Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005513.t1 | XP_013469164.1 | 97.6 | 821 | 17 | 1 | 1 | 818 | 1 | 821 | 0.00E+00 | 1545 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005513.t1 | Q9ZSM8 | 50.8 | 837 | 360 | 13 | 22 | 818 | 32 | 856 | 2.5e-219 | 763.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005513.t1 | A0A072VMY4 | 97.6 | 821 | 17 | 1 | 1 | 818 | 1 | 821 | 0.0e+00 | 1545.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene005513.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene005513 | MS.gene035889 | PPI |
MS.gene043961 | MS.gene005513 | PPI |
MS.gene005513 | MS.gene066336 | PPI |
MS.gene005513 | MS.gene010214 | PPI |
MS.gene005513 | MS.gene010130 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005513.t1 | MTR_1g086980 | 98.173 | 821 | 12 | 1 | 1 | 818 | 1 | 821 | 0.0 | 1675 |
MS.gene005513.t1 | MTR_1g086980 | 98.761 | 807 | 10 | 0 | 12 | 818 | 25 | 831 | 0.0 | 1664 |
MS.gene005513.t1 | MTR_1g086980 | 98.761 | 807 | 10 | 0 | 12 | 818 | 5 | 811 | 0.0 | 1663 |
MS.gene005513.t1 | MTR_1g086980 | 98.716 | 779 | 10 | 0 | 40 | 818 | 2 | 780 | 0.0 | 1607 |
MS.gene005513.t1 | MTR_1g086980 | 98.946 | 759 | 8 | 0 | 60 | 818 | 1 | 759 | 0.0 | 1568 |
MS.gene005513.t1 | MTR_1g086980 | 98.024 | 759 | 12 | 1 | 1 | 756 | 1 | 759 | 0.0 | 1540 |
MS.gene005513.t1 | MTR_1g086980 | 97.547 | 693 | 14 | 1 | 1 | 690 | 1 | 693 | 0.0 | 1397 |
MS.gene005513.t1 | MTR_1g086980 | 98.732 | 631 | 8 | 0 | 188 | 818 | 1 | 631 | 0.0 | 1304 |
MS.gene005513.t1 | MTR_1g086980 | 97.826 | 644 | 11 | 1 | 1 | 641 | 1 | 644 | 0.0 | 1299 |
MS.gene005513.t1 | MTR_1g086980 | 98.415 | 631 | 10 | 0 | 60 | 690 | 1 | 631 | 0.0 | 1291 |
MS.gene005513.t1 | MTR_5g016870 | 46.582 | 863 | 382 | 15 | 7 | 814 | 23 | 861 | 0.0 | 689 |
MS.gene005513.t1 | MTR_7g055660 | 56.533 | 398 | 157 | 7 | 425 | 816 | 345 | 732 | 9.44e-145 | 444 |
MS.gene005513.t1 | MTR_7g055660 | 42.433 | 337 | 186 | 4 | 10 | 345 | 17 | 346 | 3.98e-81 | 276 |
MS.gene005513.t1 | MTR_7g109560 | 56.595 | 417 | 162 | 7 | 410 | 815 | 353 | 761 | 8.78e-138 | 427 |
MS.gene005513.t1 | MTR_7g109560 | 48.123 | 293 | 137 | 4 | 21 | 311 | 74 | 353 | 1.22e-78 | 270 |
MS.gene005513.t1 | MTR_2g036060 | 39.516 | 124 | 73 | 1 | 664 | 785 | 1052 | 1175 | 3.19e-22 | 103 |
MS.gene005513.t1 | MTR_2g036060 | 39.516 | 124 | 73 | 1 | 664 | 785 | 1027 | 1150 | 3.52e-22 | 103 |
MS.gene005513.t1 | MTR_1g008230 | 36.800 | 125 | 77 | 2 | 667 | 789 | 612 | 736 | 8.56e-21 | 98.2 |
MS.gene005513.t1 | MTR_1g008230 | 36.800 | 125 | 77 | 2 | 667 | 789 | 890 | 1014 | 1.47e-20 | 97.8 |
MS.gene005513.t1 | MTR_8g027725 | 37.705 | 122 | 74 | 2 | 670 | 789 | 808 | 929 | 2.67e-20 | 97.1 |
MS.gene005513.t1 | MTR_8g027725 | 37.705 | 122 | 74 | 2 | 670 | 789 | 793 | 914 | 2.89e-20 | 97.1 |
MS.gene005513.t1 | MTR_3g091310 | 37.705 | 122 | 74 | 2 | 670 | 789 | 922 | 1043 | 8.26e-20 | 95.5 |
MS.gene005513.t1 | MTR_3g091310 | 37.705 | 122 | 74 | 2 | 670 | 789 | 828 | 949 | 8.48e-20 | 95.5 |
MS.gene005513.t1 | MTR_7g117355 | 37.324 | 142 | 73 | 4 | 670 | 808 | 823 | 951 | 1.75e-19 | 94.4 |
MS.gene005513.t1 | MTR_7g021365 | 40.336 | 119 | 68 | 2 | 668 | 783 | 904 | 1022 | 5.95e-19 | 92.8 |
MS.gene005513.t1 | MTR_1g098370 | 36.641 | 131 | 81 | 1 | 657 | 785 | 86 | 216 | 1.39e-18 | 90.1 |
MS.gene005513.t1 | MTR_8g064240 | 52.000 | 75 | 34 | 1 | 732 | 804 | 1 | 75 | 1.67e-18 | 81.6 |
MS.gene005513.t1 | MTR_1g098000 | 36.641 | 131 | 81 | 1 | 657 | 785 | 83 | 213 | 3.67e-18 | 89.0 |
MS.gene005513.t1 | MTR_1g012890 | 32.800 | 125 | 78 | 1 | 665 | 783 | 219 | 343 | 2.29e-16 | 82.0 |
MS.gene005513.t1 | MTR_0071s0100 | 31.405 | 121 | 81 | 1 | 665 | 783 | 206 | 326 | 2.43e-16 | 82.4 |
MS.gene005513.t1 | MTR_1g012910 | 34.783 | 115 | 69 | 1 | 675 | 783 | 532 | 646 | 1.15e-15 | 81.6 |
MS.gene005513.t1 | MTR_1g012910 | 34.783 | 115 | 69 | 1 | 675 | 783 | 369 | 483 | 1.19e-15 | 81.3 |
MS.gene005513.t1 | MTR_8g064250 | 57.143 | 63 | 24 | 2 | 756 | 815 | 7 | 69 | 5.25e-15 | 72.0 |
MS.gene005513.t1 | MTR_8g064320 | 57.143 | 63 | 24 | 2 | 756 | 815 | 9 | 71 | 8.68e-15 | 71.6 |
MS.gene005513.t1 | MTR_6g059310 | 32.847 | 137 | 87 | 3 | 658 | 789 | 101 | 237 | 3.68e-14 | 75.1 |
MS.gene005513.t1 | MTR_6g059310 | 32.847 | 137 | 87 | 3 | 658 | 789 | 101 | 237 | 4.20e-14 | 75.1 |
MS.gene005513.t1 | MTR_3g088625 | 27.692 | 195 | 103 | 4 | 593 | 785 | 1178 | 1336 | 1.04e-12 | 72.8 |
MS.gene005513.t1 | MTR_3g088625 | 27.692 | 195 | 103 | 4 | 593 | 785 | 1284 | 1442 | 1.05e-12 | 72.8 |
MS.gene005513.t1 | MTR_5g018850 | 29.655 | 145 | 85 | 2 | 658 | 785 | 1341 | 1485 | 1.98e-12 | 71.6 |
MS.gene005513.t1 | MTR_8g064310 | 55.769 | 52 | 21 | 1 | 755 | 804 | 6 | 57 | 2.54e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005513.t1 | AT4G02020 | 56.057 | 842 | 304 | 14 | 24 | 818 | 34 | 856 | 0.0 | 870 |
MS.gene005513.t1 | AT4G02020 | 54.161 | 781 | 292 | 14 | 24 | 757 | 34 | 795 | 0.0 | 765 |
MS.gene005513.t1 | AT4G02020 | 52.848 | 755 | 290 | 14 | 24 | 731 | 34 | 769 | 0.0 | 714 |
MS.gene005513.t1 | AT4G02020 | 52.848 | 755 | 290 | 14 | 24 | 731 | 34 | 769 | 0.0 | 714 |
MS.gene005513.t1 | AT2G23380 | 62.143 | 420 | 141 | 10 | 405 | 814 | 262 | 673 | 1.21e-165 | 496 |
MS.gene005513.t1 | AT2G23380 | 56.164 | 73 | 31 | 1 | 236 | 308 | 23 | 94 | 2.93e-18 | 90.1 |
MS.gene005513.t1 | AT2G23380 | 62.143 | 420 | 141 | 10 | 405 | 814 | 489 | 900 | 3.84e-164 | 499 |
MS.gene005513.t1 | AT2G23380 | 39.498 | 319 | 162 | 6 | 11 | 308 | 13 | 321 | 1.06e-53 | 201 |
MS.gene005513.t1 | AT1G02580 | 47.583 | 393 | 173 | 6 | 421 | 808 | 323 | 687 | 6.33e-119 | 375 |
MS.gene005513.t1 | AT1G02580 | 29.483 | 329 | 190 | 9 | 11 | 311 | 2 | 316 | 6.34e-24 | 108 |
MS.gene005513.t1 | AT1G02580 | 43.382 | 272 | 125 | 5 | 421 | 690 | 323 | 567 | 9.78e-66 | 230 |
MS.gene005513.t1 | AT1G02580 | 29.483 | 329 | 190 | 9 | 11 | 311 | 2 | 316 | 7.61e-24 | 107 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT5G42400 | 38.583 | 127 | 76 | 1 | 661 | 785 | 1241 | 1367 | 1.48e-22 | 104 |
MS.gene005513.t1 | AT2G31650 | 42.857 | 119 | 65 | 2 | 668 | 783 | 897 | 1015 | 6.11e-21 | 99.4 |
MS.gene005513.t1 | AT4G27910 | 37.302 | 126 | 77 | 2 | 667 | 790 | 883 | 1008 | 1.04e-20 | 98.6 |
MS.gene005513.t1 | AT4G30860 | 34.337 | 166 | 94 | 5 | 623 | 783 | 287 | 442 | 1.59e-20 | 96.3 |
MS.gene005513.t1 | AT5G53430 | 36.800 | 125 | 77 | 2 | 667 | 789 | 899 | 1023 | 1.51e-19 | 94.7 |
MS.gene005513.t1 | AT1G05830 | 41.176 | 119 | 67 | 2 | 668 | 783 | 918 | 1036 | 8.12e-19 | 92.4 |
MS.gene005513.t1 | AT1G05830 | 41.176 | 119 | 67 | 2 | 668 | 783 | 918 | 1036 | 8.12e-19 | 92.4 |
MS.gene005513.t1 | AT1G05830 | 41.176 | 119 | 67 | 2 | 668 | 783 | 918 | 1036 | 8.12e-19 | 92.4 |
MS.gene005513.t1 | AT1G05830 | 41.176 | 119 | 67 | 2 | 668 | 783 | 918 | 1036 | 8.12e-19 | 92.4 |
MS.gene005513.t1 | AT1G76710 | 36.154 | 130 | 81 | 1 | 658 | 785 | 78 | 207 | 2.50e-18 | 89.7 |
MS.gene005513.t1 | AT1G76710 | 36.154 | 130 | 81 | 1 | 658 | 785 | 78 | 207 | 2.82e-18 | 89.7 |
MS.gene005513.t1 | AT1G76710 | 36.154 | 130 | 81 | 1 | 658 | 785 | 78 | 207 | 2.85e-18 | 89.4 |
MS.gene005513.t1 | AT1G76710 | 36.154 | 130 | 81 | 1 | 658 | 785 | 78 | 207 | 2.85e-18 | 89.4 |
MS.gene005513.t1 | AT3G61740 | 34.677 | 124 | 78 | 2 | 670 | 790 | 840 | 963 | 1.04e-17 | 89.0 |
MS.gene005513.t1 | AT3G61740 | 34.677 | 124 | 78 | 2 | 670 | 790 | 876 | 999 | 1.25e-17 | 88.6 |
MS.gene005513.t1 | AT3G59960 | 32.558 | 129 | 82 | 3 | 666 | 789 | 108 | 236 | 1.48e-15 | 78.6 |
MS.gene005513.t1 | AT3G59960 | 32.558 | 129 | 82 | 3 | 666 | 789 | 108 | 236 | 1.48e-15 | 78.6 |
MS.gene005513.t1 | AT3G59960 | 32.558 | 129 | 82 | 3 | 666 | 789 | 108 | 236 | 1.48e-15 | 78.6 |
MS.gene005513.t1 | AT3G59960 | 32.558 | 129 | 82 | 3 | 666 | 789 | 108 | 236 | 2.47e-15 | 78.6 |
MS.gene005513.t1 | AT2G44150 | 32.558 | 129 | 82 | 3 | 666 | 789 | 113 | 241 | 1.04e-13 | 73.9 |
MS.gene005513.t1 | AT1G77300 | 31.285 | 179 | 108 | 5 | 609 | 785 | 979 | 1144 | 8.12e-13 | 73.2 |
MS.gene005513.t1 | AT1G77300 | 33.846 | 130 | 84 | 2 | 658 | 785 | 1015 | 1144 | 1.08e-12 | 72.8 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGACAAACTTACCTTAA+TGG | 0.162835 | 1.1:-64461563 | None:intergenic |
TTGGGGAAGTCTGATGTTTC+TGG | 0.176477 | 1.1:+64468448 | MS.gene005513:CDS |
AAGGATTGTTCTTGTCTTAA+TGG | 0.220999 | 1.1:+64465961 | MS.gene005513:CDS |
GTCTCATTTGTGACAGCTTT+TGG | 0.239771 | 1.1:-64464146 | None:intergenic |
CAAGGAAGTTTAAATATTCT+TGG | 0.253650 | 1.1:+64465839 | MS.gene005513:CDS |
CGTCCTTTATGTAAATTCTA+TGG | 0.261939 | 1.1:+64462027 | MS.gene005513:CDS |
CTCAGCAACCTTGGTCTAGA+TGG | 0.290673 | 1.1:-64465802 | None:intergenic |
TATGACATTGCAGCTTCTTC+TGG | 0.297074 | 1.1:-64461915 | None:intergenic |
TGGATGGGGAGCCTTCTTAA+AGG | 0.301212 | 1.1:+64468468 | MS.gene005513:CDS |
GAACGAGTTGATGGAATTCT+TGG | 0.315350 | 1.1:+64464200 | MS.gene005513:CDS |
ATAGCTAGGAACTTACTTTC+TGG | 0.330151 | 1.1:+64464771 | MS.gene005513:CDS |
TTGCCCTGGTTTCTGTCTCC+TGG | 0.332763 | 1.1:-64462063 | None:intergenic |
GATTACCTGGATTTCTAAAC+TGG | 0.334427 | 1.1:-64462821 | None:intergenic |
CGAGAGAATTCAATCCATTA+AGG | 0.335586 | 1.1:+64461549 | MS.gene005513:CDS |
TTACAAGAATCCTGAGAATC+AGG | 0.335745 | 1.1:-64464053 | None:intergenic |
TTCACCTTTGCATAGCAGTT+GGG | 0.335759 | 1.1:-64468979 | None:intergenic |
CTGCTGGTCACCCAACAATA+TGG | 0.336522 | 1.1:+64465866 | MS.gene005513:CDS |
GCCCATGGAGGCGCTTGATC+TGG | 0.337683 | 1.1:-64469521 | None:intergenic |
GAAAGAGACTTGATGGAGAT+TGG | 0.352319 | 1.1:-64461171 | None:intergenic |
TTCAATTCTTTCCTCAAGAA+TGG | 0.355699 | 1.1:+64462002 | MS.gene005513:CDS |
AGTATCAGAGAAAGTAATAT+TGG | 0.369713 | 1.1:+64462994 | MS.gene005513:CDS |
CACAGGTCTATTATTTCAGC+TGG | 0.378581 | 1.1:+64464852 | MS.gene005513:CDS |
GAATTCTTGGTTTCTCAGAT+TGG | 0.379032 | 1.1:+64464213 | MS.gene005513:CDS |
AAGCTGCAATGTCATACTTC+AGG | 0.381738 | 1.1:+64461922 | MS.gene005513:CDS |
CTCTTCTATGATTATTGCTA+TGG | 0.397112 | 1.1:+64469497 | MS.gene005513:CDS |
GGTTTCTGTCTCCTGGACCC+TGG | 0.403366 | 1.1:-64462056 | None:intergenic |
CTATAGGTAATGTTGGTTGC+TGG | 0.407659 | 1.1:+64469422 | MS.gene005513:intron |
AATTGCTGATTCGTCTCTCT+TGG | 0.412706 | 1.1:-64469561 | None:intergenic |
TGGAAATGTTTGGCAGAAAC+AGG | 0.418632 | 1.1:+64464270 | MS.gene005513:CDS |
AAAGAGACTTGATGGAGATT+GGG | 0.418884 | 1.1:-64461170 | None:intergenic |
TTGCAACCGATTTATCTTGT+TGG | 0.420771 | 1.1:-64461512 | None:intergenic |
AAGGTTCCCACATCATCATT+TGG | 0.421371 | 1.1:-64461487 | None:intergenic |
ACTCAGAAAACTTGAGTAAA+CGG | 0.424610 | 1.1:+64463982 | MS.gene005513:CDS |
TAATAGCAAGAGCTTACATT+TGG | 0.424724 | 1.1:+64464118 | MS.gene005513:CDS |
TTGAAGGGAGTGGAAATGTT+TGG | 0.426717 | 1.1:+64464260 | MS.gene005513:CDS |
CAACAGTTTCGACAGACATC+TGG | 0.427301 | 1.1:-64466558 | None:intergenic |
TATTTCAGCTGGTTCAATCA+TGG | 0.427476 | 1.1:+64464863 | MS.gene005513:CDS |
GAGTATACTGCATGCAAGAT+TGG | 0.429208 | 1.1:-64465912 | None:intergenic |
CCTTGTCCAACAAGATAAAT+CGG | 0.431600 | 1.1:+64461506 | MS.gene005513:CDS |
AATTTCTAGTATGGCATTTG+AGG | 0.432378 | 1.1:+64462744 | MS.gene005513:intron |
CTCCGTCTGTGAAGAGTCCC+TGG | 0.432892 | 1.1:-64461965 | None:intergenic |
AGAGTGAAAAGAAGACAGTT+TGG | 0.433099 | 1.1:+64463346 | MS.gene005513:intron |
GTTTCTGTCTCCTGGACCCT+GGG | 0.433547 | 1.1:-64462055 | None:intergenic |
TGGTGATCAGTGCTACCTTC+AGG | 0.436446 | 1.1:+64463398 | MS.gene005513:CDS |
ATGTTGTTAGCAAGTATGTT+GGG | 0.438742 | 1.1:+64462794 | MS.gene005513:CDS |
CAGCTGTGGGGATGGTACAC+TGG | 0.439264 | 1.1:+64468240 | MS.gene005513:intron |
TCAATGGAAGAACGAGTTGA+TGG | 0.443369 | 1.1:+64464191 | MS.gene005513:CDS |
TTCTCTAGATACATGCTCAT+AGG | 0.445332 | 1.1:-64463060 | None:intergenic |
CTTAATGGATTGAATTCTCT+CGG | 0.445675 | 1.1:-64461548 | None:intergenic |
AAGATCGCTTCCTGATTCTC+AGG | 0.449551 | 1.1:+64464043 | MS.gene005513:CDS |
CACAATGGCAACCTCTGAAC+CGG | 0.454848 | 1.1:-64466476 | None:intergenic |
ATTCACCTTTGCATAGCAGT+TGG | 0.455961 | 1.1:-64468980 | None:intergenic |
GTTCGAAGAGCTGCAAGAAC+CGG | 0.461634 | 1.1:+64466457 | MS.gene005513:CDS |
ACTGCCAGGTTCTTCTGCAC+TGG | 0.463190 | 1.1:-64463898 | None:intergenic |
TCGTCTCTCTTGGAACCCTC+AGG | 0.464748 | 1.1:-64469551 | None:intergenic |
AGAGAAAGAGTTATACTTGA+AGG | 0.465034 | 1.1:+64464244 | MS.gene005513:CDS |
ATTAATCATAACCTTTAAGA+AGG | 0.469624 | 1.1:-64468479 | None:intergenic |
TGGATTGAATTCTCTCGGCC+TGG | 0.469701 | 1.1:-64461543 | None:intergenic |
AAACCATAGAATTTACATAA+AGG | 0.469948 | 1.1:-64462030 | None:intergenic |
ACCGGCATCAATGTGTTCCT+TGG | 0.472051 | 1.1:-64469468 | None:intergenic |
AAATATTCTTGGAAGTCTGC+TGG | 0.473416 | 1.1:+64465850 | MS.gene005513:CDS |
ATGGAGATTGGGAGGAGAAT+CGG | 0.474340 | 1.1:-64461159 | None:intergenic |
ATTGGCCATGGCTCATCAAT+GGG | 0.475159 | 1.1:-64469612 | None:intergenic |
GAAGTCTGATGTTTCTGGAT+GGG | 0.479401 | 1.1:+64468453 | MS.gene005513:CDS |
GAGCCACATCGGCGTGGAGA+AGG | 0.489074 | 1.1:+64468265 | MS.gene005513:CDS |
GATTACCACCATATACATCT+TGG | 0.489282 | 1.1:+64462133 | MS.gene005513:CDS |
GTCCAGATCAAGCGCCTCCA+TGG | 0.490295 | 1.1:+64469519 | MS.gene005513:CDS |
TCGACTTCTACATTGACTCT+TGG | 0.492456 | 1.1:-64466499 | None:intergenic |
TCTGTCGAAACTGTTGGGTT+AGG | 0.492462 | 1.1:+64466565 | MS.gene005513:CDS |
GTTCTTGATGCTTATCGTAA+AGG | 0.493028 | 1.1:+64468922 | MS.gene005513:CDS |
AAGTCTGATGTTTCTGGATG+GGG | 0.494803 | 1.1:+64468454 | MS.gene005513:CDS |
GGGCACCAGTTTAGAAATCC+AGG | 0.497692 | 1.1:+64462816 | MS.gene005513:CDS |
TCACCTTTGCATAGCAGTTG+GGG | 0.500009 | 1.1:-64468978 | None:intergenic |
AGAAAGTAATATTGGTAGGT+TGG | 0.500552 | 1.1:+64463002 | MS.gene005513:CDS |
TACTAACTTACCATAAAATA+CGG | 0.501938 | 1.1:-64462478 | None:intergenic |
TTGGTCTAGATGGCATGTCT+TGG | 0.503716 | 1.1:-64465792 | None:intergenic |
AATGTTGTTAGCAAGTATGT+TGG | 0.504453 | 1.1:+64462793 | MS.gene005513:CDS |
AGATGTCTGTCGAAACTGTT+GGG | 0.506928 | 1.1:+64466560 | MS.gene005513:CDS |
AGCAGTTGGGGTTTGATGAG+TGG | 0.507871 | 1.1:-64468966 | None:intergenic |
CCATGGCTCATCAATGGGAT+TGG | 0.508976 | 1.1:-64469607 | None:intergenic |
AGAGTTATACTTGAAGGGAG+TGG | 0.511021 | 1.1:+64464250 | MS.gene005513:CDS |
GACCAGCATCCTAAAAGCTC+AGG | 0.512493 | 1.1:+64463024 | MS.gene005513:CDS |
AGCAAGAGCTTACATTTGGA+TGG | 0.514477 | 1.1:+64464122 | MS.gene005513:CDS |
TTCCTTACGGGATATATCAA+AGG | 0.515656 | 1.1:-64463254 | None:intergenic |
CCAGGCACCGACGACAGAAA+AGG | 0.520888 | 1.1:-64463116 | None:intergenic |
CCTGCTCATTCAAATCGAAA+AGG | 0.520942 | 1.1:-64468672 | None:intergenic |
TTTCTTATCCCGAAAAGACC+CGG | 0.523094 | 1.1:-64463835 | None:intergenic |
CCGATTTATCTTGTTGGACA+AGG | 0.524855 | 1.1:-64461506 | None:intergenic |
GGAAGTCTGATGTTTCTGGA+TGG | 0.525818 | 1.1:+64468452 | MS.gene005513:CDS |
TCTGCAGTTGCCTCATAGCT+AGG | 0.526983 | 1.1:+64464757 | MS.gene005513:intron |
TGTTTCTTTGCTCTACCTTG+TGG | 0.528560 | 1.1:-64469584 | None:intergenic |
GATTGTTCTTGTCTTAATGG+TGG | 0.531062 | 1.1:+64465964 | MS.gene005513:CDS |
AGCTGAAATAATAGACCTGT+GGG | 0.532398 | 1.1:-64464850 | None:intergenic |
AAGCATCAAGATTCCACGTA+TGG | 0.533307 | 1.1:+64462107 | MS.gene005513:CDS |
CCATGACAATCAATTCTTGT+CGG | 0.533836 | 1.1:-64463936 | None:intergenic |
AGTATGGCATTTGAGGAACA+TGG | 0.535445 | 1.1:+64462751 | MS.gene005513:intron |
CCATCCAGTGCAGAAGAACC+TGG | 0.536754 | 1.1:+64463894 | MS.gene005513:CDS |
AAGTATAACTCTTTCTCTAG+AGG | 0.540229 | 1.1:-64464239 | None:intergenic |
TTCTGGTTCGAAGACTTGCA+TGG | 0.543056 | 1.1:+64464788 | MS.gene005513:CDS |
CCAGGTTCTTCTGCACTGGA+TGG | 0.543278 | 1.1:-64463894 | None:intergenic |
GAGAAAGAGTTATACTTGAA+GGG | 0.544561 | 1.1:+64464245 | MS.gene005513:CDS |
TGAGGAACATGGGTTAAATG+AGG | 0.547423 | 1.1:+64462762 | MS.gene005513:CDS |
TCACGCCCAGCAGCAAAACA+TGG | 0.547646 | 1.1:-64466528 | None:intergenic |
AGTGTAGTACTCTGACTGCC+AGG | 0.547776 | 1.1:-64463912 | None:intergenic |
GAGACTTGATGGAGATTGGG+AGG | 0.548982 | 1.1:-64461167 | None:intergenic |
CCCTCAGGTTTACGAGCCCA+TGG | 0.549721 | 1.1:-64469536 | None:intergenic |
TCAGAGAAAGTAATATTGGT+AGG | 0.550783 | 1.1:+64462998 | MS.gene005513:CDS |
TACATTGACTCTTGGCACAA+TGG | 0.551079 | 1.1:-64466491 | None:intergenic |
GTTCACCCGTGTACTCTCCT+AGG | 0.552754 | 1.1:-64468588 | None:intergenic |
CAGATGTCTGTCGAAACTGT+TGG | 0.555785 | 1.1:+64466559 | MS.gene005513:CDS |
AGCTGTGGGGATGGTACACT+GGG | 0.558478 | 1.1:+64468241 | MS.gene005513:intron |
ATGACATGTCTTGATTGCCC+TGG | 0.559314 | 1.1:-64462077 | None:intergenic |
TCGGTTGCAAAAGCAAATCC+AGG | 0.559625 | 1.1:+64461525 | MS.gene005513:CDS |
ATCATAGAAGAGCTCCTCAC+CGG | 0.561900 | 1.1:-64469486 | None:intergenic |
TTCTTATCCCGAAAAGACCC+GGG | 0.566631 | 1.1:-64463834 | None:intergenic |
GGGTCCAGGAGACAGAAACC+AGG | 0.568933 | 1.1:+64462059 | MS.gene005513:CDS |
GCCAAGGAACACATTGATGC+CGG | 0.569010 | 1.1:+64469467 | MS.gene005513:CDS |
ACTGCTGCTATAGGTAATGT+TGG | 0.569757 | 1.1:+64469415 | MS.gene005513:intron |
ACGCATCAGGAATCAGAGAA+TGG | 0.572672 | 1.1:+64462319 | MS.gene005513:intron |
CCGACAAGAATTGATTGTCA+TGG | 0.573856 | 1.1:+64463936 | MS.gene005513:CDS |
TCCAGATCAAGCGCCTCCAT+GGG | 0.576453 | 1.1:+64469520 | MS.gene005513:CDS |
TAATGTCAGCAGTATCAACC+AGG | 0.580659 | 1.1:+64461947 | MS.gene005513:CDS |
AAAGTAAGTTCCTAGCTATG+AGG | 0.582475 | 1.1:-64464767 | None:intergenic |
AGAGCCGCCAAATGATGATG+TGG | 0.582841 | 1.1:+64461480 | MS.gene005513:CDS |
AGCTGCAAGAACCGGTTCAG+AGG | 0.582865 | 1.1:+64466465 | MS.gene005513:CDS |
GTTGCTGGAGATCATCGAGT+TGG | 0.583554 | 1.1:+64469437 | MS.gene005513:CDS |
CACATTGATTGACACCCACA+TGG | 0.585645 | 1.1:-64465934 | None:intergenic |
TCCATGGGCTCGTAAACCTG+AGG | 0.586085 | 1.1:+64469535 | MS.gene005513:CDS |
GGAACATGGGTTAAATGAGG+AGG | 0.587108 | 1.1:+64462765 | MS.gene005513:CDS |
TAAAGGACGGTCCATTCTTG+AGG | 0.587453 | 1.1:-64462013 | None:intergenic |
ACAATTGTAGAGGAGACAGA+TGG | 0.588503 | 1.1:+64463861 | MS.gene005513:CDS |
TGACCTTCTCCACGCCGATG+TGG | 0.594534 | 1.1:-64468268 | None:intergenic |
GCTGACGATCAATCAGTCGT+TGG | 0.596367 | 1.1:+64462341 | MS.gene005513:CDS |
CACAGAGAAGCTGATAAGCG+TGG | 0.596923 | 1.1:+64468619 | MS.gene005513:CDS |
TCTTTGTACAGCTGTGGGGA+TGG | 0.597302 | 1.1:+64468232 | MS.gene005513:intron |
TAAGAAAACTACAATTGTAG+AGG | 0.600144 | 1.1:+64463851 | MS.gene005513:CDS |
CACGCCCAGCAGCAAAACAT+GGG | 0.606423 | 1.1:-64466527 | None:intergenic |
ATATCTAGTTATATGCATGA+TGG | 0.607787 | 1.1:+64464813 | MS.gene005513:CDS |
AACCAGGGACTCTTCACAGA+CGG | 0.608975 | 1.1:+64461963 | MS.gene005513:CDS |
GTTCCCACATCATCATTTGG+CGG | 0.610279 | 1.1:-64461484 | None:intergenic |
AAAATTTGACACAGAGTGCA+CGG | 0.611174 | 1.1:+64464896 | MS.gene005513:CDS |
TTTCAAAAGATTCAACTCCC+GGG | 0.612464 | 1.1:+64463817 | MS.gene005513:CDS |
AATCAGTCGTTGGAAGAAGA+CGG | 0.613091 | 1.1:+64462351 | MS.gene005513:CDS |
CCATGGGCTCGTAAACCTGA+GGG | 0.616817 | 1.1:+64469536 | MS.gene005513:CDS |
ATATGGAAAAGAATTGCTGA+TGG | 0.619252 | 1.1:+64465883 | MS.gene005513:CDS |
GAGGCATGTCAATTCCCCAC+AGG | 0.619873 | 1.1:+64464835 | MS.gene005513:CDS |
GGGAGGAGAATCGGAAACCA+TGG | 0.620949 | 1.1:-64461150 | None:intergenic |
CAGCTGAAATAATAGACCTG+TGG | 0.621680 | 1.1:-64464851 | None:intergenic |
ACAGAGAAGCTGATAAGCGT+GGG | 0.622981 | 1.1:+64468620 | MS.gene005513:CDS |
GTATGGCATTTGAGGAACAT+GGG | 0.625870 | 1.1:+64462752 | MS.gene005513:intron |
AATATCCAAGATGTATATGG+TGG | 0.626743 | 1.1:-64462138 | None:intergenic |
AAACCCCAACTGCTATGCAA+AGG | 0.629398 | 1.1:+64468975 | MS.gene005513:CDS |
TCGAGTTGGCATATTCGCCA+AGG | 0.633128 | 1.1:+64469451 | MS.gene005513:CDS |
CATAGAATTTACATAAAGGA+CGG | 0.634365 | 1.1:-64462026 | None:intergenic |
GAGCCGCCAAATGATGATGT+GGG | 0.634443 | 1.1:+64461481 | MS.gene005513:CDS |
GAGAATCTAATGCATCACTC+AGG | 0.636717 | 1.1:-64463086 | None:intergenic |
GGTTCAATCATGGACGACAA+AGG | 0.638496 | 1.1:+64464873 | MS.gene005513:CDS |
TTATGATCAACGTGGAAGTG+AGG | 0.638890 | 1.1:+64462379 | MS.gene005513:CDS |
CAATTGTAGAGGAGACAGAT+GGG | 0.639184 | 1.1:+64463862 | MS.gene005513:CDS |
ACAGTTTGGTCTGAGCCTGT+AGG | 0.639905 | 1.1:+64463360 | MS.gene005513:CDS |
GGTGGTAATCTTTCCATACG+TGG | 0.640705 | 1.1:-64462120 | None:intergenic |
TGATTACCTAGGAGAGTACA+CGG | 0.641342 | 1.1:+64468582 | MS.gene005513:CDS |
TCTAGTTATATGCATGATGG+AGG | 0.645067 | 1.1:+64464816 | MS.gene005513:CDS |
TGTTGTTAGCAAGTATGTTG+GGG | 0.651009 | 1.1:+64462795 | MS.gene005513:CDS |
GGAACACATTGATGCCGGTG+AGG | 0.653810 | 1.1:+64469472 | MS.gene005513:CDS |
CTGGGAGAGCCACATCGGCG+TGG | 0.657062 | 1.1:+64468259 | MS.gene005513:CDS |
GCATGCAGTATACTCCATGT+GGG | 0.660903 | 1.1:+64465920 | MS.gene005513:CDS |
GTGTCAATCAATGTGTGGAA+AGG | 0.662829 | 1.1:+64465942 | MS.gene005513:CDS |
GGTCCAGGAGACAGAAACCA+GGG | 0.668116 | 1.1:+64462060 | MS.gene005513:CDS |
GACGAATCAGCAATTCCACA+AGG | 0.669739 | 1.1:+64469569 | MS.gene005513:CDS |
TGCATGCAGTATACTCCATG+TGG | 0.671233 | 1.1:+64465919 | MS.gene005513:CDS |
GTTGTTAGCAAGTATGTTGG+GGG | 0.673475 | 1.1:+64462796 | MS.gene005513:CDS |
CAGGGACTCTTCACAGACGG+AGG | 0.683082 | 1.1:+64461966 | MS.gene005513:CDS |
ACACTCTTTGTACAGCTGTG+GGG | 0.688643 | 1.1:+64468228 | MS.gene005513:intron |
ATTGATATGTAGTGACAGTG+AGG | 0.690264 | 1.1:+64462403 | MS.gene005513:CDS |
CGGATCTATTATGATCAACG+TGG | 0.691963 | 1.1:+64462371 | MS.gene005513:CDS |
TGTGGGTGTCAATCAATGTG+TGG | 0.694307 | 1.1:+64465937 | MS.gene005513:CDS |
AGGTAGCACTGATCACCACA+TGG | 0.697472 | 1.1:-64463393 | None:intergenic |
AGTCACAAATCAGTCTGACA+CGG | 0.700707 | 1.1:+64464007 | MS.gene005513:CDS |
GTACACTGGGAGAGCCACAT+CGG | 0.707893 | 1.1:+64468254 | MS.gene005513:CDS |
AAGACATGCCATCTAGACCA+AGG | 0.710361 | 1.1:+64465794 | MS.gene005513:CDS |
GAAGAATTAACAGAACCTGA+CGG | 0.712374 | 1.1:+64462425 | MS.gene005513:CDS |
AATGTCAGCAGTATCAACCA+GGG | 0.730778 | 1.1:+64461948 | MS.gene005513:CDS |
CGGCGTGGAGAAGGTCAATG+CGG | 0.745375 | 1.1:+64468274 | MS.gene005513:CDS |
TCAGGTTTACGAGCCCATGG+AGG | 0.748462 | 1.1:-64469533 | None:intergenic |
GATTACCTAGGAGAGTACAC+GGG | 0.774788 | 1.1:+64468583 | MS.gene005513:CDS |
GCTGAAATAATAGACCTGTG+GGG | 0.791200 | 1.1:-64464849 | None:intergenic |
GTAGGTGATAGAAAACCATG+TGG | 0.821461 | 1.1:+64463378 | MS.gene005513:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 64461152 | 64469619 | 64461152 | ID=MS.gene005513 |
chr1.1 | mRNA | 64461152 | 64469619 | 64461152 | ID=MS.gene005513.t1;Parent=MS.gene005513 |
chr1.1 | exon | 64461152 | 64461184 | 64461152 | ID=MS.gene005513.t1.exon1;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64461152 | 64461184 | 64461152 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64461478 | 64461570 | 64461478 | ID=MS.gene005513.t1.exon2;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64461478 | 64461570 | 64461478 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64461898 | 64462169 | 64461898 | ID=MS.gene005513.t1.exon3;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64461898 | 64462169 | 64461898 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64462328 | 64462489 | 64462328 | ID=MS.gene005513.t1.exon4;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64462328 | 64462489 | 64462328 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64462753 | 64462837 | 64462753 | ID=MS.gene005513.t1.exon5;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64462753 | 64462837 | 64462753 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64462982 | 64463137 | 64462982 | ID=MS.gene005513.t1.exon6;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64462982 | 64463137 | 64462982 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64463221 | 64463268 | 64463221 | ID=MS.gene005513.t1.exon7;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64463221 | 64463268 | 64463221 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64463348 | 64463419 | 64463348 | ID=MS.gene005513.t1.exon8;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64463348 | 64463419 | 64463348 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64463798 | 64464291 | 64463798 | ID=MS.gene005513.t1.exon9;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64463798 | 64464291 | 64463798 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64464764 | 64464917 | 64464764 | ID=MS.gene005513.t1.exon10;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64464764 | 64464917 | 64464764 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64465790 | 64466010 | 64465790 | ID=MS.gene005513.t1.exon11;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64465790 | 64466010 | 64465790 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64466455 | 64466586 | 64466455 | ID=MS.gene005513.t1.exon12;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64466455 | 64466586 | 64466455 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64468243 | 64468330 | 64468243 | ID=MS.gene005513.t1.exon13;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64468243 | 64468330 | 64468243 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64468442 | 64468489 | 64468442 | ID=MS.gene005513.t1.exon14;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64468442 | 64468489 | 64468442 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64468565 | 64468693 | 64468565 | ID=MS.gene005513.t1.exon15;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64468565 | 64468693 | 64468565 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64468919 | 64468996 | 64468919 | ID=MS.gene005513.t1.exon16;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64468919 | 64468996 | 64468919 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
chr1.1 | exon | 64469428 | 64469619 | 64469428 | ID=MS.gene005513.t1.exon17;Parent=MS.gene005513.t1 |
chr1.1 | CDS | 64469428 | 64469619 | 64469428 | ID=cds.MS.gene005513.t1;Parent=MS.gene005513.t1 |
Gene Sequence |
Protein sequence |