AlfalfaGEDB | MS.gene76218

M. sativa cultivar XinJiangDaYe / MS.gene76218

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76218.t1	KEH44326.1	98.2	169	3	0	1	169	1	169	3.00E-90	342.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76218.t1	O82178	62.0	158	60	0	12	169	30	187	3.8e-54	214.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76218.t1	A0A072VRN2	98.2	169	3	0	1	169	1	169	2.1e-90	342.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051171	MS.gene76218	0.813914	2.01E-51	-1.69E-46
MS.gene051242	MS.gene76218	0.827848	1.25E-54	-1.69E-46
MS.gene051244	MS.gene76218	0.846693	1.85E-59	-1.69E-46
MS.gene053330	MS.gene76218	0.829657	4.55E-55	-1.69E-46
MS.gene056305	MS.gene76218	0.80041	1.46E-48	-1.69E-46
MS.gene056351	MS.gene76218	0.805629	1.22E-49	-1.69E-46
MS.gene056633	MS.gene76218	0.86164	8.90E-64	-1.69E-46
MS.gene056664	MS.gene76218	0.836442	9.34E-57	-1.69E-46
MS.gene058746	MS.gene76218	0.855164	7.58E-62	-1.69E-46
MS.gene059512	MS.gene76218	0.819799	9.61E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000889	MS.gene76218	PPI
MS.gene006008	MS.gene76218	PPI
MS.gene011322	MS.gene76218	PPI
MS.gene033120	MS.gene76218	PPI
MS.gene033282	MS.gene76218	PPI
MS.gene035121	MS.gene76218	PPI
MS.gene040223	MS.gene76218	PPI
MS.gene040288	MS.gene76218	PPI
MS.gene041271	MS.gene76218	PPI
MS.gene044385	MS.gene76218	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76218.t1	MTR_1g112240	98.748	559	7	0	1	559	1	559	0.0	1144
MS.gene76218.t1	MTR_2g036560	28.256	453	290	2	131	548	337	789	2.96e-53	194
MS.gene76218.t1	MTR_2g036560	28.107	338	242	1	214	550	244	581	1.41e-40	157
MS.gene76218.t1	MTR_2g036560	25.000	456	318	7	103	544	165	610	2.38e-38	150
MS.gene76218.t1	MTR_2g036560	24.304	395	299	0	135	529	411	805	1.81e-37	148
MS.gene76218.t1	MTR_2g036560	25.189	397	282	5	87	473	435	826	1.69e-30	127
MS.gene76218.t1	MTR_2g036560	24.567	289	218	0	128	416	544	832	6.65e-29	122
MS.gene76218.t1	MTR_3g053350	25.708	459	338	2	92	550	270	725	4.13e-53	194
MS.gene76218.t1	MTR_3g053350	27.990	393	278	3	160	548	157	548	2.35e-46	174
MS.gene76218.t1	MTR_3g053350	26.471	374	274	1	176	548	210	583	7.27e-46	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76218.t1	AT2G35130	69.259	540	165	1	12	550	30	569	0.0	798
MS.gene76218.t1	AT2G35130	30.000	320	224	0	130	449	254	573	3.88e-43	162
MS.gene76218.t1	AT2G35130	23.656	279	212	1	274	551	152	430	3.59e-22	100
MS.gene76218.t1	AT2G35130	68.692	543	166	2	12	550	30	572	0.0	792
MS.gene76218.t1	AT2G35130	30.000	320	224	0	130	449	257	576	3.72e-43	162
MS.gene76218.t1	AT2G35130	23.404	282	212	2	274	551	152	433	1.51e-20	95.9
MS.gene76218.t1	AT2G35130	68.190	547	170	2	12	554	52	598	0.0	791
MS.gene76218.t1	AT3G22470	28.894	398	283	0	134	531	172	569	9.43e-54	192
MS.gene76218.t1	AT3G22470	27.052	329	236	2	133	459	276	602	2.79e-33	134
MS.gene76218.t1	AT3G22470	24.934	377	271	5	132	502	240	610	7.91e-31	127

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Find 107 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTGCTGCTCCATA+AGG	0.420693	1.1:+79309079	None:intergenic
AAATATTAGGTTTGCACTTT+TGG	0.200105	1.1:+79309366	None:intergenic
AAATTATAGCAGATTACATC+TGG	0.442262	1.1:+79310617	None:intergenic
AACAGCATGCTCAACTTGTA+TGG	0.432265	1.1:-79308649	MS.gene76218:CDS
AACTTCGGATGAGAAAACAA+TGG	0.651012	1.1:-79311825	MS.gene76218:CDS
AAGTGGATTCTGAGAGAATT+TGG	0.217527	1.1:-79311912	MS.gene76218:CDS
AATATCTTAATACATAGGTA+TGG	0.537166	1.1:-79308544	MS.gene76218:CDS
AATATCTTAGTAGATGCATA+TGG	0.402881	1.1:-79309010	MS.gene76218:CDS
AATTTACTCATAGATGCTTT+TGG	0.249934	1.1:-79310599	MS.gene76218:CDS
AATTTGTTCAGATATGTAAA+TGG	0.297305	1.1:-79310664	MS.gene76218:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGACCTTGACAACT+TGG	-	chr1.1:79310842-79310861	MS.gene76218:intron	30.0%
AACAAAAAATGTAGGCAAGT+TGG	+	chr1.1:79310961-79310980	None:intergenic	30.0%
ACAAAAAATGTAGGCAAGTT+GGG	+	chr1.1:79310960-79310979	None:intergenic	30.0%
ACAAAAGTTTCTATACAAGG+AGG	-	chr1.1:79310053-79310072	MS.gene76218:intron	30.0%
ACAAACTTATGTTGTGTTTC+AGG	+	chr1.1:79308411-79308430	None:intergenic	30.0%
ACAATAGGCCTTTATAAGAA+GGG	+	chr1.1:79310139-79310158	None:intergenic	30.0%
ACTGTCAAAGAATGAATTGA+TGG	+	chr1.1:79311130-79311149	None:intergenic	30.0%
AGCAGGATTTATTGAGAAAA+TGG	-	chr1.1:79312111-79312130	MS.gene76218:intron	30.0%
AGCGTTTACATTGATAAAAC+TGG	-	chr1.1:79308318-79308337	MS.gene76218:CDS	30.0%
AGGAAATTATATTGCTCAAC+CGG	+	chr1.1:79309323-79309342	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	79308252	79312399	79308252	ID=MS.gene76218
chr1.1	mRNA	79308252	79312399	79308252	ID=MS.gene76218.t1;Parent=MS.gene76218
chr1.1	exon	79312267	79312399	79312267	ID=MS.gene76218.t1.exon1;Parent=MS.gene76218.t1
chr1.1	CDS	79312267	79312399	79312267	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79311810	79312042	79311810	ID=MS.gene76218.t1.exon2;Parent=MS.gene76218.t1
chr1.1	CDS	79311810	79312042	79311810	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79310426	79310675	79310426	ID=MS.gene76218.t1.exon3;Parent=MS.gene76218.t1
chr1.1	CDS	79310426	79310675	79310426	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79309835	79309980	79309835	ID=MS.gene76218.t1.exon4;Parent=MS.gene76218.t1
chr1.1	CDS	79309835	79309980	79309835	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79309230	79309435	79309230	ID=MS.gene76218.t1.exon5;Parent=MS.gene76218.t1
chr1.1	CDS	79309230	79309435	79309230	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79308990	79309114	79308990	ID=MS.gene76218.t1.exon6;Parent=MS.gene76218.t1
chr1.1	CDS	79308990	79309114	79308990	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1
chr1.1	exon	79308252	79308838	79308252	ID=MS.gene76218.t1.exon7;Parent=MS.gene76218.t1
chr1.1	CDS	79308252	79308838	79308252	ID=cds.MS.gene76218.t1;Parent=MS.gene76218.t1

Gene Sequence

>MS.gene76218

ATGAATGAATCCGAATGGAAATCAAATGATTCAAGTGGCGTGGCTTTGAAGAAGTTCAAGAAAGACAGCGTTTACATTGATAAAACTGGCAACTTAAGGAACTTCAATCACAAGAAACTTTCCAGGAAAAAATGTAATCTATTCTATACTGTCTTACCTGAAACACAACATAAGTTTGTTCCCTTAAACATGTCTTTTTGTGTGTAAATGTTTCTTTAGACCATTTTAATGGTTTGAAATATCTACGGACTTTGCTTAAATGTGTTGTTATTTTCTCATAATCATGTTTTTTTTTTTCCGTCCACAAGGCTCGAACTTGAGACTTTGCTTAAACGTGTTGTTATTTTCTTTGAGTAGGTGGTTCTTTGAGAGGAAGAGGATGGAAGTTTGGTTCTGGATTTGTTGATGGGATTTTCCCAGTGTTGAGTCCCACTGCACTGAAGATTTTGGAGTGTCTTCAAAAGGAAGTGGATTCTGAGAGAATTTGGGGTTCACTGGATAAGCTTCCACCATCTCTTGATGCATGGGATGATGTTTTAACTGTGTCTGTTCAACTTCGGATGAGAAAACAATGGGATTCAATCATCTCGGTAAGAAACACATGCTGCTAGCCTCTGAAGCACGGGTATTCCGATTTGCAAAACGTACCCGTACCGGTACTCCGCGGGTACTGGTACTCGTATGGTACTCGTACTGTACGCACCCATGATGTGCCAATATTATTATTTTTTTGTTTTTAAACCTTGGTACAGTTACGGTACGGCAGTGGTACTCTCAAGGTACGCATAACCGTTTTTTCTTGAGAAAATGAGGTTTTTCATTTAAAATTAAATGTGAAGGAAAAGGATATAATGCAACCTGGAACGGCAACTATTGCAATATATCATACAAGGGTTCTTATTTTAGAATAAGATGTCATTTGCTTCAAGAAAAGAAAAAGGGATAGCTATTTGTCCAAAAGCGATGAATGAATATGTTGCTGAGATGAAAGAACTTGACAGAATTGCTAATGAAAAAGCAAATCCAGTACAAGTTCCTTTTCCTACTGGAACTGCAAGTTTGAATCCGCCGGTTGAGCAATATAATTTCCTCATGCTATGTTATCTTAAATTTTTTTTTTTTTTTTATCCTAACGTACCGTACCTTTGTTTTTTGAGAAATGTCGTATCCTGTACCCGCACCCGTACCCGTACCGGGTACTGTACCCGCACCCGTGTGCAACACAGCTGCTAGCTAGTGCTGCATACTAATCTTATACAACTTCACATTTTCAATTTATTTTTCAATGGATTGCCTTTTCAATGTATCACATACTTCCATTTTATTTTTCATTTTTAGCAATCTAAATATTTGAATAATGAATTCCCTTTTGCAATGTTTCACCATCGAATCCATCATGAACTTGTGATTCATGTGTTAGCATATACTTCACAGGACTTGGAATGTGACAATATTGGATATACATTTGAATCCTTAGGCAATAACAGTTACCTTTAGGTTTCGCTAGTCATAACAGGAAAGTAAAGAACAAATTGTGTTAGGTGTGACTCATAGGTTGCTGATAATCGTGTCATGTGTAAATTGGATGGTAGTATTTAAACACAAGTTGTAATTTGTAAATCCTAAGCTTGAATAATAGGAAGGCACTGTAGCGCGGTCGGAGACGTTGACACAATTGCCCGAACTCTGTGATCAATTTCTAACAAATTTAAAAATTTGTTCAGATATGTAAATGGATATTGCTAAGGAGCTCCTTCAAGCCAGATGTAATCTGCTATAATTTACTCATAGATGCTTTTGGACAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTGCAGCTTCATGAGGCTAGATGCATTCCTAATGAAGATACCTATGCCCTTCTTATAAAGGCCTATTGTATGTCTGGAAAGCTACAGAGTGCTGAAGCTGTCTTTGCAGAAATGCGAAATTACGGTCTTCCTTCCAGTATGTTCATGAATCAATATTGTTTTAATCAGTACTCCGGAGTTTACAACGTTCACACACTCTGCGCACCGACCACTTGCGTTAGACCCTGTTGGCTTGTGAATAAACTTGTTCATCCATCTATGTTGAAATAGAACTAGGATTAAAAATAGGGATTGACACAATGATGATTCTCGAAATCATGATTAGTTTAAAGCACAAAAGATATATCAACCACTATTATTTATAATGAGTAAGCTTTCATATTAACATATACTGCTCTAGTGAATAATAGTAAGCTTTCATATTCTCTAATCTAGGATCAGATCTACGATATTAACATAGGCATGTTTTCTAAGTCAATCTAGTGTATTTTCAGAAATACTTATATATAGGCATTTATTTGTGATAACTGGAAATTTGATTCTTTAAAACAACTAACTAATAATCAGAATGAATAATTCAGGTGCTGTTGTGTACAATGCTTACATAAATGGATTAATGAAAGGAGGAAACTTTGATAAAGCAGAAGAGATTTTTAAAAGGATGAAGAGGGATGGTTGCAAGCTATCTCCTGAAAGTTATACAATGTTGATTAACTTATACGGCAAGGTAATTTAACAGTTTTTTTCCGCCTAAAATAAGACCTTGACAACTTGGAAGGTAATTTTTTATGTAAGTTTGAATCGTGCTACCAATGTGATGAGTGATGACTGCATTGGGGGTTTCTCTACCGCGGCGAGCCTCCAGGACCCAACTTGCCTACATTTTTTGTTATATAATTTTGTACCATGGTGGAGTCAATGTCAAGAGCAATGACCTTTAAATTTAGGATAAATAATTTCTTAATTTATAAAGCATATACAGTATGTTGGATCCCACATGCATAGCACATAGGATTTGACTAGTCATAGAATAAATACCATCAATTCATTCTTTGACAGTGGAAAGTTTCACAGCACAGCACAGACACAATTATGTTAATGGAATTGAAATTTGAATTTTATGCAGGCCGGTAAATCCTATATGGCCTTAAAAGTGTTTGATGAAATGTTAAGCCAAAAGTGCAAACCTAATATTTGCACATATACTGCTCTAGTGAATGCATTTGCAAGAGAGGGATTATGTGAGAAAGCAGAAGAAATATTTGAGCAGATGCAAGAAGCTGGACTTGAACCAGATGTATATGCTTATAATGCCCTTATGGAAGCTTACAGGTTGTTATATACGACTGTATAAATGTCTTCTTCATTGATTAATGTATTATCCCTTTGATCTATTGGTTTATATATCTAGAGAAAAAATAAATCATAATTTCTCTTCCCGAAACAGTCGTGCAGGCTTTCCTTATGGAGCAGCAGAAATTTTTTCACTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCTTATAATATCTTAGTAGATGCATATGGGAAAGCAGGTTTTCAAGATGGTAATGATTCTCATTTAGTTTTGTTTATTCACACAATCCTAATGCTTGGTCCAACAAATTTTAATCATTTTATTACTTTTTCTTTACTTGTTTACCTACGTGATTGGTCTAACACATGTTTTTATTTCTTTTCCTTTTGAATGAAACAAAGATGCTGAAGCTGTTTTTGAAAATATGAAAAGAGTTGGAATAACACCAACAATGAAATCCCACATGGTACTTTTGTCTGCCTATTCCAAAATGGGAAATGTGACTAAATGTGAAGACATTCTTAACCAAATGTGTAAATCAGGCCTAAAACTAGACACTTTTGTTCTCAACAGCATGCTCAACTTGTATGGAAGGTTAGGCCAATTTGGAAAAATGGAAGAAGTTTTAACAGTGATGGAAAAAGGATCATATGTAGTTGATATTAGTACATCTAATATCTTAATACATAGGTATGGACAAGCAGGATTTATTGAGAAAATGGAAGAACAATTTCAATTACTTCTTCCCAAAGGTTTAAAACCTGATGTGGTTACTTGGACAAGTCGTATTGGAGCTTACTCTAAAAAAAAGCTTTACCTAAAGTGCTTAGAAATATTTGAAGAAATGATTGATGCTGGTTGTTATCCAGATGGAGGAACAGCTAAGGTACTTCTAGCAGCATGTTCTAATGAAGATCAGATTGAGCAGGTTACAAGTGTGATTAGAACTATGCACAAGGATATGAACACTGTTTTGCCAGTAGCATAA

Protein sequence

>MS.gene76218.t1

MNESEWKSNDSSGVALKKFKKDSVYIDKTGNLRNFNHKKLSRKKCGSLRGRGWKFGSGFVDGIFPVLSPTALKILECLQKEVDSERIWGSLDKLPPSLDAWDDVLTVSVQLRMRKQWDSIISICKWILLRSSFKPDVICYNLLIDAFGQKFLYKEAESTYLQLHEARCIPNEDTYALLIKAYCMSGKLQSAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNFDKAEEIFKRMKRDGCKLSPESYTMLINLYGKAGKSYMALKVFDEMLSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQMQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFENMKRVGITPTMKSHMVLLSAYSKMGNVTKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMEKGSYVVDISTSNILIHRYGQAGFIEKMEEQFQLLLPKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDAGCYPDGGTAKVLLAACSNEDQIEQVTSVIRTMHKDMNTVLPVA