AlfalfaGEDB | MS.gene029315

M. sativa cultivar XinJiangDaYe / MS.gene029315

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029315.t1	XP_013470288.2	98.4	190	2	1	1	190	1	189	4.10E-103	385.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029315.t1	O82178	56.7	180	78	0	11	190	8	187	1.0e-54	216.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029315.t1	A0A1S2Y183	92.1	190	13	1	1	190	1	188	6.5e-98	367.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000889	MS.gene029315	PPI
MS.gene006008	MS.gene029315	PPI
MS.gene011322	MS.gene029315	PPI
MS.gene029315	MS.gene060422	PPI
MS.gene029315	MS.gene71545	PPI
MS.gene029315	MS.gene58428	PPI
MS.gene029315	MS.gene033120	PPI
MS.gene029315	MS.gene34002	PPI
MS.gene029315	MS.gene54756	PPI
MS.gene033282	MS.gene029315	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029315.t1	MTR_1g112240	98.390	559	9	0	22	580	1	559	0.0	1141
MS.gene029315.t1	MTR_2g036560	28.035	453	291	2	152	569	337	789	1.73e-52	192
MS.gene029315.t1	MTR_2g036560	27.928	333	239	1	240	571	249	581	1.69e-39	154
MS.gene029315.t1	MTR_2g036560	25.000	456	318	7	124	565	165	610	2.57e-38	151
MS.gene029315.t1	MTR_2g036560	24.685	397	284	5	108	494	435	826	1.95e-29	124
MS.gene029315.t1	MTR_2g036560	24.567	289	218	0	149	437	544	832	5.71e-29	122
MS.gene029315.t1	MTR_3g053350	25.331	529	322	4	113	571	270	795	2.09e-52	192
MS.gene029315.t1	MTR_3g053350	27.005	374	272	1	197	569	210	583	3.54e-47	177
MS.gene029315.t1	MTR_3g053350	23.975	488	301	2	152	569	341	828	1.78e-45	172
MS.gene029315.t1	MTR_3g053350	24.612	451	325	3	124	565	170	614	1.00e-38	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene029315.t1	AT2G35130	67.082	562	184	1	11	571	8	569	0.0	798
MS.gene029315.t1	AT2G35130	30.000	320	224	0	151	470	254	573	4.88e-43	163
MS.gene029315.t1	AT2G35130	24.014	279	211	1	295	572	152	430	1.81e-22	102
MS.gene029315.t1	AT2G35130	66.549	565	185	2	11	571	8	572	0.0	792
MS.gene029315.t1	AT2G35130	30.000	320	224	0	151	470	257	576	4.97e-43	163
MS.gene029315.t1	AT2G35130	66.549	565	185	2	11	571	30	594	0.0	791
MS.gene029315.t1	AT2G35130	30.000	320	224	0	151	470	279	598	6.64e-43	162
MS.gene029315.t1	AT2G35130	23.759	282	211	2	295	572	174	455	6.68e-21	97.1
MS.gene029315.t1	AT3G22470	28.141	398	286	0	155	552	172	569	1.04e-51	187
MS.gene029315.t1	AT3G22470	26.444	329	238	2	154	480	276	602	2.58e-32	132

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Find 111 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTGCTGCTCCATA+AGG	0.424344	1.4:+86219178	None:intergenic
AAATATTAGGTTTGCACTTT+TGG	0.200105	1.4:+86219465	None:intergenic
AAATTATAGCAGATTACATC+TGG	0.442262	1.4:+86220998	None:intergenic
AACTTCGGATGAGAAAACAA+TGG	0.651012	1.4:-86221584	MS.gene029315:CDS
AAGACCGTAATTTCGCATTT+CGG	0.364195	1.4:+86220814	None:intergenic
AAGTGGATTCTGAGAGAATT+TGG	0.217527	1.4:-86221671	MS.gene029315:CDS
AATAGCATGCTCAACTTGTA+TGG	0.406366	1.4:-86218734	MS.gene029315:CDS
AATATCTTAATACATAGGTA+TGG	0.537166	1.4:-86218629	MS.gene029315:CDS
AATATCTTAGTAGATGCATA+TGG	0.402881	1.4:-86219109	MS.gene029315:CDS
AATTTACTCATAGATGCTTT+TGG	0.249934	1.4:-86220980	MS.gene029315:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAAAATGTAGGCAAGT+TGG	+	chr1.4:86220940-86220959	None:intergenic	30.0%
ACAAAAAATGTAGGCAAGTT+GGG	+	chr1.4:86220939-86220958	None:intergenic	30.0%
ACAAAAGTTTCTATACAAGG+AGG	-	chr1.4:86219745-86219764	MS.gene029315:intron	30.0%
ACAAACTTATGTTGTGTTTC+AGG	+	chr1.4:86218723-86218742	None:intergenic	30.0%
ACTGTCAAAGAATGAATTGA+TGG	+	chr1.4:86221109-86221128	None:intergenic	30.0%
AGCAGGATTTATTGAGAAAA+TGG	-	chr1.4:86222099-86222118	MS.gene029315:CDS	30.0%
AGCGTTTACATTGATAAAAC+TGG	-	chr1.4:86218630-86218649	MS.gene029315:CDS	30.0%
ATATGCTTATAATGCCCTTA+TGG	-	chr1.4:86221363-86221382	MS.gene029315:intron	30.0%
ATATTATAAGAGGCTCTATC+TGG	+	chr1.4:86221578-86221597	None:intergenic	30.0%
ATCAATTCATTCTTTGACAG+TGG	-	chr1.4:86221108-86221127	MS.gene029315:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	86218337	86222387	86218337	ID=MS.gene029315
chr1.4	mRNA	86218337	86222387	86218337	ID=MS.gene029315.t1;Parent=MS.gene029315
chr1.4	exon	86222383	86222387	86222383	ID=MS.gene029315.t1.exon1;Parent=MS.gene029315.t1
chr1.4	CDS	86222383	86222387	86222383	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86222028	86222218	86222028	ID=MS.gene029315.t1.exon2;Parent=MS.gene029315.t1
chr1.4	CDS	86222028	86222218	86222028	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86221569	86221801	86221569	ID=MS.gene029315.t1.exon3;Parent=MS.gene029315.t1
chr1.4	CDS	86221569	86221801	86221569	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86220807	86221056	86220807	ID=MS.gene029315.t1.exon4;Parent=MS.gene029315.t1
chr1.4	CDS	86220807	86221056	86220807	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86220241	86220386	86220241	ID=MS.gene029315.t1.exon5;Parent=MS.gene029315.t1
chr1.4	CDS	86220241	86220386	86220241	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86219329	86219534	86219329	ID=MS.gene029315.t1.exon6;Parent=MS.gene029315.t1
chr1.4	CDS	86219329	86219534	86219329	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86219089	86219213	86219089	ID=MS.gene029315.t1.exon7;Parent=MS.gene029315.t1
chr1.4	CDS	86219089	86219213	86219089	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1
chr1.4	exon	86218337	86218923	86218337	ID=MS.gene029315.t1.exon8;Parent=MS.gene029315.t1
chr1.4	CDS	86218337	86218923	86218337	ID=cds.MS.gene029315.t1;Parent=MS.gene029315.t1

Gene Sequence

>MS.gene029315

ATGATGTAAGCTCTACTCCACCTCATTTAATTCAATCTCATTCATGTTTATACATATAGTGTTCTGTTACATAGGATAGGATATTATTATTAAGAAGGGTCATTTTGTTACTTTGATTAATTGGAGTGGCATTATAATCAAGGTGATCAATTCTTGATGATATCTACAGGTTAAATTCTAGTAGTATATGCAGATTGAACCACACATTTATTGAACCAAGATGTTGCATGAATGAATCCGAATGGAAATCAAATGATTCAAGTGGCGTGGCTTTGAAGAAGTTCAAGAAAGACAGCGTTTACATTGATAAAACTGGCAACTTAAGGAACTTCAATCACAAGAAACTTTCCAGGAAAAAATGTAATCTATTCTATACTGTCTTACCTGAAACACAACATAAGTTTGTTCCCTTAAACATGTCTTTTTGTGTGTTAATGTTTCTTTAGACCATTTTAATGGTTTGAAATATCTACGGACTTTGCTTAAATGTGTTGTTATTTTCTCATAATCATGTTTTTTTTTTTTTCCGTCCACAAGGCTCGAACTTGAGACTTTGCTTAAACGTGTTGTTATTTTCTTTGAGTAGGTGGTTCTTTGAGAGGAAGAGGATGGAAGTTTGGTTCTGGATTTGTTGATGGGATTTTCCCAGTGTTGAGTCCCACTGCACTGAAGATTTTGGAGTATCTTCAAAAGGAAGTGGATTCTGAGAGAATTTGGGGTTCACTGGATAAGCTTCCACCATCTCTTGATGCATGGGATGATGTTTTAACTGTGTCTGTTCAACTTCGGATGAGAAAACAATGGGATTCAATCATCTCGGTAAGAAACACATGCTGCTAGCTAGTGCTGCATACTAATCTTATACAACTTCACATTTTCAATTTATTTTTCAATGGATTGCCTTTTCAATGTATCACATACTTCCATTTTATTTTTCATTTTTAGCAATCTAAATATTTGAATAATGAATTCCCTTTTGCAATGTTTCACCATCGAATCCATCGTGAACTTGTGATTCATGTGTTAGCATATACTTCACAGGACTTGGAATGTGACAATATTGGATATACATTTGAATCCTTAGGCAATAACAGTTACCTTTAGGTTTCGCTAGTCATAACAGGAAAGTAAAGAACAAATTGTGTTAGGTGTGACTCATAGGTTGCTGATAATCGTGTCATGTGTAAATTGGATGGTAGTATTTAAACACAAGTTGTAATTTGTAAATCCTAAGCTTGAATAATAGGAAGGCACTGTAGCGCGGTCGGAGACGTTGACACAATTGCCCGAACTCTGTGATCAATTTCTAACAAATTTAAAAATTTGTTCAGATATGTAAATGGATATTGCTAAGGAGCTCCTTCAAGCCAGATGTAATCTGCTATAATTTACTCATAGATGCTTTTGGACAAAAGTTTCTATACAAGGAGGCAGAATCCACATATCTGCAGCTTCATGAGGCTAGATGCATTCCTAATGAAGATACCTATGCCCTTCTTATAAAGGCCTACTGTATGTCTGGAAAGCTGCAGAGTGCTGAAGCTGTCTTTGCCGAAATGCGAAATTACGGTCTTCCTTCCAGTATGTTCACGAGTCAATTTTGTTTTAATCAGTACTCCGGAGTTTACAACGTTCACATATACTATGCGCACCAACCACTTGTGTTAGACCCTGTTGGCTCGTGAATAAACTTGTTCATCCATATATGTTGAAATAGAACTAGGATAAAAAATGGGGATTGACACAATGATGATTCTCGAAATCATGATTAGTTTAAAGCACAAAAGATATATCAACCACTGTTATTTATAATGAGTAAGCTTTCATATCAGTATTCTCTAATCTAGGATCCTAGGATCAGATCTACGATATTAACATAGGCATGTTTTCTAAGTCAATCTAGTGTATTTTCAGAACTACTTATATATGTGCATTTATTTGTGATAACTGGATATTTGATTCTTTAAAACAACTAACTAATAATCAGAATGAATAATTCAGGCGCTGTTGTGTACAATGCTTACATAAGTGGATTAATGAAAGGAGGAAACTTTAATAAAGCAGAAGAGATTTTTAAAAGGATGAAGAGGGATGGTTGCAAGCTATCTCCTGAAAGTTATACAATGTTGATTAACTTATACGGCAAGGTAAGCTTTTAACAGTTTTTTTCCGCCTAAAATAAGACCTCGACAACTTGGAAGGTAATTTTTTATGTATGTCCTAAAATGCTAGGACCCGTTATTAGAGAGCCAACATGATACAGGATGAATTAATTGACATTAAGAAAACCTAAGATCAAAGTAGTATTGTTTGATTTAGGTCTAACTCATCATTACAAAACCAACTTGTGAAGTGAGAGATGTTTATCTCTTATCAACGTGAAACTTGTGTTTTTCCCAATACTTGATAATGATGTTAGTCGGTTGGAGTTTGTGTATATTTGCTCTTCTTTTCATTTAAGTTGTGGTCGTAGCAAAGGTGATCTAAGTTGGTCTAGTCAGTAAAGATTCAACTCAAGTCCCACTAGACCTAAGTTTGAATCCTGCCACCAATGTGATGATTGCATTGGGGGTTTCTCTGCCCCGGCGAGCCTCCAGGACCCAACTTGCCTACATTTTTTGTTATATAATTCAGTACCATGGTGGAGTCAATGTCAAGAGCAATGACCTTTAAATTTAGGATAAATAATTTCTTAATTTATAAAGCATATACAGTATGTTGGATCCCACATGCATAGCACATAGGATTTGACTAGTCATAGAATAAATACCATCAATTCATTCTTTGACAGTGGAAAGTTTCACAGCACAGACACAATTATGTTAATGGAATTAAAATTTGAATTTTATGCAGGCTGGTAAATCCTATATGGCCTTAAAAGTGTTTGATGACATGTTAAGCCAAAAGTGCAAACCTAATATTTGCACATATACTGCTCTAGTGAATGCATTTGCAAGAGAGGGATTATGTGAGAAAGCAGAAGAAATATTTGAGCAGATGCAAGAAGCTGGACTTGAACCAGATGTATATGCTTATAATGCCCTTATGGAAGCTTACAGGTTGTTATATACGACTGTATAAATGTCTTCTTCATTGATTAATGTATTATCCCTTTGATCTATCGGTTTATATATCTAGAGAAAAAATAAATCATAATTTCTCTTCCCGAAACAGTCGTGCAGGCTTTCCTTATGGAGCAGCAGAAATTTTCTCACTAATGCAGCACATGGGATGTGAACCAGATAGAGCCTCTTATAATATCTTAGTAGATGCATATGGGAAAGCAGGTTTTCAGGAAGGTAATGATCTTCCCTGTAAAATTCTCATTTAGTTTTGTTTATTCACATAATCCTAATGCTTGGTCCAACAAATTTTAATCATTTTATTACTTTTTCTTCACTTGTTTACCTATGTGATTGGTCTAACACATGTTTTTATTTCTTTTCCTTTTGAATGAAACAAAGATGCTGAAGCTGTTTTTGAAAATATGAAAAGAGTTGGAATAACACCAACAATGAAATCCCACATGGTACTTTTGTCTGCCTATTCCAAAATGGGAAATGTGACTAAATGTGAAGACATTCTTAACCAAATGTGTAAATCTGGCCTAAAACTAGACACTTTTGTTCTCAATAGCATGCTCAACTTGTATGGAAGGTTAGGCCAATTTGGAAAAATGGAAGAAGTTTTAACAGTGATGGAAAAAGGATCATATGTAGTTGATATTAGTACATCTAATATCTTAATACATAGGTATGGACAAGCAGGATTTATTGAGAAAATGGAAGAACAATTTCAATTACTTCTTCCCAAAGGTTTAAAACCTGATGTGGTTACTTGGACAAGTCGTATTGGAGCTTACTCTAAAAAAAAGCTTTACCTAAAGTGCTTAGAAATATTTGAAGAAATGATTGATGCTGGTTGTTATCCAGATGGAGGAACAGCTAAGGTACTTCTAGCAGCATGTTCTAATGAAGATCAGATTGAACAGGTTACAAGTGTGATTAGAACTATGCACAAGGATATGAAGACTGTTTTGCCAGTAGCATAA

Protein sequence

>MS.gene029315.t1

MMLNSSSICRLNHTFIEPRCCMNESEWKSNDSSGVALKKFKKDSVYIDKTGNLRNFNHKKLSRKKCGSLRGRGWKFGSGFVDGIFPVLSPTALKILEYLQKEVDSERIWGSLDKLPPSLDAWDDVLTVSVQLRMRKQWDSIISICKWILLRSSFKPDVICYNLLIDAFGQKFLYKEAESTYLQLHEARCIPNEDTYALLIKAYCMSGKLQSAEAVFAEMRNYGLPSSAVVYNAYISGLMKGGNFNKAEEIFKRMKRDGCKLSPESYTMLINLYGKAGKSYMALKVFDDMLSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQMQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQEDAEAVFENMKRVGITPTMKSHMVLLSAYSKMGNVTKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMEKGSYVVDISTSNILIHRYGQAGFIEKMEEQFQLLLPKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDAGCYPDGGTAKVLLAACSNEDQIEQVTSVIRTMHKDMKTVLPVA