Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033520.t1 | XP_003624232.1 | 95.7 | 139 | 0 | 1 | 1 | 133 | 1 | 139 | 7.40E-64 | 253.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033520.t1 | O04173 | 74.8 | 139 | 24 | 3 | 1 | 133 | 1 | 134 | 2.2e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033520.t1 | G7KSG1 | 95.7 | 139 | 0 | 1 | 1 | 133 | 1 | 139 | 5.3e-64 | 253.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07265 | MS.gene033520 | PPI |
| MS.gene20838 | MS.gene033520 | PPI |
| MS.gene033520 | MS.gene20787 | PPI |
| MS.gene033520 | MS.gene005535 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033520.t1 | MTR_7g080740 | 95.683 | 139 | 0 | 1 | 1 | 133 | 1 | 139 | 2.72e-94 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033520.t1 | AT4G31720 | 74.101 | 139 | 25 | 3 | 1 | 133 | 1 | 134 | 1.01e-62 | 188 |
| MS.gene033520.t1 | AT4G31720 | 74.101 | 139 | 25 | 3 | 1 | 133 | 1 | 134 | 1.01e-62 | 188 |
| MS.gene033520.t1 | AT4G31720 | 74.101 | 139 | 25 | 3 | 1 | 133 | 1 | 134 | 1.01e-62 | 188 |
Find 30 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTGATTGCGGCTGATTC+TGG | 0.178719 | 7.3:+26794748 | None:intergenic |
| GGCTATCAGCAAAATATTCT+TGG | 0.384824 | 7.3:+26791805 | None:intergenic |
| CAACAATTCCAAAAGACAAA+AGG | 0.421748 | 7.3:-26793230 | MS.gene033520:CDS |
| TGAGTTGGTGGAGCATTACT+TGG | 0.429009 | 7.3:-26794553 | MS.gene033520:CDS |
| AACTAAGGAAGCTAGGAAAT+CGG | 0.431723 | 7.3:+26794689 | None:intergenic |
| TAATGCTCCACCAACTCATC+TGG | 0.444698 | 7.3:+26794558 | None:intergenic |
| ACTCATTCATCTCGAGTGGC+AGG | 0.476627 | 7.3:+26791765 | None:intergenic |
| CCAATGTTTCAGGACTAGAT+TGG | 0.484365 | 7.3:-26793759 | MS.gene033520:intron |
| AACAATTCCAAAAGACAAAA+GGG | 0.488464 | 7.3:-26793229 | MS.gene033520:CDS |
| TATAATCAACTAAGGAAGCT+AGG | 0.499784 | 7.3:+26794682 | None:intergenic |
| GGTACTCACAATCTCACATC+AGG | 0.516265 | 7.3:+26794510 | None:intergenic |
| AAATTTGTTGCAGAAGTCGC+AGG | 0.516680 | 7.3:-26793719 | MS.gene033520:CDS |
| CCTTCGCTTGAACTTGATTG+CGG | 0.520298 | 7.3:+26794738 | None:intergenic |
| AGGACATTGAAAGCCACTCT+TGG | 0.525406 | 7.3:+26794530 | None:intergenic |
| TTAGATACCAGATGAGTTGG+TGG | 0.530968 | 7.3:-26794565 | MS.gene033520:intron |
| TTTGCTGATAGCCCTTCGAC+TGG | 0.533587 | 7.3:-26791795 | MS.gene033520:CDS |
| GCAGGGTCCATTCCAGTCGA+AGG | 0.541033 | 7.3:+26791783 | None:intergenic |
| AATCAAGTTCAAGCGAAGGA+AGG | 0.545925 | 7.3:-26794734 | MS.gene033520:CDS |
| ATCAAGTTCAAGCGAAGGAA+GGG | 0.562141 | 7.3:-26794733 | MS.gene033520:CDS |
| GAGCATTACTTGGCCAAGAG+TGG | 0.569842 | 7.3:-26794543 | MS.gene033520:CDS |
| TGATAGCCCTTCGACTGGAA+TGG | 0.574040 | 7.3:-26791790 | MS.gene033520:CDS |
| CAAAAGGGACAGACAACAGA+AGG | 0.590753 | 7.3:-26793214 | MS.gene033520:intron |
| CTCATTCATCTCGAGTGGCA+GGG | 0.595561 | 7.3:+26791766 | None:intergenic |
| ACTGTAGGCACTGCAAAGCA+AGG | 0.611903 | 7.3:-26793257 | MS.gene033520:intron |
| CCGCAATCAAGTTCAAGCGA+AGG | 0.622408 | 7.3:-26794738 | MS.gene033520:CDS |
| GATCTTCCATCGTCAAAACA+AGG | 0.626516 | 7.3:+26793104 | None:intergenic |
| CAGGGTCCATTCCAGTCGAA+GGG | 0.633990 | 7.3:+26791784 | None:intergenic |
| ATGTACTCATTCATCTCGAG+TGG | 0.634069 | 7.3:+26791761 | None:intergenic |
| TTCTGCAACAAATTTCTGAG+TGG | 0.649282 | 7.3:+26793727 | None:intergenic |
| TCTATCGAAAGCACTGCGTG+AGG | 0.667982 | 7.3:-26793083 | MS.gene033520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAAACAAAAAAAGA+AGG | + | chr7.3:26792877-26792896 | None:intergenic | 10.0% |
| !! | AAATGAATTCGATTAAATTT+GGG | + | chr7.3:26793082-26793101 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGAAGAAAACAA+AGG | + | chr7.3:26792543-26792562 | None:intergenic | 15.0% |
| !!! | AAAATATTTAATTTCATGTG+AGG | - | chr7.3:26792104-26792123 | MS.gene033520:intron | 15.0% |
| !!! | ATTATCAATTATTGATAACA+AGG | + | chr7.3:26793503-26793522 | None:intergenic | 15.0% |
| !!! | TTAAATATTTTCTCAAACTA+TGG | + | chr7.3:26792095-26792114 | None:intergenic | 15.0% |
| !! | ATATATAGGATTCCAAATAA+AGG | + | chr7.3:26792408-26792427 | None:intergenic | 20.0% |
| !! | CAAATGAATTCGATTAAATT+TGG | + | chr7.3:26793083-26793102 | None:intergenic | 20.0% |
| !! | CAAATTTAATCGAATTCATT+TGG | - | chr7.3:26793081-26793100 | MS.gene033520:intron | 20.0% |
| !! | CATGTATATATATTAATTCC+CGG | - | chr7.3:26793558-26793577 | MS.gene033520:intron | 20.0% |
| !! | TAATACATATCAGCATATAA+TGG | + | chr7.3:26791925-26791944 | None:intergenic | 20.0% |
| !! | TATATAGGATTCCAAATAAA+GGG | + | chr7.3:26792407-26792426 | None:intergenic | 20.0% |
| !! | TATTTAAGAAAAGTTATGCT+TGG | + | chr7.3:26794303-26794322 | None:intergenic | 20.0% |
| !! | TTTAAGAACAAAAGATGAAA+TGG | + | chr7.3:26792741-26792760 | None:intergenic | 20.0% |
| !! | TTTAAGCTGTATGAAAATAT+TGG | - | chr7.3:26792259-26792278 | MS.gene033520:intron | 20.0% |
| !!! | AACTGAGCAATATATTTTTA+GGG | + | chr7.3:26793741-26793760 | None:intergenic | 20.0% |
| !!! | AAGCATAACTTTTCTTAAAT+AGG | - | chr7.3:26794302-26794321 | MS.gene033520:intron | 20.0% |
| !!! | TATTTGGAATCCTATATATA+CGG | - | chr7.3:26792409-26792428 | MS.gene033520:intron | 20.0% |
| !!! | TTTCTTCTTTTTTTAACCTT+GGG | - | chr7.3:26792547-26792566 | MS.gene033520:intron | 20.0% |
| !!! | TTTTCTTCTTTTTTTAACCT+TGG | - | chr7.3:26792546-26792565 | MS.gene033520:intron | 20.0% |
| ! | AAAAAAGTTGTTAATGCATG+TGG | - | chr7.3:26792977-26792996 | MS.gene033520:intron | 25.0% |
| ! | AAAAGTTGTCTTGATTTAGA+AGG | - | chr7.3:26793464-26793483 | MS.gene033520:intron | 25.0% |
| ! | AACAATTCCAAAAGACAAAA+GGG | - | chr7.3:26793291-26793310 | MS.gene033520:intron | 25.0% |
| ! | AAGAAATGTTGAATCCTAAA+AGG | + | chr7.3:26792661-26792680 | None:intergenic | 25.0% |
| ! | ACATCTAGTAAATTTGTACA+TGG | - | chr7.3:26792614-26792633 | MS.gene033520:intron | 25.0% |
| ! | ACTGTGCACATATATATAAT+TGG | + | chr7.3:26792920-26792939 | None:intergenic | 25.0% |
| ! | AGAACATTTAGTTACTAGAT+TGG | + | chr7.3:26792063-26792082 | None:intergenic | 25.0% |
| ! | AGAGACTTGTATTAATAGTA+AGG | + | chr7.3:26793699-26793718 | None:intergenic | 25.0% |
| ! | AGTTACTAGATTGGTAAAAA+TGG | + | chr7.3:26792054-26792073 | None:intergenic | 25.0% |
| ! | ATATATGTGCACAGTAAATT+TGG | - | chr7.3:26792925-26792944 | MS.gene033520:intron | 25.0% |
| ! | CAAATAGATTCCGTATATAT+AGG | + | chr7.3:26792422-26792441 | None:intergenic | 25.0% |
| ! | CATCTAGTAAATTTGTACAT+GGG | - | chr7.3:26792615-26792634 | MS.gene033520:intron | 25.0% |
| ! | GTTGAGTGTACATTTATTTA+TGG | + | chr7.3:26793156-26793175 | None:intergenic | 25.0% |
| ! | TAAGACTCAATCAATAGAAA+GGG | + | chr7.3:26792853-26792872 | None:intergenic | 25.0% |
| ! | TACAGATAGTAACACAAATT+GGG | + | chr7.3:26794539-26794558 | None:intergenic | 25.0% |
| ! | TATATGTGCACAGTAAATTT+GGG | - | chr7.3:26792926-26792945 | MS.gene033520:intron | 25.0% |
| ! | TTAAGACTCAATCAATAGAA+AGG | + | chr7.3:26792854-26792873 | None:intergenic | 25.0% |
| ! | TTACAGATAGTAACACAAAT+TGG | + | chr7.3:26794540-26794559 | None:intergenic | 25.0% |
| !! | ACTATCTGTAATCTTCTTTT+GGG | - | chr7.3:26794549-26794568 | MS.gene033520:CDS | 25.0% |
| !! | CAACTGAGCAATATATTTTT+AGG | + | chr7.3:26793742-26793761 | None:intergenic | 25.0% |
| !! | TACTATCTGTAATCTTCTTT+TGG | - | chr7.3:26794548-26794567 | MS.gene033520:CDS | 25.0% |
| !!! | AGATTTCAATGATTGACTTT+TGG | - | chr7.3:26792953-26792972 | MS.gene033520:intron | 25.0% |
| !!! | AGCTAGTTTTTTTATGCTTT+TGG | - | chr7.3:26792128-26792147 | MS.gene033520:intron | 25.0% |
| !!! | CTTAAAGAACTCTAAAATGA+TGG | + | chr7.3:26792245-26792264 | None:intergenic | 25.0% |
| !!! | GCTAGTTTTTTTATGCTTTT+GGG | - | chr7.3:26792129-26792148 | MS.gene033520:intron | 25.0% |
| !!! | TCTTTTGACTGATTTTAATC+TGG | - | chr7.3:26793336-26793355 | MS.gene033520:intron | 25.0% |
| AAAGGGCAAAATGAATATAC+TGG | + | chr7.3:26792836-26792855 | None:intergenic | 30.0% | |
| AAGAAAGATGCACATAGATA+AGG | + | chr7.3:26792383-26792402 | None:intergenic | 30.0% | |
| AATCAATATGACTGAGATCA+AGG | + | chr7.3:26793230-26793249 | None:intergenic | 30.0% | |
| ACAAACTCAAATAAATCCCA+AGG | + | chr7.3:26792566-26792585 | None:intergenic | 30.0% | |
| AGATAGTAATGCATTTGCAA+AGG | + | chr7.3:26793207-26793226 | None:intergenic | 30.0% | |
| ATATGTGCACAGTAAATTTG+GGG | - | chr7.3:26792927-26792946 | MS.gene033520:intron | 30.0% | |
| ATGCGTAGCATTATAATTGA+GGG | + | chr7.3:26793541-26793560 | None:intergenic | 30.0% | |
| CAACAATTCCAAAAGACAAA+AGG | - | chr7.3:26793290-26793309 | MS.gene033520:intron | 30.0% | |
| CAACACAAAAGACTAAAAGA+TGG | + | chr7.3:26793659-26793678 | None:intergenic | 30.0% | |
| CATCTTTCTTACCCTTTATT+TGG | - | chr7.3:26792393-26792412 | MS.gene033520:intron | 30.0% | |
| CCAAGAATCAAACTTAAGTA+GGG | + | chr7.3:26792718-26792737 | None:intergenic | 30.0% | |
| TAAACAGAAGTCAAGCAAAA+TGG | + | chr7.3:26792684-26792703 | None:intergenic | 30.0% | |
| TAGATACAAGAGATTAGCAT+AGG | - | chr7.3:26792307-26792326 | MS.gene033520:intron | 30.0% | |
| TATAATCAACTAAGGAAGCT+AGG | + | chr7.3:26791841-26791860 | None:intergenic | 30.0% | |
| TATACGGAATCTATTTGATC+AGG | - | chr7.3:26792425-26792444 | MS.gene033520:intron | 30.0% | |
| TATGGACCTATACAAAAGAA+GGG | + | chr7.3:26793138-26793157 | None:intergenic | 30.0% | |
| TATGTCAATTGCTACAACTT+TGG | + | chr7.3:26793841-26793860 | None:intergenic | 30.0% | |
| TGTTCTTAAACCAATGTTTC+AGG | - | chr7.3:26792751-26792770 | MS.gene033520:intron | 30.0% | |
| TTATGGACCTATACAAAAGA+AGG | + | chr7.3:26793139-26793158 | None:intergenic | 30.0% | |
| ! | AATCGAATTCATTTGGAACT+TGG | - | chr7.3:26793088-26793107 | MS.gene033520:CDS | 30.0% |
| ! | ACATATCAGCATATAATGGA+TGG | + | chr7.3:26791921-26791940 | None:intergenic | 30.0% |
| ! | AGTAGGAGTATAATCAACTA+AGG | + | chr7.3:26791849-26791868 | None:intergenic | 30.0% |
| ! | CTATCTGTAATCTTCTTTTG+GGG | - | chr7.3:26794550-26794569 | MS.gene033520:CDS | 30.0% |
| ! | TTGTGATTGGTAGTTTGAAT+GGG | - | chr7.3:26793986-26794005 | MS.gene033520:intron | 30.0% |
| !!! | TTTTGAAGTGTCCTTGTTTA+GGG | - | chr7.3:26793923-26793942 | MS.gene033520:intron | 30.0% |
| AACTAAGGAAGCTAGGAAAT+CGG | + | chr7.3:26791834-26791853 | None:intergenic | 35.0% | |
| AAGTCATAGTTCGGTTCAAA+GGG | + | chr7.3:26792190-26792209 | None:intergenic | 35.0% | |
| ACACTTCATTATGACAGGAT+AGG | - | chr7.3:26793391-26793410 | MS.gene033520:intron | 35.0% | |
| AGGAAAATGGAATCAGAAGT+AGG | + | chr7.3:26794377-26794396 | None:intergenic | 35.0% | |
| AGTAATGCATTTGCAAAGGA+AGG | + | chr7.3:26793203-26793222 | None:intergenic | 35.0% | |
| ATAAGACCCTACTTATGCTT+TGG | - | chr7.3:26794341-26794360 | MS.gene033520:intron | 35.0% | |
| ATAGATAAGGACACGAATCA+AGG | + | chr7.3:26792370-26792389 | None:intergenic | 35.0% | |
| ATCTTCATAGAGAAGAGGAT+TGG | - | chr7.3:26793860-26793879 | MS.gene033520:intron | 35.0% | |
| ATGGACCTATACAAAAGAAG+GGG | + | chr7.3:26793137-26793156 | None:intergenic | 35.0% | |
| CATGCGTAGCATTATAATTG+AGG | + | chr7.3:26793542-26793561 | None:intergenic | 35.0% | |
| CATTCAAACTACCAATCACA+AGG | + | chr7.3:26793987-26794006 | None:intergenic | 35.0% | |
| CCCTACTTAAGTTTGATTCT+TGG | - | chr7.3:26792715-26792734 | MS.gene033520:intron | 35.0% | |
| CCTTAATGAATGTGTGTCTA+AGG | - | chr7.3:26793036-26793055 | MS.gene033520:intron | 35.0% | |
| CCTTAGACACACATTCATTA+AGG | + | chr7.3:26793039-26793058 | None:intergenic | 35.0% | |
| GACACACATTCATTAAGGAA+AGG | + | chr7.3:26793034-26793053 | None:intergenic | 35.0% | |
| GACATATCTTCATAGAGAAG+AGG | - | chr7.3:26793855-26793874 | MS.gene033520:intron | 35.0% | |
| GCCAAGAATCAAACTTAAGT+AGG | + | chr7.3:26792719-26792738 | None:intergenic | 35.0% | |
| GGCAAAATGAATATACTGGA+GGG | + | chr7.3:26792832-26792851 | None:intergenic | 35.0% | |
| GGCTATCAGCAAAATATTCT+TGG | + | chr7.3:26794718-26794737 | None:intergenic | 35.0% | |
| GTAATGCATTTGCAAAGGAA+GGG | + | chr7.3:26793202-26793221 | None:intergenic | 35.0% | |
| GTGTGGATATATCCATATGT+AGG | + | chr7.3:26793608-26793627 | None:intergenic | 35.0% | |
| TAAGAACTTGTCTAGATGTG+TGG | + | chr7.3:26793625-26793644 | None:intergenic | 35.0% | |
| TAAGACCCTACTTATGCTTT+GGG | - | chr7.3:26794342-26794361 | MS.gene033520:intron | 35.0% | |
| TAATGCATTTGCAAAGGAAG+GGG | + | chr7.3:26793201-26793220 | None:intergenic | 35.0% | |
| TAATGCTAGGGATTAAACCT+GGG | - | chr7.3:26794442-26794461 | MS.gene033520:intron | 35.0% | |
| TACTGACACTTCATTATGAC+AGG | - | chr7.3:26793386-26793405 | MS.gene033520:intron | 35.0% | |
| TCTTCATAGAGAAGAGGATT+GGG | - | chr7.3:26793861-26793880 | MS.gene033520:intron | 35.0% | |
| TGGTGAACGAAAAAGAAAAG+AGG | + | chr7.3:26792034-26792053 | None:intergenic | 35.0% | |
| TGTTGCAAGTTTAGAGAAGA+TGG | - | chr7.3:26793779-26793798 | MS.gene033520:intron | 35.0% | |
| TTAATGCTAGGGATTAAACC+TGG | - | chr7.3:26794441-26794460 | MS.gene033520:intron | 35.0% | |
| TTCTGCAACAAATTTCTGAG+TGG | + | chr7.3:26792796-26792815 | None:intergenic | 35.0% | |
| TTTATTCTGTGTGAGTGTGA+GGG | - | chr7.3:26792152-26792171 | MS.gene033520:intron | 35.0% | |
| TTTCACTTGACGTTAACTGT+AGG | - | chr7.3:26793248-26793267 | MS.gene033520:CDS | 35.0% | |
| ! | ACTAGTTTAACTGACAACCT+TGG | + | chr7.3:26792464-26792483 | None:intergenic | 35.0% |
| ! | CTTGTGATTGGTAGTTTGAA+TGG | - | chr7.3:26793985-26794004 | MS.gene033520:intron | 35.0% |
| ! | GCTCTCTTTTATGAACAGTA+TGG | - | chr7.3:26794677-26794696 | MS.gene033520:intron | 35.0% |
| ! | TCTATCCCCTTCTTTTGTAT+AGG | - | chr7.3:26793129-26793148 | MS.gene033520:intron | 35.0% |
| ! | TGAATATGGTAGGTCCTTTT+AGG | - | chr7.3:26792644-26792663 | MS.gene033520:intron | 35.0% |
| ! | TTCTGATTCCATTTTCCTTG+AGG | - | chr7.3:26794379-26794398 | MS.gene033520:intron | 35.0% |
| ! | TTTTCTTGTGTCCTTGTGAT+TGG | - | chr7.3:26793973-26793992 | MS.gene033520:intron | 35.0% |
| !! | GAACTCTAAAATGATGGTAG+AGG | + | chr7.3:26792239-26792258 | None:intergenic | 35.0% |
| !! | GTTTTAGATACCAGATGAGT+TGG | - | chr7.3:26791952-26791971 | MS.gene033520:intron | 35.0% |
| !! | TGTCATTTGTGGTGTCTTTT+GGG | + | chr7.3:26794475-26794494 | None:intergenic | 35.0% |
| !!! | GTTTTGAAGTGTCCTTGTTT+AGG | - | chr7.3:26793922-26793941 | MS.gene033520:intron | 35.0% |
| AATCAAGTTCAAGCGAAGGA+AGG | - | chr7.3:26791786-26791805 | MS.gene033520:CDS | 40.0% | |
| ACGATGCATTTGCCTACATA+TGG | - | chr7.3:26793593-26793612 | MS.gene033520:intron | 40.0% | |
| AGTTTAGAGAAGATGGTGTG+TGG | - | chr7.3:26793786-26793805 | MS.gene033520:intron | 40.0% | |
| ATCAAGTTCAAGCGAAGGAA+GGG | - | chr7.3:26791787-26791806 | MS.gene033520:CDS | 40.0% | |
| ATGTAGGCAAATGCATCGTT+GGG | + | chr7.3:26793592-26793611 | None:intergenic | 40.0% | |
| CAAGTCATAGTTCGGTTCAA+AGG | + | chr7.3:26792191-26792210 | None:intergenic | 40.0% | |
| CAATTGCTACAACTTTGGCA+AGG | + | chr7.3:26793836-26793855 | None:intergenic | 40.0% | |
| CCAATCTAGTCCTGAAACAT+TGG | + | chr7.3:26792764-26792783 | None:intergenic | 40.0% | |
| CCAATGTTTCAGGACTAGAT+TGG | - | chr7.3:26792761-26792780 | MS.gene033520:intron | 40.0% | |
| CTTCATAGAGAAGAGGATTG+GGG | - | chr7.3:26793862-26793881 | MS.gene033520:intron | 40.0% | |
| CTTTGAACCGAACTATGACT+TGG | - | chr7.3:26792189-26792208 | MS.gene033520:intron | 40.0% | |
| GAATTCCATTCTGCAAGTAG+AGG | - | chr7.3:26794262-26794281 | MS.gene033520:intron | 40.0% | |
| GATCTTCCATCGTCAAAACA+AGG | + | chr7.3:26793419-26793438 | None:intergenic | 40.0% | |
| GCTTACCCAAAGCATAAGTA+GGG | + | chr7.3:26794350-26794369 | None:intergenic | 40.0% | |
| GGGCAAAATGAATATACTGG+AGG | + | chr7.3:26792833-26792852 | None:intergenic | 40.0% | |
| GTGAAAAGTGAACTGACAGT+AGG | + | chr7.3:26791866-26791885 | None:intergenic | 40.0% | |
| GTTTATTCTGTGTGAGTGTG+AGG | - | chr7.3:26792151-26792170 | MS.gene033520:intron | 40.0% | |
| TAAAATGATGGTAGAGGCCT+CGG | + | chr7.3:26792233-26792252 | None:intergenic | 40.0% | |
| TACATGGGTGCTTGTGAATA+TGG | - | chr7.3:26792630-26792649 | MS.gene033520:intron | 40.0% | |
| TACTAGACAGTGAATGCGTA+TGG | + | chr7.3:26793368-26793387 | None:intergenic | 40.0% | |
| TATGTAGGCAAATGCATCGT+TGG | + | chr7.3:26793593-26793612 | None:intergenic | 40.0% | |
| TCCAACTCCAAGTCATAGTT+CGG | + | chr7.3:26792199-26792218 | None:intergenic | 40.0% | |
| TGCTTACCCAAAGCATAAGT+AGG | + | chr7.3:26794351-26794370 | None:intergenic | 40.0% | |
| ! | ACTTATGCTTTGGGTAAGCA+AGG | - | chr7.3:26794351-26794370 | MS.gene033520:intron | 40.0% |
| ! | TGGTAAAGCACTCTTCCATT+CGG | - | chr7.3:26794415-26794434 | MS.gene033520:intron | 40.0% |
| ! | TGTCTGTCCCTTTTGTCTTT+TGG | + | chr7.3:26793301-26793320 | None:intergenic | 40.0% |
| ! | TGTGTCTAAGGCACTTTGTA+GGG | - | chr7.3:26793048-26793067 | MS.gene033520:intron | 40.0% |
| ! | TTAGATACCAGATGAGTTGG+TGG | - | chr7.3:26791955-26791974 | MS.gene033520:intron | 40.0% |
| !! | AAATTTGTTGCAGAAGTCGC+AGG | - | chr7.3:26792801-26792820 | MS.gene033520:intron | 40.0% |
| !!! | GTGTCATTTGTGGTGTCTTT+TGG | + | chr7.3:26794476-26794495 | None:intergenic | 40.0% |
| AATGAGCCCTAAAGCAACAG+AGG | + | chr7.3:26793902-26793921 | None:intergenic | 45.0% | |
| ACCACTTGTGGTCTCTTATG+CGG | - | chr7.3:26794504-26794523 | MS.gene033520:intron | 45.0% | |
| AGGACATTGAAAGCCACTCT+TGG | + | chr7.3:26791993-26792012 | None:intergenic | 45.0% | |
| CAAAAGGGACAGACAACAGA+AGG | - | chr7.3:26793306-26793325 | MS.gene033520:intron | 45.0% | |
| CCATTCGGGGTTTAATGCTA+GGG | - | chr7.3:26794430-26794449 | MS.gene033520:intron | 45.0% | |
| CCTTCGCTTGAACTTGATTG+CGG | + | chr7.3:26791785-26791804 | None:intergenic | 45.0% | |
| GGAAAAATTCCATCCGACAC+TGG | + | chr7.3:26793013-26793032 | None:intergenic | 45.0% | |
| GGTACTCACAATCTCACATC+AGG | + | chr7.3:26792013-26792032 | None:intergenic | 45.0% | |
| GTCAGACTGAACCCTAAACA+AGG | + | chr7.3:26793937-26793956 | None:intergenic | 45.0% | |
| TAAGAGACCACAAGTGGTAG+TGG | + | chr7.3:26794502-26794521 | None:intergenic | 45.0% | |
| TAATGCTCCACCAACTCATC+TGG | + | chr7.3:26791965-26791984 | None:intergenic | 45.0% | |
| TAGAGAAGATGGTGTGTGGT+TGG | - | chr7.3:26793790-26793809 | MS.gene033520:intron | 45.0% | |
| TCCATTCGGGGTTTAATGCT+AGG | - | chr7.3:26794429-26794448 | MS.gene033520:intron | 45.0% | |
| TGGATGAAGTTGACCAGTGT+CGG | - | chr7.3:26792997-26793016 | MS.gene033520:intron | 45.0% | |
| TGGGTGCTTGTGAATATGGT+AGG | - | chr7.3:26792634-26792653 | MS.gene033520:intron | 45.0% | |
| TTCTGCCTCTACTTGCAGAA+TGG | + | chr7.3:26794270-26794289 | None:intergenic | 45.0% | |
| ! | AACTTGATTGCGGCTGATTC+TGG | + | chr7.3:26791775-26791794 | None:intergenic | 45.0% |
| ! | ACCGAACTATGACTTGGAGT+TGG | - | chr7.3:26792195-26792214 | MS.gene033520:intron | 45.0% |
| ! | GATTCCATTTTCCTTGAGGC+TGG | - | chr7.3:26794383-26794402 | MS.gene033520:intron | 45.0% |
| ! | GGTAAAGCACTCTTCCATTC+GGG | - | chr7.3:26794416-26794435 | MS.gene033520:intron | 45.0% |
| ! | GTAAAGCACTCTTCCATTCG+GGG | - | chr7.3:26794417-26794436 | MS.gene033520:intron | 45.0% |
| ! | GTGTGTCTAAGGCACTTTGT+AGG | - | chr7.3:26793047-26793066 | MS.gene033520:intron | 45.0% |
| !! | AGCATTGCCTCTGTTGCTTT+AGG | - | chr7.3:26793892-26793911 | MS.gene033520:intron | 45.0% |
| !! | GCATTGCCTCTGTTGCTTTA+GGG | - | chr7.3:26793893-26793912 | MS.gene033520:intron | 45.0% |
| !! | TGAGTTGGTGGAGCATTACT+TGG | - | chr7.3:26791967-26791986 | MS.gene033520:intron | 45.0% |
| !! | TTGTGGTGTCTTTTGGGAAG+AGG | + | chr7.3:26794469-26794488 | None:intergenic | 45.0% |
| ATTCTGTGTGAGTGTGAGGG+TGG | - | chr7.3:26792155-26792174 | MS.gene033520:intron | 50.0% | |
| CAATTGTGCTTCCAGCCTCA+AGG | + | chr7.3:26794397-26794416 | None:intergenic | 50.0% | |
| CAGGTTGCAGTGTGAAACCA+AGG | - | chr7.3:26792444-26792463 | MS.gene033520:intron | 50.0% | |
| CCACTTGTGGTCTCTTATGC+GGG | - | chr7.3:26794505-26794524 | MS.gene033520:intron | 50.0% | |
| CCCTAGCATTAAACCCCGAA+TGG | + | chr7.3:26794433-26794452 | None:intergenic | 50.0% | |
| CCGCAATCAAGTTCAAGCGA+AGG | - | chr7.3:26791782-26791801 | MS.gene033520:CDS | 50.0% | |
| GAGCATTACTTGGCCAAGAG+TGG | - | chr7.3:26791977-26791996 | MS.gene033520:intron | 50.0% | |
| GCTTCCAGCCTCAAGGAAAA+TGG | + | chr7.3:26794390-26794409 | None:intergenic | 50.0% | |
| GTCAGACTGAGCCCTAAACA+AGG | + | chr7.3:26794030-26794049 | None:intergenic | 50.0% | |
| TGATAGCCCTTCGACTGGAA+TGG | - | chr7.3:26794730-26794749 | MS.gene033520:CDS | 50.0% | |
| TGGTGTTCACAGTGGGAAGA+AGG | - | chr7.3:26793810-26793829 | MS.gene033520:intron | 50.0% | |
| TTTGCTGATAGCCCTTCGAC+TGG | - | chr7.3:26794725-26794744 | MS.gene033520:CDS | 50.0% | |
| ! | ACTGTAGGCACTGCAAAGCA+AGG | - | chr7.3:26793263-26793282 | MS.gene033520:intron | 50.0% |
| ! | CTTGAGGCTGGAAGCACAAT+TGG | - | chr7.3:26794395-26794414 | MS.gene033520:intron | 50.0% |
| ! | GTGTGGTTGGTGTTCACAGT+GGG | - | chr7.3:26793803-26793822 | MS.gene033520:intron | 50.0% |
| ! | TGAAGTTGACCAGTGTCGGA+TGG | - | chr7.3:26793001-26793020 | MS.gene033520:intron | 50.0% |
| ! | TGTGTGGTTGGTGTTCACAG+TGG | - | chr7.3:26793802-26793821 | MS.gene033520:intron | 50.0% |
| !! | GTAGTGGCTGGTGTCATTTG+TGG | + | chr7.3:26794486-26794505 | None:intergenic | 50.0% |
| !! | TCTATCGAAAGCACTGCGTG+AGG | - | chr7.3:26793437-26793456 | MS.gene033520:intron | 50.0% |
| !!! | TAGGCGCCTTGTTTTGACGA+TGG | - | chr7.3:26793410-26793429 | MS.gene033520:intron | 50.0% |
| ACACCAGCCACTACCACTTG+TGG | - | chr7.3:26794492-26794511 | MS.gene033520:intron | 55.0% | |
| CAGGGTCCATTCCAGTCGAA+GGG | + | chr7.3:26794739-26794758 | None:intergenic | 55.0% | |
| CCCGCATAAGAGACCACAAG+TGG | + | chr7.3:26794508-26794527 | None:intergenic | 55.0% | |
| TAGAGGCCTCGGACTCAGAA+CGG | + | chr7.3:26792222-26792241 | None:intergenic | 55.0% | |
| ! | CATCGTTGGGAGCACATACC+GGG | + | chr7.3:26793579-26793598 | None:intergenic | 55.0% |
| ! | GCATCGTTGGGAGCACATAC+CGG | + | chr7.3:26793580-26793599 | None:intergenic | 55.0% |
| !! | AGACCACAAGTGGTAGTGGC+TGG | + | chr7.3:26794498-26794517 | None:intergenic | 55.0% |
| !! | GTCTTTTGGGAAGAGGACCC+AGG | + | chr7.3:26794462-26794481 | None:intergenic | 55.0% |
| GCAGGGTCCATTCCAGTCGA+AGG | + | chr7.3:26794740-26794759 | None:intergenic | 60.0% | |
| ! | GTTGGACCGTTCTGAGTCCG+AGG | - | chr7.3:26792213-26792232 | MS.gene033520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 26791767 | 26794775 | 26791767 | ID=MS.gene033520 |
| chr7.3 | mRNA | 26791767 | 26794775 | 26791767 | ID=MS.gene033520.t1;Parent=MS.gene033520 |
| chr7.3 | exon | 26794692 | 26794775 | 26794692 | ID=MS.gene033520.t1.exon1;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26794692 | 26794775 | 26794692 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| chr7.3 | exon | 26794519 | 26794583 | 26794519 | ID=MS.gene033520.t1.exon2;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26794519 | 26794583 | 26794519 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| chr7.3 | exon | 26793707 | 26793769 | 26793707 | ID=MS.gene033520.t1.exon3;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26793707 | 26793769 | 26793707 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| chr7.3 | exon | 26793215 | 26793272 | 26793215 | ID=MS.gene033520.t1.exon4;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26793215 | 26793272 | 26793215 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| chr7.3 | exon | 26793084 | 26793134 | 26793084 | ID=MS.gene033520.t1.exon5;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26793084 | 26793134 | 26793084 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| chr7.3 | exon | 26791767 | 26791847 | 26791767 | ID=MS.gene033520.t1.exon6;Parent=MS.gene033520.t1 |
| chr7.3 | CDS | 26791767 | 26791847 | 26791767 | ID=cds.MS.gene033520.t1;Parent=MS.gene033520.t1 |
| Gene Sequence |
| Protein sequence |
