AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005535

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005535.t1 MTR_1g087370 100.000 136 0 0 1 136 1 136 6.31e-100 282
MS.gene005535.t1 MTR_1g087370 95.876 97 4 0 1 97 1 97 3.03e-65 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005535.t1 AT1G02680 69.091 110 30 1 15 124 19 124 1.31e-52 162

Find 29 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATAAGTGCCACACTTTC+AGG 0.177767 1.1:-64738246 None:intergenic
TCCTGAAAGTGTGGCACTTA+TGG 0.274135 1.1:+64738245 MS.gene005535:CDS
TTGTTTCAGCTCTTCATTCA+TGG 0.321730 1.1:-64739847 None:intergenic
GTACATAAAGCACAAGATAT+TGG 0.348377 1.1:+64738390 MS.gene005535:CDS
TCTGTACAACGGTTAAGTTT+TGG 0.401058 1.1:-64739816 None:intergenic
GAAAACTCCTCTTCTGCGCT+TGG 0.409109 1.1:-64737977 None:intergenic
TCAACCATTCATCCTTCTGC+TGG 0.456641 1.1:-64739930 None:intergenic
ATAGTGCAGCACATGATGTA+TGG 0.483674 1.1:+64738089 MS.gene005535:intron
TGTAGAATATATAACAGAAC+TGG 0.487631 1.1:+64738278 MS.gene005535:CDS
CAGCACATGATGTATGGCTT+CGG 0.502212 1.1:+64738095 MS.gene005535:CDS
CTGCGCTTGGATGAAGTATC+CGG 0.543383 1.1:-64737964 None:intergenic
GTACCTTGCGAATCAAATAG+AGG 0.544458 1.1:-64738446 None:intergenic
AGTGCCACACTTTCAGGAAG+TGG 0.547849 1.1:-64738240 None:intergenic
AGCAGCTTCCTCACAACCGC+CGG 0.558420 1.1:+64737945 MS.gene005535:CDS
ACAATGAGCAATTCTGCTGC+CGG 0.562228 1.1:+64737904 None:intergenic
ACTTCATCCAAGCGCAGAAG+AGG 0.574154 1.1:+64737970 MS.gene005535:CDS
ACAAGATATTGGATCACAGA+GGG 0.592434 1.1:+64738401 MS.gene005535:CDS
TGAAGTATCCGGCGGTTGTG+AGG 0.595509 1.1:-64737953 None:intergenic
GAGGTGGATGAACCAGCAGA+AGG 0.597040 1.1:+64739918 MS.gene005535:CDS
TTTCCTCTATTTGATTCGCA+AGG 0.600469 1.1:+64738443 MS.gene005535:CDS
AACATGATGAAGAGAATCTG+AGG 0.603292 1.1:+64739886 MS.gene005535:CDS
TGATGAAGAGAATCTGAGGA+AGG 0.619169 1.1:+64739890 MS.gene005535:CDS
CACAAGATATTGGATCACAG+AGG 0.626166 1.1:+64738400 MS.gene005535:CDS
ATGAAGAGCTGAAACAAGCA+AGG 0.629320 1.1:+64739853 MS.gene005535:CDS
TTAGCCACTTCCTGAAAGTG+TGG 0.629862 1.1:+64738236 MS.gene005535:intron
TGGACAACAGTTCTGTACAA+CGG 0.671566 1.1:-64739827 None:intergenic
AAGATATTGGATCACAGAGG+GGG 0.677224 1.1:+64738403 MS.gene005535:CDS
CGCTTGGATGAAGTATCCGG+CGG 0.690618 1.1:-64737961 None:intergenic
CAAGATATTGGATCACAGAG+GGG 0.705641 1.1:+64738402 MS.gene005535:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATATTTGCGTA+AGG - chr1.1:64738364-64738383 None:intergenic 15.0%
!! AATATAATAACAACATAGAT+TGG + chr1.1:64739310-64739329 MS.gene005535:intron 15.0%
!! ATGCTAAAATTTAAAAACTT+AGG - chr1.1:64738028-64738047 None:intergenic 15.0%
!! TATATAATCTTAGTATCTTA+TGG - chr1.1:64739076-64739095 None:intergenic 15.0%
!!! CAAATATTTTTTTTTTGTCA+AGG + chr1.1:64738368-64738387 MS.gene005535:intron 15.0%
!! AAAAATTCTTACATTCTCTT+TGG - chr1.1:64738002-64738021 None:intergenic 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr1.1:64739203-64739222 MS.gene005535:intron 20.0%
!! TAAAATATCAAGATTGATTG+TGG - chr1.1:64739757-64739776 None:intergenic 20.0%
!! TATTCATTAGCAATGAATAT+GGG + chr1.1:64738754-64738773 MS.gene005535:intron 20.0%
!! TTATTCATTAGCAATGAATA+TGG + chr1.1:64738753-64738772 MS.gene005535:intron 20.0%
!!! ATTTTTATACGAGTCTTTAT+AGG + chr1.1:64738500-64738519 MS.gene005535:intron 20.0%
! AACTTATCTACTCCTATTAA+AGG + chr1.1:64739686-64739705 MS.gene005535:intron 25.0%
! ACTTATCTACTCCTATTAAA+GGG + chr1.1:64739687-64739706 MS.gene005535:intron 25.0%
! ATCTTAAATTTGATTGACCA+TGG + chr1.1:64738840-64738859 MS.gene005535:intron 25.0%
! ATTAGATCTCTTATCATTGA+TGG + chr1.1:64738995-64739014 MS.gene005535:intron 25.0%
! GACTCGTATAAAAATTGAAT+TGG - chr1.1:64738495-64738514 None:intergenic 25.0%
! GATAGAATGAGAATTACATT+AGG - chr1.1:64738128-64738147 None:intergenic 25.0%
! TGTAGAATATATAACAGAAC+TGG + chr1.1:64738278-64738297 MS.gene005535:CDS 25.0%
! TTAGATCTCTTATCATTGAT+GGG + chr1.1:64738996-64739015 MS.gene005535:intron 25.0%
!! AGAAATTTTGCAAACATAGT+AGG - chr1.1:64738163-64738182 None:intergenic 25.0%
!!! AATGAAGGTTATTTTACTGT+TGG + chr1.1:64739625-64739644 MS.gene005535:intron 25.0%
AAATATTTGCGTAAGGACAA+AGG - chr1.1:64738357-64738376 None:intergenic 30.0%
AACTCAAAAATTGTATTGGG+GGG - chr1.1:64739380-64739399 None:intergenic 30.0%
AAGTTATATCTCAGAATTCC+TGG - chr1.1:64739576-64739595 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr1.1:64739406-64739425 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr1.1:64739405-64739424 None:intergenic 30.0%
ATATCAAGATTGATTGTGGT+CGG - chr1.1:64739753-64739772 None:intergenic 30.0%
CTCAACAAAAATGTACAATC+AGG - chr1.1:64738918-64738937 None:intergenic 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr1.1:64739381-64739400 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - chr1.1:64739382-64739401 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - chr1.1:64739383-64739402 None:intergenic 30.0%
GTACATAAAGCACAAGATAT+TGG + chr1.1:64738390-64738409 MS.gene005535:CDS 30.0%
TAATGTATCTGTCAAATCTG+AGG + chr1.1:64738664-64738683 MS.gene005535:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG - chr1.1:64739463-64739482 None:intergenic 30.0%
TTATGCTGTACATATATCTC+TGG + chr1.1:64738891-64738910 MS.gene005535:intron 30.0%
! CAAATTTAAGATGAGGAAGT+TGG - chr1.1:64738832-64738851 None:intergenic 30.0%
! GGTCAATCAAATTTAAGATG+AGG - chr1.1:64738839-64738858 None:intergenic 30.0%
AACATGATGAAGAGAATCTG+AGG + chr1.1:64739886-64739905 MS.gene005535:CDS 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr1.1:64739460-64739479 None:intergenic 35.0%
AAGCTTCTATAAGCCAAAGT+CGG + chr1.1:64738561-64738580 MS.gene005535:intron 35.0%
ACAAGATATTGGATCACAGA+GGG + chr1.1:64738401-64738420 MS.gene005535:CDS 35.0%
ACAGCATAATTATGCATGAG+TGG - chr1.1:64738880-64738899 None:intergenic 35.0%
ACTATAAAGCCTATGGAAGA+AGG - chr1.1:64738951-64738970 None:intergenic 35.0%
AGAAACCAACGAAGAAGATT+AGG - chr1.1:64738069-64738088 None:intergenic 35.0%
ATGCACATGCACTAAAATGA+AGG + chr1.1:64739610-64739629 MS.gene005535:intron 35.0%
CCAAAGAGTTGAGTGATTTA+AGG - chr1.1:64738708-64738727 None:intergenic 35.0%
CCTTAAATCACTCAACTCTT+TGG + chr1.1:64738705-64738724 MS.gene005535:intron 35.0%
CTATAAAGCCTATGGAAGAA+GGG - chr1.1:64738950-64738969 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr1.1:64739384-64739403 None:intergenic 35.0%
GTACCATACAATTACCTTGT+TGG - chr1.1:64738732-64738751 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - chr1.1:64739464-64739483 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr1.1:64739404-64739423 None:intergenic 35.0%
TAAGCCAAAGTCGGTATTAA+TGG + chr1.1:64738570-64738589 MS.gene005535:intron 35.0%
TAGTCCTAAATAACCTGCAT+TGG + chr1.1:64738624-64738643 MS.gene005535:intron 35.0%
TATAAAGCCTATGGAAGAAG+GGG - chr1.1:64738949-64738968 None:intergenic 35.0%
TCCTAGAACTATAAAGCCTA+TGG - chr1.1:64738958-64738977 None:intergenic 35.0%
TGAACCAATGCAGGTTATTT+AGG - chr1.1:64738631-64738650 None:intergenic 35.0%
TTAAATGCTACCTCCTGAAT+CGG - chr1.1:64739713-64739732 None:intergenic 35.0%
TTGTTTCAGCTCTTCATTCA+TGG - chr1.1:64739850-64739869 None:intergenic 35.0%
! AATGCAGGTTATTTAGGACT+AGG - chr1.1:64738625-64738644 None:intergenic 35.0%
! TATCTGTCAAATCTGAGGTT+AGG + chr1.1:64738669-64738688 MS.gene005535:intron 35.0%
! TATGGTGCATTTAGCTTCAT+TGG - chr1.1:64739058-64739077 None:intergenic 35.0%
! TCCATAGGCTTTATAGTTCT+AGG + chr1.1:64738954-64738973 MS.gene005535:intron 35.0%
! TCTGTACAACGGTTAAGTTT+TGG - chr1.1:64739819-64739838 None:intergenic 35.0%
! TTTCCTCTATTTGATTCGCA+AGG + chr1.1:64738443-64738462 MS.gene005535:CDS 35.0%
!! AAACACACTTAGGCTTTGTT+TGG + chr1.1:64739144-64739163 MS.gene005535:intron 35.0%
!! AACACACTTAGGCTTTGTTT+GGG + chr1.1:64739145-64739164 MS.gene005535:intron 35.0%
!! ACCTGCATTGGTTCAATAAT+CGG + chr1.1:64738636-64738655 MS.gene005535:intron 35.0%
!! AGAACCATTAATACCGACTT+TGG - chr1.1:64738577-64738596 None:intergenic 35.0%
!! TTAAGCCTTAGGCTTTGTTT+GGG - chr1.1:64739536-64739555 None:intergenic 35.0%
!! TTTAAGCCTTAGGCTTTGTT+TGG - chr1.1:64739537-64739556 None:intergenic 35.0%
!!! TCTTTGTTTTGATGAGGTTC+CGG - chr1.1:64737926-64737945 None:intergenic 35.0%
!!! TTAGTTTTCTGGTTCCTCAA+AGG + chr1.1:64739118-64739137 MS.gene005535:intron 35.0%
AAAAAATCCCCCTCATTTGG+GGG - chr1.1:64739403-64739422 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG + chr1.1:64739528-64739547 MS.gene005535:intron 40.0%
AAGATATTGGATCACAGAGG+GGG + chr1.1:64738403-64738422 MS.gene005535:CDS 40.0%
ACCGATTATTGAACCAATGC+AGG - chr1.1:64738640-64738659 None:intergenic 40.0%
ACTGTTAGCACTCTAATAGC+TGG + chr1.1:64738778-64738797 MS.gene005535:intron 40.0%
ATAGTGCAGCACATGATGTA+TGG + chr1.1:64738089-64738108 MS.gene005535:intron 40.0%
ATGAAGAGCTGAAACAAGCA+AGG + chr1.1:64739853-64739872 MS.gene005535:CDS 40.0%
ATTATGCATGAGTGGTCCAA+AGG - chr1.1:64738872-64738891 None:intergenic 40.0%
CAAAAATTGTATTGGGGGGA+GGG - chr1.1:64739376-64739395 None:intergenic 40.0%
CAAGATATTGGATCACAGAG+GGG + chr1.1:64738402-64738421 MS.gene005535:CDS 40.0%
CACAAGATATTGGATCACAG+AGG + chr1.1:64738400-64738419 MS.gene005535:CDS 40.0%
CAGAGAACTCTTTCTCAAGT+AGG + chr1.1:64738530-64738549 MS.gene005535:intron 40.0%
GCTTAAACCTTTCCTACACT+TGG + chr1.1:64739550-64739569 MS.gene005535:intron 40.0%
GGACCAACAAGGTAATTGTA+TGG + chr1.1:64738726-64738745 MS.gene005535:intron 40.0%
GTACCTTGCGAATCAAATAG+AGG - chr1.1:64738449-64738468 None:intergenic 40.0%
GTAGGAAAGGTTTAAGCCTT+AGG - chr1.1:64739547-64739566 None:intergenic 40.0%
GTCTTCCTAATCTTCTTCGT+TGG + chr1.1:64738061-64738080 MS.gene005535:intron 40.0%
GTTGAGTGAACTTTGTCTTG+AGG + chr1.1:64739018-64739037 MS.gene005535:intron 40.0%
TAAGTGTGTTTGAGCCTTTG+AGG - chr1.1:64739135-64739154 None:intergenic 40.0%
TAATTGTTCAACGAGTGCCA+TGG + chr1.1:64738322-64738341 MS.gene005535:intron 40.0%
TCAAAAATTGTATTGGGGGG+AGG - chr1.1:64739377-64739396 None:intergenic 40.0%
TCAAAGGCTCAAACACACTT+AGG + chr1.1:64739134-64739153 MS.gene005535:intron 40.0%
TGATGAAGAGAATCTGAGGA+AGG + chr1.1:64739890-64739909 MS.gene005535:CDS 40.0%
TGGACAACAGTTCTGTACAA+CGG - chr1.1:64739830-64739849 None:intergenic 40.0%
! CTTTGGCTTATAGAAGCTTG+TGG - chr1.1:64738560-64738579 None:intergenic 40.0%
! GAATCTGAGGAAGGTTTTTG+AGG + chr1.1:64739899-64739918 MS.gene005535:CDS 40.0%
!! GCAAGGTACTCTTTTGTTAC+TGG + chr1.1:64738460-64738479 MS.gene005535:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr1.1:64739152-64739171 MS.gene005535:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr1.1:64739171-64739152 None:intergenic 40.0%
!!! AGCTGCTCTTTGTTTTGATG+AGG - chr1.1:64737932-64737951 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr1.1:64739492-64739511 None:intergenic 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr1.1:64739391-64739410 MS.gene005535:intron 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr1.1:64739390-64739409 MS.gene005535:intron 40.0%
ATAGAAGACATTGGGAGGAG+AGG - chr1.1:64739455-64739474 None:intergenic 45.0%
CAGCACATGATGTATGGCTT+CGG + chr1.1:64738095-64738114 MS.gene005535:CDS 45.0%
CAGGAAGTGGCTAATTCAAG+TGG - chr1.1:64738230-64738249 None:intergenic 45.0%
CCAGAAAACTAACCTCTGCA+AGG - chr1.1:64739110-64739129 None:intergenic 45.0%
CTCAACTCTTTGGACCAACA+AGG + chr1.1:64738715-64738734 MS.gene005535:intron 45.0%
GAAAACTAACCTCTGCAAGG+AGG - chr1.1:64739107-64739126 None:intergenic 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - chr1.1:64739483-64739502 None:intergenic 45.0%
TAAAGCTACTTGCGTACTGC+AGG + chr1.1:64739788-64739807 MS.gene005535:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr1.1:64739454-64739473 None:intergenic 45.0%
TCCATAAGTGCCACACTTTC+AGG - chr1.1:64738249-64738268 None:intergenic 45.0%
TCCTGAATCGGCCCTTTAAT+AGG - chr1.1:64739701-64739720 None:intergenic 45.0%
TTAGCCACTTCCTGAAAGTG+TGG + chr1.1:64738236-64738255 MS.gene005535:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr1.1:64739157-64739176 MS.gene005535:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr1.1:64739176-64739157 None:intergenic 45.0%
! TATTAAAGGGCCGATTCAGG+AGG + chr1.1:64739700-64739719 MS.gene005535:intron 45.0%
! TCCTATTAAAGGGCCGATTC+AGG + chr1.1:64739697-64739716 MS.gene005535:intron 45.0%
! TCCTGAAAGTGTGGCACTTA+TGG + chr1.1:64738245-64738264 MS.gene005535:CDS 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + chr1.1:64739392-64739411 MS.gene005535:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr1.1:64739156-64739175 MS.gene005535:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr1.1:64739175-64739156 None:intergenic 45.0%
!! TCTGAGGAAGGTTTTTGAGG+TGG + chr1.1:64739902-64739921 MS.gene005535:CDS 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr1.1:64739496-64739515 None:intergenic 45.0%
!!! CCTTGCAGAGGTTAGTTTTC+TGG + chr1.1:64739107-64739126 MS.gene005535:intron 45.0%
AAAGCCTATGGAAGAAGGGG+AGG - chr1.1:64738946-64738965 None:intergenic 50.0%
AACCTTTCCTACACTTGGCC+AGG + chr1.1:64739555-64739574 MS.gene005535:intron 50.0%
AACGAGTGCCATGGAGTCAT+TGG + chr1.1:64738331-64738350 MS.gene005535:intron 50.0%
AAGCCTATGGAAGAAGGGGA+GGG - chr1.1:64738945-64738964 None:intergenic 50.0%
ACTTCATCCAAGCGCAGAAG+AGG + chr1.1:64737970-64737989 MS.gene005535:CDS 50.0%
AGTGCCACACTTTCAGGAAG+TGG - chr1.1:64738243-64738262 None:intergenic 50.0%
CAGAATTCCTGGCCAAGTGT+AGG - chr1.1:64739565-64739584 None:intergenic 50.0%
GAAAACTCCTCTTCTGCGCT+TGG - chr1.1:64737980-64737999 None:intergenic 50.0%
GACAAAGGCCAATGACTCCA+TGG - chr1.1:64738342-64738361 None:intergenic 50.0%
TTCCTGGCCAAGTGTAGGAA+AGG - chr1.1:64739560-64739579 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + chr1.1:64739393-64739412 MS.gene005535:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + chr1.1:64739162-64739181 MS.gene005535:intron 50.0%
! CTGCGCTTGGATGAAGTATC+CGG - chr1.1:64737967-64737986 None:intergenic 50.0%
! TGTATTGGGGGGAGGGTTTT+GGG - chr1.1:64739369-64739388 None:intergenic 50.0%
! TTGTATTGGGGGGAGGGTTT+TGG - chr1.1:64739370-64739389 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr1.1:64739155-64739174 MS.gene005535:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr1.1:64739174-64739155 None:intergenic 50.0%
!! TTGACCATGGTGCTGTCCTT+TGG + chr1.1:64738853-64738872 MS.gene005535:intron 50.0%
ACATTGGGAGGAGAGGGCTT+TGG - chr1.1:64739448-64739467 None:intergenic 55.0%
ATGTTGCAGCCTCCTTGCAG+AGG + chr1.1:64739095-64739114 MS.gene005535:intron 55.0%
CTTCCCTCCCCTTCTTCCAT+AGG + chr1.1:64738939-64738958 MS.gene005535:intron 55.0%
GAGGGGGAAGCTATCAGTTG+AGG + chr1.1:64738419-64738438 MS.gene005535:CDS 55.0%
GAGGTGGATGAACCAGCAGA+AGG + chr1.1:64739918-64739937 MS.gene005535:CDS 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + chr1.1:64739161-64739180 MS.gene005535:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr1.1:64739180-64739161 None:intergenic 55.0%
TGGTCCAAAGGACAGCACCA+TGG - chr1.1:64738860-64738879 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr1.1:64739179-64739160 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr1.1:64739519-64739538 None:intergenic 55.0%
! CGCTTGGATGAAGTATCCGG+CGG - chr1.1:64737964-64737983 None:intergenic 55.0%
! GTATTGGGGGGAGGGTTTTG+GGG - chr1.1:64739368-64739387 None:intergenic 55.0%
! TGAAGTATCCGGCGGTTGTG+AGG - chr1.1:64737956-64737975 None:intergenic 55.0%
!! TATTGGGGGGAGGGTTTTGG+GGG - chr1.1:64739367-64739386 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr1.1:64739357-64739376 None:intergenic 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr1.1:64739356-64739375 None:intergenic 55.0%
AGCAGCTTCCTCACAACCGC+CGG + chr1.1:64737945-64737964 MS.gene005535:CDS 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + chr1.1:64739167-64739186 MS.gene005535:intron 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + chr1.1:64739166-64739185 MS.gene005535:intron 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - chr1.1:64739445-64739464 None:intergenic 60.0%
!!! ATTGGGGGGAGGGTTTTGGG+GGG - chr1.1:64739366-64739385 None:intergenic 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr1.1:64739360-64739379 None:intergenic 60.0%
GAAGGGAGGGGAGGGCTTTG+GGG + chr1.1:64739179-64739198 MS.gene005535:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr1.1:64739514-64739533 None:intergenic 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + chr1.1:64739178-64739197 MS.gene005535:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr1.1:64739515-64739534 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + chr1.1:64739165-64739184 MS.gene005535:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + chr1.1:64739171-64739190 MS.gene005535:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + chr1.1:64739170-64739189 MS.gene005535:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr1.1:64739180-64739199 MS.gene005535:intron 65.0%
GGGAAGGGAGGGGAGGGCTT+TGG + chr1.1:64739177-64739196 MS.gene005535:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr1.1:64739516-64739535 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr1.1:64739510-64739529 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr1.1:64739511-64739530 None:intergenic 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr1.1:64739504-64739523 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG + chr1.1:64739181-64739200 MS.gene005535:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG + chr1.1:64739185-64739204 MS.gene005535:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 64737907 64739944 64737907 ID=MS.gene005535
chr1.1 mRNA 64737907 64739944 64737907 ID=MS.gene005535.t1;Parent=MS.gene005535
chr1.1 exon 64737907 64738009 64737907 ID=MS.gene005535.t1.exon1;Parent=MS.gene005535.t1
chr1.1 CDS 64737907 64738009 64737907 ID=cds.MS.gene005535.t1;Parent=MS.gene005535.t1
chr1.1 exon 64738093 64738130 64738093 ID=MS.gene005535.t1.exon2;Parent=MS.gene005535.t1
chr1.1 CDS 64738093 64738130 64738093 ID=cds.MS.gene005535.t1;Parent=MS.gene005535.t1
chr1.1 exon 64738240 64738299 64738240 ID=MS.gene005535.t1.exon3;Parent=MS.gene005535.t1
chr1.1 CDS 64738240 64738299 64738240 ID=cds.MS.gene005535.t1;Parent=MS.gene005535.t1
chr1.1 exon 64738390 64738464 64738390 ID=MS.gene005535.t1.exon4;Parent=MS.gene005535.t1
chr1.1 CDS 64738390 64738464 64738390 ID=cds.MS.gene005535.t1;Parent=MS.gene005535.t1
chr1.1 exon 64739810 64739944 64739810 ID=MS.gene005535.t1.exon5;Parent=MS.gene005535.t1
chr1.1 CDS 64739810 64739944 64739810 ID=cds.MS.gene005535.t1;Parent=MS.gene005535.t1
Gene Sequence

>MS.gene005535

ATGAGCAATTCTGCTGCCGGAACCTCATCAAAACAAAGAGCAGCTTCCTCACAACCGCCGGATACTTCATCCAAGCGCAGAAGAGGAGTTTTCCAAAGAGAATGTAAGAATTTTTGTTCCTAAGTTTTTAAATTTTAGCATAGTTATTTCTATTGTCTTCCTAATCTTCTTCGTTGGTTTCTATAGTGCAGCACATGATGTATGGCTTCGGAGATGATCCTAATGTAATTCTCATTCTATCTTTTTCATTTTTCCTACTATGTTTGCAAAATTTCTATTCTCTAGATTATGATATTAATTTGAACTTTTATTATTGTTTTCCACTTGAATTAGCCACTTCCTGAAAGTGTGGCACTTATGGATGACATCGTTGTAGAATATATAACAGAACTGGTAAGTATCATTTTAATGTATTTAATTGTTCAACGAGTGCCATGGAGTCATTGGCCTTTGTCCTTACGCAAATATTTTTTTTTTGTCAAGGTACATAAAGCACAAGATATTGGATCACAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGTACTCTTTTGTTACTGGTATTAGTCTCCAATTCAATTTTTATACGAGTCTTTATAGGTCTTCTGCAGAGAACTCTTTCTCAAGTAGGATCTCCACAAGCTTCTATAAGCCAAAGTCGGTATTAATGGTTCTTAAACTTCAAACATGTAAATCAGTTCCTAGTCCTAAATAACCTGCATTGGTTCAATAATCGGTTATCTAATGTATCTGTCAAATCTGAGGTTAGGATCTATAATCTTGCCTTAAATCACTCAACTCTTTGGACCAACAAGGTAATTGTATGGTACATTATTCATTAGCAATGAATATGGGCACTGTTAGCACTCTAATAGCTGGACAAAGTTCTGTCGTTGACTATATGCTGCCAACTTCCTCATCTTAAATTTGATTGACCATGGTGCTGTCCTTTGGACCACTCATGCATAATTATGCTGTACATATATCTCTGGTCCTGATTGTACATTTTTGTTGAGACTTCCCTCCCCTTCTTCCATAGGCTTTATAGTTCTAGGACAATTTATCAGATTGACATTAGATCTCTTATCATTGATGGGTTGAGTGAACTTTGTCTTGAGGATTAACAAGTGTTACCAATGAAGCTAAATGCACCATAAGATACTAAGATTATATATGTTGCAGCCTCCTTGCAGAGGTTAGTTTTCTGGTTCCTCAAAGGCTCAAACACACTTAGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAGGGGAGGGCTTTGGGGGGTTGGAAATATATAGAAAAATGGACAAAAAATTCACATTTTTTGAAAGAACAGTTTTTTAGAGAATGATAAACTAATACTTATGATTAATATACTTTTAATTTTAAGAATATAATAACAACATAGATTGGATTTGAAAAATTCATATAAACCCTCCATAACCCCCCAAAACCCTCCCCCCAATACAATTTTTGAGTTCCCCCAAATGAGGGGGATTTTTTATTATGAGTAAAAAATTAACCTCCAAAGCCCTCTCCTCCCAATGTCTTCTATTTCTTCCACTTGCTCCTTCCTTTTTTCCAAAACCCTCCCCTCCCCTCCCCTCCAAACTCCCAAACAAAGCCTAAGGCTTAAACCTTTCCTACACTTGGCCAGGAATTCTGAGATATAACTTACATACTTATTATGATGCACATGCACTAAAATGAAGGTTATTTTACTGTTGGAAAATATTGAAGCTTGCATATATAAATTTTTGTTAAAAAACTTATCTACTCCTATTAAAGGGCCGATTCAGGAGGTAGCATTTAAAAATGACAAGACTTGCTCCGACCACAATCAATCTTGATATTTTAACTAAGACTCATAAAGCTACTTGCGTACTGCAGGATATGCCAAAACTTAACCGTTGTACAGAACTGTTGTCCATGAATGAAGAGCTGAAACAAGCAAGGAAACTTTTTGAACATGATGAAGAGAATCTGAGGAAGGTTTTTGAGGTGGATGAACCAGCAGAAGGATGA
Protein sequence

>MS.gene005535.t1

MSNSAAGTSSKQRAASSQPPDTSSKRRRGVFQRELQHMMYGFGDDPNPLPESVALMDDIVVEYITELVHKAQDIGSQRGKLSVEDFLYLIRKDMPKLNRCTELLSMNEELKQARKLFEHDEENLRKVFEVDEPAEG