Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005649.t1 | XP_013469226.1 | 97.2 | 602 | 11 | 2 | 1 | 602 | 1 | 596 | 0.00E+00 | 1159.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005649.t1 | O82261 | 71.0 | 617 | 154 | 7 | 1 | 602 | 1 | 607 | 7.4e-245 | 847.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005649.t1 | A0A072VML9 | 97.2 | 602 | 11 | 2 | 1 | 602 | 1 | 596 | 0.0e+00 | 1159.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene005649 | MS.gene033222 | PPI |
MS.gene60345 | MS.gene005649 | PPI |
MS.gene005649 | MS.gene56943 | PPI |
MS.gene005649 | MS.gene43291 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005649.t1 | MTR_1g088980 | 97.176 | 602 | 11 | 2 | 1 | 602 | 1 | 596 | 0.0 | 1199 |
MS.gene005649.t1 | MTR_4g106730 | 52.381 | 462 | 215 | 2 | 108 | 564 | 127 | 588 | 1.18e-176 | 513 |
MS.gene005649.t1 | MTR_6g004110 | 47.186 | 462 | 237 | 4 | 108 | 565 | 80 | 538 | 6.37e-139 | 415 |
MS.gene005649.t1 | MTR_6g004110 | 47.575 | 433 | 220 | 4 | 137 | 565 | 2 | 431 | 8.15e-129 | 385 |
MS.gene005649.t1 | MTR_6g007030 | 29.537 | 281 | 176 | 9 | 147 | 418 | 161 | 428 | 9.80e-16 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005649.t1 | AT2G47940 | 70.968 | 620 | 149 | 8 | 1 | 602 | 1 | 607 | 0.0 | 873 |
MS.gene005649.t1 | AT2G47940 | 71.244 | 619 | 148 | 9 | 1 | 602 | 1 | 606 | 0.0 | 872 |
MS.gene005649.t1 | AT5G40200 | 52.381 | 462 | 215 | 2 | 108 | 564 | 125 | 586 | 5.44e-171 | 499 |
MS.gene005649.t1 | AT5G36950 | 42.153 | 548 | 289 | 9 | 28 | 565 | 42 | 571 | 4.42e-131 | 396 |
MS.gene005649.t1 | AT1G65640 | 41.300 | 477 | 260 | 7 | 91 | 563 | 53 | 513 | 1.10e-116 | 357 |
MS.gene005649.t1 | AT1G65630 | 40.000 | 505 | 286 | 8 | 80 | 580 | 63 | 554 | 6.88e-114 | 351 |
MS.gene005649.t1 | AT5G40560 | 39.913 | 461 | 252 | 5 | 106 | 565 | 37 | 473 | 2.70e-102 | 319 |
MS.gene005649.t1 | AT1G65640 | 43.291 | 395 | 209 | 6 | 91 | 481 | 53 | 436 | 6.55e-101 | 313 |
MS.gene005649.t1 | AT3G16540 | 34.894 | 470 | 266 | 6 | 104 | 569 | 102 | 535 | 1.22e-85 | 278 |
MS.gene005649.t1 | AT3G16550 | 34.462 | 502 | 284 | 10 | 74 | 563 | 31 | 499 | 3.38e-84 | 272 |
MS.gene005649.t1 | AT1G51150 | 42.581 | 155 | 86 | 2 | 109 | 262 | 57 | 209 | 1.87e-36 | 136 |
MS.gene005649.t1 | AT5G54745 | 36.416 | 173 | 82 | 5 | 109 | 278 | 44 | 191 | 2.52e-25 | 104 |
MS.gene005649.t1 | AT3G27925 | 27.645 | 293 | 189 | 10 | 136 | 418 | 156 | 435 | 9.06e-15 | 77.4 |
MS.gene005649.t1 | AT3G27925 | 27.645 | 293 | 189 | 10 | 136 | 418 | 156 | 435 | 9.06e-15 | 77.4 |
MS.gene005649.t1 | AT5G39830 | 27.612 | 268 | 155 | 12 | 166 | 415 | 197 | 443 | 2.98e-12 | 69.7 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
8683 | gene | 169741 | 178374 | 169741 | ID=MS.gene005649 |
8683 | mRNA | 169741 | 178374 | 169741 | ID=MS.gene005649.t1;Parent=MS.gene005649 |
8683 | exon | 178204 | 178374 | 178204 | ID=MS.gene005649.t1.exon1;Parent=MS.gene005649.t1 |
8683 | CDS | 178204 | 178374 | 178204 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 177883 | 177999 | 177883 | ID=MS.gene005649.t1.exon2;Parent=MS.gene005649.t1 |
8683 | CDS | 177883 | 177999 | 177883 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 176964 | 177014 | 176964 | ID=MS.gene005649.t1.exon3;Parent=MS.gene005649.t1 |
8683 | CDS | 176964 | 177014 | 176964 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 176394 | 176467 | 176394 | ID=MS.gene005649.t1.exon4;Parent=MS.gene005649.t1 |
8683 | CDS | 176394 | 176467 | 176394 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 176250 | 176313 | 176250 | ID=MS.gene005649.t1.exon5;Parent=MS.gene005649.t1 |
8683 | CDS | 176250 | 176313 | 176250 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 175779 | 175823 | 175779 | ID=MS.gene005649.t1.exon6;Parent=MS.gene005649.t1 |
8683 | CDS | 175779 | 175823 | 175779 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 174652 | 174759 | 174652 | ID=MS.gene005649.t1.exon7;Parent=MS.gene005649.t1 |
8683 | CDS | 174652 | 174759 | 174652 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 173784 | 173861 | 173784 | ID=MS.gene005649.t1.exon8;Parent=MS.gene005649.t1 |
8683 | CDS | 173784 | 173861 | 173784 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 173637 | 173703 | 173637 | ID=MS.gene005649.t1.exon9;Parent=MS.gene005649.t1 |
8683 | CDS | 173637 | 173703 | 173637 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 173395 | 173453 | 173395 | ID=MS.gene005649.t1.exon10;Parent=MS.gene005649.t1 |
8683 | CDS | 173395 | 173453 | 173395 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 172724 | 172823 | 172724 | ID=MS.gene005649.t1.exon11;Parent=MS.gene005649.t1 |
8683 | CDS | 172724 | 172823 | 172724 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 172180 | 172259 | 172180 | ID=MS.gene005649.t1.exon12;Parent=MS.gene005649.t1 |
8683 | CDS | 172180 | 172259 | 172180 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 171668 | 171724 | 171668 | ID=MS.gene005649.t1.exon13;Parent=MS.gene005649.t1 |
8683 | CDS | 171668 | 171724 | 171668 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 171478 | 171581 | 171478 | ID=MS.gene005649.t1.exon14;Parent=MS.gene005649.t1 |
8683 | CDS | 171478 | 171581 | 171478 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170941 | 171028 | 170941 | ID=MS.gene005649.t1.exon15;Parent=MS.gene005649.t1 |
8683 | CDS | 170941 | 171028 | 170941 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170762 | 170847 | 170762 | ID=MS.gene005649.t1.exon16;Parent=MS.gene005649.t1 |
8683 | CDS | 170762 | 170847 | 170762 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170608 | 170632 | 170608 | ID=MS.gene005649.t1.exon17;Parent=MS.gene005649.t1 |
8683 | CDS | 170608 | 170632 | 170608 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170437 | 170508 | 170437 | ID=MS.gene005649.t1.exon18;Parent=MS.gene005649.t1 |
8683 | CDS | 170437 | 170508 | 170437 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170218 | 170268 | 170218 | ID=MS.gene005649.t1.exon19;Parent=MS.gene005649.t1 |
8683 | CDS | 170218 | 170268 | 170218 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 170079 | 170139 | 170079 | ID=MS.gene005649.t1.exon20;Parent=MS.gene005649.t1 |
8683 | CDS | 170079 | 170139 | 170079 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
8683 | exon | 169741 | 169991 | 169741 | ID=MS.gene005649.t1.exon21;Parent=MS.gene005649.t1 |
8683 | CDS | 169741 | 169991 | 169741 | ID=cds.MS.gene005649.t1;Parent=MS.gene005649.t1 |
Gene Sequence |
Protein sequence |