Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005004.t1 | XP_013468922.1 | 98.7 | 379 | 3 | 1 | 1 | 377 | 1 | 379 | 3.10E-208 | 734.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005004.t1 | Q9ZT87 | 78.4 | 379 | 79 | 2 | 1 | 377 | 1 | 378 | 7.5e-171 | 601.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005004.t1 | A0A072VLU0 | 98.7 | 379 | 3 | 1 | 1 | 377 | 1 | 379 | 2.2e-208 | 734.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74850 | MS.gene005004 | PPI |
| MS.gene07548 | MS.gene005004 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005004.t1 | MTR_1g078400 | 98.681 | 379 | 3 | 1 | 1 | 377 | 1 | 379 | 0.0 | 768 |
| MS.gene005004.t1 | MTR_1g078400 | 98.438 | 320 | 3 | 1 | 1 | 318 | 1 | 320 | 0.0 | 648 |
| MS.gene005004.t1 | MTR_7g102760 | 43.367 | 392 | 203 | 6 | 1 | 376 | 1 | 389 | 1.34e-98 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005004.t1 | AT4G27650 | 78.364 | 379 | 79 | 2 | 1 | 377 | 1 | 378 | 0.0 | 625 |
| MS.gene005004.t1 | AT4G27650 | 78.364 | 379 | 79 | 2 | 1 | 377 | 1 | 378 | 0.0 | 625 |
| MS.gene005004.t1 | AT4G27650 | 78.364 | 379 | 79 | 2 | 1 | 377 | 1 | 378 | 0.0 | 625 |
| MS.gene005004.t1 | AT3G58390 | 70.000 | 400 | 92 | 4 | 1 | 377 | 1 | 395 | 0.0 | 570 |
Find 67 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAATTCAGTTAAGGATTC+TGG | 0.172762 | 1.3:-56161728 | MS.gene005004:CDS |
| TTAGCCCATATCCTCCTTAT+TGG | 0.278692 | 1.3:-56166102 | MS.gene005004:CDS |
| ATATCCTCCTTATTGGTAAA+AGG | 0.288893 | 1.3:-56166095 | MS.gene005004:intron |
| TTTATCATGTTCATGACATT+TGG | 0.301926 | 1.3:+56163897 | None:intergenic |
| GTAACTCAAGTTCTAAAGTA+TGG | 0.306803 | 1.3:+56166732 | None:intergenic |
| TTTGCCTTTCGTAGGATGTC+TGG | 0.312960 | 1.3:-56166499 | MS.gene005004:intron |
| AATTGAACCTTAACGCTTCC+AGG | 0.331018 | 1.3:+56167809 | None:intergenic |
| GCATAGTTTAAAAGAGGTTC+TGG | 0.333349 | 1.3:-56163925 | MS.gene005004:CDS |
| TGAACGTGTTAAACTCAAAT+TGG | 0.335052 | 1.3:-56167593 | MS.gene005004:CDS |
| TGTCTGGGATTCTTATGCTT+TGG | 0.353497 | 1.3:-56166483 | MS.gene005004:CDS |
| GATTCATCACGTGCTTGTTA+TGG | 0.355531 | 1.3:-56162427 | MS.gene005004:CDS |
| TTTGCACAGCTAGGCGTTCA+TGG | 0.362499 | 1.3:+56162383 | None:intergenic |
| CAATCATGGCCGTTACTATC+AGG | 0.364180 | 1.3:-56167654 | MS.gene005004:CDS |
| ATCTCCATGTCTTCGAGATC+AGG | 0.375283 | 1.3:+56161360 | None:intergenic |
| CTGGGATTCTTATGCTTTGG+AGG | 0.376577 | 1.3:-56166480 | MS.gene005004:CDS |
| TAACTTGGTCAATTCAGTTA+AGG | 0.403397 | 1.3:-56161735 | MS.gene005004:CDS |
| AAGCATGGGCCTGCTATTGC+TGG | 0.435283 | 1.3:-56165793 | MS.gene005004:CDS |
| GACTTTGTGCGCAATGGACC+TGG | 0.437274 | 1.3:-56167827 | MS.gene005004:CDS |
| GAGGTACTCCAGCAGGCCTC+TGG | 0.441982 | 1.3:-56166461 | MS.gene005004:intron |
| TGCTTTGGAGGTACTCCAGC+AGG | 0.452022 | 1.3:-56166468 | MS.gene005004:CDS |
| CAGTGGATTCAGATGATCTA+TGG | 0.452319 | 1.3:-56167708 | MS.gene005004:CDS |
| TTGCCTTTCGTAGGATGTCT+GGG | 0.452424 | 1.3:-56166498 | MS.gene005004:intron |
| GTGGTATTGCTGCAATTCTT+CGG | 0.459436 | 1.3:-56161392 | MS.gene005004:CDS |
| CGAAAAGACTTTGTGCGCAA+TGG | 0.462477 | 1.3:-56167833 | MS.gene005004:CDS |
| TTTACCAATAAGGAGGATAT+GGG | 0.463278 | 1.3:+56166098 | None:intergenic |
| GAACATGATAAAAGATACTA+AGG | 0.469528 | 1.3:-56163886 | MS.gene005004:CDS |
| ATAACATACCAGAGGCCTGC+TGG | 0.479042 | 1.3:+56166453 | None:intergenic |
| CTGTAGGCATAGTTTAAAAG+AGG | 0.487997 | 1.3:-56163931 | MS.gene005004:intron |
| ATTACCTTCCTGAGCACAAA+AGG | 0.492792 | 1.3:+56166704 | None:intergenic |
| CTTCCCGCGAACACGCAAAA+CGG | 0.498620 | 1.3:+56166870 | None:intergenic |
| TTGCACAGCTAGGCGTTCAT+GGG | 0.499013 | 1.3:+56162384 | None:intergenic |
| TCGAAGACATGGAGATGTAA+TGG | 0.501027 | 1.3:-56161353 | None:intergenic |
| GCTAGATCAGCACTTGCAGC+AGG | 0.502678 | 1.3:+56166147 | None:intergenic |
| GCTTCAATTCCTCGTAAGCA+TGG | 0.505004 | 1.3:-56165808 | MS.gene005004:CDS |
| GTATATAATTTGATAGCTCC+TGG | 0.505012 | 1.3:-56167682 | MS.gene005004:CDS |
| GTTCTTAGAGAAGCAGCTAA+TGG | 0.507930 | 1.3:-56167628 | MS.gene005004:CDS |
| ATTCTCACTCACACGACCTC+AGG | 0.527617 | 1.3:-56164424 | MS.gene005004:CDS |
| TCTTCAGGTTCGAATTCTGA+AGG | 0.535228 | 1.3:-56163760 | MS.gene005004:intron |
| TCTCCATGTCTTCGAGATCA+GGG | 0.535323 | 1.3:+56161361 | None:intergenic |
| TGTGCTGTAATTGCAAGTCC+TGG | 0.539910 | 1.3:-56164720 | MS.gene005004:CDS |
| CTTTCGTAACCAGCAATAGC+AGG | 0.539938 | 1.3:+56165784 | None:intergenic |
| AGCTCCTGGTGATTCAATCA+TGG | 0.552812 | 1.3:-56167668 | MS.gene005004:CDS |
| GTATGACTGTTACTCGTTCG+CGG | 0.553104 | 1.3:-56165837 | MS.gene005004:CDS |
| AGATACTAAGGCAGCACAAG+AGG | 0.557963 | 1.3:-56163874 | MS.gene005004:intron |
| CATGCATGGATGAAAATACA+TGG | 0.575010 | 1.3:+56161696 | None:intergenic |
| CTTCAATTCCTCGTAAGCAT+GGG | 0.583987 | 1.3:-56165807 | MS.gene005004:CDS |
| TCTCCCTGATCTCGAAGACA+TGG | 0.585381 | 1.3:-56161364 | MS.gene005004:CDS |
| CATAGATCATCTGAATCCAC+TGG | 0.593444 | 1.3:+56167709 | None:intergenic |
| TTATGGAACAAAACATGTTG+AGG | 0.595098 | 1.3:-56162410 | MS.gene005004:CDS |
| TGAGAAGCGTTTGCACAGCT+AGG | 0.600897 | 1.3:+56162374 | None:intergenic |
| AAGAACTTTCCTGATAGTAA+CGG | 0.602859 | 1.3:+56167645 | None:intergenic |
| CTTAGAGAAGCAGCTAATGG+TGG | 0.604388 | 1.3:-56167625 | MS.gene005004:CDS |
| TGATACACAGATGGTGCCAG+TGG | 0.604532 | 1.3:-56167725 | MS.gene005004:intron |
| ACAGAACTAGAGCAGATAAG+TGG | 0.610661 | 1.3:-56161411 | MS.gene005004:intron |
| TCTAGAGAATGAACATGTCA+AGG | 0.615714 | 1.3:-56166842 | MS.gene005004:intron |
| AATTCAGTTAAGGATTCTGG+AGG | 0.623215 | 1.3:-56161725 | MS.gene005004:CDS |
| TGCAAGTGCTGATCTAGCTG+TGG | 0.630199 | 1.3:-56166142 | MS.gene005004:CDS |
| CTTTAGAACTTGAGTTACAG+CGG | 0.635772 | 1.3:-56166727 | MS.gene005004:CDS |
| ATGTCTTCGAGATCAGGGAG+AGG | 0.648204 | 1.3:+56161366 | None:intergenic |
| GCTGTGGTGTTGATGCAAGA+AGG | 0.651031 | 1.3:-56166126 | MS.gene005004:CDS |
| ACGGCCATGATTGAATCACC+AGG | 0.658374 | 1.3:+56167664 | None:intergenic |
| ATAGCAGGCCCATGCTTACG+AGG | 0.660640 | 1.3:+56165799 | None:intergenic |
| GGTGTGGATTATGACAAAGA+AGG | 0.663103 | 1.3:-56166895 | MS.gene005004:CDS |
| GGAATGCAGATATACCTACC+AGG | 0.665150 | 1.3:-56161769 | MS.gene005004:CDS |
| ACGTTCTCCAGAGACATGCA+TGG | 0.686516 | 1.3:+56161682 | None:intergenic |
| GCAACCGTACTTGTATCCTG+AGG | 0.720068 | 1.3:+56164408 | None:intergenic |
| GAGACATATAGATTTCAACG+TGG | 0.809146 | 1.3:-56164748 | MS.gene005004:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATTATGTAATAATAAT+AGG | - | chr1.3:56162234-56162253 | MS.gene005004:intron | 10.0% |
| !!! | TAGAAATTTTGTTTAAAAAT+TGG | - | chr1.3:56166037-56166056 | MS.gene005004:intron | 10.0% |
| !!! | TTTATTTTTTATTTTTCTTC+AGG | - | chr1.3:56165426-56165445 | MS.gene005004:intron | 10.0% |
| !!! | TTTTTATTTTTTAAAAAGCA+GGG | + | chr1.3:56167137-56167156 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTTTAAAAAGC+AGG | + | chr1.3:56167138-56167157 | None:intergenic | 10.0% |
| !! | AACAACAAAACATAATTTAA+TGG | + | chr1.3:56165091-56165110 | None:intergenic | 15.0% |
| !! | AATATGAAAATGAAATATCA+TGG | + | chr1.3:56165783-56165802 | None:intergenic | 15.0% |
| !! | ATAAATAATTAAGAGTTGAA+TGG | + | chr1.3:56162173-56162192 | None:intergenic | 15.0% |
| !! | ATATATTCCATATAGAAAAT+GGG | - | chr1.3:56163635-56163654 | MS.gene005004:intron | 15.0% |
| !! | TATATATTCCATATAGAAAA+TGG | - | chr1.3:56163634-56163653 | MS.gene005004:intron | 15.0% |
| !! | TTAAAATACTGGAAAATTAT+GGG | + | chr1.3:56165028-56165047 | None:intergenic | 15.0% |
| !! | TTATAAAATTGACAGTTTAT+CGG | + | chr1.3:56162781-56162800 | None:intergenic | 15.0% |
| !! | TTCACTTAAAATCTTATATA+TGG | + | chr1.3:56165123-56165142 | None:intergenic | 15.0% |
| !! | TTCATTTAGATATATCATTT+AGG | - | chr1.3:56162603-56162622 | MS.gene005004:intron | 15.0% |
| !!! | AATTTCTTTTTCAATATGAA+GGG | - | chr1.3:56163675-56163694 | MS.gene005004:intron | 15.0% |
| !!! | ACAAATTTTGAAGTTAATAT+TGG | + | chr1.3:56167230-56167249 | None:intergenic | 15.0% |
| !!! | ATTGTGTGTTTTTTTTTATT+AGG | - | chr1.3:56161663-56161682 | MS.gene005004:intron | 15.0% |
| !!! | TAAACTGTCAATTTTATAAT+AGG | - | chr1.3:56162782-56162801 | MS.gene005004:intron | 15.0% |
| !!! | TAGAACTATATCAAAATTTT+GGG | - | chr1.3:56162627-56162646 | MS.gene005004:intron | 15.0% |
| !!! | TTAGAACTATATCAAAATTT+TGG | - | chr1.3:56162626-56162645 | MS.gene005004:intron | 15.0% |
| !!! | TTATTATATTGATGACTTTT+AGG | - | chr1.3:56164070-56164089 | MS.gene005004:intron | 15.0% |
| !! | AATAATGGTAAACAAGTATT+AGG | - | chr1.3:56167615-56167634 | MS.gene005004:CDS | 20.0% |
| !! | AGAACAAGTAATTAATATCA+CGG | + | chr1.3:56163261-56163280 | None:intergenic | 20.0% |
| !! | ATCCATTTAAGTAAGAAAAA+TGG | - | chr1.3:56162883-56162902 | MS.gene005004:intron | 20.0% |
| !! | ATGAATACAGATATAAGTAT+GGG | - | chr1.3:56165976-56165995 | MS.gene005004:intron | 20.0% |
| !! | ATTAGTAGCTTTCATTAAAT+AGG | - | chr1.3:56163130-56163149 | MS.gene005004:intron | 20.0% |
| !! | CATGAAAATTATAGTCAATT+AGG | - | chr1.3:56164901-56164920 | MS.gene005004:intron | 20.0% |
| !! | CTAACATATATCAAGTATTT+GGG | - | chr1.3:56166528-56166547 | MS.gene005004:intron | 20.0% |
| !! | GTTAAAATACTGGAAAATTA+TGG | + | chr1.3:56165029-56165048 | None:intergenic | 20.0% |
| !! | TCTTTAAGTATAGAGAATAT+AGG | - | chr1.3:56162000-56162019 | MS.gene005004:intron | 20.0% |
| !! | TGGTGTAAATAATGTTAATA+TGG | - | chr1.3:56163001-56163020 | MS.gene005004:intron | 20.0% |
| !! | TTCATATTCATTAATTGATG+TGG | - | chr1.3:56161917-56161936 | MS.gene005004:intron | 20.0% |
| !!! | AAGATTTTTATTTTCAGCTT+AGG | - | chr1.3:56166485-56166504 | MS.gene005004:CDS | 20.0% |
| !!! | AATCCTGATTGAATATTTTT+CGG | - | chr1.3:56166742-56166761 | MS.gene005004:CDS | 20.0% |
| !!! | GAATTTCTTTTTCAATATGA+AGG | - | chr1.3:56163674-56163693 | MS.gene005004:intron | 20.0% |
| !!! | GTAAAACTATTTTACACTAA+CGG | + | chr1.3:56162033-56162052 | None:intergenic | 20.0% |
| !!! | TTTTAAACTCATAGAAAAGT+AGG | + | chr1.3:56164850-56164869 | None:intergenic | 20.0% |
| !!! | TTTTGTCTTGTATCTTTTTT+TGG | - | chr1.3:56162277-56162296 | MS.gene005004:intron | 20.0% |
| ! | AAAGATCAATACTCTTCTTT+CGG | + | chr1.3:56165682-56165701 | None:intergenic | 25.0% |
| ! | AAGAAATTCTAATGTGAATG+AGG | + | chr1.3:56165248-56165267 | None:intergenic | 25.0% |
| ! | AATTATAGTCAATTAGGTGT+AGG | - | chr1.3:56164907-56164926 | MS.gene005004:intron | 25.0% |
| ! | AGAATCAAGTGTTAAAATAC+TGG | + | chr1.3:56165039-56165058 | None:intergenic | 25.0% |
| ! | AGAGTATGTTGAAAATGAAA+AGG | - | chr1.3:56167050-56167069 | MS.gene005004:intron | 25.0% |
| ! | AGTTAGTTACAAAATCTTAG+AGG | + | chr1.3:56166309-56166328 | None:intergenic | 25.0% |
| ! | ATCTAGTTATCATGCTATAA+TGG | + | chr1.3:56167280-56167299 | None:intergenic | 25.0% |
| ! | CATGAATACAGATATAAGTA+TGG | - | chr1.3:56165975-56165994 | MS.gene005004:intron | 25.0% |
| ! | CATTAGAATTTCTTATCTGT+AGG | - | chr1.3:56165254-56165273 | MS.gene005004:intron | 25.0% |
| ! | CATTTAAGTAAGAAAAATGG+TGG | - | chr1.3:56162886-56162905 | MS.gene005004:intron | 25.0% |
| ! | CTAAGTTTAACTGAATCAAT+AGG | - | chr1.3:56165617-56165636 | MS.gene005004:intron | 25.0% |
| ! | GAACAAGTAATTAATATCAC+GGG | + | chr1.3:56163260-56163279 | None:intergenic | 25.0% |
| ! | GAACATGATAAAAGATACTA+AGG | - | chr1.3:56165315-56165334 | MS.gene005004:intron | 25.0% |
| ! | GAGTATGTTGAAAATGAAAA+GGG | - | chr1.3:56167051-56167070 | MS.gene005004:intron | 25.0% |
| ! | GATGAATAAAGTCATTGAAA+TGG | + | chr1.3:56163324-56163343 | None:intergenic | 25.0% |
| ! | GCTAACATATATCAAGTATT+TGG | - | chr1.3:56166527-56166546 | MS.gene005004:intron | 25.0% |
| ! | TACAATACACCAAAAATGAT+AGG | - | chr1.3:56164202-56164221 | MS.gene005004:intron | 25.0% |
| ! | TACTTGTTTACCATTATTTG+CGG | + | chr1.3:56167613-56167632 | None:intergenic | 25.0% |
| ! | TATAAGAAAAACGCTATAGA+TGG | - | chr1.3:56166428-56166447 | MS.gene005004:intron | 25.0% |
| ! | TATATACCATTGTAAAAGAG+AGG | + | chr1.3:56163460-56163479 | None:intergenic | 25.0% |
| ! | TGTCCAACAAAATTAAGAAA+GGG | - | chr1.3:56164383-56164402 | MS.gene005004:intron | 25.0% |
| ! | TTATCAATCACAACATCAAA+AGG | + | chr1.3:56167376-56167395 | None:intergenic | 25.0% |
| ! | TTGTCCAACAAAATTAAGAA+AGG | - | chr1.3:56164382-56164401 | MS.gene005004:intron | 25.0% |
| ! | TTTAGATGCTTGTATTATTG+AGG | - | chr1.3:56165735-56165754 | MS.gene005004:intron | 25.0% |
| ! | TTTATCATGTTCATGACATT+TGG | + | chr1.3:56165307-56165326 | None:intergenic | 25.0% |
| ! | TTTCTATTGCTGTATAACAA+TGG | + | chr1.3:56166023-56166042 | None:intergenic | 25.0% |
| !! | AACTGAATTCATAACAGTTT+TGG | - | chr1.3:56166234-56166253 | MS.gene005004:intron | 25.0% |
| !! | ACTAATACCTTTTACCAATA+AGG | + | chr1.3:56163116-56163135 | None:intergenic | 25.0% |
| !! | AGATATAAGTATGGGTTAAA+GGG | - | chr1.3:56165984-56166003 | MS.gene005004:intron | 25.0% |
| !! | ATCCTGATTGAATATTTTTC+GGG | - | chr1.3:56166743-56166762 | MS.gene005004:CDS | 25.0% |
| !! | TAAATATATCTGCATGCTTT+TGG | - | chr1.3:56167404-56167423 | MS.gene005004:intron | 25.0% |
| !! | TATTTTCATGCATACACTAA+AGG | + | chr1.3:56166604-56166623 | None:intergenic | 25.0% |
| !! | TTACATACTTTTGTAAATCC+AGG | + | chr1.3:56164502-56164521 | None:intergenic | 25.0% |
| !! | TTTTATCTAAACCATTTCCA+AGG | + | chr1.3:56167187-56167206 | None:intergenic | 25.0% |
| !!! | CACCATTTTTCTTACTTAAA+TGG | + | chr1.3:56162888-56162907 | None:intergenic | 25.0% |
| !!! | GACATTTTTTCTGCATTTTA+AGG | + | chr1.3:56165164-56165183 | None:intergenic | 25.0% |
| !!! | GCAAAATTTGTTGTTAATGT+TGG | - | chr1.3:56161448-56161467 | MS.gene005004:intron | 25.0% |
| !!! | GGCAACAGAAATTTTAAAAA+GGG | + | chr1.3:56165554-56165573 | None:intergenic | 25.0% |
| !!! | TAAGAAGATTTTTGACTCTT+GGG | - | chr1.3:56163167-56163186 | MS.gene005004:intron | 25.0% |
| !!! | TATATTGATGACTTTTAGGA+GGG | - | chr1.3:56164074-56164093 | MS.gene005004:intron | 25.0% |
| !!! | TGGCAACAGAAATTTTAAAA+AGG | + | chr1.3:56165555-56165574 | None:intergenic | 25.0% |
| !!! | TTAAGAAGATTTTTGACTCT+TGG | - | chr1.3:56163166-56163185 | MS.gene005004:intron | 25.0% |
| !!! | TTATATTGATGACTTTTAGG+AGG | - | chr1.3:56164073-56164092 | MS.gene005004:intron | 25.0% |
| !!! | TTTTCTTTGATAGAAAGCAT+CGG | + | chr1.3:56165846-56165865 | None:intergenic | 25.0% |
| !!! | TTTTTTCTGCATTTTAAGGA+AGG | + | chr1.3:56165160-56165179 | None:intergenic | 25.0% |
| AAACCCAAATAGAAAGAACA+GGG | + | chr1.3:56164530-56164549 | None:intergenic | 30.0% | |
| AACCAAGTTATTCAGATTTG+AGG | + | chr1.3:56163754-56163773 | None:intergenic | 30.0% | |
| AACTGTTATGAATTCAGTTC+TGG | + | chr1.3:56166233-56166252 | None:intergenic | 30.0% | |
| AAGAACTTTCCTGATAGTAA+CGG | + | chr1.3:56161559-56161578 | None:intergenic | 30.0% | |
| AATATATCCAGTAGCATGAT+AGG | - | chr1.3:56164014-56164033 | MS.gene005004:intron | 30.0% | |
| AATCAGCTTATGGTGATTTA+AGG | + | chr1.3:56163853-56163872 | None:intergenic | 30.0% | |
| AATGGCAAGCCTAAAAAAAT+GGG | + | chr1.3:56165073-56165092 | None:intergenic | 30.0% | |
| AATTCTAATGTGAATGAGGT+AGG | + | chr1.3:56165244-56165263 | None:intergenic | 30.0% | |
| ACCACATACTTGATTCTTAT+TGG | + | chr1.3:56162064-56162083 | None:intergenic | 30.0% | |
| AGGATCTGCAAAATAAACAA+AGG | + | chr1.3:56163037-56163056 | None:intergenic | 30.0% | |
| AGGGGAATGTACAAATTTAA+TGG | - | chr1.3:56164402-56164421 | MS.gene005004:intron | 30.0% | |
| ATATCCTCCTTATTGGTAAA+AGG | - | chr1.3:56163106-56163125 | MS.gene005004:intron | 30.0% | |
| ATCAGCTTATGGTGATTTAA+GGG | + | chr1.3:56163852-56163871 | None:intergenic | 30.0% | |
| ATGACATGCTTTCAAATGTA+AGG | - | chr1.3:56165470-56165489 | MS.gene005004:intron | 30.0% | |
| ATGGTAAACAAGTATTAGGA+TGG | - | chr1.3:56167619-56167638 | MS.gene005004:CDS | 30.0% | |
| ATTCCCTGTTCTTTCTATTT+GGG | - | chr1.3:56164524-56164543 | MS.gene005004:intron | 30.0% | |
| CATAGGTCATAAATTGATAG+AGG | - | chr1.3:56166140-56166159 | MS.gene005004:CDS | 30.0% | |
| CTTATTCAAAGCCTACAAAA+AGG | + | chr1.3:56163536-56163555 | None:intergenic | 30.0% | |
| CTTTACTTTGCCTGTATTTA+TGG | - | chr1.3:56165514-56165533 | MS.gene005004:intron | 30.0% | |
| GACATTTCAACCATAAATAC+AGG | + | chr1.3:56165527-56165546 | None:intergenic | 30.0% | |
| GCAAAAAATGTCTAGTACTT+TGG | + | chr1.3:56165364-56165383 | None:intergenic | 30.0% | |
| GGTTATAAATTGGGATTATG+TGG | - | chr1.3:56162087-56162106 | MS.gene005004:intron | 30.0% | |
| GTCCAACAAAATTAAGAAAG+GGG | - | chr1.3:56164384-56164403 | MS.gene005004:intron | 30.0% | |
| GTCGTATTCATTAATTGATG+TGG | + | chr1.3:56161885-56161904 | None:intergenic | 30.0% | |
| TAAATCACCATAAGCTGATT+TGG | - | chr1.3:56163853-56163872 | MS.gene005004:intron | 30.0% | |
| TAACTTGGTCAATTCAGTTA+AGG | - | chr1.3:56167466-56167485 | MS.gene005004:intron | 30.0% | |
| TAATGGCAAGCCTAAAAAAA+TGG | + | chr1.3:56165074-56165093 | None:intergenic | 30.0% | |
| TAATTAATATCACGGGTTTG+TGG | + | chr1.3:56163253-56163272 | None:intergenic | 30.0% | |
| TATCTGAAAATGCGACATTT+AGG | + | chr1.3:56166716-56166735 | None:intergenic | 30.0% | |
| TATTCCCTGTTCTTTCTATT+TGG | - | chr1.3:56164523-56164542 | MS.gene005004:intron | 30.0% | |
| TCAACATACTCTAATTCATG+TGG | + | chr1.3:56167042-56167061 | None:intergenic | 30.0% | |
| TCAGTACATGGGTATAATAT+TGG | + | chr1.3:56163972-56163991 | None:intergenic | 30.0% | |
| TCCAATAAGAATCAAGTATG+TGG | - | chr1.3:56162060-56162079 | MS.gene005004:intron | 30.0% | |
| TCTGTTCATCAACGTAAAAT+TGG | + | chr1.3:56167775-56167794 | None:intergenic | 30.0% | |
| TGAACCAATTCTCAAATTAG+TGG | + | chr1.3:56165575-56165594 | None:intergenic | 30.0% | |
| TGAACGTGTTAAACTCAAAT+TGG | - | chr1.3:56161608-56161627 | MS.gene005004:intron | 30.0% | |
| TGAAGAATTGTGTGGAAATT+GGG | + | chr1.3:56161425-56161444 | None:intergenic | 30.0% | |
| TGAATGGTTATACATTGTCT+GGG | + | chr1.3:56162157-56162176 | None:intergenic | 30.0% | |
| TGTTTCAGACTCAACTAAAT+AGG | + | chr1.3:56165403-56165422 | None:intergenic | 30.0% | |
| TTATGGAACAAAACATGTTG+AGG | - | chr1.3:56166791-56166810 | MS.gene005004:intron | 30.0% | |
| TTGAAGAATTGTGTGGAAAT+TGG | + | chr1.3:56161426-56161445 | None:intergenic | 30.0% | |
| TTGAATGGTTATACATTGTC+TGG | + | chr1.3:56162158-56162177 | None:intergenic | 30.0% | |
| TTTACCAATAAGGAGGATAT+GGG | + | chr1.3:56163106-56163125 | None:intergenic | 30.0% | |
| TTTCTTACTTAAATGGATGC+AGG | + | chr1.3:56162881-56162900 | None:intergenic | 30.0% | |
| TTTGCAATTGAAGAATTGTG+TGG | + | chr1.3:56161433-56161452 | None:intergenic | 30.0% | |
| ! | AAATCACCATAAGCTGATTT+GGG | - | chr1.3:56163854-56163873 | MS.gene005004:intron | 30.0% |
| ! | AATACCTTTTACCAATAAGG+AGG | + | chr1.3:56163113-56163132 | None:intergenic | 30.0% |
| ! | AATAGAAATCTAGCTAGCTT+AGG | - | chr1.3:56166262-56166281 | MS.gene005004:intron | 30.0% |
| ! | AGTAGTTCTATGAATTCACA+TGG | + | chr1.3:56162836-56162855 | None:intergenic | 30.0% |
| ! | CAGATATAAGTATGGGTTAA+AGG | - | chr1.3:56165983-56166002 | MS.gene005004:intron | 30.0% |
| ! | CCTACAAAGTTTTACATTGT+CGG | - | chr1.3:56162194-56162213 | MS.gene005004:intron | 30.0% |
| ! | GTATATAATTTGATAGCTCC+TGG | - | chr1.3:56161519-56161538 | MS.gene005004:intron | 30.0% |
| ! | TCACAAACCCATTTTCTATA+TGG | + | chr1.3:56163645-56163664 | None:intergenic | 30.0% |
| ! | TGAGGTGACATTTAGTTTAA+GGG | + | chr1.3:56166675-56166694 | None:intergenic | 30.0% |
| ! | TTCCCCTTTCTTAATTTTGT+TGG | + | chr1.3:56164389-56164408 | None:intergenic | 30.0% |
| ! | TTGAGGTGACATTTAGTTTA+AGG | + | chr1.3:56166676-56166695 | None:intergenic | 30.0% |
| ! | TTTTACCAATAAGGAGGATA+TGG | + | chr1.3:56163107-56163126 | None:intergenic | 30.0% |
| !! | ATGTGGTAGTGGTTATAAAT+TGG | - | chr1.3:56162077-56162096 | MS.gene005004:intron | 30.0% |
| !! | CAAGTTAACAAACTTTTTCC+TGG | + | chr1.3:56167453-56167472 | None:intergenic | 30.0% |
| !! | CAGGAAAAAGTTTGTTAACT+TGG | - | chr1.3:56167451-56167470 | MS.gene005004:intron | 30.0% |
| !! | GCGATTTGATGAGTTTTAAT+TGG | - | chr1.3:56162109-56162128 | MS.gene005004:intron | 30.0% |
| !! | GTAACTCAAGTTCTAAAGTA+TGG | + | chr1.3:56162472-56162491 | None:intergenic | 30.0% |
| !! | TGTGGTAGTGGTTATAAATT+GGG | - | chr1.3:56162078-56162097 | MS.gene005004:intron | 30.0% |
| !! | TTAACAAACTTTTTCCTGGT+AGG | + | chr1.3:56167449-56167468 | None:intergenic | 30.0% |
| !! | TTCTGATTTCTTTAGAGTGT+GGG | - | chr1.3:56167555-56167574 | MS.gene005004:intron | 30.0% |
| !! | TTTATTTTCAGCTTAGGCAT+TGG | - | chr1.3:56166491-56166510 | MS.gene005004:intron | 30.0% |
| !! | TTTCTGATTTCTTTAGAGTG+TGG | - | chr1.3:56167554-56167573 | MS.gene005004:intron | 30.0% |
| !! | TTTCTTTGATAGAAAGCATC+GGG | + | chr1.3:56165845-56165864 | None:intergenic | 30.0% |
| !!! | AAATTGGCTATTTTGATGCT+AGG | - | chr1.3:56166053-56166072 | MS.gene005004:intron | 30.0% |
| !!! | ATTCACACACTGTTGTTTTT+TGG | - | chr1.3:56165195-56165214 | MS.gene005004:intron | 30.0% |
| !!! | CGTGACTTGTTTTCAATAAT+AGG | + | chr1.3:56164753-56164772 | None:intergenic | 30.0% |
| !!! | TATGCAACGAGTATTTTTTG+AGG | - | chr1.3:56164967-56164986 | MS.gene005004:intron | 30.0% |
| !!! | TCAAGTTGTCCCATTTTTTT+AGG | - | chr1.3:56165061-56165080 | MS.gene005004:intron | 30.0% |
| !!! | TGATTGAATATTTTTCGGGT+GGG | - | chr1.3:56166747-56166766 | MS.gene005004:intron | 30.0% |
| !!! | TGTATCTTTTTTTGGTTCCA+GGG | - | chr1.3:56162285-56162304 | MS.gene005004:intron | 30.0% |
| !!! | TTGGTTTTTTGATACACAGA+TGG | - | chr1.3:56161467-56161486 | MS.gene005004:intron | 30.0% |
| !!! | TTGTATCTTTTTTTGGTTCC+AGG | - | chr1.3:56162284-56162303 | MS.gene005004:intron | 30.0% |
| AAGAATCAAGTATGTGGTAG+TGG | - | chr1.3:56162066-56162085 | MS.gene005004:intron | 35.0% | |
| AATTCAGTTAAGGATTCTGG+AGG | - | chr1.3:56167476-56167495 | MS.gene005004:intron | 35.0% | |
| AGAAAAGTCAAAGCCATCAA+AGG | + | chr1.3:56164277-56164296 | None:intergenic | 35.0% | |
| AGAATCATCAAACAGAGAGT+GGG | - | chr1.3:56166996-56167015 | MS.gene005004:intron | 35.0% | |
| AGCCTCTTGTGTAAAATACA+GGG | - | chr1.3:56164169-56164188 | MS.gene005004:intron | 35.0% | |
| ATAAACATCTCACGCTACAT+GGG | + | chr1.3:56163940-56163959 | None:intergenic | 35.0% | |
| ATACAACAGCATATCACATC+AGG | + | chr1.3:56164950-56164969 | None:intergenic | 35.0% | |
| ATGAATTCACATGGTTTCCA+TGG | + | chr1.3:56162827-56162846 | None:intergenic | 35.0% | |
| ATGCTATAGCAACATACTGT+TGG | + | chr1.3:56167080-56167099 | None:intergenic | 35.0% | |
| ATGTGGATCCACTAAATCAT+GGG | + | chr1.3:56167025-56167044 | None:intergenic | 35.0% | |
| ATTCAAAGCCTACAAAAAGG+AGG | + | chr1.3:56163533-56163552 | None:intergenic | 35.0% | |
| CACCCGAAAAATATTCAATC+AGG | + | chr1.3:56166748-56166767 | None:intergenic | 35.0% | |
| CATACACTAAAGGTAAACCT+AGG | + | chr1.3:56166594-56166613 | None:intergenic | 35.0% | |
| CATGAGAAATACAAGTCCTT+GGG | + | chr1.3:56163590-56163609 | None:intergenic | 35.0% | |
| CATGCATGGATGAAAATACA+TGG | + | chr1.3:56167508-56167527 | None:intergenic | 35.0% | |
| CATTAAGAAATGTGTGTGTG+TGG | + | chr1.3:56164586-56164605 | None:intergenic | 35.0% | |
| CCGACAATGTAAAACTTTGT+AGG | + | chr1.3:56162197-56162216 | None:intergenic | 35.0% | |
| CGACAACTAGTAAAAACATC+TGG | + | chr1.3:56166638-56166657 | None:intergenic | 35.0% | |
| CTCCTCAAATCTGAATAACT+TGG | - | chr1.3:56163749-56163768 | MS.gene005004:CDS | 35.0% | |
| CTGTAGGCATAGTTTAAAAG+AGG | - | chr1.3:56165270-56165289 | MS.gene005004:intron | 35.0% | |
| CTTGTGTAAAATACAGGGTA+AGG | - | chr1.3:56164174-56164193 | MS.gene005004:intron | 35.0% | |
| GAAAAGTCAAAGCCATCAAA+GGG | + | chr1.3:56164276-56164295 | None:intergenic | 35.0% | |
| GAAACCCAAATAGAAAGAAC+AGG | + | chr1.3:56164531-56164550 | None:intergenic | 35.0% | |
| GAACTGAAAACCGCAAATAA+TGG | - | chr1.3:56167600-56167619 | MS.gene005004:CDS | 35.0% | |
| GAGACATATAGATTTCAACG+TGG | - | chr1.3:56164453-56164472 | MS.gene005004:CDS | 35.0% | |
| GATAACCAATAACATACCAG+AGG | + | chr1.3:56162759-56162778 | None:intergenic | 35.0% | |
| GCAAAAGCTTAGACAAGATT+TGG | - | chr1.3:56164620-56164639 | MS.gene005004:intron | 35.0% | |
| GCATAGTTTAAAAGAGGTTC+TGG | - | chr1.3:56165276-56165295 | MS.gene005004:intron | 35.0% | |
| GTAACTTGGGTTATAAACAC+TGG | + | chr1.3:56165823-56165842 | None:intergenic | 35.0% | |
| GTCAATTCAGTTAAGGATTC+TGG | - | chr1.3:56167473-56167492 | MS.gene005004:intron | 35.0% | |
| GTTGCCACTAATTTGAGAAT+TGG | - | chr1.3:56165568-56165587 | MS.gene005004:intron | 35.0% | |
| TACAACAGCATATCACATCA+GGG | + | chr1.3:56164949-56164968 | None:intergenic | 35.0% | |
| TAGAATCATCAAACAGAGAG+TGG | - | chr1.3:56166995-56167014 | MS.gene005004:intron | 35.0% | |
| TATCGGTATCTACACTGTAT+CGG | - | chr1.3:56166563-56166582 | MS.gene005004:intron | 35.0% | |
| TATGTCACTATTTCCGTTAC+AGG | - | chr1.3:56164677-56164696 | MS.gene005004:intron | 35.0% | |
| TCAGCTTATGGTGATTTAAG+GGG | + | chr1.3:56163851-56163870 | None:intergenic | 35.0% | |
| TCTAGAGAATGAACATGTCA+AGG | - | chr1.3:56162359-56162378 | MS.gene005004:CDS | 35.0% | |
| TCTGCATTTGATAGAGTAGT+AGG | - | chr1.3:56163190-56163209 | MS.gene005004:intron | 35.0% | |
| TGATAGAGTAGTAGGATTGT+TGG | - | chr1.3:56163198-56163217 | MS.gene005004:intron | 35.0% | |
| TGCTTCTTTGTTACTCAAAG+AGG | - | chr1.3:56164298-56164317 | MS.gene005004:intron | 35.0% | |
| TGTCAAGGTAGTTAGTTAAC+AGG | - | chr1.3:56162374-56162393 | MS.gene005004:CDS | 35.0% | |
| TTAGTTTAAGGGAGAAACAC+AGG | + | chr1.3:56166664-56166683 | None:intergenic | 35.0% | |
| TTGATGTGGCAATACATCAT+TGG | + | chr1.3:56161871-56161890 | None:intergenic | 35.0% | |
| ! | AAAGCATCACAAGATCTCAT+AGG | - | chr1.3:56166123-56166142 | MS.gene005004:CDS | 35.0% |
| ! | ATCTAGTTCATGAGAAATGC+TGG | - | chr1.3:56166914-56166933 | MS.gene005004:intron | 35.0% |
| ! | ATTCAGATTTGAGGAGTACA+TGG | + | chr1.3:56163745-56163764 | None:intergenic | 35.0% |
| ! | ATTGTATTTTCCCCTTTACC+AGG | - | chr1.3:56165880-56165899 | MS.gene005004:intron | 35.0% |
| ! | ATTTGCGGTTTTCAGTTCAT+TGG | + | chr1.3:56167598-56167617 | None:intergenic | 35.0% |
| ! | ATTTGGGATGTAATGCAATC+CGG | - | chr1.3:56167342-56167361 | MS.gene005004:intron | 35.0% |
| ! | GAGTTTAAAAAAGCCTTGTG+AGG | - | chr1.3:56164860-56164879 | MS.gene005004:intron | 35.0% |
| ! | TACCCTGTATTTTACACAAG+AGG | + | chr1.3:56164174-56164193 | None:intergenic | 35.0% |
| ! | TCATTGATTGAAGGCAAAAG+TGG | - | chr1.3:56166457-56166476 | MS.gene005004:intron | 35.0% |
| ! | TCATTGCAGATTCTCTTTTC+AGG | - | chr1.3:56166847-56166866 | MS.gene005004:CDS | 35.0% |
| ! | TCGGCTTGTAATATGATTGT+TGG | - | chr1.3:56162981-56163000 | MS.gene005004:intron | 35.0% |
| ! | TGGTCTATCTCATTGATTGA+AGG | - | chr1.3:56166448-56166467 | MS.gene005004:intron | 35.0% |
| ! | TTGGGTATCAAGTACTGTAT+CGG | - | chr1.3:56166546-56166565 | MS.gene005004:intron | 35.0% |
| ! | TTGTATTTTCCCCTTTACCA+GGG | - | chr1.3:56165881-56165900 | MS.gene005004:intron | 35.0% |
| ! | TTTAAGGAAGGCATGAGATT+TGG | + | chr1.3:56165148-56165167 | None:intergenic | 35.0% |
| !! | ACTTTACCGTTACCTTGTTT+TGG | + | chr1.3:56164105-56164124 | None:intergenic | 35.0% |
| !! | ATCTGCATGCTTTTGGTTAT+AGG | - | chr1.3:56167411-56167430 | MS.gene005004:intron | 35.0% |
| !! | CTTTAGAACTTGAGTTACAG+CGG | - | chr1.3:56162474-56162493 | MS.gene005004:intron | 35.0% |
| !! | GTTCTTTGAGAATGTTTTGC+AGG | - | chr1.3:56163555-56163574 | MS.gene005004:intron | 35.0% |
| !! | GTTTCACCGTCACTTATTTT+TGG | - | chr1.3:56164704-56164723 | MS.gene005004:intron | 35.0% |
| !!! | ACACACTGTTGTTTTTTGGA+TGG | - | chr1.3:56165199-56165218 | MS.gene005004:intron | 35.0% |
| !!! | ACATCAAAAGGAGCATTTTC+CGG | + | chr1.3:56167364-56167383 | None:intergenic | 35.0% |
| !!! | CTGATTGAATATTTTTCGGG+TGG | - | chr1.3:56166746-56166765 | MS.gene005004:CDS | 35.0% |
| !!! | GTCTAGTACTTTGGTTTTGA+CGG | + | chr1.3:56165355-56165374 | None:intergenic | 35.0% |
| !!! | TATTTTTGGAGGCAGAAAGA+AGG | - | chr1.3:56164718-56164737 | MS.gene005004:CDS | 35.0% |
| AATCACAGTCCACATCTGTT+CGG | - | chr1.3:56162962-56162981 | MS.gene005004:intron | 40.0% | |
| AATTGAACCTTAACGCTTCC+AGG | + | chr1.3:56161395-56161414 | None:intergenic | 40.0% | |
| ACAGAACTAGAGCAGATAAG+TGG | - | chr1.3:56167790-56167809 | MS.gene005004:intron | 40.0% | |
| ATGAAGTCGCATCGTATCAT+TGG | + | chr1.3:56163825-56163844 | None:intergenic | 40.0% | |
| ATTACCTTCCTGAGCACAAA+AGG | + | chr1.3:56162500-56162519 | None:intergenic | 40.0% | |
| CAAAAAGTGGGAAGGAAGAA+AGG | + | chr1.3:56167667-56167686 | None:intergenic | 40.0% | |
| CAAATGCTAGTTACCTCACA+AGG | + | chr1.3:56164876-56164895 | None:intergenic | 40.0% | |
| CAGCCTCTTGTGTAAAATAC+AGG | - | chr1.3:56164168-56164187 | MS.gene005004:intron | 40.0% | |
| CATAAACATCTCACGCTACA+TGG | + | chr1.3:56163941-56163960 | None:intergenic | 40.0% | |
| CATAGATCATCTGAATCCAC+TGG | + | chr1.3:56161495-56161514 | None:intergenic | 40.0% | |
| CATGTGGATCCACTAAATCA+TGG | + | chr1.3:56167026-56167045 | None:intergenic | 40.0% | |
| CGTGAGATGTTTATGCTACA+TGG | - | chr1.3:56163946-56163965 | MS.gene005004:intron | 40.0% | |
| CTAGTGACTAAAGAAGGAGA+AGG | + | chr1.3:56163800-56163819 | None:intergenic | 40.0% | |
| CTGCCTCCAAAAATAAGTGA+CGG | + | chr1.3:56164713-56164732 | None:intergenic | 40.0% | |
| CTTCAATTCCTCGTAAGCAT+GGG | - | chr1.3:56163394-56163413 | MS.gene005004:intron | 40.0% | |
| GCATGAGAAATACAAGTCCT+TGG | + | chr1.3:56163591-56163610 | None:intergenic | 40.0% | |
| GTATATTGCTGTGACATCCT+TGG | - | chr1.3:56167167-56167186 | MS.gene005004:intron | 40.0% | |
| GTCACAACTCACAACCATTA+CGG | + | chr1.3:56161711-56161730 | None:intergenic | 40.0% | |
| GTCTCAAGAATGCCTAAAAC+AGG | + | chr1.3:56164438-56164457 | None:intergenic | 40.0% | |
| GTGGTATTGCTGCAATTCTT+CGG | - | chr1.3:56167809-56167828 | MS.gene005004:intron | 40.0% | |
| GTGTAAAATACAGGGTAAGG+CGG | - | chr1.3:56164177-56164196 | MS.gene005004:intron | 40.0% | |
| GTTCTTAGAGAAGCAGCTAA+TGG | - | chr1.3:56161573-56161592 | MS.gene005004:intron | 40.0% | |
| TATATACACTGTCGCCGTAA+TGG | - | chr1.3:56161694-56161713 | MS.gene005004:CDS | 40.0% | |
| TATTACAAGCCGAACAGATG+TGG | + | chr1.3:56162974-56162993 | None:intergenic | 40.0% | |
| TGGTTTCCATGGACACATAT+TGG | + | chr1.3:56162816-56162835 | None:intergenic | 40.0% | |
| TGTGGATCCACTAAATCATG+GGG | + | chr1.3:56167024-56167043 | None:intergenic | 40.0% | |
| TTAGCCCATATCCTCCTTAT+TGG | - | chr1.3:56163099-56163118 | MS.gene005004:intron | 40.0% | |
| TTCCATGGACACATATTGGT+AGG | + | chr1.3:56162812-56162831 | None:intergenic | 40.0% | |
| TTCCTACCAATATGTGTCCA+TGG | - | chr1.3:56162807-56162826 | MS.gene005004:intron | 40.0% | |
| TTGCAGGTAAATTCTTCCCA+AGG | - | chr1.3:56163571-56163590 | MS.gene005004:intron | 40.0% | |
| TTGGCACTAGTGACTAAAGA+AGG | + | chr1.3:56163806-56163825 | None:intergenic | 40.0% | |
| ! | AGCATTGTCCTCCTTTTTGT+AGG | - | chr1.3:56163522-56163541 | MS.gene005004:intron | 40.0% |
| ! | CAGGCGTGTTTGATTTATGT+GGG | - | chr1.3:56163224-56163243 | MS.gene005004:intron | 40.0% |
| ! | CAGTGGATTCAGATGATCTA+TGG | - | chr1.3:56161493-56161512 | MS.gene005004:intron | 40.0% |
| ! | GATTCATCACGTGCTTGTTA+TGG | - | chr1.3:56166774-56166793 | MS.gene005004:intron | 40.0% |
| ! | GATTGTGTTTTGCCTTTCGT+AGG | - | chr1.3:56162694-56162713 | MS.gene005004:intron | 40.0% |
| ! | GGTGTGGATTATGACAAAGA+AGG | - | chr1.3:56162306-56162325 | MS.gene005004:intron | 40.0% |
| ! | TCAGGCGTGTTTGATTTATG+TGG | - | chr1.3:56163223-56163242 | MS.gene005004:intron | 40.0% |
| ! | TCTTCAGGTTCGAATTCTGA+AGG | - | chr1.3:56165441-56165460 | MS.gene005004:intron | 40.0% |
| ! | TGCTTGTTAGCTTGGGATTT+GGG | - | chr1.3:56167326-56167345 | MS.gene005004:intron | 40.0% |
| ! | TGTCTGCCTCTCTTTTACAA+TGG | - | chr1.3:56163451-56163470 | MS.gene005004:intron | 40.0% |
| ! | TGTCTGGGATTCTTATGCTT+TGG | - | chr1.3:56162718-56162737 | MS.gene005004:intron | 40.0% |
| ! | TTTGACTACTTGCTGCAGAT+AGG | - | chr1.3:56162440-56162459 | MS.gene005004:intron | 40.0% |
| ! | TTTTCATCCATGCATGTCTC+TGG | - | chr1.3:56167512-56167531 | MS.gene005004:intron | 40.0% |
| !! | ATAGAAAGCATCGGGTAACT+TGG | + | chr1.3:56165837-56165856 | None:intergenic | 40.0% |
| !! | GGAGGACAATGCTTTAGAAA+TGG | + | chr1.3:56163515-56163534 | None:intergenic | 40.0% |
| !! | TAGAAAGCATCGGGTAACTT+GGG | + | chr1.3:56165836-56165855 | None:intergenic | 40.0% |
| !! | TTCAGTTCTGGACAGTTACA+TGG | + | chr1.3:56166221-56166240 | None:intergenic | 40.0% |
| !!! | CTTCCTTCCCACTTTTTGTT+GGG | - | chr1.3:56167669-56167688 | MS.gene005004:CDS | 40.0% |
| !!! | GTTTTTTGGATGGACTTTGC+TGG | - | chr1.3:56165209-56165228 | MS.gene005004:intron | 40.0% |
| !!! | TACCGTTACCTTGTTTTGGA+GGG | + | chr1.3:56164101-56164120 | None:intergenic | 40.0% |
| !!! | TCACCGTCACTTATTTTTGG+AGG | - | chr1.3:56164707-56164726 | MS.gene005004:intron | 40.0% |
| !!! | TCTTCCTTCCCACTTTTTGT+TGG | - | chr1.3:56167668-56167687 | MS.gene005004:CDS | 40.0% |
| !!! | TTACCGTTACCTTGTTTTGG+AGG | + | chr1.3:56164102-56164121 | None:intergenic | 40.0% |
| !!! | TTCCTTCCCACTTTTTGTTG+GGG | - | chr1.3:56167670-56167689 | MS.gene005004:CDS | 40.0% |
| AAAATGATAGGACCCCTTCC+CGG | - | chr1.3:56164214-56164233 | MS.gene005004:intron | 45.0% | |
| AATCCCAGACATCCTACGAA+AGG | + | chr1.3:56162709-56162728 | None:intergenic | 45.0% | |
| ACGACCTCAGGATACAAGTA+CGG | - | chr1.3:56164789-56164808 | MS.gene005004:intron | 45.0% | |
| AGACACACATGCTCAGTACA+TGG | + | chr1.3:56163984-56164003 | None:intergenic | 45.0% | |
| AGATACTAAGGCAGCACAAG+AGG | - | chr1.3:56165327-56165346 | MS.gene005004:intron | 45.0% | |
| AGCTCCTGGTGATTCAATCA+TGG | - | chr1.3:56161533-56161552 | MS.gene005004:intron | 45.0% | |
| ATCCCCAACAAAAAGTGGGA+AGG | + | chr1.3:56167675-56167694 | None:intergenic | 45.0% | |
| ATCTCACGCTACATGGGTAT+GGG | + | chr1.3:56163934-56163953 | None:intergenic | 45.0% | |
| ATCTCCATGTCTTCGAGATC+AGG | + | chr1.3:56167844-56167863 | None:intergenic | 45.0% | |
| CAAATCCCAAGCTAACAAGC+AGG | + | chr1.3:56167327-56167346 | None:intergenic | 45.0% | |
| CAATCATGGCCGTTACTATC+AGG | - | chr1.3:56161547-56161566 | MS.gene005004:intron | 45.0% | |
| CAGCATCCCCAACAAAAAGT+GGG | + | chr1.3:56167679-56167698 | None:intergenic | 45.0% | |
| CGAAAAGACTTTGTGCGCAA+TGG | - | chr1.3:56161368-56161387 | MS.gene005004:CDS | 45.0% | |
| CGGTGAAACTGATCCTGTAA+CGG | + | chr1.3:56164693-56164712 | None:intergenic | 45.0% | |
| CTGGGATTCTTATGCTTTGG+AGG | - | chr1.3:56162721-56162740 | MS.gene005004:intron | 45.0% | |
| CTTAGAGAAGCAGCTAATGG+TGG | - | chr1.3:56161576-56161595 | MS.gene005004:intron | 45.0% | |
| CTTTCGTAACCAGCAATAGC+AGG | + | chr1.3:56163420-56163439 | None:intergenic | 45.0% | |
| CTTTGTCATAATCCACACCC+TGG | + | chr1.3:56162305-56162324 | None:intergenic | 45.0% | |
| GACACACATGCTCAGTACAT+GGG | + | chr1.3:56163983-56164002 | None:intergenic | 45.0% | |
| GACCCTCCAAAACAAGGTAA+CGG | - | chr1.3:56164096-56164115 | MS.gene005004:intron | 45.0% | |
| GCTTCAATTCCTCGTAAGCA+TGG | - | chr1.3:56163393-56163412 | MS.gene005004:intron | 45.0% | |
| GGAATGCAGATATACCTACC+AGG | - | chr1.3:56167432-56167451 | MS.gene005004:intron | 45.0% | |
| GTATGACTGTTACTCGTTCG+CGG | - | chr1.3:56163364-56163383 | MS.gene005004:intron | 45.0% | |
| GTATGGGACTGACATTAAGG+CGG | + | chr1.3:56163918-56163937 | None:intergenic | 45.0% | |
| GTGGATCCACTAAATCATGG+GGG | + | chr1.3:56167023-56167042 | None:intergenic | 45.0% | |
| GTGGGAAGGAAGAAAGGAAA+TGG | + | chr1.3:56167661-56167680 | None:intergenic | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr1.3:56164123-56164142 | MS.gene005004:intron | 45.0% | |
| TAGCCATCTTCACGACTTTG+AGG | + | chr1.3:56166693-56166712 | None:intergenic | 45.0% | |
| TCAACTAACCTTCAGCGAGT+TGG | - | chr1.3:56166180-56166199 | MS.gene005004:intron | 45.0% | |
| TCACCTCAAAGTCGTGAAGA+TGG | - | chr1.3:56166687-56166706 | MS.gene005004:intron | 45.0% | |
| TCTCCATGTCTTCGAGATCA+GGG | + | chr1.3:56167843-56167862 | None:intergenic | 45.0% | |
| TGCTGTGACATCCTTGGAAA+TGG | - | chr1.3:56167173-56167192 | MS.gene005004:intron | 45.0% | |
| TGGGTATGGGACTGACATTA+AGG | + | chr1.3:56163921-56163940 | None:intergenic | 45.0% | |
| TGTGCTGTAATTGCAAGTCC+TGG | - | chr1.3:56164481-56164500 | MS.gene005004:CDS | 45.0% | |
| TTGCCTTTCGTAGGATGTCT+GGG | - | chr1.3:56162703-56162722 | MS.gene005004:intron | 45.0% | |
| TTTGCCTTTCGTAGGATGTC+TGG | - | chr1.3:56162702-56162721 | MS.gene005004:intron | 45.0% | |
| ! | ACACTGTATCGGTATCTCCT+AGG | - | chr1.3:56166574-56166593 | MS.gene005004:intron | 45.0% |
| ! | ACCATCCTGCTTGTTAGCTT+GGG | - | chr1.3:56167319-56167338 | MS.gene005004:intron | 45.0% |
| ! | CTGCTTGTTAGCTTGGGATT+TGG | - | chr1.3:56167325-56167344 | MS.gene005004:intron | 45.0% |
| ! | GGAAGGGGTCCTATCATTTT+TGG | + | chr1.3:56164214-56164233 | None:intergenic | 45.0% |
| ! | GGATTCTGCTGTCCTGTTTT+AGG | - | chr1.3:56164423-56164442 | MS.gene005004:CDS | 45.0% |
| ! | GTAGTAGGATTGTTGGTGTC+AGG | - | chr1.3:56163205-56163224 | MS.gene005004:intron | 45.0% |
| ! | TACCATCCTGCTTGTTAGCT+TGG | - | chr1.3:56167318-56167337 | MS.gene005004:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.3:56164163-56164182 | None:intergenic | 45.0% |
| !! | GGGTGGCTCTAGATCTAAAT+TGG | - | chr1.3:56163874-56163893 | MS.gene005004:intron | 45.0% |
| !! | TCACCATAAGCTGATTTGGG+TGG | - | chr1.3:56163857-56163876 | MS.gene005004:intron | 45.0% |
| !! | TTTTGGATGGACTTTGCTGG+TGG | - | chr1.3:56165212-56165231 | MS.gene005004:intron | 45.0% |
| !!! | CTTTTTTTGGTTCCAGGGTG+TGG | - | chr1.3:56162290-56162309 | MS.gene005004:intron | 45.0% |
| !!! | GAATATTTTTCGGGTGGGAC+AGG | - | chr1.3:56166752-56166771 | MS.gene005004:intron | 45.0% |
| !! | TTTATTATGTAATAATAATA+GGG | - | chr1.3:56162235-56162254 | MS.gene005004:intron | 5.0% |
| ACGGCCATGATTGAATCACC+AGG | + | chr1.3:56161540-56161559 | None:intergenic | 50.0% | |
| ACGTTCTCCAGAGACATGCA+TGG | + | chr1.3:56167522-56167541 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr1.3:56164242-56164261 | None:intergenic | 50.0% | |
| AGTTCCCTTGCCCTGGTAAA+GGG | + | chr1.3:56165894-56165913 | None:intergenic | 50.0% | |
| ATAACATACCAGAGGCCTGC+TGG | + | chr1.3:56162751-56162770 | None:intergenic | 50.0% | |
| ATCCAGGCCTATCATGCTAC+TGG | + | chr1.3:56164024-56164043 | None:intergenic | 50.0% | |
| ATCCAGTAGCATGATAGGCC+TGG | - | chr1.3:56164019-56164038 | MS.gene005004:intron | 50.0% | |
| ATGTCTTCGAGATCAGGGAG+AGG | + | chr1.3:56167838-56167857 | None:intergenic | 50.0% | |
| ATTCTCACTCACACGACCTC+AGG | - | chr1.3:56164777-56164796 | MS.gene005004:intron | 50.0% | |
| CATCTCACGCTACATGGGTA+TGG | + | chr1.3:56163935-56163954 | None:intergenic | 50.0% | |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr1.3:56164241-56164260 | None:intergenic | 50.0% | |
| GAGCCACCCAAATCAGCTTA+TGG | + | chr1.3:56163863-56163882 | None:intergenic | 50.0% | |
| GCAACCGTACTTGTATCCTG+AGG | + | chr1.3:56164796-56164815 | None:intergenic | 50.0% | |
| GCAGCATCCCCAACAAAAAG+TGG | + | chr1.3:56167680-56167699 | None:intergenic | 50.0% | |
| GCAGGCCTCTGGTATGTTAT+TGG | - | chr1.3:56162751-56162770 | MS.gene005004:intron | 50.0% | |
| GTCACGTGACTGAAAGGTCA+CGG | - | chr1.3:56164129-56164148 | MS.gene005004:intron | 50.0% | |
| TAGTTCCCTTGCCCTGGTAA+AGG | + | chr1.3:56165895-56165914 | None:intergenic | 50.0% | |
| TCACGTGACTGAAAGGTCAC+GGG | - | chr1.3:56164130-56164149 | MS.gene005004:intron | 50.0% | |
| TCCCAAGCTAACAAGCAGGA+TGG | + | chr1.3:56167323-56167342 | None:intergenic | 50.0% | |
| TCTCCCTGATCTCGAAGACA+TGG | - | chr1.3:56167837-56167856 | MS.gene005004:CDS | 50.0% | |
| TTGAAGTAGTTCCCTTGCCC+TGG | + | chr1.3:56165901-56165920 | None:intergenic | 50.0% | |
| TTGCACAGCTAGGCGTTCAT+GGG | + | chr1.3:56166820-56166839 | None:intergenic | 50.0% | |
| TTTCCCCTTTACCAGGGCAA+GGG | - | chr1.3:56165887-56165906 | MS.gene005004:intron | 50.0% | |
| TTTGCACAGCTAGGCGTTCA+TGG | + | chr1.3:56166821-56166840 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+TGG | - | chr1.3:56164246-56164265 | MS.gene005004:intron | 50.0% |
| ! | TGATACACAGATGGTGCCAG+TGG | - | chr1.3:56161476-56161495 | MS.gene005004:intron | 50.0% |
| ! | TGCAGGAGCTTTAGTGCACT+GGG | - | chr1.3:56164247-56164266 | MS.gene005004:intron | 50.0% |
| ! | TTTTCCCCTTTACCAGGGCA+AGG | - | chr1.3:56165886-56165905 | MS.gene005004:intron | 50.0% |
| !! | CAATGGACCTGGAAGCGTTA+AGG | - | chr1.3:56161385-56161404 | MS.gene005004:CDS | 50.0% |
| !! | GCTGTGGTGTTGATGCAAGA+AGG | - | chr1.3:56163075-56163094 | MS.gene005004:intron | 50.0% |
| !! | TGAGAAGCGTTTGCACAGCT+AGG | + | chr1.3:56166830-56166849 | None:intergenic | 50.0% |
| !! | TGCAAGTGCTGATCTAGCTG+TGG | - | chr1.3:56163059-56163078 | MS.gene005004:intron | 50.0% |
| AAGCATGGGCCTGCTATTGC+TGG | - | chr1.3:56163408-56163427 | MS.gene005004:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1.3:56164142-56164161 | MS.gene005004:intron | 55.0% | |
| AGGAGGGACCCTCCAAAACA+AGG | - | chr1.3:56164090-56164109 | MS.gene005004:intron | 55.0% | |
| ATAGCAGGCCCATGCTTACG+AGG | + | chr1.3:56163405-56163424 | None:intergenic | 55.0% | |
| CTTCCCGCGAACACGCAAAA+CGG | + | chr1.3:56162334-56162353 | None:intergenic | 55.0% | |
| GACTTTGTGCGCAATGGACC+TGG | - | chr1.3:56161374-56161393 | MS.gene005004:CDS | 55.0% | |
| GAGACACGACATCGTCATCC+AGG | + | chr1.3:56164040-56164059 | None:intergenic | 55.0% | |
| GCTAGATCAGCACTTGCAGC+AGG | + | chr1.3:56163057-56163076 | None:intergenic | 55.0% | |
| GCTGAATGCCAACTCGCTGA+AGG | + | chr1.3:56166191-56166210 | None:intergenic | 55.0% | |
| GTGGGACCCCCATGATTTAG+TGG | - | chr1.3:56167014-56167033 | MS.gene005004:intron | 55.0% | |
| GTTCCCTTGCCCTGGTAAAG+GGG | + | chr1.3:56165893-56165912 | None:intergenic | 55.0% | |
| TGCACTGGGCTTCCCTTTGA+TGG | - | chr1.3:56164261-56164280 | MS.gene005004:intron | 55.0% | |
| ! | GGTTCCGTTTTGCGTGTTCG+CGG | - | chr1.3:56162327-56162346 | MS.gene005004:intron | 55.0% |
| ! | GTTCCGTTTTGCGTGTTCGC+GGG | - | chr1.3:56162328-56162347 | MS.gene005004:intron | 55.0% |
| ! | TACAGCGGCCTTTTGTGCTC+AGG | - | chr1.3:56162489-56162508 | MS.gene005004:intron | 55.0% |
| !! | TGCTTTGGAGGTACTCCAGC+AGG | - | chr1.3:56162733-56162752 | MS.gene005004:intron | 55.0% |
| ! | GCGGCCTTTTGTGCTCAGGA+AGG | - | chr1.3:56162493-56162512 | MS.gene005004:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1.3:56164229-56164248 | None:intergenic | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr1.3:56164235-56164254 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1.3:56164230-56164249 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr1.3:56164236-56164255 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | + | chr1.3:56164231-56164250 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | - | chr1.3:56164230-56164249 | MS.gene005004:intron | 65.0% | |
| ! | GAGGTACTCCAGCAGGCCTC+TGG | - | chr1.3:56162740-56162759 | MS.gene005004:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 56161356 | 56167867 | 56161356 | ID=MS.gene005004 |
| chr1.3 | mRNA | 56161356 | 56167867 | 56161356 | ID=MS.gene005004.t1;Parent=MS.gene005004 |
| chr1.3 | exon | 56167823 | 56167867 | 56167823 | ID=MS.gene005004.t1.exon1;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56167823 | 56167867 | 56167823 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56167576 | 56167737 | 56167576 | ID=MS.gene005004.t1.exon2;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56167576 | 56167737 | 56167576 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56166843 | 56166917 | 56166843 | ID=MS.gene005004.t1.exon3;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56166843 | 56166917 | 56166843 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56166709 | 56166765 | 56166709 | ID=MS.gene005004.t1.exon4;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56166709 | 56166765 | 56166709 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56166462 | 56166507 | 56166462 | ID=MS.gene005004.t1.exon5;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56166462 | 56166507 | 56166462 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56166096 | 56166171 | 56166096 | ID=MS.gene005004.t1.exon6;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56166096 | 56166171 | 56166096 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56165783 | 56165858 | 56165783 | ID=MS.gene005004.t1.exon7;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56165783 | 56165858 | 56165783 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56165647 | 56165679 | 56165647 | ID=MS.gene005004.t1.exon8;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56165647 | 56165679 | 56165647 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56164710 | 56164778 | 56164710 | ID=MS.gene005004.t1.exon9;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56164710 | 56164778 | 56164710 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56164418 | 56164524 | 56164418 | ID=MS.gene005004.t1.exon10;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56164418 | 56164524 | 56164418 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56163875 | 56163947 | 56163875 | ID=MS.gene005004.t1.exon11;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56163875 | 56163947 | 56163875 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56163737 | 56163775 | 56163737 | ID=MS.gene005004.t1.exon12;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56163737 | 56163775 | 56163737 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56162355 | 56162449 | 56162355 | ID=MS.gene005004.t1.exon13;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56162355 | 56162449 | 56162355 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56161684 | 56161790 | 56161684 | ID=MS.gene005004.t1.exon14;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56161684 | 56161790 | 56161684 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| chr1.3 | exon | 56161356 | 56161429 | 56161356 | ID=MS.gene005004.t1.exon15;Parent=MS.gene005004.t1 |
| chr1.3 | CDS | 56161356 | 56161429 | 56161356 | ID=cds.MS.gene005004.t1;Parent=MS.gene005004.t1 |
| Gene Sequence |
| Protein sequence |
