004148 |
| chr4.2 | exon | 43091036 | 43091198 | 43091036 | ID=MS.gene004148.t1.exon1;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43091036 | 43091198 | 43091036 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43092240 | 43092345 | 43092240 | ID=MS.gene004148.t1.exon2;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43092240 | 43092345 | 43092240 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43092735 | 43092868 | 43092735 | ID=MS.gene004148.t1.exon3;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43092735 | 43092868 | 43092735 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43094852 | 43094907 | 43094852 | ID=MS.gene004148.t1.exon4;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43094852 | 43094907 | 43094852 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43095250 | 43095336 | 43095250 | ID=MS.gene004148.t1.exon5;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43095250 | 43095336 | 43095250 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43095916 | 43096236 | 43095916 | ID=MS.gene004148.t1.exon6;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43095916 | 43096236 | 43095916 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43097686 | 43097799 | 43097686 | ID=MS.gene004148.t1.exon7;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43097686 | 43097799 | 43097686 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43097935 | 43098069 | 43097935 | ID=MS.gene004148.t1.exon8;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43097935 | 43098069 | 43097935 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43099812 | 43099888 | 43099812 | ID=MS.gene004148.t1.exon9;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43099812 | 43099888 | 43099812 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43099978 | 43100053 | 43099978 | ID=MS.gene004148.t1.exon10;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43099978 | 43100053 | 43099978 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43100305 | 43100379 | 43100305 | ID=MS.gene004148.t1.exon11;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43100305 | 43100379 | 43100305 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43100458 | 43100562 | 43100458 | ID=MS.gene004148.t1.exon12;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43100458 | 43100562 | 43100458 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43101200 | 43101369 | 43101200 | ID=MS.gene004148.t1.exon13;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43101200 | 43101369 | 43101200 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43101482 | 43101584 | 43101482 | ID=MS.gene004148.t1.exon14;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43101482 | 43101584 | 43101482 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43102760 | 43102872 | 43102760 | ID=MS.gene004148.t1.exon15;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43102760 | 43102872 | 43102760 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43103947 | 43104151 | 43103947 | ID=MS.gene004148.t1.exon16;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43103947 | 43104151 | 43103947 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43105247 | 43105378 | 43105247 | ID=MS.gene004148.t1.exon17;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43105247 | 43105378 | 43105247 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43106099 | 43106213 | 43106099 | ID=MS.gene004148.t1.exon18;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43106099 | 43106213 | 43106099 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43106320 | 43106405 | 43106320 | ID=MS.gene004148.t1.exon19;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43106320 | 43106405 | 43106320 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43106478 | 43106573 | 43106478 | ID=MS.gene004148.t1.exon20;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43106478 | 43106573 | 43106478 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43107983 | 43108119 | 43107983 | ID=MS.gene004148.t1.exon21;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43107983 | 43108119 | 43107983 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43108256 | 43108358 | 43108256 | ID=MS.gene004148.t1.exon22;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43108256 | 43108358 | 43108256 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43109397 | 43109476 | 43109397 | ID=MS.gene004148.t1.exon23;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43109397 | 43109476 | 43109397 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43109571 | 43109649 | 43109571 | ID=MS.gene004148.t1.exon24;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43109571 | 43109649 | 43109571 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43109814 | 43109871 | 43109814 | ID=MS.gene004148.t1.exon25;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43109814 | 43109871 | 43109814 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43110457 | 43110554 | 43110457 | ID=MS.gene004148.t1.exon26;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43110457 | 43110554 | 43110457 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43110763 | 43110857 | 43110763 | ID=MS.gene004148.t1.exon27;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43110763 | 43110857 | 43110763 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| chr4.2 | exon | 43111279 | 43111336 | 43111279 | ID=MS.gene004148.t1.exon28;Parent=MS.gene004148.t1 |
| chr4.2 | CDS | 43111279 | 43111336 | 43111279 | ID=cds.MS.gene004148.t1;Parent=MS.gene004148.t1 |
| Gene Sequence |
| Protein sequence |
