AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006008

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006008.t1 MTR_1g095810 99.830 589 1 0 1 589 1 589 0.0 1205
MS.gene006008.t1 MTR_1g026830 94.208 587 33 1 3 589 6 591 0.0 1129
MS.gene006008.t1 MTR_2g100230 40.431 418 236 5 115 529 66 473 3.82e-100 313
MS.gene006008.t1 MTR_3g467550 38.614 404 226 5 109 498 77 472 2.22e-96 305
MS.gene006008.t1 MTR_4g105100 40.334 419 237 5 115 530 172 580 1.67e-94 302
MS.gene006008.t1 MTR_3g083690 38.889 414 227 7 134 530 134 538 1.27e-93 300
MS.gene006008.t1 MTR_7g109720 43.468 421 222 8 115 530 202 611 1.68e-93 304
MS.gene006008.t1 MTR_1g054630 39.803 407 224 7 134 526 143 542 2.56e-91 293
MS.gene006008.t1 MTR_6g005550 39.563 412 229 8 124 529 144 541 2.91e-91 296
MS.gene006008.t1 MTR_3g467550 38.250 400 202 6 109 498 77 441 2.98e-90 288
MS.gene006008.t1 MTR_4g134170 36.449 428 247 4 118 527 260 680 7.67e-90 292
MS.gene006008.t1 MTR_6g005320 36.574 432 247 5 114 527 218 640 1.31e-88 288
MS.gene006008.t1 MTR_4g114120 38.537 410 228 5 136 528 131 533 1.22e-86 283
MS.gene006008.t1 MTR_2g007000 36.726 452 263 9 115 558 474 910 2.14e-83 283
MS.gene006008.t1 MTR_2g032630 39.709 413 231 7 123 530 474 873 9.97e-83 281
MS.gene006008.t1 MTR_3g467550 36.675 379 218 5 109 473 77 447 5.98e-82 265
MS.gene006008.t1 MTR_5g027840 38.481 395 226 8 136 523 95 479 2.15e-78 257
MS.gene006008.t1 MTR_4g105100 39.368 348 199 4 115 459 172 510 1.90e-71 239
MS.gene006008.t1 MTR_5g090120 38.889 360 197 9 155 506 91 435 2.56e-64 221
MS.gene006008.t1 MTR_4g079320 33.171 410 247 6 146 541 20 416 2.89e-64 225
MS.gene006008.t1 MTR_6g033070 31.616 427 275 9 124 546 120 533 2.51e-63 218
MS.gene006008.t1 MTR_7g056830 33.777 376 225 6 137 505 2 360 6.26e-63 214
MS.gene006008.t1 MTR_6g082080 33.777 376 225 6 137 505 2 360 6.60e-63 214
MS.gene006008.t1 MTR_3g449250 37.989 358 199 9 155 504 100 442 8.92e-63 216
MS.gene006008.t1 MTR_3g449250 37.989 358 199 9 155 504 100 442 1.51e-62 216
MS.gene006008.t1 MTR_3g049990 35.342 365 216 6 145 502 152 503 5.73e-61 216
MS.gene006008.t1 MTR_7g100820 34.135 416 243 11 125 529 110 505 1.52e-59 209
MS.gene006008.t1 MTR_2g041140 34.771 371 223 6 145 509 141 498 2.57e-59 211
MS.gene006008.t1 MTR_2g066050 34.239 368 215 6 145 502 53 403 2.18e-57 201
MS.gene006008.t1 MTR_2g039960 30.848 389 250 8 145 530 41 413 9.94e-55 191
MS.gene006008.t1 MTR_4g125970 30.848 389 250 8 145 530 41 413 1.49e-54 191
MS.gene006008.t1 MTR_2g438110 31.458 391 249 7 143 530 32 406 1.64e-54 190
MS.gene006008.t1 MTR_4g125970 30.848 389 250 8 145 530 58 430 4.11e-54 190
MS.gene006008.t1 MTR_2g099620 30.513 390 252 8 144 530 24 397 5.06e-53 186
MS.gene006008.t1 MTR_2g099620 30.513 390 252 8 144 530 40 413 5.72e-53 186
MS.gene006008.t1 MTR_4g112340 35.629 334 196 9 163 488 115 437 1.38e-52 189
MS.gene006008.t1 MTR_8g018400 29.820 389 254 8 145 530 41 413 3.90e-52 184
MS.gene006008.t1 MTR_3g071620 32.419 401 231 13 146 517 15 404 4.33e-52 188
MS.gene006008.t1 MTR_2g055850 31.492 362 233 6 144 499 90 442 8.29e-52 187
MS.gene006008.t1 MTR_8g027780 34.511 368 213 10 146 493 102 461 5.07e-50 182
MS.gene006008.t1 MTR_7g076820 28.756 386 258 5 146 530 151 520 2.62e-49 179
MS.gene006008.t1 MTR_7g076830 29.016 386 257 5 146 530 144 513 3.42e-49 179
MS.gene006008.t1 MTR_1g102410 32.678 407 218 11 132 504 34 418 5.03e-49 181
MS.gene006008.t1 MTR_2g043360 28.365 416 218 8 163 505 60 468 5.71e-49 180
MS.gene006008.t1 MTR_7g076800 28.756 386 258 5 146 530 142 511 5.79e-49 178
MS.gene006008.t1 MTR_6g056080 32.533 375 229 9 140 504 101 461 9.45e-49 180
MS.gene006008.t1 MTR_4g059460 28.780 410 212 9 163 499 63 465 1.11e-48 179
MS.gene006008.t1 MTR_8g027775 32.391 389 224 11 133 493 80 457 2.74e-48 177
MS.gene006008.t1 MTR_4g010565 30.939 362 227 8 146 500 125 470 3.99e-48 176
MS.gene006008.t1 MTR_3g107420 30.641 359 232 7 146 500 48 393 3.56e-47 171
MS.gene006008.t1 MTR_1g012420 29.319 382 253 7 146 523 48 416 1.20e-46 169
MS.gene006008.t1 MTR_6g039840 29.306 389 235 9 137 501 102 474 1.90e-43 165
MS.gene006008.t1 MTR_8g027770 32.865 356 210 8 156 493 212 556 7.45e-43 163
MS.gene006008.t1 MTR_8g097000 33.148 359 217 10 156 499 299 649 1.40e-42 163
MS.gene006008.t1 MTR_2g063080 27.446 419 247 8 137 503 101 514 2.09e-41 157
MS.gene006008.t1 MTR_5g092560 33.140 344 211 9 164 499 95 427 3.31e-41 159
MS.gene006008.t1 MTR_1g061970 31.139 395 212 15 166 521 102 475 2.53e-40 153
MS.gene006008.t1 MTR_8g027780 32.945 343 202 10 146 468 102 436 1.07e-39 151
MS.gene006008.t1 MTR_7g057250 27.902 448 245 11 146 523 164 603 4.00e-39 153
MS.gene006008.t1 MTR_4g068990 31.662 379 234 13 141 510 73 435 1.74e-37 148
MS.gene006008.t1 MTR_1g083130 26.506 415 238 9 144 506 25 424 4.00e-36 143
MS.gene006008.t1 MTR_4g112320 35.294 238 143 6 259 488 21 255 4.54e-35 137
MS.gene006008.t1 MTR_3g118120 26.494 385 246 11 143 499 130 505 8.71e-34 135
MS.gene006008.t1 MTR_4g049910 29.737 380 214 10 146 499 56 408 1.09e-33 134
MS.gene006008.t1 MTR_2g043360 26.857 350 173 7 239 505 1 350 9.82e-33 132
MS.gene006008.t1 MTR_0915s0010 28.425 292 193 4 162 452 6 282 8.86e-32 124
MS.gene006008.t1 MTR_1g046570 29.603 277 181 8 264 530 126 398 3.04e-30 123
MS.gene006008.t1 MTR_6g039840 28.947 304 177 8 221 501 11 298 6.19e-29 121
MS.gene006008.t1 MTR_5g069330 26.287 369 240 12 143 500 5 352 8.42e-29 119
MS.gene006008.t1 MTR_5g069330 26.287 369 240 12 143 500 1 348 1.19e-28 119
MS.gene006008.t1 MTR_4g131750 28.426 394 219 13 135 488 72 442 5.32e-28 117
MS.gene006008.t1 MTR_4g459350 32.512 203 111 4 163 346 60 255 3.18e-26 108
MS.gene006008.t1 MTR_8g018370 23.823 361 231 7 175 530 3 324 1.50e-24 105
MS.gene006008.t1 MTR_4g077370 33.810 210 112 6 145 346 250 440 7.88e-24 105
MS.gene006008.t1 MTR_4g077370 30.806 211 102 6 145 346 2 177 1.22e-18 89.4
MS.gene006008.t1 MTR_5g092560 32.178 202 131 4 304 499 15 216 1.21e-23 105
MS.gene006008.t1 MTR_4g068990 31.925 213 136 6 304 510 15 224 2.44e-21 98.2
MS.gene006008.t1 MTR_8g042690 24.425 348 228 9 168 499 41 369 3.60e-21 97.1
MS.gene006008.t1 MTR_3g107420 30.049 203 127 5 146 346 48 237 1.94e-20 92.8
MS.gene006008.t1 MTR_8g032230 35.294 170 96 4 137 305 2 158 5.91e-20 87.8
MS.gene006008.t1 MTR_1g022305 25.731 342 176 11 167 504 26 293 8.34e-20 92.8
MS.gene006008.t1 MTR_5g077690 25.393 382 218 12 182 503 70 444 2.13e-19 92.0
MS.gene006008.t1 MTR_3g063040 23.810 357 230 10 153 496 2 329 2.24e-13 73.9
MS.gene006008.t1 MTR_8g080160 33.051 118 74 1 388 500 480 597 1.00e-12 71.6
MS.gene006008.t1 MTR_8g062720 25.743 202 132 4 320 505 345 544 4.42e-12 69.3
MS.gene006008.t1 MTR_0427s0010 28.302 212 115 6 314 508 1 192 1.02e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006008.t1 AT5G51280 87.097 589 74 1 1 589 5 591 0.0 1060
MS.gene006008.t1 AT4G33370 75.382 589 98 1 1 589 1 542 0.0 909
MS.gene006008.t1 AT1G55150 39.277 415 239 5 118 529 73 477 9.15e-100 312
MS.gene006008.t1 AT1G55150 39.277 415 239 5 118 529 98 502 6.80e-99 311
MS.gene006008.t1 AT5G63120 41.190 420 232 7 115 530 136 544 2.58e-97 309
MS.gene006008.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.38e-93 300
MS.gene006008.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.38e-93 300
MS.gene006008.t1 AT3G58510 38.272 405 231 6 134 526 141 538 1.38e-93 300
MS.gene006008.t1 AT2G47330 40.708 452 251 9 85 530 168 608 3.45e-93 303
MS.gene006008.t1 AT2G33730 37.617 428 242 4 118 527 287 707 1.04e-92 301
MS.gene006008.t1 AT3G58570 38.875 409 229 7 132 526 134 535 4.24e-92 296
MS.gene006008.t1 AT2G42520 37.897 409 233 6 132 526 147 548 6.20e-92 296
MS.gene006008.t1 AT2G42520 37.897 409 233 6 132 526 147 548 6.20e-92 296
MS.gene006008.t1 AT2G42520 37.897 409 233 6 132 526 147 548 6.20e-92 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 162 600 5.29e-90 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT1G20920 36.807 451 268 7 115 560 500 938 4.43e-88 296
MS.gene006008.t1 AT3G01540 39.512 410 226 8 128 530 142 536 1.84e-87 284
MS.gene006008.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.84e-87 284
MS.gene006008.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.84e-87 284
MS.gene006008.t1 AT3G01540 39.416 411 227 8 127 530 141 536 1.84e-87 284
MS.gene006008.t1 AT5G14610 38.765 405 228 7 132 530 149 539 7.89e-86 280
MS.gene006008.t1 AT5G14610 38.765 405 228 7 132 530 149 539 9.16e-86 280
MS.gene006008.t1 AT5G14610 38.765 405 228 7 132 530 157 547 1.57e-85 280
MS.gene006008.t1 AT3G06480 39.709 413 231 7 123 530 414 813 1.51e-80 274
MS.gene006008.t1 AT1G31970 38.462 416 220 12 127 523 95 493 4.23e-80 262
MS.gene006008.t1 AT5G14610 37.440 414 237 8 125 530 208 607 1.73e-78 262
MS.gene006008.t1 AT5G14610 39.050 379 211 7 158 530 44 408 1.85e-78 257
MS.gene006008.t1 AT5G14610 39.050 379 211 7 158 530 44 408 1.85e-78 257
MS.gene006008.t1 AT3G09620 34.581 454 245 9 115 560 367 776 6.60e-75 258
MS.gene006008.t1 AT3G09620 34.581 454 245 9 115 560 368 777 7.16e-75 257
MS.gene006008.t1 AT5G63120 39.828 349 196 6 115 459 136 474 7.27e-73 241
MS.gene006008.t1 AT5G63120 39.828 349 196 6 115 459 136 474 9.77e-73 241
MS.gene006008.t1 AT5G63120 39.828 349 196 6 115 459 136 474 9.77e-73 241
MS.gene006008.t1 AT5G63120 39.828 349 196 6 115 459 136 474 9.77e-73 241
MS.gene006008.t1 AT1G28180 38.375 357 207 5 174 527 3 349 2.32e-71 234
MS.gene006008.t1 AT1G77030 34.010 394 242 6 146 535 30 409 1.76e-65 229
MS.gene006008.t1 AT5G14610 35.754 358 211 6 128 479 153 497 7.84e-65 221
MS.gene006008.t1 AT5G60990 33.867 375 236 4 137 505 2 370 1.09e-64 219
MS.gene006008.t1 AT1G16280 33.257 436 255 11 145 567 59 471 1.49e-64 219
MS.gene006008.t1 AT3G02065 32.220 419 266 7 119 529 83 491 6.87e-64 218
MS.gene006008.t1 AT3G02065 32.220 419 266 7 119 529 83 491 6.87e-64 218
MS.gene006008.t1 AT3G09720 33.488 430 254 11 111 529 105 513 8.26e-62 214
MS.gene006008.t1 AT3G09720 33.488 430 254 11 111 529 105 513 8.26e-62 214
MS.gene006008.t1 AT3G06480 38.286 350 199 6 124 468 415 752 2.26e-61 217
MS.gene006008.t1 AT4G16630 33.824 408 237 9 145 536 168 558 4.84e-61 216
MS.gene006008.t1 AT3G22330 35.311 354 214 7 155 504 115 457 1.58e-60 212
MS.gene006008.t1 AT5G26742 32.990 388 220 6 135 506 98 461 1.80e-58 209
MS.gene006008.t1 AT5G26742 32.990 388 220 6 135 506 98 461 1.82e-58 209
MS.gene006008.t1 AT3G22310 34.626 361 221 7 148 504 120 469 6.88e-58 204
MS.gene006008.t1 AT3G22310 34.626 361 221 7 148 504 120 469 8.96e-58 204
MS.gene006008.t1 AT5G65900 33.428 353 214 7 144 488 154 493 8.05e-57 202
MS.gene006008.t1 AT3G13920 30.513 390 252 8 144 530 29 402 1.97e-56 196
MS.gene006008.t1 AT3G13920 30.513 390 252 8 144 530 39 412 2.32e-56 196
MS.gene006008.t1 AT1G51380 31.122 392 248 6 142 530 20 392 2.92e-56 195
MS.gene006008.t1 AT3G18600 33.425 362 226 6 131 488 77 427 1.34e-55 197
MS.gene006008.t1 AT5G26742 32.115 383 224 6 179 545 44 406 1.51e-55 199
MS.gene006008.t1 AT3G13920 31.183 372 237 8 162 530 52 407 3.08e-55 192
MS.gene006008.t1 AT3G19760 30.964 394 249 7 142 530 33 408 4.97e-55 192
MS.gene006008.t1 AT3G13920 30.130 385 251 7 144 525 39 408 2.59e-54 190
MS.gene006008.t1 AT3G13920 30.130 385 251 7 144 525 43 412 3.47e-54 190
MS.gene006008.t1 AT1G72730 29.820 389 254 8 145 530 42 414 3.82e-54 190
MS.gene006008.t1 AT1G54270 30.612 392 249 8 144 530 39 412 4.82e-53 187
MS.gene006008.t1 AT1G71370 32.086 374 232 9 139 499 9 373 5.30e-53 190
MS.gene006008.t1 AT3G02065 31.593 364 233 6 172 529 1 354 6.41e-53 185
MS.gene006008.t1 AT1G54270 31.283 374 234 8 162 530 52 407 9.13e-52 183
MS.gene006008.t1 AT5G62190 32.283 381 234 9 140 510 95 461 5.47e-51 186
MS.gene006008.t1 AT2G45810 30.618 356 231 4 146 500 156 496 7.55e-50 181
MS.gene006008.t1 AT5G05450 30.990 384 227 10 144 499 9 382 9.22e-50 182
MS.gene006008.t1 AT3G61240 30.337 356 230 5 146 499 126 465 1.31e-49 179
MS.gene006008.t1 AT3G61240 30.337 356 230 5 146 499 126 465 1.31e-49 179
MS.gene006008.t1 AT4G00660 29.737 380 250 5 146 524 133 496 1.43e-49 179
MS.gene006008.t1 AT4G00660 29.737 380 250 5 146 524 133 496 1.43e-49 179
MS.gene006008.t1 AT5G11170 30.789 380 231 11 134 499 31 392 2.89e-48 174
MS.gene006008.t1 AT5G11200 30.789 380 231 11 134 499 31 392 2.89e-48 174
MS.gene006008.t1 AT2G40700 29.710 414 205 10 163 499 50 454 1.09e-46 174
MS.gene006008.t1 AT1G12770 27.725 422 242 9 138 503 101 515 2.92e-45 169
MS.gene006008.t1 AT1G12770 27.725 422 242 9 138 503 101 515 2.92e-45 169
MS.gene006008.t1 AT5G54910 33.075 387 230 12 143 519 70 437 8.13e-44 167
MS.gene006008.t1 AT5G63630 31.429 350 223 6 156 493 66 410 1.29e-43 163
MS.gene006008.t1 AT5G11170 32.209 326 194 10 183 499 2 309 1.86e-43 159
MS.gene006008.t1 AT5G11200 28.637 433 233 14 134 510 31 443 4.23e-43 161
MS.gene006008.t1 AT5G63630 31.429 350 223 6 156 493 260 604 1.01e-42 164
MS.gene006008.t1 AT2G07750 31.281 406 243 10 111 493 340 732 1.16e-42 164
MS.gene006008.t1 AT5G08610 32.022 356 213 7 156 493 394 738 2.13e-42 163
MS.gene006008.t1 AT4G09730 28.646 384 232 10 143 501 111 477 6.95e-42 160
MS.gene006008.t1 AT5G11200 28.082 438 226 13 134 499 31 451 1.46e-41 157
MS.gene006008.t1 AT1G63250 31.116 421 255 12 156 556 340 745 1.77e-41 160
MS.gene006008.t1 AT5G08620 30.806 422 254 13 156 556 92 496 5.19e-41 157
MS.gene006008.t1 AT1G71280 30.838 334 190 10 137 463 11 310 1.71e-37 142
MS.gene006008.t1 AT3G53110 29.319 382 233 13 133 493 80 445 5.42e-37 144
MS.gene006008.t1 AT1G71280 30.473 338 194 10 137 467 11 314 7.87e-37 143
MS.gene006008.t1 AT4G34910 28.101 395 225 10 144 489 46 430 4.96e-33 134
MS.gene006008.t1 AT3G06980 28.460 383 238 13 144 499 374 747 5.67e-33 135
MS.gene006008.t1 AT3G16840 27.209 430 232 11 146 504 192 611 7.50e-32 131
MS.gene006008.t1 AT3G16840 27.209 430 232 11 146 504 193 612 7.51e-32 131
MS.gene006008.t1 AT1G51380 29.044 272 175 5 142 410 20 276 2.40e-28 115
MS.gene006008.t1 AT5G19210 26.579 380 243 11 134 488 66 434 1.77e-27 116
MS.gene006008.t1 AT1G51380 30.093 216 137 2 142 357 20 221 1.27e-25 107
MS.gene006008.t1 AT1G51380 30.093 216 137 2 142 357 20 221 1.94e-25 107
MS.gene006008.t1 AT4G15850 25.182 413 233 12 157 503 44 446 2.41e-23 104
MS.gene006008.t1 AT5G19210 26.180 233 148 7 279 488 46 277 3.18e-16 80.5
MS.gene006008.t1 AT5G19210 26.180 233 148 7 279 488 46 277 3.18e-16 80.5
MS.gene006008.t1 AT1G28180 36.885 122 71 1 174 295 3 118 5.11e-15 72.0
MS.gene006008.t1 AT1G27880 23.955 359 228 12 171 513 274 603 2.70e-12 70.5
MS.gene006008.t1 AT1G27880 23.955 359 228 12 171 513 274 603 2.92e-12 70.5
MS.gene006008.t1 AT4G35740 20.800 375 241 13 140 488 5 349 3.63e-12 69.7

Find 155 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAGAAAGGATTATTT+TGG 0.164744 1.3:+66641568 MS.gene006008:CDS
GTATGCCATTTCATCATTTA+AGG 0.167719 1.3:+66641153 MS.gene006008:CDS
TCTAGCGAAGTTCTGAATTT+TGG 0.173592 1.3:-66640876 None:intergenic
CTCTTCTGATGTTCTAATTT+AGG 0.202029 1.3:-66641532 None:intergenic
TGTTCTGTGACACTGATTTC+AGG 0.239425 1.3:-66640038 None:intergenic
CGTCCCACATTGACAATAAT+AGG 0.278247 1.3:-66640914 None:intergenic
ATATCCTTAAAATTCTTAAT+CGG 0.278731 1.3:-66640272 None:intergenic
GGCTGATCGATTGGTCGATT+TGG 0.290280 1.3:+66640772 MS.gene006008:CDS
GGCAAATCTTGATGTTATTC+AGG 0.295497 1.3:+66640946 MS.gene006008:CDS
TGCCTAGCCAATTCCCTTGA+TGG 0.301873 1.3:-66640530 None:intergenic
GCTGATCGATTGGTCGATTT+GGG 0.307880 1.3:+66640773 MS.gene006008:CDS
CAGTGGCATATAATTGTTAA+TGG 0.312190 1.3:+66640233 MS.gene006008:CDS
TGTGCAACCAACGCCTATTC+AGG 0.330594 1.3:+66640340 MS.gene006008:CDS
TTGATGACATGTTGAATATC+AGG 0.337184 1.3:-66641232 None:intergenic
TGTGCATATTGTGGCGGGCT+TGG 0.337993 1.3:+66641490 MS.gene006008:CDS
ATTATGATGCCGATTGTTCC+TGG 0.348651 1.3:+66640479 MS.gene006008:CDS
TCCCTCCCAGATAAAATAAC+TGG 0.356395 1.3:-66640374 None:intergenic
AGCTTCCATGGCGCGACGCT+TGG 0.358137 1.3:-66639889 None:intergenic
TATACTGAGCCTTTGCCTAC+TGG 0.358544 1.3:+66640149 MS.gene006008:CDS
TTCAACGACTTTCAGTTTCT+CGG 0.364987 1.3:-66639967 None:intergenic
TATTTGTCCATCAAGGGAAT+TGG 0.368905 1.3:+66640523 MS.gene006008:CDS
TTGGCATAGTAGCAGAAAAT+AGG 0.371521 1.3:-66640853 None:intergenic
TTCTCACAAAATATAAGAAC+AGG 0.372394 1.3:-66641037 None:intergenic
TATCCTTAAAATTCTTAATC+GGG 0.374649 1.3:-66640271 None:intergenic
ATCAGGAAAATCTAAACCTT+TGG 0.383694 1.3:-66641215 None:intergenic
TCAACCAGCTCAGCCAAAAC+AGG 0.388073 1.3:-66641418 None:intergenic
ACCGGAAGATGTGGCAAAAC+TGG 0.393311 1.3:+66641304 MS.gene006008:CDS
TCCAGCCTTAAATGATGAAA+TGG 0.394298 1.3:-66641158 None:intergenic
GTCTGATTATTTGTCCATCA+AGG 0.395594 1.3:+66640516 MS.gene006008:CDS
GGAAGACCCTGCACCTGAAT+AGG 0.399752 1.3:-66640353 None:intergenic
GAACTTCGCTAGAAGTGCTT+TGG 0.409464 1.3:+66640886 MS.gene006008:CDS
GAAAATTATGTCCATAGGAT+TGG 0.415181 1.3:+66641277 MS.gene006008:CDS
ATTTCTTCATTATCTTCCAT+TGG 0.416148 1.3:-66641442 None:intergenic
GTGGAAGCCGTGGCTATTCA+TGG 0.417643 1.3:+66641106 MS.gene006008:CDS
CATATAGTTGTTGCAACTCC+CGG 0.423420 1.3:+66640680 MS.gene006008:CDS
CTCAGGCCTTTGCTTTGTAT+CGG 0.425118 1.3:+66640611 MS.gene006008:CDS
ATTGTCAATGTGGGACGTGC+AGG 0.426137 1.3:+66640920 MS.gene006008:CDS
TAAGCCAAGTCTACTTGTTA+AGG 0.431259 1.3:+66639992 MS.gene006008:CDS
ATGGCGCGACGCTTGGCCAC+AGG 0.433274 1.3:-66639882 None:intergenic
CAAGCAATGTTGTCTCACTT+TGG 0.433879 1.3:-66641354 None:intergenic
AACATCTTCAAAATCGGATC+CGG 0.439066 1.3:-66640302 None:intergenic
ATACTGAGCCTTTGCCTACT+GGG 0.441611 1.3:+66640150 MS.gene006008:CDS
GGAAGAAGAAGATGATTATG+AGG 0.447944 1.3:+66639851 MS.gene006008:CDS
TTGTTACCTTTGAAGGAAGC+TGG 0.448833 1.3:+66640578 MS.gene006008:CDS
CTAATTCACGAACCGACATA+AGG 0.449435 1.3:-66640112 None:intergenic
TCTGTTTAGCTTCTTGCAAA+AGG 0.453849 1.3:-66641387 None:intergenic
GCCATTTCATCATTTAAGGC+TGG 0.454604 1.3:+66641157 MS.gene006008:CDS
GTTCCTGGGGAAGGTCCGTT+TGG 0.454718 1.3:+66640494 MS.gene006008:CDS
TTCCGGTACGTCCAATCCTA+TGG 0.458107 1.3:-66641288 None:intergenic
ATCCTTTCTATTATTTGCAA+TGG 0.461654 1.3:-66641560 None:intergenic
TACGGGTTCTGGTAAAACTT+TGG 0.465912 1.3:+66640415 MS.gene006008:CDS
TTTGAAGGAAGCTGGATATC+CGG 0.466679 1.3:+66640586 MS.gene006008:CDS
TAATTCACGAACCGACATAA+GGG 0.473252 1.3:-66640111 None:intergenic
AAGCTGGATATCCGGAGCTC+AGG 0.476787 1.3:+66640594 MS.gene006008:CDS
CATGAGTATCTTCTCTTGAA+AGG 0.476814 1.3:+66641082 MS.gene006008:CDS
TTATCTGGGAGGGATATGAT+TGG 0.476899 1.3:+66640383 MS.gene006008:CDS
TATTCATGGAGGCAAGGATC+AGG 0.479994 1.3:+66641120 MS.gene006008:CDS
CTCAGTATAAGTAATCCCTT+TGG 0.481450 1.3:-66640135 None:intergenic
CGTTGGTTGCACAATCCCCT+TGG 0.489261 1.3:-66640330 None:intergenic
GGACCTTCCCCAGGAACAAT+CGG 0.494587 1.3:-66640488 None:intergenic
TGTGGCCAAGCGTCGCGCCA+TGG 0.495459 1.3:+66639884 MS.gene006008:CDS
GAAGAAATCACAGGCATAAG+TGG 0.497165 1.3:+66641457 MS.gene006008:CDS
GGAGATGATTGAGAATTTGT+CGG 0.499681 1.3:+66640079 MS.gene006008:CDS
CAACATATCCTTCAACCTCC+CGG 0.501564 1.3:-66640699 None:intergenic
GATGATTATGATGGCAATGC+AGG 0.503462 1.3:+66640451 MS.gene006008:CDS
TGCAACTCCCGGGAGGTTGA+AGG 0.505159 1.3:+66640691 MS.gene006008:CDS
ACCAACGCCTATTCAGGTGC+AGG 0.506705 1.3:+66640346 MS.gene006008:CDS
TTGAAGATGTTGAAAACCAA+GGG 0.508448 1.3:+66640314 MS.gene006008:CDS
CAAAGCAAAGGCCTGAGCTC+CGG 0.515925 1.3:-66640605 None:intergenic
TGTGCTTCCGATGATTATGA+TGG 0.517107 1.3:+66640442 MS.gene006008:CDS
TTATGATGCCGATTGTTCCT+GGG 0.517162 1.3:+66640480 MS.gene006008:CDS
ATGCCGATTGTTCCTGGGGA+AGG 0.520774 1.3:+66640485 MS.gene006008:CDS
ATCCTTAAAATTCTTAATCG+GGG 0.521926 1.3:-66640270 None:intergenic
AGGCCTTTGCTTTGTATCGG+TGG 0.524480 1.3:+66640614 MS.gene006008:CDS
GGCCATTGCAAATAATAGAA+AGG 0.524636 1.3:+66641558 MS.gene006008:CDS
GCAACTGATGTTGCATCCAA+AGG 0.525642 1.3:+66641199 MS.gene006008:CDS
GGATATCCAGCTTCCTTCAA+AGG 0.531513 1.3:-66640584 None:intergenic
GTTAGATGAGGCTGATCGAT+TGG 0.532301 1.3:+66640763 MS.gene006008:CDS
GGCTGAGCTGGTTGATCCAA+TGG 0.532926 1.3:+66641426 MS.gene006008:CDS
CACAGGCATAAGTGGTGTCA+AGG 0.533189 1.3:+66641465 MS.gene006008:CDS
ACAGCTTGAGATTGTCAAGA+AGG 0.534600 1.3:+66640652 MS.gene006008:CDS
GTCCATCAAGGGAATTGGCT+AGG 0.535331 1.3:+66640528 MS.gene006008:CDS
TTGTCAATGTGGGACGTGCA+GGG 0.535671 1.3:+66640921 MS.gene006008:CDS
ATATAGTTGTTGCAACTCCC+GGG 0.536020 1.3:+66640681 MS.gene006008:CDS
CAATGTGGGACGTGCAGGGG+CGG 0.538248 1.3:+66640925 MS.gene006008:CDS
AAATTGAAAATTATGTCCAT+AGG 0.540038 1.3:+66641272 MS.gene006008:CDS
TTTGAAGATGTTGAAAACCA+AGG 0.541708 1.3:+66640313 MS.gene006008:CDS
TCTGATTATTTGTCCATCAA+GGG 0.542604 1.3:+66640517 MS.gene006008:CDS
AGAAGATTCTACAACGCAAA+GGG 0.543952 1.3:+66639913 MS.gene006008:CDS
GTCCATAGGATTGGACGTAC+CGG 0.544392 1.3:+66641286 MS.gene006008:CDS
CGGTTCGTGAATTAGCCAAA+GGG 0.544464 1.3:+66640120 MS.gene006008:CDS
AGGGCTGTGCATATTGTGGC+GGG 0.545255 1.3:+66641485 MS.gene006008:CDS
TATAAGAAGGATGTCGAAGA+AGG 0.546105 1.3:+66640190 MS.gene006008:CDS
TAGAATCTTCTGAGCTTCCA+TGG 0.548818 1.3:-66639901 None:intergenic
ACAGATTGTTCAACAAGAGA+AGG 0.551879 1.3:+66640058 MS.gene006008:CDS
CGGGAGGTTGAAGGATATGT+TGG 0.553032 1.3:+66640700 MS.gene006008:CDS
AACATATCCTTCAACCTCCC+GGG 0.553168 1.3:-66640698 None:intergenic
AGCCTCCTTTGCATATAAGA+AGG 0.556618 1.3:+66640177 MS.gene006008:CDS
CCCTGCACCTGAATAGGCGT+TGG 0.557748 1.3:-66640347 None:intergenic
TTGATCACTTCAAAGCTCAA+AGG 0.557864 1.3:+66640822 MS.gene006008:CDS
GACATCCTTCTTATATGCAA+AGG 0.558548 1.3:-66640182 None:intergenic
GGACAAATAATCAGACCAAA+CGG 0.559558 1.3:-66640509 None:intergenic
GATGCCTTAACAAGTAGACT+TGG 0.560699 1.3:-66639996 None:intergenic
TGCATTGCCATCATAATCAT+CGG 0.564463 1.3:-66640449 None:intergenic
GGCTTCCACCCAGTAGGCAA+AGG 0.565662 1.3:-66640158 None:intergenic
GGCTGGAAAGAAAGATGTGT+TGG 0.568095 1.3:+66641174 MS.gene006008:CDS
TGGCGCGACGCTTGGCCACA+GGG 0.572510 1.3:-66639881 None:intergenic
AAAACCTATTATTGTCAATG+TGG 0.574587 1.3:+66640910 MS.gene006008:CDS
GTGATTTGATTCAGAAACAG+TGG 0.579699 1.3:+66640216 MS.gene006008:CDS
GTTCTAATTTAGGACAATCA+CGG 0.582056 1.3:-66641522 None:intergenic
CAGCTTGAGATTGTCAAGAA+GGG 0.585138 1.3:+66640653 MS.gene006008:CDS
CAACCAGCTCAGCCAAAACA+GGG 0.585303 1.3:-66641417 None:intergenic
AAGGGCTGTGCATATTGTGG+CGG 0.588782 1.3:+66641484 MS.gene006008:CDS
TTGGATCTGGAGGTTACCGA+GGG 0.589965 1.3:+66641587 MS.gene006008:CDS
TGTCAATGTGGGACGTGCAG+GGG 0.592163 1.3:+66640922 MS.gene006008:CDS
AAACCTATTATTGTCAATGT+GGG 0.592275 1.3:+66640911 MS.gene006008:CDS
GTCAAGGGCTGTGCATATTG+TGG 0.594696 1.3:+66641481 MS.gene006008:CDS
GAAGATAATGAAGAAATCAC+AGG 0.595506 1.3:+66641448 MS.gene006008:CDS
TAGGTATTTAACGTTAGATG+AGG 0.597304 1.3:+66640751 MS.gene006008:CDS
ACAGGCATAAGTGGTGTCAA+GGG 0.600892 1.3:+66641466 MS.gene006008:CDS
AGACCAAACGGACCTTCCCC+AGG 0.602098 1.3:-66640497 None:intergenic
TCCTTAAAATTCTTAATCGG+GGG 0.602509 1.3:-66640269 None:intergenic
ATTGGACGTACCGGAAGATG+TGG 0.605046 1.3:+66641295 MS.gene006008:CDS
ACAGCTTTCAAATTTCCCCT+CGG 0.605453 1.3:-66641603 None:intergenic
AAATGAATCTTGATAACTGT+AGG 0.605954 1.3:+66640732 MS.gene006008:CDS
CAGAAGATTCTACAACGCAA+AGG 0.606512 1.3:+66639912 MS.gene006008:CDS
TCGGTTCGTGAATTAGCCAA+AGG 0.607239 1.3:+66640119 MS.gene006008:CDS
TATGATGCCGATTGTTCCTG+GGG 0.607823 1.3:+66640481 MS.gene006008:CDS
CGTGGCTATTCATGGAGGCA+AGG 0.609440 1.3:+66641114 MS.gene006008:CDS
TTTGGATCTGGAGGTTACCG+AGG 0.611360 1.3:+66641586 MS.gene006008:CDS
ATCCTTCTTATATGCAAAGG+AGG 0.611900 1.3:-66640179 None:intergenic
GTATCTTCTCTTGAAAGGAG+TGG 0.613245 1.3:+66641087 MS.gene006008:CDS
ACCAGCTCAGCCAAAACAGG+GGG 0.618612 1.3:-66641415 None:intergenic
GATTATGATGGCAATGCAGG+AGG 0.626164 1.3:+66640454 MS.gene006008:CDS
CTTGCCTCCATGAATAGCCA+CGG 0.627088 1.3:-66641113 None:intergenic
AAATCTTGATGTTATTCAGG+AGG 0.630055 1.3:+66640949 MS.gene006008:CDS
GGTAGAGTATGTCAAGCAAG+AGG 0.633475 1.3:+66640970 MS.gene006008:CDS
ATTAGAACATCAGAAGAGTG+TGG 0.644869 1.3:+66641537 MS.gene006008:CDS
GGATAAGAAAACCCTTATGT+CGG 0.648731 1.3:+66640100 MS.gene006008:CDS
TCACAAAATATAAGAACAGG+GGG 0.651713 1.3:-66641034 None:intergenic
TCTCACAAAATATAAGAACA+GGG 0.655996 1.3:-66641036 None:intergenic
CTGAGCCTTTGCCTACTGGG+TGG 0.663961 1.3:+66640153 MS.gene006008:CDS
TGAAGATGTTGAAAACCAAG+GGG 0.665813 1.3:+66640315 MS.gene006008:CDS
CCAACGCCTATTCAGGTGCA+GGG 0.667366 1.3:+66640347 MS.gene006008:CDS
ATCATCTTCTTCGATCGCAG+CGG 0.668693 1.3:-66639943 None:intergenic
AAAGGAGGCTTCCACCCAGT+AGG 0.671260 1.3:-66640164 None:intergenic
CTCACAAAATATAAGAACAG+GGG 0.671503 1.3:-66641035 None:intergenic
CTTGAAAGGAGTGGAAGCCG+TGG 0.671745 1.3:+66641096 MS.gene006008:CDS
ATTCCACCGATACAAAGCAA+AGG 0.674412 1.3:-66640617 None:intergenic
AACCAGCTCAGCCAAAACAG+GGG 0.687019 1.3:-66641416 None:intergenic
TAGTTGTTGCAACTCCCGGG+AGG 0.714712 1.3:+66640684 MS.gene006008:CDS
GAAGCCGTGGCTATTCATGG+AGG 0.745575 1.3:+66641109 MS.gene006008:CDS
CCAGCTCAGCCAAAACAGGG+GGG 0.756991 1.3:-66641414 None:intergenic
TTATGAGGAGTATATCCCTG+TGG 0.764837 1.3:+66639866 MS.gene006008:CDS
TGGATCTGGAGGTTACCGAG+GGG 0.774006 1.3:+66641588 MS.gene006008:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCCTTAAAATTCTTAAT+CGG - chr1.3:66640275-66640294 None:intergenic 15.0%
!!! AATAATAGAAAGGATTATTT+TGG + chr1.3:66641568-66641587 MS.gene006008:CDS 15.0%
!! AAATTGAAAATTATGTCCAT+AGG + chr1.3:66641272-66641291 MS.gene006008:CDS 20.0%
!! TATCCTTAAAATTCTTAATC+GGG - chr1.3:66640274-66640293 None:intergenic 20.0%
!!! TCTTATATTTTGTGAGAATA+AGG + chr1.3:66641042-66641061 MS.gene006008:CDS 20.0%
!!! TTAAGAATTTTAAGGATATG+AGG + chr1.3:66640276-66640295 MS.gene006008:CDS 20.0%
! AAAACCTATTATTGTCAATG+TGG + chr1.3:66640910-66640929 MS.gene006008:CDS 25.0%
! AAACCTATTATTGTCAATGT+GGG + chr1.3:66640911-66640930 MS.gene006008:CDS 25.0%
! ATCCTTAAAATTCTTAATCG+GGG - chr1.3:66640273-66640292 None:intergenic 25.0%
! ATCCTTTCTATTATTTGCAA+TGG - chr1.3:66641563-66641582 None:intergenic 25.0%
! ATTTCTTCATTATCTTCCAT+TGG - chr1.3:66641445-66641464 None:intergenic 25.0%
! TCTCACAAAATATAAGAACA+GGG - chr1.3:66641039-66641058 None:intergenic 25.0%
! TTCTCACAAAATATAAGAAC+AGG - chr1.3:66641040-66641059 None:intergenic 25.0%
!! AAATGAATCTTGATAACTGT+AGG + chr1.3:66640732-66640751 MS.gene006008:CDS 25.0%
!! ACATAATTTTCAATTTCAGC+TGG - chr1.3:66641268-66641287 None:intergenic 25.0%
!! AGAATTTTTGTTACCTTTGA+AGG + chr1.3:66640571-66640590 MS.gene006008:CDS 25.0%
!! ATCAAGATTCATTTTCTTCT+TGG - chr1.3:66640726-66640745 None:intergenic 25.0%
!! GTTTTCAACATCTTCAAAAT+CGG - chr1.3:66640311-66640330 None:intergenic 25.0%
!!! TATGATTGGAATTGCTTTTA+CGG + chr1.3:66640397-66640416 MS.gene006008:CDS 25.0%
AAATCTTGATGTTATTCAGG+AGG + chr1.3:66640949-66640968 MS.gene006008:CDS 30.0%
ATCAGGAAAATCTAAACCTT+TGG - chr1.3:66641218-66641237 None:intergenic 30.0%
CAGTGGCATATAATTGTTAA+TGG + chr1.3:66640233-66640252 MS.gene006008:CDS 30.0%
CTCACAAAATATAAGAACAG+GGG - chr1.3:66641038-66641057 None:intergenic 30.0%
CTCTTCTGATGTTCTAATTT+AGG - chr1.3:66641535-66641554 None:intergenic 30.0%
GAAAATTATGTCCATAGGAT+TGG + chr1.3:66641277-66641296 MS.gene006008:CDS 30.0%
GAAGATAATGAAGAAATCAC+AGG + chr1.3:66641448-66641467 MS.gene006008:CDS 30.0%
TAGGTATTTAACGTTAGATG+AGG + chr1.3:66640751-66640770 MS.gene006008:CDS 30.0%
TCACAAAATATAAGAACAGG+GGG - chr1.3:66641037-66641056 None:intergenic 30.0%
TCCTTAAAATTCTTAATCGG+GGG - chr1.3:66640272-66640291 None:intergenic 30.0%
TCTGATTATTTGTCCATCAA+GGG + chr1.3:66640517-66640536 MS.gene006008:CDS 30.0%
TTGAAGATGTTGAAAACCAA+GGG + chr1.3:66640314-66640333 MS.gene006008:CDS 30.0%
TTTGAAGATGTTGAAAACCA+AGG + chr1.3:66640313-66640332 MS.gene006008:CDS 30.0%
! GTATGCCATTTCATCATTTA+AGG + chr1.3:66641153-66641172 MS.gene006008:CDS 30.0%
! GTTCTAATTTAGGACAATCA+CGG - chr1.3:66641525-66641544 None:intergenic 30.0%
! TTGATGACATGTTGAATATC+AGG - chr1.3:66641235-66641254 None:intergenic 30.0%
!! ATGATTGGAATTGCTTTTAC+GGG + chr1.3:66640398-66640417 MS.gene006008:CDS 30.0%
!! GTCTTCCAGTTATTTTATCT+GGG + chr1.3:66640369-66640388 MS.gene006008:CDS 30.0%
!! TTTTAAGGATATGAGGTTTC+CGG + chr1.3:66640283-66640302 MS.gene006008:CDS 30.0%
!!! AGAAAGGATTATTTTGGATC+TGG + chr1.3:66641574-66641593 MS.gene006008:CDS 30.0%
AACATCTTCAAAATCGGATC+CGG - chr1.3:66640305-66640324 None:intergenic 35.0%
ACAGATTGTTCAACAAGAGA+AGG + chr1.3:66640058-66640077 MS.gene006008:CDS 35.0%
AGAAGATTCTACAACGCAAA+GGG + chr1.3:66639913-66639932 MS.gene006008:CDS 35.0%
ATCCTTCTTATATGCAAAGG+AGG - chr1.3:66640182-66640201 None:intergenic 35.0%
ATTAGAACATCAGAAGAGTG+TGG + chr1.3:66641537-66641556 MS.gene006008:CDS 35.0%
CATGAGTATCTTCTCTTGAA+AGG + chr1.3:66641082-66641101 MS.gene006008:CDS 35.0%
CTCAGTATAAGTAATCCCTT+TGG - chr1.3:66640138-66640157 None:intergenic 35.0%
GACATCCTTCTTATATGCAA+AGG - chr1.3:66640185-66640204 None:intergenic 35.0%
GGAAGAAGAAGATGATTATG+AGG + chr1.3:66639851-66639870 MS.gene006008:CDS 35.0%
GGACAAATAATCAGACCAAA+CGG - chr1.3:66640512-66640531 None:intergenic 35.0%
GGAGATGATTGAGAATTTGT+CGG + chr1.3:66640079-66640098 MS.gene006008:CDS 35.0%
GGATAAGAAAACCCTTATGT+CGG + chr1.3:66640100-66640119 MS.gene006008:CDS 35.0%
GGCAAATCTTGATGTTATTC+AGG + chr1.3:66640946-66640965 MS.gene006008:CDS 35.0%
GGCCATTGCAAATAATAGAA+AGG + chr1.3:66641558-66641577 MS.gene006008:CDS 35.0%
GTCTGATTATTTGTCCATCA+AGG + chr1.3:66640516-66640535 MS.gene006008:CDS 35.0%
GTGATTTGATTCAGAAACAG+TGG + chr1.3:66640216-66640235 MS.gene006008:CDS 35.0%
TAATTCACGAACCGACATAA+GGG - chr1.3:66640114-66640133 None:intergenic 35.0%
TATAAGAAGGATGTCGAAGA+AGG + chr1.3:66640190-66640209 MS.gene006008:CDS 35.0%
TATTTGTCCATCAAGGGAAT+TGG + chr1.3:66640523-66640542 MS.gene006008:CDS 35.0%
TCCAGCCTTAAATGATGAAA+TGG - chr1.3:66641161-66641180 None:intergenic 35.0%
TGAAGATGTTGAAAACCAAG+GGG + chr1.3:66640315-66640334 MS.gene006008:CDS 35.0%
TGCATTGCCATCATAATCAT+CGG - chr1.3:66640452-66640471 None:intergenic 35.0%
TTAAAATTCTTAATCGGGGG+CGG - chr1.3:66640269-66640288 None:intergenic 35.0%
TTCAACGACTTTCAGTTTCT+CGG - chr1.3:66639970-66639989 None:intergenic 35.0%
TTGATCACTTCAAAGCTCAA+AGG + chr1.3:66640822-66640841 MS.gene006008:CDS 35.0%
TTGGCATAGTAGCAGAAAAT+AGG - chr1.3:66640856-66640875 None:intergenic 35.0%
! TAAGCCAAGTCTACTTGTTA+AGG + chr1.3:66639992-66640011 MS.gene006008:CDS 35.0%
! TCTGTTTAGCTTCTTGCAAA+AGG - chr1.3:66641390-66641409 None:intergenic 35.0%
! TTTTGCAAGAAGCTAAACAG+AGG + chr1.3:66641389-66641408 MS.gene006008:CDS 35.0%
!! GGTCTTCCAGTTATTTTATC+TGG + chr1.3:66640368-66640387 MS.gene006008:CDS 35.0%
!! TCCAGTTATTTTATCTGGGA+GGG + chr1.3:66640373-66640392 MS.gene006008:CDS 35.0%
!! TTCCAGTTATTTTATCTGGG+AGG + chr1.3:66640372-66640391 MS.gene006008:CDS 35.0%
!!! AAGGATTATTTTGGATCTGG+AGG + chr1.3:66641577-66641596 MS.gene006008:CDS 35.0%
!!! TCTAGCGAAGTTCTGAATTT+TGG - chr1.3:66640879-66640898 None:intergenic 35.0%
ACAGCTTGAGATTGTCAAGA+AGG + chr1.3:66640652-66640671 MS.gene006008:CDS 40.0%
AGCCTCCTTTGCATATAAGA+AGG + chr1.3:66640177-66640196 MS.gene006008:CDS 40.0%
ATATAGTTGTTGCAACTCCC+GGG + chr1.3:66640681-66640700 MS.gene006008:CDS 40.0%
ATTCCACCGATACAAAGCAA+AGG - chr1.3:66640620-66640639 None:intergenic 40.0%
CAAAATATAAGAACAGGGGG+TGG - chr1.3:66641034-66641053 None:intergenic 40.0%
CAAGCAATGTTGTCTCACTT+TGG - chr1.3:66641357-66641376 None:intergenic 40.0%
CAGAAGATTCTACAACGCAA+AGG + chr1.3:66639912-66639931 MS.gene006008:CDS 40.0%
CAGCTTGAGATTGTCAAGAA+GGG + chr1.3:66640653-66640672 MS.gene006008:CDS 40.0%
CATATAGTTGTTGCAACTCC+CGG + chr1.3:66640680-66640699 MS.gene006008:CDS 40.0%
CGTCCCACATTGACAATAAT+AGG - chr1.3:66640917-66640936 None:intergenic 40.0%
CTAATTCACGAACCGACATA+AGG - chr1.3:66640115-66640134 None:intergenic 40.0%
GAAGAAATCACAGGCATAAG+TGG + chr1.3:66641457-66641476 MS.gene006008:CDS 40.0%
GATGATTATGATGGCAATGC+AGG + chr1.3:66640451-66640470 MS.gene006008:CDS 40.0%
GATGCCTTAACAAGTAGACT+TGG - chr1.3:66639999-66640018 None:intergenic 40.0%
GTATCTTCTCTTGAAAGGAG+TGG + chr1.3:66641087-66641106 MS.gene006008:CDS 40.0%
TAGAATCTTCTGAGCTTCCA+TGG - chr1.3:66639904-66639923 None:intergenic 40.0%
TCCCTCCCAGATAAAATAAC+TGG - chr1.3:66640377-66640396 None:intergenic 40.0%
TGTGCTTCCGATGATTATGA+TGG + chr1.3:66640442-66640461 MS.gene006008:CDS 40.0%
TTATCTGGGAGGGATATGAT+TGG + chr1.3:66640383-66640402 MS.gene006008:CDS 40.0%
TTTGAAGGAAGCTGGATATC+CGG + chr1.3:66640586-66640605 MS.gene006008:CDS 40.0%
! ATTATGATGCCGATTGTTCC+TGG + chr1.3:66640479-66640498 MS.gene006008:CDS 40.0%
! GCCATTTCATCATTTAAGGC+TGG + chr1.3:66641157-66641176 MS.gene006008:CDS 40.0%
! GCCCCCGATTAAGAATTTTA+AGG + chr1.3:66640268-66640287 MS.gene006008:CDS 40.0%
! TACGGGTTCTGGTAAAACTT+TGG + chr1.3:66640415-66640434 MS.gene006008:CDS 40.0%
! TTATGAGGAGTATATCCCTG+TGG + chr1.3:66639866-66639885 MS.gene006008:CDS 40.0%
! TTATGATGCCGATTGTTCCT+GGG + chr1.3:66640480-66640499 MS.gene006008:CDS 40.0%
! TTGTTACCTTTGAAGGAAGC+TGG + chr1.3:66640578-66640597 MS.gene006008:CDS 40.0%
!! TGTTCTGTGACACTGATTTC+AGG - chr1.3:66640041-66640060 None:intergenic 40.0%
!!! GCGAAGTTCTGAATTTTGGT+TGG - chr1.3:66640875-66640894 None:intergenic 40.0%
AACATATCCTTCAACCTCCC+GGG - chr1.3:66640701-66640720 None:intergenic 45.0%
ATACTGAGCCTTTGCCTACT+GGG + chr1.3:66640150-66640169 MS.gene006008:CDS 45.0%
ATCATCTTCTTCGATCGCAG+CGG - chr1.3:66639946-66639965 None:intergenic 45.0%
CAACATATCCTTCAACCTCC+CGG - chr1.3:66640702-66640721 None:intergenic 45.0%
CGGTTCGTGAATTAGCCAAA+GGG + chr1.3:66640120-66640139 MS.gene006008:CDS 45.0%
CTCAGGCCTTTGCTTTGTAT+CGG + chr1.3:66640611-66640630 MS.gene006008:CDS 45.0%
GATTATGATGGCAATGCAGG+AGG + chr1.3:66640454-66640473 MS.gene006008:CDS 45.0%
GCAACTGATGTTGCATCCAA+AGG + chr1.3:66641199-66641218 MS.gene006008:CDS 45.0%
GGATATCCAGCTTCCTTCAA+AGG - chr1.3:66640587-66640606 None:intergenic 45.0%
GGCTGGAAAGAAAGATGTGT+TGG + chr1.3:66641174-66641193 MS.gene006008:CDS 45.0%
GGTAGAGTATGTCAAGCAAG+AGG + chr1.3:66640970-66640989 MS.gene006008:CDS 45.0%
GTTAGATGAGGCTGATCGAT+TGG + chr1.3:66640763-66640782 MS.gene006008:CDS 45.0%
TATACTGAGCCTTTGCCTAC+TGG + chr1.3:66640149-66640168 MS.gene006008:CDS 45.0%
TATTCATGGAGGCAAGGATC+AGG + chr1.3:66641120-66641139 MS.gene006008:CDS 45.0%
! ACAGGCATAAGTGGTGTCAA+GGG + chr1.3:66641466-66641485 MS.gene006008:CDS 45.0%
! ACCAGTTTTGCCACATCTTC+CGG - chr1.3:66641308-66641327 None:intergenic 45.0%
! GCTGATCGATTGGTCGATTT+GGG + chr1.3:66640773-66640792 MS.gene006008:CDS 45.0%
! TATGATGCCGATTGTTCCTG+GGG + chr1.3:66640481-66640500 MS.gene006008:CDS 45.0%
! TCGGTTCGTGAATTAGCCAA+AGG + chr1.3:66640119-66640138 MS.gene006008:CDS 45.0%
!! GAACTTCGCTAGAAGTGCTT+TGG + chr1.3:66640886-66640905 MS.gene006008:CDS 45.0%
!! GGAATTGCTTTTACGGGTTC+TGG + chr1.3:66640404-66640423 MS.gene006008:CDS 45.0%
!!! GAGTTTTTTGAAGGCACTCG+AGG - chr1.3:66641012-66641031 None:intergenic 45.0%
!!! TTTTTTGAAGGCACTCGAGG+AGG - chr1.3:66641009-66641028 None:intergenic 45.0%
AACCAGCTCAGCCAAAACAG+GGG - chr1.3:66641419-66641438 None:intergenic 50.0%
AAGGGCTGTGCATATTGTGG+CGG + chr1.3:66641484-66641503 MS.gene006008:CDS 50.0%
ACCGGAAGATGTGGCAAAAC+TGG + chr1.3:66641304-66641323 MS.gene006008:CDS 50.0%
AGGCCTTTGCTTTGTATCGG+TGG + chr1.3:66640614-66640633 MS.gene006008:CDS 50.0%
ATTGGACGTACCGGAAGATG+TGG + chr1.3:66641295-66641314 MS.gene006008:CDS 50.0%
ATTGTCAATGTGGGACGTGC+AGG + chr1.3:66640920-66640939 MS.gene006008:CDS 50.0%
CAACCAGCTCAGCCAAAACA+GGG - chr1.3:66641420-66641439 None:intergenic 50.0%
CGGGAGGTTGAAGGATATGT+TGG + chr1.3:66640700-66640719 MS.gene006008:CDS 50.0%
CTTGCCTCCATGAATAGCCA+CGG - chr1.3:66641116-66641135 None:intergenic 50.0%
GTCAAGGGCTGTGCATATTG+TGG + chr1.3:66641481-66641500 MS.gene006008:CDS 50.0%
GTCCATAGGATTGGACGTAC+CGG + chr1.3:66641286-66641305 MS.gene006008:CDS 50.0%
GTCCATCAAGGGAATTGGCT+AGG + chr1.3:66640528-66640547 MS.gene006008:CDS 50.0%
TCAACCAGCTCAGCCAAAAC+AGG - chr1.3:66641421-66641440 None:intergenic 50.0%
TGCCTAGCCAATTCCCTTGA+TGG - chr1.3:66640533-66640552 None:intergenic 50.0%
TGTGCAACCAACGCCTATTC+AGG + chr1.3:66640340-66640359 MS.gene006008:CDS 50.0%
TTCCGGTACGTCCAATCCTA+TGG - chr1.3:66641291-66641310 None:intergenic 50.0%
TTGGATCTGGAGGTTACCGA+GGG + chr1.3:66641587-66641606 MS.gene006008:CDS 50.0%
TTGTCAATGTGGGACGTGCA+GGG + chr1.3:66640921-66640940 MS.gene006008:CDS 50.0%
TTTGGATCTGGAGGTTACCG+AGG + chr1.3:66641586-66641605 MS.gene006008:CDS 50.0%
! CACAGGCATAAGTGGTGTCA+AGG + chr1.3:66641465-66641484 MS.gene006008:CDS 50.0%
! GGCTGATCGATTGGTCGATT+TGG + chr1.3:66640772-66640791 MS.gene006008:CDS 50.0%
!!! CAGGGGGTGGAGTTTTTTGA+AGG - chr1.3:66641021-66641040 None:intergenic 50.0%
AAAGGAGGCTTCCACCCAGT+AGG - chr1.3:66640167-66640186 None:intergenic 55.0%
AAGCTGGATATCCGGAGCTC+AGG + chr1.3:66640594-66640613 MS.gene006008:CDS 55.0%
ACCAACGCCTATTCAGGTGC+AGG + chr1.3:66640346-66640365 MS.gene006008:CDS 55.0%
ACCAGCTCAGCCAAAACAGG+GGG - chr1.3:66641418-66641437 None:intergenic 55.0%
AGGGCTGTGCATATTGTGGC+GGG + chr1.3:66641485-66641504 MS.gene006008:CDS 55.0%
CAAAGCAAAGGCCTGAGCTC+CGG - chr1.3:66640608-66640627 None:intergenic 55.0%
CCAACGCCTATTCAGGTGCA+GGG + chr1.3:66640347-66640366 MS.gene006008:CDS 55.0%
CGTGGCTATTCATGGAGGCA+AGG + chr1.3:66641114-66641133 MS.gene006008:CDS 55.0%
CTTGAAAGGAGTGGAAGCCG+TGG + chr1.3:66641096-66641115 MS.gene006008:CDS 55.0%
GAAGCCGTGGCTATTCATGG+AGG + chr1.3:66641109-66641128 MS.gene006008:CDS 55.0%
GGAAGACCCTGCACCTGAAT+AGG - chr1.3:66640356-66640375 None:intergenic 55.0%
GGACCTTCCCCAGGAACAAT+CGG - chr1.3:66640491-66640510 None:intergenic 55.0%
GGCTGAGCTGGTTGATCCAA+TGG + chr1.3:66641426-66641445 MS.gene006008:CDS 55.0%
GTGGAAGCCGTGGCTATTCA+TGG + chr1.3:66641106-66641125 MS.gene006008:CDS 55.0%
TAGTTGTTGCAACTCCCGGG+AGG + chr1.3:66640684-66640703 MS.gene006008:CDS 55.0%
TGGATCTGGAGGTTACCGAG+GGG + chr1.3:66641588-66641607 MS.gene006008:CDS 55.0%
TGTCAATGTGGGACGTGCAG+GGG + chr1.3:66640922-66640941 MS.gene006008:CDS 55.0%
! ACAGAGGATCCCCCCTGTTT+TGG + chr1.3:66641405-66641424 MS.gene006008:CDS 55.0%
! ATGCCGATTGTTCCTGGGGA+AGG + chr1.3:66640485-66640504 MS.gene006008:CDS 55.0%
! CGTTGGTTGCACAATCCCCT+TGG - chr1.3:66640333-66640352 None:intergenic 55.0%
!! TGTGCATATTGTGGCGGGCT+TGG + chr1.3:66641490-66641509 MS.gene006008:CDS 55.0%
AGACCAAACGGACCTTCCCC+AGG - chr1.3:66640500-66640519 None:intergenic 60.0%
CCAGCTCAGCCAAAACAGGG+GGG - chr1.3:66641417-66641436 None:intergenic 60.0%
CCCTGCACCTGAATAGGCGT+TGG - chr1.3:66640350-66640369 None:intergenic 60.0%
CTGAGCCTTTGCCTACTGGG+TGG + chr1.3:66640153-66640172 MS.gene006008:CDS 60.0%
GGCTTCCACCCAGTAGGCAA+AGG - chr1.3:66640161-66640180 None:intergenic 60.0%
GTTCCTGGGGAAGGTCCGTT+TGG + chr1.3:66640494-66640513 MS.gene006008:CDS 60.0%
TGCAACTCCCGGGAGGTTGA+AGG + chr1.3:66640691-66640710 MS.gene006008:CDS 60.0%
AGCTTCCATGGCGCGACGCT+TGG - chr1.3:66639892-66639911 None:intergenic 65.0%
CAATGTGGGACGTGCAGGGG+CGG + chr1.3:66640925-66640944 MS.gene006008:CDS 65.0%
!!! CCCCCCTGTTTTGGCTGAGC+TGG + chr1.3:66641414-66641433 MS.gene006008:CDS 65.0%
ATGGCGCGACGCTTGGCCAC+AGG - chr1.3:66639885-66639904 None:intergenic 70.0%
TGGCGCGACGCTTGGCCACA+GGG - chr1.3:66639884-66639903 None:intergenic 70.0%
! TGTGGCCAAGCGTCGCGCCA+TGG + chr1.3:66639884-66639903 MS.gene006008:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 66639849 66641618 66639849 ID=MS.gene006008
chr1.3 mRNA 66639849 66641618 66639849 ID=MS.gene006008.t1;Parent=MS.gene006008
chr1.3 exon 66639849 66641618 66639849 ID=MS.gene006008.t1.exon1;Parent=MS.gene006008.t1
chr1.3 CDS 66639849 66641618 66639849 ID=cds.MS.gene006008.t1;Parent=MS.gene006008.t1
Gene Sequence

>MS.gene006008

ATGGAAGAAGAAGATGATTATGAGGAGTATATCCCTGTGGCCAAGCGTCGCGCCATGGAAGCTCAGAAGATTCTACAACGCAAAGGGAAAGCAACCGCTGCGATCGAAGAAGATGATTCCGAGAAACTGAAAGTCGTTGAAACTAAGCCAAGTCTACTTGTTAAGGCATCACAATTGAAGAAAGATCAGCCTGAAATCAGTGTCACAGAACAGATTGTTCAACAAGAGAAGGAGATGATTGAGAATTTGTCGGATAAGAAAACCCTTATGTCGGTTCGTGAATTAGCCAAAGGGATTACTTATACTGAGCCTTTGCCTACTGGGTGGAAGCCTCCTTTGCATATAAGAAGGATGTCGAAGAAGGATTGTGATTTGATTCAGAAACAGTGGCATATAATTGTTAATGGTGAAGAGATTCCGCCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCGATTTTGAAGATGTTGAAAACCAAGGGGATTGTGCAACCAACGCCTATTCAGGTGCAGGGTCTTCCAGTTATTTTATCTGGGAGGGATATGATTGGAATTGCTTTTACGGGTTCTGGTAAAACTTTGGTTTTTGTGCTTCCGATGATTATGATGGCAATGCAGGAGGAGATTATGATGCCGATTGTTCCTGGGGAAGGTCCGTTTGGTCTGATTATTTGTCCATCAAGGGAATTGGCTAGGCAAACTTATGAAGTCATTGAAGAATTTTTGTTACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATTGATATGAGATCACAGCTTGAGATTGTCAAGAAGGGTGTTCATATAGTTGTTGCAACTCCCGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGTAGGTATTTAACGTTAGATGAGGCTGATCGATTGGTCGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAAACTCTCCTATTTTCTGCTACTATGCCAACCAAAATTCAGAACTTCGCTAGAAGTGCTTTGGTAAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCGGCAAATCTTGATGTTATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATAGTTTACCTCCTCGAGTGCCTTCAAAAAACTCCACCCCCTGTTCTTATATTTTGTGAGAATAAGGCTGATGTTGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCATTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAAGGTTTAGATTTTCCTGATATTCAACATGTCATCAACTATGATATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGCAAAACTGGTATAGCAACAACATTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCTAAACAGAGGATCCCCCCTGTTTTGGCTGAGCTGGTTGATCCAATGGAAGATAATGAAGAAATCACAGGCATAAGTGGTGTCAAGGGCTGTGCATATTGTGGCGGGCTTGGTCATCGTATCCGTGATTGTCCTAAATTAGAACATCAGAAGAGTGTGGCCATTGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACCGAGGGGAAATTTGA
Protein sequence

>MS.gene006008.t1

MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIEEDDSEKLKVVETKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELVDPMEDNEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYFGSGGYRGEI