Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005505.t1 | RHN81020.1 | 78.7 | 469 | 97 | 1 | 1 | 466 | 60 | 528 | 1.80E-205 | 725.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005505.t1 | Q9FZ24 | 42.3 | 452 | 248 | 6 | 29 | 467 | 69 | 520 | 2.1e-93 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005505.t1 | G7ICW4 | 78.7 | 469 | 97 | 1 | 1 | 466 | 1 | 469 | 1.3e-205 | 725.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005505 | MS.gene067932 | PPI |
| MS.gene69362 | MS.gene005505 | PPI |
| MS.gene067938 | MS.gene005505 | PPI |
| MS.gene005505 | MS.gene056432 | PPI |
| MS.gene005505 | MS.gene068108 | PPI |
| MS.gene014383 | MS.gene005505 | PPI |
| MS.gene068115 | MS.gene005505 | PPI |
| MS.gene008872 | MS.gene005505 | PPI |
| MS.gene064795 | MS.gene005505 | PPI |
| MS.gene005505 | MS.gene52807 | PPI |
| MS.gene008863 | MS.gene005505 | PPI |
| MS.gene005505 | MS.gene008871 | PPI |
| MS.gene068116 | MS.gene005505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005505.t1 | MTR_1g086820 | 78.678 | 469 | 97 | 1 | 1 | 466 | 1 | 469 | 0.0 | 749 |
| MS.gene005505.t1 | MTR_8g069570 | 38.018 | 434 | 254 | 6 | 46 | 465 | 38 | 470 | 8.44e-88 | 277 |
| MS.gene005505.t1 | MTR_2g013450 | 27.753 | 454 | 309 | 7 | 28 | 466 | 25 | 474 | 6.82e-55 | 191 |
| MS.gene005505.t1 | MTR_8g007375 | 32.659 | 346 | 231 | 2 | 99 | 442 | 16 | 361 | 1.59e-52 | 182 |
| MS.gene005505.t1 | MTR_2g047855 | 28.085 | 470 | 315 | 10 | 13 | 469 | 19 | 478 | 3.91e-51 | 181 |
| MS.gene005505.t1 | MTR_1g072300 | 29.234 | 431 | 290 | 8 | 20 | 439 | 25 | 451 | 3.96e-49 | 176 |
| MS.gene005505.t1 | MTR_8g465890 | 29.002 | 431 | 285 | 7 | 14 | 433 | 16 | 436 | 1.48e-48 | 174 |
| MS.gene005505.t1 | MTR_3g099753 | 27.427 | 412 | 291 | 4 | 20 | 423 | 26 | 437 | 1.52e-44 | 163 |
| MS.gene005505.t1 | MTR_3g099753 | 27.427 | 412 | 291 | 4 | 20 | 423 | 50 | 461 | 2.86e-44 | 163 |
| MS.gene005505.t1 | MTR_8g059115 | 27.326 | 344 | 248 | 2 | 98 | 439 | 14 | 357 | 3.77e-40 | 149 |
| MS.gene005505.t1 | MTR_2g090290 | 29.573 | 328 | 215 | 5 | 51 | 364 | 52 | 377 | 6.46e-38 | 144 |
| MS.gene005505.t1 | MTR_1g022400 | 26.888 | 331 | 230 | 6 | 46 | 364 | 69 | 399 | 5.36e-32 | 126 |
| MS.gene005505.t1 | MTR_8g031520 | 33.333 | 204 | 125 | 3 | 29 | 221 | 97 | 300 | 1.41e-25 | 106 |
| MS.gene005505.t1 | MTR_7g089770 | 23.559 | 399 | 286 | 11 | 38 | 428 | 163 | 550 | 3.68e-20 | 94.0 |
| MS.gene005505.t1 | MTR_1g050750 | 24.595 | 309 | 224 | 7 | 38 | 339 | 97 | 403 | 5.81e-17 | 84.0 |
| MS.gene005505.t1 | MTR_2g096880 | 23.913 | 322 | 227 | 8 | 17 | 330 | 35 | 346 | 2.44e-16 | 81.6 |
| MS.gene005505.t1 | MTR_8g080940 | 23.600 | 250 | 186 | 5 | 125 | 372 | 597 | 843 | 6.63e-11 | 65.1 |
| MS.gene005505.t1 | MTR_8g080940 | 23.600 | 250 | 186 | 5 | 125 | 372 | 799 | 1045 | 7.32e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005505.t1 | AT1G02370 | 38.846 | 520 | 265 | 7 | 1 | 467 | 1 | 520 | 3.03e-118 | 357 |
| MS.gene005505.t1 | AT4G01990 | 41.928 | 446 | 239 | 8 | 11 | 437 | 6 | 450 | 6.45e-111 | 337 |
| MS.gene005505.t1 | AT1G60770 | 36.080 | 449 | 272 | 8 | 33 | 469 | 25 | 470 | 3.25e-82 | 263 |
| MS.gene005505.t1 | AT1G02150 | 32.446 | 413 | 272 | 3 | 33 | 438 | 69 | 481 | 1.08e-67 | 226 |
| MS.gene005505.t1 | AT4G21705 | 29.594 | 419 | 288 | 5 | 28 | 439 | 22 | 440 | 7.61e-59 | 201 |
| MS.gene005505.t1 | AT5G27460 | 30.175 | 401 | 268 | 6 | 39 | 427 | 44 | 444 | 8.20e-51 | 180 |
| MS.gene005505.t1 | AT2G20710 | 28.087 | 413 | 287 | 5 | 32 | 438 | 39 | 447 | 3.69e-49 | 175 |
| MS.gene005505.t1 | AT4G02820 | 27.991 | 443 | 302 | 8 | 8 | 442 | 41 | 474 | 3.89e-47 | 171 |
| MS.gene005505.t1 | AT2G20710 | 29.240 | 342 | 236 | 4 | 99 | 438 | 15 | 352 | 9.85e-44 | 159 |
| MS.gene005505.t1 | AT5G09450 | 30.556 | 324 | 210 | 7 | 25 | 336 | 49 | 369 | 8.46e-39 | 145 |
| MS.gene005505.t1 | AT1G28020 | 27.937 | 315 | 219 | 5 | 50 | 356 | 55 | 369 | 1.89e-30 | 124 |
| MS.gene005505.t1 | AT1G80270 | 25.869 | 259 | 183 | 6 | 39 | 291 | 136 | 391 | 5.55e-21 | 96.3 |
| MS.gene005505.t1 | AT1G80270 | 25.869 | 259 | 183 | 6 | 39 | 291 | 136 | 391 | 5.55e-21 | 96.3 |
| MS.gene005505.t1 | AT1G80270 | 25.869 | 259 | 183 | 6 | 39 | 291 | 136 | 391 | 5.55e-21 | 96.3 |
| MS.gene005505.t1 | AT1G80270 | 25.869 | 259 | 183 | 6 | 39 | 291 | 136 | 391 | 5.55e-21 | 96.3 |
| MS.gene005505.t1 | AT1G80270 | 25.869 | 259 | 183 | 6 | 39 | 291 | 136 | 391 | 5.55e-21 | 96.3 |
| MS.gene005505.t1 | AT3G15590 | 27.953 | 254 | 170 | 7 | 45 | 290 | 155 | 403 | 1.47e-19 | 92.0 |
| MS.gene005505.t1 | AT3G15590 | 27.953 | 254 | 170 | 7 | 45 | 290 | 155 | 403 | 1.47e-19 | 92.0 |
| MS.gene005505.t1 | AT1G15480 | 25.685 | 292 | 205 | 7 | 38 | 321 | 133 | 420 | 2.30e-19 | 91.3 |
| MS.gene005505.t1 | AT3G11380 | 26.733 | 303 | 183 | 6 | 70 | 364 | 82 | 353 | 1.00e-18 | 89.4 |
| MS.gene005505.t1 | AT3G11380 | 32.386 | 176 | 112 | 5 | 51 | 219 | 366 | 541 | 1.04e-11 | 67.4 |
| MS.gene005505.t1 | AT1G07590 | 24.000 | 325 | 235 | 6 | 44 | 360 | 78 | 398 | 1.62e-17 | 85.5 |
| MS.gene005505.t1 | AT5G21222 | 28.652 | 178 | 120 | 5 | 127 | 299 | 530 | 705 | 5.18e-12 | 68.9 |
| MS.gene005505.t1 | AT5G21222 | 28.652 | 178 | 120 | 5 | 127 | 299 | 530 | 705 | 5.18e-12 | 68.9 |
| MS.gene005505.t1 | AT5G21222 | 28.652 | 178 | 120 | 5 | 127 | 299 | 530 | 705 | 5.18e-12 | 68.9 |
| MS.gene005505.t1 | AT5G21222 | 28.652 | 178 | 120 | 5 | 127 | 299 | 530 | 705 | 5.18e-12 | 68.9 |
| MS.gene005505.t1 | AT1G28000 | 23.239 | 284 | 208 | 6 | 13 | 286 | 13 | 296 | 5.59e-11 | 64.7 |
Find 97 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGCTTGTTGAGCCTTTA+TGG | 0.133814 | 1.1:-64408274 | MS.gene005505:CDS |
| AATTACGGCCGTTTGATTTC+CGG | 0.229164 | 1.1:-64409352 | MS.gene005505:CDS |
| GGGCATAATAACATTGTTTA+AGG | 0.231511 | 1.1:-64408131 | MS.gene005505:CDS |
| AGGACCTTTCTTTAGGATTC+AGG | 0.243843 | 1.1:-64407984 | MS.gene005505:CDS |
| CCGTATCATTAAGCCTTCTA+AGG | 0.261570 | 1.1:+64408155 | None:intergenic |
| ATTGTTCATGCTGTATTTAT+TGG | 0.275275 | 1.1:-64407960 | MS.gene005505:CDS |
| TTTGATAAGATGGATGAATT+AGG | 0.276635 | 1.1:-64408637 | MS.gene005505:CDS |
| AAGCTGAATGGATGCTTAAA+AGG | 0.290036 | 1.1:-64408336 | MS.gene005505:CDS |
| TTTGTCTTTCACCAATTTGA+TGG | 0.306990 | 1.1:-64408602 | MS.gene005505:CDS |
| TTATGCTTTCTACCCTTAGA+AGG | 0.334013 | 1.1:-64408168 | MS.gene005505:CDS |
| ATGAATACCAAGAGATGATT+TGG | 0.340150 | 1.1:+64407727 | None:intergenic |
| CATATACAAAACCATCAAAT+TGG | 0.348712 | 1.1:+64408591 | None:intergenic |
| GGTGTAGAGGACCTTTCTTT+AGG | 0.358064 | 1.1:-64407991 | MS.gene005505:CDS |
| CTGAATTTACATACACTGTT+TGG | 0.374347 | 1.1:-64408501 | MS.gene005505:CDS |
| GAAGGCAAAGCCTTAGAAAA+AGG | 0.386252 | 1.1:-64409187 | MS.gene005505:CDS |
| ACATACACTGTTTGGATGAA+TGG | 0.388873 | 1.1:-64408493 | MS.gene005505:CDS |
| TACAACAGCAGCTGAGCTTC+CGG | 0.389647 | 1.1:-64409296 | MS.gene005505:CDS |
| CGGTACTGGTAATGTTAAAC+AGG | 0.402312 | 1.1:-64408251 | MS.gene005505:CDS |
| GAAGCCGCACTTTCAGAAAT+CGG | 0.409937 | 1.1:-64407902 | MS.gene005505:CDS |
| AAGATGAAGACAAAATTGAT+TGG | 0.418194 | 1.1:-64408411 | MS.gene005505:CDS |
| ATGAGTTAAGCAAGATTCTC+AGG | 0.422935 | 1.1:-64407796 | MS.gene005505:CDS |
| ATTTATGACTTTCGAAAGAA+TGG | 0.423614 | 1.1:-64409148 | MS.gene005505:CDS |
| CAGCTTTGAATGACATTGGT+GGG | 0.429431 | 1.1:-64408465 | MS.gene005505:CDS |
| TTGAGCCTTTATGGCGGTAC+TGG | 0.429760 | 1.1:-64408265 | MS.gene005505:CDS |
| CATTACCAGTACCGCCATAA+AGG | 0.430143 | 1.1:+64408260 | None:intergenic |
| AGTAATGCAAGTTTCAATAC+AGG | 0.442716 | 1.1:+64407754 | None:intergenic |
| GGCTCATAGCACCATTCAAT+TGG | 0.443758 | 1.1:+64407930 | None:intergenic |
| TCAGTTGGTTAATGTTATGA+AGG | 0.445036 | 1.1:-64408542 | MS.gene005505:CDS |
| TGGGGTTGAAAGGGTTTATG+AGG | 0.447556 | 1.1:-64408446 | MS.gene005505:CDS |
| TGGTAACTTTCGCGTTGCAC+TGG | 0.457822 | 1.1:+64408295 | None:intergenic |
| CATAATAAAATAGCTATGAT+TGG | 0.458064 | 1.1:+64408186 | None:intergenic |
| TGGTATTCATCAAGTATTGA+AGG | 0.458072 | 1.1:-64407714 | MS.gene005505:CDS |
| ATGACATTGGTGGGGTTGAA+AGG | 0.462059 | 1.1:-64408456 | MS.gene005505:CDS |
| GCTAGTCTGTCGTAAAGGTT+TGG | 0.464595 | 1.1:+64409265 | None:intergenic |
| TAAAGGTTTGGCTTCTTCGC+CGG | 0.464755 | 1.1:+64409277 | None:intergenic |
| TGACATTGGTGGGGTTGAAA+GGG | 0.469956 | 1.1:-64408455 | MS.gene005505:CDS |
| AATAACATTGTTTAAGGAGT+GGG | 0.471012 | 1.1:-64408125 | MS.gene005505:CDS |
| TTCAATCACTCCTTTCACTT+TGG | 0.474139 | 1.1:+64408771 | None:intergenic |
| TTACGACAGACTAGCGGTGC+TGG | 0.481394 | 1.1:-64409257 | MS.gene005505:CDS |
| GTTTGATTTCCGGCGGAGGA+AGG | 0.482051 | 1.1:-64409342 | MS.gene005505:CDS |
| AGAGACTCTGAAATGAATTA+CGG | 0.484891 | 1.1:-64409367 | None:intergenic |
| GGCCGTTTGATTTCCGGCGG+AGG | 0.498441 | 1.1:-64409346 | MS.gene005505:CDS |
| TCGGAGAAGCCTTCCTCCGC+CGG | 0.500205 | 1.1:+64409333 | None:intergenic |
| TTAAACAGGTTTATAGAGTG+TGG | 0.503758 | 1.1:-64408237 | MS.gene005505:CDS |
| TTGGAGAAATGCCAATTGAA+TGG | 0.505083 | 1.1:-64407941 | MS.gene005505:CDS |
| TTCCTCCGCCGGAAATCAAA+CGG | 0.507328 | 1.1:+64409344 | None:intergenic |
| ACTGCATCCAAATCATCTCT+TGG | 0.511101 | 1.1:-64407734 | MS.gene005505:CDS |
| ATCAATTTGAGAAAGCTGAA+TGG | 0.520560 | 1.1:-64408348 | MS.gene005505:CDS |
| CGTCTGCGACACAGTTTCTC+CGG | 0.521322 | 1.1:+64409228 | None:intergenic |
| CCTTAGAAGGCTTAATGATA+CGG | 0.522341 | 1.1:-64408155 | MS.gene005505:CDS |
| AATTATGATACAAGGTTGGC+TGG | 0.523312 | 1.1:-64408088 | MS.gene005505:CDS |
| AATTCCTGAATCCTAAAGAA+AGG | 0.537404 | 1.1:+64407980 | None:intergenic |
| AGCATGTTAATTATGATACA+AGG | 0.543698 | 1.1:-64408096 | MS.gene005505:CDS |
| GCACCGCTAGTCTGTCGTAA+AGG | 0.550425 | 1.1:+64409260 | None:intergenic |
| CAGTTGGTTAATGTTATGAA+GGG | 0.560663 | 1.1:-64408541 | MS.gene005505:CDS |
| CTAGCGGTGCTGGAAAAGAC+CGG | 0.562565 | 1.1:-64409247 | MS.gene005505:CDS |
| AGAAAAGCACTCACAACTTG+TGG | 0.563214 | 1.1:+64407857 | None:intergenic |
| TGTGCAGCTTTGAATGACAT+TGG | 0.566357 | 1.1:-64408469 | MS.gene005505:CDS |
| TGTTAATTATGATACAAGGT+TGG | 0.569181 | 1.1:-64408092 | MS.gene005505:CDS |
| GCAGCTTTGAATGACATTGG+TGG | 0.569276 | 1.1:-64408466 | MS.gene005505:CDS |
| AGCTTTGAATGACATTGGTG+GGG | 0.572390 | 1.1:-64408464 | MS.gene005505:CDS |
| CTTCTAAACTGTTACTGCAA+GGG | 0.573008 | 1.1:-64408688 | MS.gene005505:CDS |
| CAGATTCCATCTCGCATTCG+AGG | 0.574452 | 1.1:-64409125 | MS.gene005505:intron |
| CTGAAAGTGCGGCTTCTAAG+TGG | 0.574849 | 1.1:+64407909 | None:intergenic |
| GCACTCACAACTTGTGGTGA+AGG | 0.577944 | 1.1:+64407863 | None:intergenic |
| TAATAACATTGTTTAAGGAG+TGG | 0.580243 | 1.1:-64408126 | MS.gene005505:CDS |
| TATCTTGTGTCCAAAGTGAA+AGG | 0.580372 | 1.1:-64408781 | MS.gene005505:CDS |
| TACGCTCAAGAAGGTCTCAC+CGG | 0.582181 | 1.1:-64408212 | MS.gene005505:CDS |
| TCTTCTAAACTGTTACTGCA+AGG | 0.585829 | 1.1:-64408689 | MS.gene005505:CDS |
| AATGGTTGCAGATAATGGAA+TGG | 0.590967 | 1.1:-64408846 | MS.gene005505:intron |
| AAGGCTCTTAAGCGGTGTAG+AGG | 0.591462 | 1.1:-64408004 | MS.gene005505:CDS |
| AGCTATGTCAATCTTTGAGA+AGG | 0.596105 | 1.1:-64408023 | MS.gene005505:CDS |
| CGTATCATTAAGCCTTCTAA+GGG | 0.604610 | 1.1:+64408156 | None:intergenic |
| TTGTAGCCGTGCAGAGTCGT+CGG | 0.608294 | 1.1:+64409314 | None:intergenic |
| TTCATAACATTAACCAACTG+AGG | 0.615039 | 1.1:+64408544 | None:intergenic |
| GTGATACCTCGAATGCGAGA+TGG | 0.615080 | 1.1:+64409119 | None:intergenic |
| AAGGTTGGCTGGTGTTGCAG+TGG | 0.615366 | 1.1:-64408077 | MS.gene005505:CDS |
| TTGAATCAGTATATAACCGA+AGG | 0.616050 | 1.1:-64409205 | MS.gene005505:CDS |
| TACGGCCGTTTGATTTCCGG+CGG | 0.616646 | 1.1:-64409349 | MS.gene005505:CDS |
| GCTAAGAACATGTACACATA+CGG | 0.618377 | 1.1:-64408715 | MS.gene005505:CDS |
| CGCTTGTTGAGCCTTTATGG+CGG | 0.618586 | 1.1:-64408271 | MS.gene005505:CDS |
| AGAAGGCTTAATGATACGGA+GGG | 0.620270 | 1.1:-64408151 | MS.gene005505:CDS |
| AAATAGCTATGATTGGTCAC+CGG | 0.622313 | 1.1:+64408193 | None:intergenic |
| TGCTTACTTGAGTCAAAACA+TGG | 0.625673 | 1.1:-64408053 | MS.gene005505:CDS |
| AGTGTGGAGTACGCTCAAGA+AGG | 0.625857 | 1.1:-64408221 | MS.gene005505:CDS |
| CATAAAGGCTCAACAAGCGA+TGG | 0.633055 | 1.1:+64408275 | None:intergenic |
| AGTTGGTTAATGTTATGAAG+GGG | 0.635275 | 1.1:-64408540 | MS.gene005505:CDS |
| CTCATGTGCATGGTTAACAT+CGG | 0.641804 | 1.1:+64407684 | None:intergenic |
| TCACAACTTGTGGTGAAGGA+CGG | 0.645990 | 1.1:+64407867 | None:intergenic |
| CAAGGGACTAATGCTAGACA+AGG | 0.652550 | 1.1:-64408671 | MS.gene005505:CDS |
| TAGAAGGCTTAATGATACGG+AGG | 0.655243 | 1.1:-64408152 | MS.gene005505:CDS |
| TCTTTGAGAAGGCTCTTAAG+CGG | 0.664916 | 1.1:-64408012 | MS.gene005505:CDS |
| ATCGCCGATTTCTGAAAGTG+CGG | 0.668954 | 1.1:+64407898 | None:intergenic |
| GCTTCTCCGACGACTCTGCA+CGG | 0.683165 | 1.1:-64409320 | MS.gene005505:CDS |
| GTGTACATGTTCTTAGCACG+AGG | 0.696131 | 1.1:+64408721 | None:intergenic |
| TACATGTTCTTAGCACGAGG+AGG | 0.697097 | 1.1:+64408724 | None:intergenic |
| AAACCTTTACGACAGACTAG+CGG | 0.739838 | 1.1:-64409263 | MS.gene005505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAAAATAGCTATGAT+TGG | + | chr1.1:64408869-64408888 | None:intergenic | 20.0% |
| !!! | AATTTGATGGTTTTGTATAT+GGG | - | chr1.1:64408463-64408482 | MS.gene005505:CDS | 20.0% |
| !!! | TGTTACAATAATGTTTTGAA+TGG | - | chr1.1:64408188-64408207 | MS.gene005505:CDS | 20.0% |
| ! | AAGATGAAGACAAAATTGAT+TGG | - | chr1.1:64408641-64408660 | MS.gene005505:CDS | 25.0% |
| ! | AATAACATTGTTTAAGGAGT+GGG | - | chr1.1:64408927-64408946 | MS.gene005505:intron | 25.0% |
| ! | AGCATGTTAATTATGATACA+AGG | - | chr1.1:64408956-64408975 | MS.gene005505:intron | 25.0% |
| ! | ATTGTTCATGCTGTATTTAT+TGG | - | chr1.1:64409092-64409111 | MS.gene005505:intron | 25.0% |
| ! | ATTTATGACTTTCGAAAGAA+TGG | - | chr1.1:64407904-64407923 | MS.gene005505:CDS | 25.0% |
| ! | CATATACAAAACCATCAAAT+TGG | + | chr1.1:64408464-64408483 | None:intergenic | 25.0% |
| ! | TAATAACATTGTTTAAGGAG+TGG | - | chr1.1:64408926-64408945 | MS.gene005505:intron | 25.0% |
| ! | TGTTAATTATGATACAAGGT+TGG | - | chr1.1:64408960-64408979 | MS.gene005505:intron | 25.0% |
| ! | TTTGATAAGATGGATGAATT+AGG | - | chr1.1:64408415-64408434 | MS.gene005505:CDS | 25.0% |
| !! | ATTGTCTCTTTTTGATAAGA+TGG | - | chr1.1:64408405-64408424 | MS.gene005505:CDS | 25.0% |
| !!! | ATTTGATGGTTTTGTATATG+GGG | - | chr1.1:64408464-64408483 | MS.gene005505:CDS | 25.0% |
| !!! | CAATTTGATGGTTTTGTATA+TGG | - | chr1.1:64408462-64408481 | MS.gene005505:CDS | 25.0% |
| AATTCCTGAATCCTAAAGAA+AGG | + | chr1.1:64409075-64409094 | None:intergenic | 30.0% | |
| ACATAAAATGTGTTCGACAA+GGG | + | chr1.1:64408016-64408035 | None:intergenic | 30.0% | |
| AGTAATGCAAGTTTCAATAC+AGG | + | chr1.1:64409301-64409320 | None:intergenic | 30.0% | |
| AGTTGGTTAATGTTATGAAG+GGG | - | chr1.1:64408512-64408531 | MS.gene005505:CDS | 30.0% | |
| ATCAATTTGAGAAAGCTGAA+TGG | - | chr1.1:64408704-64408723 | MS.gene005505:CDS | 30.0% | |
| ATGAATACCAAGAGATGATT+TGG | + | chr1.1:64409328-64409347 | None:intergenic | 30.0% | |
| CAGTTGGTTAATGTTATGAA+GGG | - | chr1.1:64408511-64408530 | MS.gene005505:CDS | 30.0% | |
| CTGAATTTACATACACTGTT+TGG | - | chr1.1:64408551-64408570 | MS.gene005505:CDS | 30.0% | |
| GGGCATAATAACATTGTTTA+AGG | - | chr1.1:64408921-64408940 | MS.gene005505:intron | 30.0% | |
| TCAGTTGGTTAATGTTATGA+AGG | - | chr1.1:64408510-64408529 | MS.gene005505:CDS | 30.0% | |
| TTAAACAGGTTTATAGAGTG+TGG | - | chr1.1:64408815-64408834 | MS.gene005505:CDS | 30.0% | |
| TTCATAACATTAACCAACTG+AGG | + | chr1.1:64408511-64408530 | None:intergenic | 30.0% | |
| TTGAATCAGTATATAACCGA+AGG | - | chr1.1:64407847-64407866 | MS.gene005505:CDS | 30.0% | |
| TTTGTCTTTCACCAATTTGA+TGG | - | chr1.1:64408450-64408469 | MS.gene005505:CDS | 30.0% | |
| ! | TTTTGAATGGTTGCAGATAA+TGG | - | chr1.1:64408201-64408220 | MS.gene005505:CDS | 30.0% |
| !! | TGGTATTCATCAAGTATTGA+AGG | - | chr1.1:64409338-64409357 | MS.gene005505:CDS | 30.0% |
| !!! | AAATTATTTTTGCCTTGTCC+AGG | + | chr1.1:64408111-64408130 | None:intergenic | 30.0% |
| !!! | AATTATTTTTGCCTTGTCCA+GGG | + | chr1.1:64408110-64408129 | None:intergenic | 30.0% |
| AAGCTGAATGGATGCTTAAA+AGG | - | chr1.1:64408716-64408735 | MS.gene005505:CDS | 35.0% | |
| AATTATGATACAAGGTTGGC+TGG | - | chr1.1:64408964-64408983 | MS.gene005505:intron | 35.0% | |
| ACATACACTGTTTGGATGAA+TGG | - | chr1.1:64408559-64408578 | MS.gene005505:CDS | 35.0% | |
| ATGAGTTAAGCAAGATTCTC+AGG | - | chr1.1:64409256-64409275 | MS.gene005505:CDS | 35.0% | |
| CCTTAGAAGGCTTAATGATA+CGG | - | chr1.1:64408897-64408916 | MS.gene005505:intron | 35.0% | |
| CGTATCATTAAGCCTTCTAA+GGG | + | chr1.1:64408899-64408918 | None:intergenic | 35.0% | |
| CTTCTAAACTGTTACTGCAA+GGG | - | chr1.1:64408364-64408383 | MS.gene005505:CDS | 35.0% | |
| GACATAAAATGTGTTCGACA+AGG | + | chr1.1:64408017-64408036 | None:intergenic | 35.0% | |
| GCTAAGAACATGTACACATA+CGG | - | chr1.1:64408337-64408356 | MS.gene005505:CDS | 35.0% | |
| TATCTTGTGTCCAAAGTGAA+AGG | - | chr1.1:64408271-64408290 | MS.gene005505:CDS | 35.0% | |
| TCTTCTAAACTGTTACTGCA+AGG | - | chr1.1:64408363-64408382 | MS.gene005505:CDS | 35.0% | |
| TGCTTACTTGAGTCAAAACA+TGG | - | chr1.1:64408999-64409018 | MS.gene005505:intron | 35.0% | |
| TTATGCTTTCTACCCTTAGA+AGG | - | chr1.1:64408884-64408903 | MS.gene005505:intron | 35.0% | |
| TTCAATCACTCCTTTCACTT+TGG | + | chr1.1:64408284-64408303 | None:intergenic | 35.0% | |
| TTGGAGAAATGCCAATTGAA+TGG | - | chr1.1:64409111-64409130 | MS.gene005505:intron | 35.0% | |
| ! | AAATAGCTATGATTGGTCAC+CGG | + | chr1.1:64408862-64408881 | None:intergenic | 35.0% |
| ! | AACCAACTGAGGAACTTTTT+GGG | + | chr1.1:64408500-64408519 | None:intergenic | 35.0% |
| ! | AGCTATGTCAATCTTTGAGA+AGG | - | chr1.1:64409029-64409048 | MS.gene005505:intron | 35.0% |
| ! | ATGTCTTCTATCAGAAGTGT+CGG | + | chr1.1:64407991-64408010 | None:intergenic | 35.0% |
| ! | CTCAAGTTCACCTTTTTCTA+AGG | + | chr1.1:64407878-64407897 | None:intergenic | 35.0% |
| ! | CTTTTACATAGATAGCAGCA+AGG | + | chr1.1:64408681-64408700 | None:intergenic | 35.0% |
| ! | TAACCAACTGAGGAACTTTT+TGG | + | chr1.1:64408501-64408520 | None:intergenic | 35.0% |
| !! | AATGGTTGCAGATAATGGAA+TGG | - | chr1.1:64408206-64408225 | MS.gene005505:CDS | 35.0% |
| !!! | TTTTTCTAAGGCTTTGCCTT+CGG | + | chr1.1:64407866-64407885 | None:intergenic | 35.0% |
| AAACCTTTACGACAGACTAG+CGG | - | chr1.1:64407789-64407808 | MS.gene005505:CDS | 40.0% | |
| ACTGCATCCAAATCATCTCT+TGG | - | chr1.1:64409318-64409337 | MS.gene005505:CDS | 40.0% | |
| AGAAGGCTTAATGATACGGA+GGG | - | chr1.1:64408901-64408920 | MS.gene005505:intron | 40.0% | |
| CCGTATCATTAAGCCTTCTA+AGG | + | chr1.1:64408900-64408919 | None:intergenic | 40.0% | |
| GAAGGCAAAGCCTTAGAAAA+AGG | - | chr1.1:64407865-64407884 | MS.gene005505:CDS | 40.0% | |
| TAGAAGGCTTAATGATACGG+AGG | - | chr1.1:64408900-64408919 | MS.gene005505:intron | 40.0% | |
| TATCATCACAATCCAATCCC+TGG | - | chr1.1:64408090-64408109 | MS.gene005505:CDS | 40.0% | |
| ! | AATTACGGCCGTTTGATTTC+CGG | - | chr1.1:64407700-64407719 | MS.gene005505:CDS | 40.0% |
| ! | ACCAACTGAGGAACTTTTTG+GGG | + | chr1.1:64408499-64408518 | None:intergenic | 40.0% |
| ! | TCTTTGAGAAGGCTCTTAAG+CGG | - | chr1.1:64409040-64409059 | MS.gene005505:intron | 40.0% |
| !! | AGAAAAGCACTCACAACTTG+TGG | + | chr1.1:64409198-64409217 | None:intergenic | 40.0% |
| !! | AGCTTTGAATGACATTGGTG+GGG | - | chr1.1:64408588-64408607 | MS.gene005505:CDS | 40.0% |
| !! | AGGACCTTTCTTTAGGATTC+AGG | - | chr1.1:64409068-64409087 | MS.gene005505:intron | 40.0% |
| !! | CAGCTTTGAATGACATTGGT+GGG | - | chr1.1:64408587-64408606 | MS.gene005505:CDS | 40.0% |
| !! | CGGTACTGGTAATGTTAAAC+AGG | - | chr1.1:64408801-64408820 | MS.gene005505:CDS | 40.0% |
| !! | TGTGCAGCTTTGAATGACAT+TGG | - | chr1.1:64408583-64408602 | MS.gene005505:CDS | 40.0% |
| !!! | ATGGTTTTGTATATGGGGCT+AGG | - | chr1.1:64408469-64408488 | MS.gene005505:CDS | 40.0% |
| ACCCCAAAAAGTTCCTCAGT+TGG | - | chr1.1:64408495-64408514 | MS.gene005505:CDS | 45.0% | |
| ATGACATTGGTGGGGTTGAA+AGG | - | chr1.1:64408596-64408615 | MS.gene005505:CDS | 45.0% | |
| CAAGGGACTAATGCTAGACA+AGG | - | chr1.1:64408381-64408400 | MS.gene005505:CDS | 45.0% | |
| CATAAAGGCTCAACAAGCGA+TGG | + | chr1.1:64408780-64408799 | None:intergenic | 45.0% | |
| CATTACCAGTACCGCCATAA+AGG | + | chr1.1:64408795-64408814 | None:intergenic | 45.0% | |
| GAAGCCGCACTTTCAGAAAT+CGG | - | chr1.1:64409150-64409169 | MS.gene005505:CDS | 45.0% | |
| GGCTCATAGCACCATTCAAT+TGG | + | chr1.1:64409125-64409144 | None:intergenic | 45.0% | |
| GGTGTAGAGGACCTTTCTTT+AGG | - | chr1.1:64409061-64409080 | MS.gene005505:intron | 45.0% | |
| GTGTACATGTTCTTAGCACG+AGG | + | chr1.1:64408334-64408353 | None:intergenic | 45.0% | |
| TACATGTTCTTAGCACGAGG+AGG | + | chr1.1:64408331-64408350 | None:intergenic | 45.0% | |
| TCACAACTTGTGGTGAAGGA+CGG | + | chr1.1:64409188-64409207 | None:intergenic | 45.0% | |
| TGACATTGGTGGGGTTGAAA+GGG | - | chr1.1:64408597-64408616 | MS.gene005505:CDS | 45.0% | |
| TGGGGTTGAAAGGGTTTATG+AGG | - | chr1.1:64408606-64408625 | MS.gene005505:CDS | 45.0% | |
| ! | CATCGCTTGTTGAGCCTTTA+TGG | - | chr1.1:64408778-64408797 | MS.gene005505:CDS | 45.0% |
| ! | GCTAGTCTGTCGTAAAGGTT+TGG | + | chr1.1:64407790-64407809 | None:intergenic | 45.0% |
| ! | TAAAGGTTTGGCTTCTTCGC+CGG | + | chr1.1:64407778-64407797 | None:intergenic | 45.0% |
| ! | TTTTTGCCTTGTCCAGGGAT+TGG | + | chr1.1:64408105-64408124 | None:intergenic | 45.0% |
| !! | ATCGCCGATTTCTGAAAGTG+CGG | + | chr1.1:64409157-64409176 | None:intergenic | 45.0% |
| !! | CTTCTATCAGAAGTGTCGGA+GGG | + | chr1.1:64407987-64408006 | None:intergenic | 45.0% |
| !! | GCAGCTTTGAATGACATTGG+TGG | - | chr1.1:64408586-64408605 | MS.gene005505:CDS | 45.0% |
| !! | TCTTCTATCAGAAGTGTCGG+AGG | + | chr1.1:64407988-64408007 | None:intergenic | 45.0% |
| AAGGCTCTTAAGCGGTGTAG+AGG | - | chr1.1:64409048-64409067 | MS.gene005505:intron | 50.0% | |
| AGTGTGGAGTACGCTCAAGA+AGG | - | chr1.1:64408831-64408850 | MS.gene005505:CDS | 50.0% | |
| CACAATCCAATCCCTGGACA+AGG | - | chr1.1:64408096-64408115 | MS.gene005505:CDS | 50.0% | |
| CAGATTCCATCTCGCATTCG+AGG | - | chr1.1:64407927-64407946 | MS.gene005505:CDS | 50.0% | |
| GCACTCACAACTTGTGGTGA+AGG | + | chr1.1:64409192-64409211 | None:intergenic | 50.0% | |
| GTGATACCTCGAATGCGAGA+TGG | + | chr1.1:64407936-64407955 | None:intergenic | 50.0% | |
| TACAACAGCAGCTGAGCTTC+CGG | - | chr1.1:64407756-64407775 | MS.gene005505:CDS | 50.0% | |
| TACGCTCAAGAAGGTCTCAC+CGG | - | chr1.1:64408840-64408859 | MS.gene005505:intron | 50.0% | |
| TGGTAACTTTCGCGTTGCAC+TGG | + | chr1.1:64408760-64408779 | None:intergenic | 50.0% | |
| TTCCTCCGCCGGAAATCAAA+CGG | + | chr1.1:64407711-64407730 | None:intergenic | 50.0% | |
| TTGAGCCTTTATGGCGGTAC+TGG | - | chr1.1:64408787-64408806 | MS.gene005505:CDS | 50.0% | |
| ! | CGCTTGTTGAGCCTTTATGG+CGG | - | chr1.1:64408781-64408800 | MS.gene005505:CDS | 50.0% |
| ! | CTGAAAGTGCGGCTTCTAAG+TGG | + | chr1.1:64409146-64409165 | None:intergenic | 50.0% |
| CGTCTGCGACACAGTTTCTC+CGG | + | chr1.1:64407827-64407846 | None:intergenic | 55.0% | |
| TTACGACAGACTAGCGGTGC+TGG | - | chr1.1:64407795-64407814 | MS.gene005505:CDS | 55.0% | |
| TTGTAGCCGTGCAGAGTCGT+CGG | + | chr1.1:64407741-64407760 | None:intergenic | 55.0% | |
| ! | CTAGCGGTGCTGGAAAAGAC+CGG | - | chr1.1:64407805-64407824 | MS.gene005505:CDS | 55.0% |
| ! | GCACCGCTAGTCTGTCGTAA+AGG | + | chr1.1:64407795-64407814 | None:intergenic | 55.0% |
| ! | GTTTGATTTCCGGCGGAGGA+AGG | - | chr1.1:64407710-64407729 | MS.gene005505:CDS | 55.0% |
| ! | TACGGCCGTTTGATTTCCGG+CGG | - | chr1.1:64407703-64407722 | MS.gene005505:CDS | 55.0% |
| !! | AAGGTTGGCTGGTGTTGCAG+TGG | - | chr1.1:64408975-64408994 | MS.gene005505:intron | 55.0% |
| GCTTCTCCGACGACTCTGCA+CGG | - | chr1.1:64407732-64407751 | MS.gene005505:CDS | 60.0% | |
| TCGGAGAAGCCTTCCTCCGC+CGG | + | chr1.1:64407722-64407741 | None:intergenic | 65.0% | |
| ! | GGCCGTTTGATTTCCGGCGG+AGG | - | chr1.1:64407706-64407725 | MS.gene005505:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 64407697 | 64409377 | 64407697 | ID=MS.gene005505 |
| chr1.1 | mRNA | 64407697 | 64409377 | 64407697 | ID=MS.gene005505.t1;Parent=MS.gene005505 |
| chr1.1 | exon | 64409126 | 64409377 | 64409126 | ID=MS.gene005505.t1.exon1;Parent=MS.gene005505.t1 |
| chr1.1 | CDS | 64409126 | 64409377 | 64409126 | ID=cds.MS.gene005505.t1;Parent=MS.gene005505.t1 |
| chr1.1 | exon | 64407697 | 64408857 | 64407697 | ID=MS.gene005505.t1.exon2;Parent=MS.gene005505.t1 |
| chr1.1 | CDS | 64407697 | 64408857 | 64407697 | ID=cds.MS.gene005505.t1;Parent=MS.gene005505.t1 |
| Gene Sequence |
| Protein sequence |
