Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006020.t1 | XP_003591999.1 | 100 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1152.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006020.t1 | Q67XD9 | 83.7 | 558 | 85 | 4 | 2 | 555 | 3 | 558 | 1.4e-282 | 973.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006020.t1 | G7IAG4 | 100.0 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1152.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006020 | MS.gene97437 | PPI |
| MS.gene006020 | MS.gene041734 | PPI |
| MS.gene006020 | MS.gene33980 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006020.t1 | MTR_1g096140 | 100.000 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
| MS.gene006020.t1 | MTR_1g095970 | 86.126 | 555 | 57 | 2 | 1 | 555 | 19 | 553 | 0.0 | 978 |
| MS.gene006020.t1 | MTR_3g117710 | 73.369 | 567 | 132 | 6 | 2 | 554 | 12 | 573 | 0.0 | 874 |
| MS.gene006020.t1 | MTR_4g075540 | 69.866 | 448 | 129 | 4 | 47 | 493 | 9 | 451 | 0.0 | 656 |
| MS.gene006020.t1 | MTR_8g092170 | 58.952 | 458 | 182 | 2 | 91 | 543 | 165 | 621 | 0.0 | 586 |
| MS.gene006020.t1 | MTR_7g111890 | 59.062 | 469 | 186 | 4 | 79 | 543 | 116 | 582 | 0.0 | 577 |
| MS.gene006020.t1 | MTR_1g084610 | 59.823 | 453 | 176 | 3 | 92 | 540 | 114 | 564 | 0.0 | 575 |
| MS.gene006020.t1 | MTR_4g123030 | 53.714 | 525 | 226 | 6 | 34 | 543 | 118 | 640 | 0.0 | 572 |
| MS.gene006020.t1 | MTR_4g123030 | 59.945 | 362 | 137 | 3 | 91 | 446 | 184 | 543 | 7.41e-154 | 451 |
| MS.gene006020.t1 | MTR_3g015100 | 57.792 | 154 | 63 | 1 | 293 | 446 | 2 | 153 | 6.31e-62 | 201 |
| MS.gene006020.t1 | MTR_3g025460 | 64.286 | 70 | 25 | 0 | 129 | 198 | 91 | 160 | 2.69e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006020.t1 | AT4G09510 | 83.692 | 558 | 85 | 4 | 2 | 555 | 3 | 558 | 0.0 | 973 |
| MS.gene006020.t1 | AT1G35580 | 82.852 | 554 | 88 | 4 | 1 | 553 | 1 | 548 | 0.0 | 962 |
| MS.gene006020.t1 | AT1G35580 | 82.852 | 554 | 88 | 4 | 1 | 553 | 1 | 548 | 0.0 | 962 |
| MS.gene006020.t1 | AT1G22650 | 82.936 | 545 | 79 | 5 | 10 | 554 | 4 | 534 | 0.0 | 945 |
| MS.gene006020.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
| MS.gene006020.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
| MS.gene006020.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
| MS.gene006020.t1 | AT1G72000 | 82.329 | 498 | 86 | 2 | 58 | 554 | 3 | 499 | 0.0 | 874 |
| MS.gene006020.t1 | AT4G09510 | 82.391 | 460 | 75 | 4 | 2 | 457 | 3 | 460 | 0.0 | 790 |
| MS.gene006020.t1 | AT1G35580 | 81.562 | 461 | 78 | 4 | 1 | 460 | 1 | 455 | 0.0 | 787 |
| MS.gene006020.t1 | AT1G22650 | 81.473 | 448 | 69 | 5 | 10 | 457 | 4 | 437 | 0.0 | 764 |
| MS.gene006020.t1 | AT5G22510 | 59.477 | 459 | 180 | 2 | 91 | 544 | 134 | 591 | 0.0 | 587 |
| MS.gene006020.t1 | AT5G22510 | 59.477 | 459 | 180 | 2 | 91 | 544 | 134 | 591 | 0.0 | 587 |
| MS.gene006020.t1 | AT1G56560 | 58.114 | 456 | 187 | 2 | 91 | 543 | 134 | 588 | 0.0 | 576 |
| MS.gene006020.t1 | AT3G06500 | 59.041 | 459 | 180 | 3 | 91 | 543 | 182 | 638 | 0.0 | 566 |
| MS.gene006020.t1 | AT3G05820 | 56.987 | 458 | 191 | 3 | 91 | 543 | 150 | 606 | 0.0 | 557 |
| MS.gene006020.t1 | AT3G06500 | 58.376 | 394 | 156 | 3 | 156 | 543 | 48 | 439 | 2.54e-166 | 481 |
| MS.gene006020.t1 | AT3G05820 | 57.341 | 361 | 148 | 3 | 91 | 446 | 150 | 509 | 2.43e-147 | 434 |
Find 134 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCTTGCAGGGTGTTTA+TGG | 0.100926 | 1.3:-66767656 | MS.gene006020:intron |
| GATACTCTTATTGCAGATTT+TGG | 0.135753 | 1.3:-66768520 | MS.gene006020:CDS |
| CTCCTGTTGACTCTGGATTC+TGG | 0.209312 | 1.3:-66768474 | MS.gene006020:CDS |
| TGATTAAAAGATCATCTTCT+TGG | 0.264825 | 1.3:-66766467 | MS.gene006020:CDS |
| ATGGTCTATTGCGGGTTATT+TGG | 0.279758 | 1.3:-66766565 | MS.gene006020:CDS |
| AGCAACTAAATGACATTTAT+CGG | 0.283643 | 1.3:-66767472 | MS.gene006020:CDS |
| TGGATGGGCATATGGGAATT+AGG | 0.284454 | 1.3:-66770292 | MS.gene006020:CDS |
| CACTCGTGACTTTCTATTGC+AGG | 0.287232 | 1.3:+66767173 | None:intergenic |
| TGGTTCACCATTCATCAAAA+AGG | 0.293514 | 1.3:+66768675 | None:intergenic |
| CACGAGTGGCGAATTGTTAC+TGG | 0.296374 | 1.3:-66767158 | MS.gene006020:CDS |
| GTTAAAGACACTACATCTTC+AGG | 0.309497 | 1.3:-66768632 | MS.gene006020:CDS |
| TTCACATGAGAAGCTACTTT+TGG | 0.315196 | 1.3:-66767505 | MS.gene006020:CDS |
| ATCCAATGGTTGCCGATGCC+TGG | 0.318785 | 1.3:-66770037 | MS.gene006020:CDS |
| AGTTTACCATCGTAATATTC+AGG | 0.320203 | 1.3:+66766627 | None:intergenic |
| CCAACTCTGCTTTGTGCTGA+TGG | 0.324554 | 1.3:-66768325 | MS.gene006020:CDS |
| TCATCTGCTTGTCTTCTTCA+AGG | 0.335576 | 1.3:+66766496 | None:intergenic |
| ATCTCACTCGTTTGCTTGAC+AGG | 0.343739 | 1.3:-66770226 | MS.gene006020:CDS |
| GGAGAGAATGGATGGGCATA+TGG | 0.343886 | 1.3:-66770300 | None:intergenic |
| AAATAAGTTTAATGTTATTC+CGG | 0.344511 | 1.3:-66767417 | MS.gene006020:CDS |
| CTGGCCAAGATCCTCCATTA+TGG | 0.347238 | 1.3:+66767105 | None:intergenic |
| ACACGTGGTGGCTACTTCAT+TGG | 0.356280 | 1.3:-66767359 | MS.gene006020:CDS |
| CAACAGGTGCACCTCTAAAA+TGG | 0.356755 | 1.3:+66769991 | None:intergenic |
| GATAAATGTCATTTAGTTGC+TGG | 0.364423 | 1.3:+66767474 | None:intergenic |
| TGGAAGATATGTTGGGAAAC+AGG | 0.366576 | 1.3:-66766604 | MS.gene006020:CDS |
| GAATCTGATAGTTGTCAAAA+AGG | 0.369286 | 1.3:-66768397 | MS.gene006020:CDS |
| ATTGCACGTCTTGCTATTTG+TGG | 0.381527 | 1.3:+66766687 | None:intergenic |
| TACTCGCCTGGAGGAAGATC+TGG | 0.392572 | 1.3:-66770104 | MS.gene006020:CDS |
| AAAAGTGCTTGAATCTCAAT+AGG | 0.404944 | 1.3:+66767629 | None:intergenic |
| AACCCGCAATAGACCATGTT+TGG | 0.407039 | 1.3:+66766571 | None:intergenic |
| GGTAAACTTGGAAGATATGT+TGG | 0.414179 | 1.3:-66766612 | MS.gene006020:CDS |
| TACCAAACATGGTCTATTGC+GGG | 0.414605 | 1.3:-66766573 | MS.gene006020:CDS |
| TCCGGATTCAATTCCAGAAT+GGG | 0.421691 | 1.3:-66767399 | MS.gene006020:CDS |
| GGATCTTATTGAAGCTCGTT+GGG | 0.432163 | 1.3:-66767234 | MS.gene006020:CDS |
| GAATATTACGATGGTAAACT+TGG | 0.442361 | 1.3:-66766624 | MS.gene006020:CDS |
| GAGTAGATAGGTTTAAACTT+GGG | 0.443964 | 1.3:-66768597 | MS.gene006020:CDS |
| TCCATTATGGTAACTCCATC+TGG | 0.444012 | 1.3:+66767118 | None:intergenic |
| AGAGCAGTCAATGGCAATCA+TGG | 0.446518 | 1.3:-66767255 | MS.gene006020:CDS |
| ATGATTGCCATTGACTGCTC+TGG | 0.446728 | 1.3:+66767257 | None:intergenic |
| CATCTGCTTGTCTTCTTCAA+GGG | 0.447224 | 1.3:+66766497 | None:intergenic |
| CTGGAGGACCCCTCACACTT+GGG | 0.450103 | 1.3:-66766528 | MS.gene006020:CDS |
| ATAAAGTCAAACACCCATTC+TGG | 0.451613 | 1.3:+66767386 | None:intergenic |
| GTCTATTGCGGGTTATTTGG+TGG | 0.452343 | 1.3:-66766562 | MS.gene006020:CDS |
| CGTGCTTACACAAAATCTAC+AGG | 0.455584 | 1.3:-66768436 | MS.gene006020:CDS |
| TCCCTTAGTGAATTGTCTGT+TGG | 0.467466 | 1.3:-66770161 | MS.gene006020:CDS |
| AGAGTTGCTCCTGTTGACTC+TGG | 0.469270 | 1.3:-66768481 | MS.gene006020:CDS |
| ACCAGATGGAGTTACCATAA+TGG | 0.469371 | 1.3:-66767119 | MS.gene006020:CDS |
| AGATTTCCTGAGAGATTCCC+AGG | 0.470532 | 1.3:+66770019 | None:intergenic |
| AGAGTAGATAGGTTTAAACT+TGG | 0.471746 | 1.3:-66768598 | MS.gene006020:CDS |
| GGTGGGAGAAAAGAGTAGAT+AGG | 0.473013 | 1.3:-66768609 | MS.gene006020:CDS |
| CACCAGAATCCAGAGTCAAC+AGG | 0.475876 | 1.3:+66768472 | None:intergenic |
| CCGATGCCTGGGAATCTCTC+AGG | 0.478959 | 1.3:-66770025 | MS.gene006020:CDS |
| TCTCGGGTGCAGTGCTCCTA+TGG | 0.481775 | 1.3:-66766743 | MS.gene006020:intron |
| AAGTCCTTCATGATGCCGTT+AGG | 0.485437 | 1.3:-66768549 | MS.gene006020:CDS |
| TTCCGGATTCAATTCCAGAA+TGG | 0.486144 | 1.3:-66767400 | MS.gene006020:CDS |
| AACTATGACAATTACTCGCC+TGG | 0.487484 | 1.3:-66770116 | MS.gene006020:CDS |
| TGGATCTTATTGAAGCTCGT+TGG | 0.487509 | 1.3:-66767235 | MS.gene006020:CDS |
| ACCCATTCTGGAATTGAATC+CGG | 0.488781 | 1.3:+66767398 | None:intergenic |
| TTAAAGACACTACATCTTCA+GGG | 0.492030 | 1.3:-66768631 | MS.gene006020:CDS |
| ACAGCTGCTTGCATCAAGAC+AGG | 0.494728 | 1.3:-66766714 | MS.gene006020:CDS |
| ACAGCTGCAATTGTGCCAAC+AGG | 0.495160 | 1.3:+66769975 | None:intergenic |
| TCCCAGGCATCGGCAACCAT+TGG | 0.497056 | 1.3:+66770035 | None:intergenic |
| CCATCAGCACAAAGCAGAGT+TGG | 0.497910 | 1.3:+66768325 | None:intergenic |
| GAGAGAATGGATGGGCATAT+GGG | 0.498231 | 1.3:-66770299 | None:intergenic |
| GCTGGAGGACCCCTCACACT+TGG | 0.498361 | 1.3:-66766529 | MS.gene006020:CDS |
| AGTAGATAGGTTTAAACTTG+GGG | 0.499014 | 1.3:-66768596 | MS.gene006020:CDS |
| TTGACTTTATGCTTGTCAGA+GGG | 0.502470 | 1.3:-66768361 | MS.gene006020:CDS |
| TCCAATGGTTGCCGATGCCT+GGG | 0.503195 | 1.3:-66770036 | MS.gene006020:CDS |
| GTAAACTTGGAAGATATGTT+GGG | 0.505556 | 1.3:-66766611 | MS.gene006020:CDS |
| CTCGTTTGCTTGACAGGCCG+AGG | 0.505998 | 1.3:-66770220 | MS.gene006020:CDS |
| GGAGAATTGGAGAGAATGGA+TGG | 0.508246 | 1.3:-66770308 | None:intergenic |
| GGGGTCCTCCAGCATCATCT+TGG | 0.509985 | 1.3:+66766539 | None:intergenic |
| TCAGTGTTCGATGGCTGAGA+TGG | 0.510749 | 1.3:-66770258 | MS.gene006020:CDS |
| GTTACCATAATGGAGGATCT+TGG | 0.514487 | 1.3:-66767109 | MS.gene006020:CDS |
| ATCCTTCAGTAAACGACTCT+CGG | 0.516742 | 1.3:+66766656 | None:intergenic |
| CTCGTTTGAGCCGCATCCAA+TGG | 0.519347 | 1.3:-66770051 | MS.gene006020:CDS |
| TGAAGGACTTTGAAACTAGC+TGG | 0.526537 | 1.3:+66768562 | None:intergenic |
| CATAATGGAGGATCTTGGCC+AGG | 0.526915 | 1.3:-66767104 | MS.gene006020:intron |
| TTAAAACCAGATCTTCCTCC+AGG | 0.527021 | 1.3:+66770098 | None:intergenic |
| GGAGGTTCTAAATTACGATC+AGG | 0.528119 | 1.3:-66769937 | MS.gene006020:intron |
| AAATGTCAGTCCCGCTCGAA+TGG | 0.529170 | 1.3:-66767336 | MS.gene006020:CDS |
| AGCAGTATCTTGCTTGAGCA+TGG | 0.533846 | 1.3:+66767580 | None:intergenic |
| TGAAGCTCGTTGGGATGAGT+TGG | 0.534616 | 1.3:-66767225 | MS.gene006020:CDS |
| CCTGAGAGATTCCCAGGCAT+CGG | 0.535290 | 1.3:+66770025 | None:intergenic |
| GAGTTGCGAGCAGATGAAGC+AGG | 0.538724 | 1.3:+66770071 | None:intergenic |
| TTTGGTGGCCAAGATGATGC+TGG | 0.539521 | 1.3:-66766547 | MS.gene006020:CDS |
| TGTCTCTCTATGTTTAGCCT+CGG | 0.549766 | 1.3:+66770203 | None:intergenic |
| AACCAACAGACAATTCACTA+AGG | 0.552273 | 1.3:+66770159 | None:intergenic |
| GCAAGATACTGCTGACGGAA+AGG | 0.557282 | 1.3:-66767570 | MS.gene006020:CDS |
| GCATCGGCAACCATTGGATG+CGG | 0.557385 | 1.3:+66770041 | None:intergenic |
| CTGTTGACTCTGGATTCTGG+TGG | 0.560824 | 1.3:-66768471 | MS.gene006020:CDS |
| AGCAACTCCAGAGCAGTCAA+TGG | 0.562784 | 1.3:-66767264 | MS.gene006020:CDS |
| AGTCGGCTCTCAGTGTTCGA+TGG | 0.565802 | 1.3:-66770267 | MS.gene006020:CDS |
| ATACCAAACATGGTCTATTG+CGG | 0.570548 | 1.3:-66766574 | MS.gene006020:CDS |
| TGCCGAGAGTCGTTTACTGA+AGG | 0.571524 | 1.3:-66766658 | MS.gene006020:CDS |
| ATTGACTTTATGCTTGTCAG+AGG | 0.572993 | 1.3:-66768362 | MS.gene006020:CDS |
| GAAATCATCCCCAAGTGTGA+GGG | 0.573270 | 1.3:+66766519 | None:intergenic |
| GTCGTTTACTGAAGGATGGA+TGG | 0.575163 | 1.3:-66766650 | MS.gene006020:CDS |
| GATAGGTTTAAACTTGGGGA+AGG | 0.579136 | 1.3:-66768592 | MS.gene006020:CDS |
| CTGCATGATTGATAGAAGAA+TGG | 0.580250 | 1.3:-66768299 | MS.gene006020:intron |
| GACAGAGATCATTTGATGAG+AGG | 0.581865 | 1.3:-66770184 | MS.gene006020:CDS |
| GACACTACATCTTCAGGGGT+GGG | 0.583162 | 1.3:-66768626 | MS.gene006020:CDS |
| GACTTTATGCCAACACGTGG+TGG | 0.583242 | 1.3:-66767371 | MS.gene006020:CDS |
| GAGAGTCGTTTACTGAAGGA+TGG | 0.585747 | 1.3:-66766654 | MS.gene006020:CDS |
| CATCGAAAATCCATTCGAGC+GGG | 0.586081 | 1.3:+66767326 | None:intergenic |
| CATATGGGAATTAGGAAAGT+CGG | 0.586182 | 1.3:-66770284 | MS.gene006020:CDS |
| AGTTGCGAGCAGATGAAGCA+GGG | 0.592201 | 1.3:+66770072 | None:intergenic |
| ACTCGTGACTTTCTATTGCA+GGG | 0.593543 | 1.3:+66767174 | None:intergenic |
| GCTCGTTGGGATGAGTTGGT+TGG | 0.593613 | 1.3:-66767221 | MS.gene006020:CDS |
| ACCAACAGACAATTCACTAA+GGG | 0.600417 | 1.3:+66770160 | None:intergenic |
| TGGAGGACCCCTCACACTTG+GGG | 0.604221 | 1.3:-66766527 | MS.gene006020:CDS |
| GGAAATCATCCCCAAGTGTG+AGG | 0.608698 | 1.3:+66766518 | None:intergenic |
| TGACTTTATGCTTGTCAGAG+GGG | 0.613950 | 1.3:-66768360 | MS.gene006020:CDS |
| GAGAATTGGAGAGAATGGAT+GGG | 0.614047 | 1.3:-66770307 | None:intergenic |
| ATGAAGTAGCCACCACGTGT+TGG | 0.617112 | 1.3:+66767362 | None:intergenic |
| AGACACTACATCTTCAGGGG+TGG | 0.617643 | 1.3:-66768627 | MS.gene006020:CDS |
| CAGCTGCTTGCATCAAGACA+GGG | 0.626845 | 1.3:-66766713 | MS.gene006020:CDS |
| AGGCAAGAAAATACCAAACA+TGG | 0.630162 | 1.3:-66766584 | MS.gene006020:CDS |
| CTCAAGCAAGATACTGCTGA+CGG | 0.630483 | 1.3:-66767575 | MS.gene006020:CDS |
| TGTTGATCATCAAGCAGAGG+AGG | 0.637062 | 1.3:-66769955 | MS.gene006020:CDS |
| GTGCTTACACAAAATCTACA+GGG | 0.638309 | 1.3:-66768435 | MS.gene006020:CDS |
| TAAAGACACTACATCTTCAG+GGG | 0.641893 | 1.3:-66768630 | MS.gene006020:CDS |
| AAATCATCCCCAAGTGTGAG+GGG | 0.644060 | 1.3:+66766520 | None:intergenic |
| AAGCAGCTGTTACAAGCCAT+AGG | 0.647567 | 1.3:+66766727 | None:intergenic |
| AGATGGAGTTACCATAATGG+AGG | 0.663691 | 1.3:-66767116 | MS.gene006020:CDS |
| AGCTGTTGATCATCAAGCAG+AGG | 0.665755 | 1.3:-66769958 | MS.gene006020:CDS |
| CCATCGAAAATCCATTCGAG+CGG | 0.675035 | 1.3:+66767325 | None:intergenic |
| GGATGGCCTGAATATTACGA+TGG | 0.679721 | 1.3:-66766633 | MS.gene006020:CDS |
| TTTGACTTTATGCCAACACG+TGG | 0.685176 | 1.3:-66767374 | MS.gene006020:CDS |
| GTTGCGAGCAGATGAAGCAG+GGG | 0.696052 | 1.3:+66770073 | None:intergenic |
| CTGCAATAGAAAGTCACGAG+TGG | 0.705027 | 1.3:-66767172 | MS.gene006020:CDS |
| TGCTTACACAAAATCTACAG+GGG | 0.706001 | 1.3:-66768434 | MS.gene006020:CDS |
| CATTTATCGGTACAAGACTG+AGG | 0.710749 | 1.3:-66767459 | MS.gene006020:CDS |
| TATGACAATTACTCGCCTGG+AGG | 0.730881 | 1.3:-66770113 | MS.gene006020:CDS |
| GGTGGCCAAGATGATGCTGG+AGG | 0.759245 | 1.3:-66766544 | MS.gene006020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATTTGTTTAATCAAA+AGG | - | chr1.3:66767138-66767157 | MS.gene006020:CDS | 10.0% |
| !! | AAATAAGTTTAATGTTATTC+CGG | - | chr1.3:66769334-66769353 | MS.gene006020:intron | 15.0% |
| !! | AACTTTAATATAGTTTATTG+TGG | - | chr1.3:66769750-66769769 | MS.gene006020:intron | 15.0% |
| !! | ACTTTAATATAGTTTATTGT+GGG | - | chr1.3:66769751-66769770 | MS.gene006020:intron | 15.0% |
| !! | ATAATCAGTTTAAAAATTTC+AGG | - | chr1.3:66767067-66767086 | MS.gene006020:intron | 15.0% |
| !! | TAAAATTCAATATTCTGATT+TGG | - | chr1.3:66766856-66766875 | MS.gene006020:intron | 15.0% |
| !!! | AAGAAATTTTTTACTATTTC+TGG | + | chr1.3:66768099-66768118 | None:intergenic | 15.0% |
| !!! | ATGATAAATTTTTCTCTTTT+AGG | - | chr1.3:66768020-66768039 | MS.gene006020:intron | 15.0% |
| !! | AAAAAATTTAGCTATCATTC+TGG | + | chr1.3:66767287-66767306 | None:intergenic | 20.0% |
| !! | AAAAATTTAGCTATCATTCT+GGG | + | chr1.3:66767286-66767305 | None:intergenic | 20.0% |
| !! | AAATAAGATTATCCATAGAA+AGG | + | chr1.3:66769890-66769909 | None:intergenic | 20.0% |
| !! | ACAAATAAATAGATGAGATT+TGG | + | chr1.3:66767129-66767148 | None:intergenic | 20.0% |
| !! | ATGAATCATTATAACAGTTA+TGG | + | chr1.3:66767842-66767861 | None:intergenic | 20.0% |
| !! | TATTCAAAGTTCATTTAACT+TGG | - | chr1.3:66769697-66769716 | MS.gene006020:intron | 20.0% |
| !!! | ATAATTTTACTCCATATACT+TGG | - | chr1.3:66766881-66766900 | MS.gene006020:intron | 20.0% |
| !!! | ATTATTTTTACCTATCAATC+TGG | + | chr1.3:66767449-66767468 | None:intergenic | 20.0% |
| !!! | ATTCAAAGTTCATTTAACTT+GGG | - | chr1.3:66769698-66769717 | MS.gene006020:intron | 20.0% |
| !!! | ATTTTCCAATTTATTGTTCA+AGG | - | chr1.3:66768579-66768598 | MS.gene006020:CDS | 20.0% |
| !!! | GTTTTAATCTCTTTAATATG+TGG | - | chr1.3:66768996-66769015 | MS.gene006020:intron | 20.0% |
| ! | AAAATTTAGCTATCATTCTG+GGG | + | chr1.3:66767285-66767304 | None:intergenic | 25.0% |
| ! | ACAAAATGAAAAGTTAGAGA+AGG | + | chr1.3:66769981-66770000 | None:intergenic | 25.0% |
| ! | ACATTATCTAGTTATTTGGA+TGG | - | chr1.3:66768526-66768545 | MS.gene006020:CDS | 25.0% |
| ! | AGCAACTAAATGACATTTAT+CGG | - | chr1.3:66769279-66769298 | MS.gene006020:intron | 25.0% |
| ! | ATAACTCATATCCAAGTATA+TGG | + | chr1.3:66766895-66766914 | None:intergenic | 25.0% |
| ! | ATGCTATAAGTTGTTCTTAT+AGG | - | chr1.3:66768763-66768782 | MS.gene006020:intron | 25.0% |
| ! | CATAACCTTGAACAATAAAT+TGG | + | chr1.3:66768587-66768606 | None:intergenic | 25.0% |
| ! | CATTAGATGAATTTGACATA+TGG | + | chr1.3:66768924-66768943 | None:intergenic | 25.0% |
| ! | CCTAAAAAGAACAACATTAA+TGG | + | chr1.3:66767183-66767202 | None:intergenic | 25.0% |
| ! | CTGTGTAAAGGTAAAAAAAT+TGG | + | chr1.3:66767968-66767987 | None:intergenic | 25.0% |
| ! | CTTATTTATACAGTGGTTAT+TGG | - | chr1.3:66769903-66769922 | MS.gene006020:intron | 25.0% |
| ! | GAAAAGATTTGCAACATATT+TGG | - | chr1.3:66769939-66769958 | MS.gene006020:CDS | 25.0% |
| ! | GTAAGTATTATCAATCTGTT+TGG | + | chr1.3:66769812-66769831 | None:intergenic | 25.0% |
| ! | GTTTGGATAAACAAATTGTT+TGG | - | chr1.3:66768665-66768684 | MS.gene006020:CDS | 25.0% |
| ! | TATCAATCCATAAGAATGAA+GGG | + | chr1.3:66767559-66767578 | None:intergenic | 25.0% |
| ! | TCCAAATAACTAGATAATGT+TGG | + | chr1.3:66768526-66768545 | None:intergenic | 25.0% |
| ! | TCTTACTCTTATTCAACTAT+GGG | - | chr1.3:66768639-66768658 | MS.gene006020:CDS | 25.0% |
| ! | TGATTAAAAGATCATCTTCT+TGG | - | chr1.3:66770284-66770303 | MS.gene006020:CDS | 25.0% |
| ! | TGCAATATCACATATATCAA+AGG | - | chr1.3:66766969-66766988 | MS.gene006020:intron | 25.0% |
| ! | TTTGATATATGTGATATTGC+AGG | + | chr1.3:66766970-66766989 | None:intergenic | 25.0% |
| !! | AACAATTTGTTTATCCAAAC+AGG | + | chr1.3:66768665-66768684 | None:intergenic | 25.0% |
| !! | AGGAAAAGCATATAATTTAC+TGG | - | chr1.3:66767200-66767219 | MS.gene006020:CDS | 25.0% |
| !! | CCATTAATGTTGTTCTTTTT+AGG | - | chr1.3:66767180-66767199 | MS.gene006020:CDS | 25.0% |
| !! | GGATAATCTTATTTATACAG+TGG | - | chr1.3:66769896-66769915 | MS.gene006020:intron | 25.0% |
| !!! | ACTAAATACAGAGTCATTTT+TGG | - | chr1.3:66769781-66769800 | MS.gene006020:intron | 25.0% |
| !!! | TTCAAAGTTCATTTAACTTG+GGG | - | chr1.3:66769699-66769718 | MS.gene006020:intron | 25.0% |
| AAAAAGTTAAGGCATGAACT+CGG | + | chr1.3:66769853-66769872 | None:intergenic | 30.0% | |
| AGAGTAGATAGGTTTAAACT+TGG | - | chr1.3:66768153-66768172 | MS.gene006020:intron | 30.0% | |
| AGTAGATAGGTTTAAACTTG+GGG | - | chr1.3:66768155-66768174 | MS.gene006020:intron | 30.0% | |
| AGTTTACCATCGTAATATTC+AGG | + | chr1.3:66770127-66770146 | None:intergenic | 30.0% | |
| ATAGAAATGAAGATTGTAGC+TGG | - | chr1.3:66767576-66767595 | MS.gene006020:CDS | 30.0% | |
| ATCAATCCATAAATGTCAAG+AGG | + | chr1.3:66767643-66767662 | None:intergenic | 30.0% | |
| ATCAATCCATAAGAATGAAG+GGG | + | chr1.3:66767558-66767577 | None:intergenic | 30.0% | |
| ATGGTTAAGTGAACAAAAAG+AGG | + | chr1.3:66767164-66767183 | None:intergenic | 30.0% | |
| ATTATCCATAGAAAGGATGA+GGG | + | chr1.3:66769883-66769902 | None:intergenic | 30.0% | |
| CTATCAATCCATAAGAATGA+AGG | + | chr1.3:66767560-66767579 | None:intergenic | 30.0% | |
| CTTTCCTTTAACAAACAACT+TGG | - | chr1.3:66767617-66767636 | MS.gene006020:CDS | 30.0% | |
| GAATATTACGATGGTAAACT+TGG | - | chr1.3:66770127-66770146 | MS.gene006020:CDS | 30.0% | |
| GAATCTGATAGTTGTCAAAA+AGG | - | chr1.3:66768354-66768373 | MS.gene006020:CDS | 30.0% | |
| GAGTAGATAGGTTTAAACTT+GGG | - | chr1.3:66768154-66768173 | MS.gene006020:intron | 30.0% | |
| GCCAACATTATCTAGTTATT+TGG | - | chr1.3:66768522-66768541 | MS.gene006020:CDS | 30.0% | |
| GTAAACTTGGAAGATATGTT+GGG | - | chr1.3:66770140-66770159 | MS.gene006020:CDS | 30.0% | |
| GTCAAATTCATCTAATGATG+TGG | - | chr1.3:66768927-66768946 | MS.gene006020:intron | 30.0% | |
| GTCTTACTCTTATTCAACTA+TGG | - | chr1.3:66768638-66768657 | MS.gene006020:CDS | 30.0% | |
| GTTGTTCTTATAGGCTATAT+TGG | - | chr1.3:66768772-66768791 | MS.gene006020:intron | 30.0% | |
| TAACACATAGGTTTCACATT+GGG | + | chr1.3:66767327-66767346 | None:intergenic | 30.0% | |
| TAAGCTTTACGAGATTGTTT+AGG | + | chr1.3:66768863-66768882 | None:intergenic | 30.0% | |
| TAATATGTGGTTTCAATTCG+AGG | - | chr1.3:66769009-66769028 | MS.gene006020:intron | 30.0% | |
| TAGATACTTGAGTAACACAT+AGG | + | chr1.3:66767339-66767358 | None:intergenic | 30.0% | |
| TCAAAGTTAACTTTGACATC+TGG | + | chr1.3:66767104-66767123 | None:intergenic | 30.0% | |
| TTAAAGACACTACATCTTCA+GGG | - | chr1.3:66768120-66768139 | MS.gene006020:intron | 30.0% | |
| TTAAATCCCCTTCATTCTTA+TGG | - | chr1.3:66767549-66767568 | MS.gene006020:CDS | 30.0% | |
| ! | AAACCTGGTGTCAATATAAA+GGG | - | chr1.3:66767396-66767415 | MS.gene006020:CDS | 30.0% |
| ! | AAATCTCTAGTCCATTTTAG+AGG | - | chr1.3:66766749-66766768 | MS.gene006020:intron | 30.0% |
| ! | AGAGATAGATAGCAATTTTC+GGG | + | chr1.3:66767241-66767260 | None:intergenic | 30.0% |
| ! | GAAGATGATCTTTTAATCAC+TGG | + | chr1.3:66770283-66770302 | None:intergenic | 30.0% |
| ! | GAGAGATAGATAGCAATTTT+CGG | + | chr1.3:66767242-66767261 | None:intergenic | 30.0% |
| ! | GATAAATGTCATTTAGTTGC+TGG | + | chr1.3:66769280-66769299 | None:intergenic | 30.0% |
| ! | GATACTCTTATTGCAGATTT+TGG | - | chr1.3:66768231-66768250 | MS.gene006020:intron | 30.0% |
| ! | TAACTCCATCTGGTATTTTT+AGG | + | chr1.3:66769626-66769645 | None:intergenic | 30.0% |
| !! | AAAAGTGCTTGAATCTCAAT+AGG | + | chr1.3:66769125-66769144 | None:intergenic | 30.0% |
| !! | AAGAAAGAGACCATTTTTCT+TGG | - | chr1.3:66767486-66767505 | MS.gene006020:CDS | 30.0% |
| !! | TTCATTTTGTTTCATGCTCT+CGG | - | chr1.3:66769991-66770010 | MS.gene006020:CDS | 30.0% |
| !!! | AAGAGTATCTGTTTTCCTAA+CGG | + | chr1.3:66768220-66768239 | None:intergenic | 30.0% |
| AACCAACAGACAATTCACTA+AGG | + | chr1.3:66766595-66766614 | None:intergenic | 35.0% | |
| AACTAAGCATGATGAGAGAA+AGG | + | chr1.3:66769678-66769697 | None:intergenic | 35.0% | |
| AATTTGACATATGGCCTGTT+TGG | + | chr1.3:66768915-66768934 | None:intergenic | 35.0% | |
| ACCAACAGACAATTCACTAA+GGG | + | chr1.3:66766594-66766613 | None:intergenic | 35.0% | |
| ACTAAGCATGATGAGAGAAA+GGG | + | chr1.3:66769677-66769696 | None:intergenic | 35.0% | |
| AGGCAAGAAAATACCAAACA+TGG | - | chr1.3:66770167-66770186 | MS.gene006020:CDS | 35.0% | |
| AGGGGGAAAAGAAAAAGTTA+AGG | + | chr1.3:66769864-66769883 | None:intergenic | 35.0% | |
| ATAAAGTCAAACACCCATTC+TGG | + | chr1.3:66769368-66769387 | None:intergenic | 35.0% | |
| ATACCAAACATGGTCTATTG+CGG | - | chr1.3:66770177-66770196 | MS.gene006020:CDS | 35.0% | |
| CATATGGGAATTAGGAAAGT+CGG | - | chr1.3:66766467-66766486 | MS.gene006020:CDS | 35.0% | |
| CTCACATGTTCCAAGAAAAA+TGG | + | chr1.3:66767499-66767518 | None:intergenic | 35.0% | |
| CTGCATGATTGATAGAAGAA+TGG | - | chr1.3:66768452-66768471 | MS.gene006020:CDS | 35.0% | |
| GATTATCCATAGAAAGGATG+AGG | + | chr1.3:66769884-66769903 | None:intergenic | 35.0% | |
| GGTAAACTTGGAAGATATGT+TGG | - | chr1.3:66770139-66770158 | MS.gene006020:CDS | 35.0% | |
| GTAACACATAGGTTTCACAT+TGG | + | chr1.3:66767328-66767347 | None:intergenic | 35.0% | |
| GTGATCCTAAAAATACCAGA+TGG | - | chr1.3:66769618-66769637 | MS.gene006020:intron | 35.0% | |
| GTGCTTACACAAAATCTACA+GGG | - | chr1.3:66768316-66768335 | MS.gene006020:CDS | 35.0% | |
| GTTAAAGACACTACATCTTC+AGG | - | chr1.3:66768119-66768138 | MS.gene006020:intron | 35.0% | |
| TAAAGACACTACATCTTCAG+GGG | - | chr1.3:66768121-66768140 | MS.gene006020:intron | 35.0% | |
| TAACCCTTTATATTGACACC+AGG | + | chr1.3:66767402-66767421 | None:intergenic | 35.0% | |
| TAGGAAAACAATACGAAACC+TGG | - | chr1.3:66767381-66767400 | MS.gene006020:CDS | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr1.3:66768898-66768917 | MS.gene006020:intron | 35.0% | |
| TCTACAAGACATACAATCTG+TGG | - | chr1.3:66767003-66767022 | MS.gene006020:intron | 35.0% | |
| TGATTGATAGAAGAATGGTG+AGG | - | chr1.3:66768457-66768476 | MS.gene006020:CDS | 35.0% | |
| TGCTTACACAAAATCTACAG+GGG | - | chr1.3:66768317-66768336 | MS.gene006020:CDS | 35.0% | |
| TGGTTCACCATTCATCAAAA+AGG | + | chr1.3:66768079-66768098 | None:intergenic | 35.0% | |
| TTACCTATCAATCTGGTAAC+AGG | + | chr1.3:66767442-66767461 | None:intergenic | 35.0% | |
| TTATCCATAGAAAGGATGAG+GGG | + | chr1.3:66769882-66769901 | None:intergenic | 35.0% | |
| TTGACTTTATGCTTGTCAGA+GGG | - | chr1.3:66768390-66768409 | MS.gene006020:CDS | 35.0% | |
| TTGTAGCTGGATGTTTAATC+AGG | - | chr1.3:66767589-66767608 | MS.gene006020:CDS | 35.0% | |
| ! | ATTGACTTTATGCTTGTCAG+AGG | - | chr1.3:66768389-66768408 | MS.gene006020:CDS | 35.0% |
| ! | GAAACCTGGTGTCAATATAA+AGG | - | chr1.3:66767395-66767414 | MS.gene006020:CDS | 35.0% |
| ! | GATTCAAGCACTTTTCTTCA+TGG | - | chr1.3:66769130-66769149 | MS.gene006020:intron | 35.0% |
| ! | GTATTGTTTTCCTAGCAATC+TGG | + | chr1.3:66767375-66767394 | None:intergenic | 35.0% |
| ! | TTATCTCTGCAAGTTTTCAC+TGG | - | chr1.3:66766935-66766954 | MS.gene006020:intron | 35.0% |
| ! | TTTTTACCTTTACACAGTCG+TGG | - | chr1.3:66767971-66767990 | MS.gene006020:intron | 35.0% |
| !! | GCAGGGTAACTAATTTTTAG+CGG | + | chr1.3:66769563-66769582 | None:intergenic | 35.0% |
| !! | GTTGTCTCTAAAATGTCAAG+AGG | + | chr1.3:66767728-66767747 | None:intergenic | 35.0% |
| !! | TCATTTTGTTTCATGCTCTC+GGG | - | chr1.3:66769992-66770011 | MS.gene006020:CDS | 35.0% |
| !! | TTCACATGAGAAGCTACTTT+TGG | - | chr1.3:66769246-66769265 | MS.gene006020:intron | 35.0% |
| !!! | AATTGTCTGTTGGTTTTGCA+AGG | - | chr1.3:66766600-66766619 | MS.gene006020:CDS | 35.0% |
| !!! | ATTGTCTGTTGGTTTTGCAA+GGG | - | chr1.3:66766601-66766620 | MS.gene006020:CDS | 35.0% |
| !!! | GATTTTCGATGGTTTGCTTT+AGG | - | chr1.3:66769437-66769456 | MS.gene006020:intron | 35.0% |
| AACTATGACAATTACTCGCC+TGG | - | chr1.3:66766635-66766654 | MS.gene006020:CDS | 40.0% | |
| AATTGGTCCACTGTACTTTG+TGG | + | chr1.3:66767951-66767970 | None:intergenic | 40.0% | |
| ACCAGATGGAGTTACCATAA+TGG | - | chr1.3:66769632-66769651 | MS.gene006020:intron | 40.0% | |
| ACTCGTGACTTTCTATTGCA+GGG | + | chr1.3:66769580-66769599 | None:intergenic | 40.0% | |
| ACTTGGCCTCTTGACATTTA+TGG | - | chr1.3:66767634-66767653 | MS.gene006020:CDS | 40.0% | |
| AGATGGAGTTACCATAATGG+AGG | - | chr1.3:66769635-66769654 | MS.gene006020:intron | 40.0% | |
| ATATCCATAAACACCCTGCA+AGG | + | chr1.3:66769102-66769121 | None:intergenic | 40.0% | |
| ATCCTTCAGTAAACGACTCT+CGG | + | chr1.3:66770098-66770117 | None:intergenic | 40.0% | |
| ATGCCTGTTACCAGATTGAT+AGG | - | chr1.3:66767436-66767455 | MS.gene006020:CDS | 40.0% | |
| ATTGTTTCCTTCTCCTTGCA+GGG | - | chr1.3:66769086-66769105 | MS.gene006020:intron | 40.0% | |
| CATCTGCTTGTCTTCTTCAA+GGG | + | chr1.3:66770257-66770276 | None:intergenic | 40.0% | |
| CATTTATCGGTACAAGACTG+AGG | - | chr1.3:66769292-66769311 | MS.gene006020:intron | 40.0% | |
| CCGAAGTTCAACTCGTATTT+CGG | - | chr1.3:66769034-66769053 | MS.gene006020:intron | 40.0% | |
| CGTGCTTACACAAAATCTAC+AGG | - | chr1.3:66768315-66768334 | MS.gene006020:CDS | 40.0% | |
| GACAGAGATCATTTGATGAG+AGG | - | chr1.3:66766567-66766586 | MS.gene006020:CDS | 40.0% | |
| GATAGGTTTAAACTTGGGGA+AGG | - | chr1.3:66768159-66768178 | MS.gene006020:intron | 40.0% | |
| GCACAAGTGCTTATCATGTT+TGG | - | chr1.3:66768696-66768715 | MS.gene006020:CDS | 40.0% | |
| GCTTATTTGAGCTTCTCTAC+TGG | + | chr1.3:66768888-66768907 | None:intergenic | 40.0% | |
| GGATCTTATTGAAGCTCGTT+GGG | - | chr1.3:66769517-66769536 | MS.gene006020:intron | 40.0% | |
| TACCAAACATGGTCTATTGC+GGG | - | chr1.3:66770178-66770197 | MS.gene006020:CDS | 40.0% | |
| TACCCTGCAAAGAACAAAAC+AGG | - | chr1.3:66767782-66767801 | MS.gene006020:intron | 40.0% | |
| TATCCATAGAAAGGATGAGG+GGG | + | chr1.3:66769881-66769900 | None:intergenic | 40.0% | |
| TATTCAACTATGGGCCTGTT+TGG | - | chr1.3:66768648-66768667 | MS.gene006020:CDS | 40.0% | |
| TCATCTGCTTGTCTTCTTCA+AGG | + | chr1.3:66770258-66770277 | None:intergenic | 40.0% | |
| TCCATTATGGTAACTCCATC+TGG | + | chr1.3:66769636-66769655 | None:intergenic | 40.0% | |
| TCCCTTAGTGAATTGTCTGT+TGG | - | chr1.3:66766590-66766609 | MS.gene006020:CDS | 40.0% | |
| TCCGGATTCAATTCCAGAAT+GGG | - | chr1.3:66769352-66769371 | MS.gene006020:intron | 40.0% | |
| TCGGATCAAAATCAGAGGTA+TGG | + | chr1.3:66769834-66769853 | None:intergenic | 40.0% | |
| TGAACTCGGATCAAAATCAG+AGG | + | chr1.3:66769839-66769858 | None:intergenic | 40.0% | |
| TGACTTTATGCTTGTCAGAG+GGG | - | chr1.3:66768391-66768410 | MS.gene006020:CDS | 40.0% | |
| TGGAAGATATGTTGGGAAAC+AGG | - | chr1.3:66770147-66770166 | MS.gene006020:CDS | 40.0% | |
| TGGATCTTATTGAAGCTCGT+TGG | - | chr1.3:66769516-66769535 | MS.gene006020:intron | 40.0% | |
| TGTCTCTCTATGTTTAGCCT+CGG | + | chr1.3:66766551-66766570 | None:intergenic | 40.0% | |
| TGTGATATTGCAGGTTCATG+TGG | + | chr1.3:66766961-66766980 | None:intergenic | 40.0% | |
| TTAAAACCAGATCTTCCTCC+AGG | + | chr1.3:66766656-66766675 | None:intergenic | 40.0% | |
| TTCCGGATTCAATTCCAGAA+TGG | - | chr1.3:66769351-66769370 | MS.gene006020:intron | 40.0% | |
| ! | ACTTTGACATCTGGTGTCAA+CGG | + | chr1.3:66767095-66767114 | None:intergenic | 40.0% |
| ! | ATCAAAAAGGCTAGAGCACT+TGG | + | chr1.3:66768066-66768085 | None:intergenic | 40.0% |
| ! | ATGGTCTATTGCGGGTTATT+TGG | - | chr1.3:66770186-66770205 | MS.gene006020:CDS | 40.0% |
| ! | ATTTAGCTATCATTCTGGGG+AGG | + | chr1.3:66767282-66767301 | None:intergenic | 40.0% |
| ! | CCGAAATACGAGTTGAACTT+CGG | + | chr1.3:66769037-66769056 | None:intergenic | 40.0% |
| ! | GAGGCCAAGTTGTTTGTTAA+AGG | + | chr1.3:66767624-66767643 | None:intergenic | 40.0% |
| ! | GTTACCATAATGGAGGATCT+TGG | - | chr1.3:66769642-66769661 | MS.gene006020:intron | 40.0% |
| ! | TCAAAAAGGCTAGAGCACTT+GGG | + | chr1.3:66768065-66768084 | None:intergenic | 40.0% |
| ! | TTTGACTTTATGCCAACACG+TGG | - | chr1.3:66769377-66769396 | MS.gene006020:intron | 40.0% |
| ! | TTTTCCTAACGGCATCATGA+AGG | + | chr1.3:66768209-66768228 | None:intergenic | 40.0% |
| !! | ACCCATTCTGGAATTGAATC+CGG | + | chr1.3:66769356-66769375 | None:intergenic | 40.0% |
| !! | ATTGCACGTCTTGCTATTTG+TGG | + | chr1.3:66770067-66770086 | None:intergenic | 40.0% |
| !! | GATTTTGGCGAAAGTGCAAT+CGG | - | chr1.3:66768246-66768265 | MS.gene006020:intron | 40.0% |
| !! | GCTCTAGCCTTTTTGATGAA+TGG | - | chr1.3:66768069-66768088 | MS.gene006020:intron | 40.0% |
| !! | GGAGGTTCTAAATTACGATC+AGG | - | chr1.3:66766814-66766833 | MS.gene006020:intron | 40.0% |
| !! | TGAAGGACTTTGAAACTAGC+TGG | + | chr1.3:66768192-66768211 | None:intergenic | 40.0% |
| !! | TGCCTGTTTTGTTCTTTGCA+GGG | + | chr1.3:66767787-66767806 | None:intergenic | 40.0% |
| !! | TTGCCTGTTTTGTTCTTTGC+AGG | + | chr1.3:66767788-66767807 | None:intergenic | 40.0% |
| AAATCATCCCCAAGTGTGAG+GGG | + | chr1.3:66770234-66770253 | None:intergenic | 45.0% | |
| AACCCGCAATAGACCATGTT+TGG | + | chr1.3:66770183-66770202 | None:intergenic | 45.0% | |
| AAGCAGCTGTTACAAGCCAT+AGG | + | chr1.3:66770027-66770046 | None:intergenic | 45.0% | |
| AAGTCCTTCATGATGCCGTT+AGG | - | chr1.3:66768202-66768221 | MS.gene006020:intron | 45.0% | |
| AGAGCAGTCAATGGCAATCA+TGG | - | chr1.3:66769496-66769515 | MS.gene006020:intron | 45.0% | |
| AGATTTCCTGAGAGATTCCC+AGG | + | chr1.3:66766735-66766754 | None:intergenic | 45.0% | |
| AGCAGTATCTTGCTTGAGCA+TGG | + | chr1.3:66769174-66769193 | None:intergenic | 45.0% | |
| AGCTGTTGATCATCAAGCAG+AGG | - | chr1.3:66766793-66766812 | MS.gene006020:intron | 45.0% | |
| ATAAACACCCTGCAAGGAGA+AGG | + | chr1.3:66769096-66769115 | None:intergenic | 45.0% | |
| ATCTCACTCGTTTGCTTGAC+AGG | - | chr1.3:66766525-66766544 | MS.gene006020:CDS | 45.0% | |
| CACTCGTGACTTTCTATTGC+AGG | + | chr1.3:66769581-66769600 | None:intergenic | 45.0% | |
| CATCGAAAATCCATTCGAGC+GGG | + | chr1.3:66769428-66769447 | None:intergenic | 45.0% | |
| CCATCGAAAATCCATTCGAG+CGG | + | chr1.3:66769429-66769448 | None:intergenic | 45.0% | |
| CTCAAGCAAGATACTGCTGA+CGG | - | chr1.3:66769176-66769195 | MS.gene006020:intron | 45.0% | |
| CTGCAATAGAAAGTCACGAG+TGG | - | chr1.3:66769579-66769598 | MS.gene006020:intron | 45.0% | |
| CTTTACACAGTCGTGGACAT+CGG | - | chr1.3:66767978-66767997 | MS.gene006020:intron | 45.0% | |
| GAAATCATCCCCAAGTGTGA+GGG | + | chr1.3:66770235-66770254 | None:intergenic | 45.0% | |
| GACATATGGCCTGTTTGGAT+TGG | + | chr1.3:66768910-66768929 | None:intergenic | 45.0% | |
| GAGAGTCGTTTACTGAAGGA+TGG | - | chr1.3:66770097-66770116 | MS.gene006020:CDS | 45.0% | |
| GATGAGAGAAAGGGAAAACC+TGG | + | chr1.3:66769668-66769687 | None:intergenic | 45.0% | |
| GATTGTTTCCTTCTCCTTGC+AGG | - | chr1.3:66769085-66769104 | MS.gene006020:intron | 45.0% | |
| GGATGGCCTGAATATTACGA+TGG | - | chr1.3:66770118-66770137 | MS.gene006020:CDS | 45.0% | |
| GGTGGGAGAAAAGAGTAGAT+AGG | - | chr1.3:66768142-66768161 | MS.gene006020:intron | 45.0% | |
| GTCGTTTACTGAAGGATGGA+TGG | - | chr1.3:66770101-66770120 | MS.gene006020:CDS | 45.0% | |
| TATGACAATTACTCGCCTGG+AGG | - | chr1.3:66766638-66766657 | MS.gene006020:CDS | 45.0% | |
| TGGATGGGCATATGGGAATT+AGG | - | chr1.3:66766459-66766478 | MS.gene006020:CDS | 45.0% | |
| TGTTGATCATCAAGCAGAGG+AGG | - | chr1.3:66766796-66766815 | MS.gene006020:intron | 45.0% | |
| TTTCCCCCTCATCCTTTCTA+TGG | - | chr1.3:66769875-66769894 | MS.gene006020:intron | 45.0% | |
| ! | ATGATTGCCATTGACTGCTC+TGG | + | chr1.3:66769497-66769516 | None:intergenic | 45.0% |
| ! | CAACAGGTGCACCTCTAAAA+TGG | + | chr1.3:66766763-66766782 | None:intergenic | 45.0% |
| ! | GTCTATTGCGGGTTATTTGG+TGG | - | chr1.3:66770189-66770208 | MS.gene006020:CDS | 45.0% |
| ! | TTCTCCTTGCAGGGTGTTTA+TGG | - | chr1.3:66769095-66769114 | MS.gene006020:intron | 45.0% |
| !! | CATTTTAGAGGTGCACCTGT+TGG | - | chr1.3:66766761-66766780 | MS.gene006020:intron | 45.0% |
| AAATGTCAGTCCCGCTCGAA+TGG | - | chr1.3:66769415-66769434 | MS.gene006020:intron | 50.0% | |
| ACACGTGGTGGCTACTTCAT+TGG | - | chr1.3:66769392-66769411 | MS.gene006020:intron | 50.0% | |
| ACAGCTGCAATTGTGCCAAC+AGG | + | chr1.3:66766779-66766798 | None:intergenic | 50.0% | |
| ACAGCTGCTTGCATCAAGAC+AGG | - | chr1.3:66770037-66770056 | MS.gene006020:CDS | 50.0% | |
| AGACACTACATCTTCAGGGG+TGG | - | chr1.3:66768124-66768143 | MS.gene006020:intron | 50.0% | |
| AGCAACTCCAGAGCAGTCAA+TGG | - | chr1.3:66769487-66769506 | MS.gene006020:intron | 50.0% | |
| AGTTGCGAGCAGATGAAGCA+GGG | + | chr1.3:66766682-66766701 | None:intergenic | 50.0% | |
| ATGAAGTAGCCACCACGTGT+TGG | + | chr1.3:66769392-66769411 | None:intergenic | 50.0% | |
| CACCAGAATCCAGAGTCAAC+AGG | + | chr1.3:66768282-66768301 | None:intergenic | 50.0% | |
| CACGAGTGGCGAATTGTTAC+TGG | - | chr1.3:66769593-66769612 | MS.gene006020:intron | 50.0% | |
| CAGCTGCTTGCATCAAGACA+GGG | - | chr1.3:66770038-66770057 | MS.gene006020:CDS | 50.0% | |
| CCAACTCTGCTTTGTGCTGA+TGG | - | chr1.3:66768426-66768445 | MS.gene006020:CDS | 50.0% | |
| CCATCAGCACAAAGCAGAGT+TGG | + | chr1.3:66768429-66768448 | None:intergenic | 50.0% | |
| CGATGTCCACGACTGTGTAA+AGG | + | chr1.3:66767980-66767999 | None:intergenic | 50.0% | |
| CTGGCCAAGATCCTCCATTA+TGG | + | chr1.3:66769649-66769668 | None:intergenic | 50.0% | |
| GACACTACATCTTCAGGGGT+GGG | - | chr1.3:66768125-66768144 | MS.gene006020:intron | 50.0% | |
| GACTTTATGCCAACACGTGG+TGG | - | chr1.3:66769380-66769399 | MS.gene006020:intron | 50.0% | |
| GCAAGATACTGCTGACGGAA+AGG | - | chr1.3:66769181-66769200 | MS.gene006020:intron | 50.0% | |
| GGAAATCATCCCCAAGTGTG+AGG | + | chr1.3:66770236-66770255 | None:intergenic | 50.0% | |
| GTGTGCGTTACCAGATTGCT+AGG | - | chr1.3:66767362-66767381 | MS.gene006020:CDS | 50.0% | |
| GTTGCCTCCACAAAGTACAG+TGG | - | chr1.3:66767941-66767960 | MS.gene006020:intron | 50.0% | |
| TCAGTGTTCGATGGCTGAGA+TGG | - | chr1.3:66766493-66766512 | MS.gene006020:CDS | 50.0% | |
| TGAAGCTCGTTGGGATGAGT+TGG | - | chr1.3:66769526-66769545 | MS.gene006020:intron | 50.0% | |
| TGCCGAGAGTCGTTTACTGA+AGG | - | chr1.3:66770093-66770112 | MS.gene006020:CDS | 50.0% | |
| TGGTCCACTGTACTTTGTGG+AGG | + | chr1.3:66767948-66767967 | None:intergenic | 50.0% | |
| ! | CATAATGGAGGATCTTGGCC+AGG | - | chr1.3:66769647-66769666 | MS.gene006020:intron | 50.0% |
| ! | TAGCTATCATTCTGGGGAGG+AGG | + | chr1.3:66767279-66767298 | None:intergenic | 50.0% |
| ! | TTTGGTGGCCAAGATGATGC+TGG | - | chr1.3:66770204-66770223 | MS.gene006020:CDS | 50.0% |
| !! | AGAGTTGCTCCTGTTGACTC+TGG | - | chr1.3:66768270-66768289 | MS.gene006020:intron | 50.0% |
| !! | CCGCTCGAATGGATTTTCGA+TGG | - | chr1.3:66769426-66769445 | MS.gene006020:intron | 50.0% |
| !! | CTCCTGTTGACTCTGGATTC+TGG | - | chr1.3:66768277-66768296 | MS.gene006020:intron | 50.0% |
| !! | CTGTTGACTCTGGATTCTGG+TGG | - | chr1.3:66768280-66768299 | MS.gene006020:intron | 50.0% |
| !!! | CTGTTGGTTTTGCAAGGGCT+GGG | - | chr1.3:66766606-66766625 | MS.gene006020:CDS | 50.0% |
| !!! | TCTGTTGGTTTTGCAAGGGC+TGG | - | chr1.3:66766605-66766624 | MS.gene006020:CDS | 50.0% |
| ATCCAATGGTTGCCGATGCC+TGG | - | chr1.3:66766714-66766733 | MS.gene006020:CDS | 55.0% | |
| CCTGAGAGATTCCCAGGCAT+CGG | + | chr1.3:66766729-66766748 | None:intergenic | 55.0% | |
| CTCGTTTGAGCCGCATCCAA+TGG | - | chr1.3:66766700-66766719 | MS.gene006020:CDS | 55.0% | |
| GAGTTGCGAGCAGATGAAGC+AGG | + | chr1.3:66766683-66766702 | None:intergenic | 55.0% | |
| GTTGCGAGCAGATGAAGCAG+GGG | + | chr1.3:66766681-66766700 | None:intergenic | 55.0% | |
| TACTCGCCTGGAGGAAGATC+TGG | - | chr1.3:66766647-66766666 | MS.gene006020:CDS | 55.0% | |
| TCCAATGGTTGCCGATGCCT+GGG | - | chr1.3:66766715-66766734 | MS.gene006020:CDS | 55.0% | |
| ! | AGTCGGCTCTCAGTGTTCGA+TGG | - | chr1.3:66766484-66766503 | MS.gene006020:CDS | 55.0% |
| ! | GCATCGGCAACCATTGGATG+CGG | + | chr1.3:66766713-66766732 | None:intergenic | 55.0% |
| ! | TGTGAGTTGAGAGCACGTGC+TGG | - | chr1.3:66767513-66767532 | MS.gene006020:CDS | 55.0% |
| !! | GCTCGTTGGGATGAGTTGGT+TGG | - | chr1.3:66769530-66769549 | MS.gene006020:intron | 55.0% |
| CCGATGCCTGGGAATCTCTC+AGG | - | chr1.3:66766726-66766745 | MS.gene006020:CDS | 60.0% | |
| CTCGTTTGCTTGACAGGCCG+AGG | - | chr1.3:66766531-66766550 | MS.gene006020:CDS | 60.0% | |
| CTGGAGGACCCCTCACACTT+GGG | - | chr1.3:66770223-66770242 | MS.gene006020:CDS | 60.0% | |
| GGGGTCCTCCAGCATCATCT+TGG | + | chr1.3:66770215-66770234 | None:intergenic | 60.0% | |
| GGTGGCCAAGATGATGCTGG+AGG | - | chr1.3:66770207-66770226 | MS.gene006020:CDS | 60.0% | |
| TCTCGGGTGCAGTGCTCCTA+TGG | - | chr1.3:66770008-66770027 | MS.gene006020:CDS | 60.0% | |
| TGGAGGACCCCTCACACTTG+GGG | - | chr1.3:66770224-66770243 | MS.gene006020:CDS | 60.0% | |
| !! | TCCCAGGCATCGGCAACCAT+TGG | + | chr1.3:66766719-66766738 | None:intergenic | 60.0% |
| GCTGGAGGACCCCTCACACT+TGG | - | chr1.3:66770222-66770241 | MS.gene006020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 66766458 | 66770315 | 66766458 | ID=MS.gene006020 |
| chr1.3 | mRNA | 66766458 | 66770315 | 66766458 | ID=MS.gene006020.t1;Parent=MS.gene006020 |
| chr1.3 | exon | 66769938 | 66770315 | 66769938 | ID=MS.gene006020.t1.exon1;Parent=MS.gene006020.t1 |
| chr1.3 | CDS | 66769938 | 66770315 | 66769938 | ID=cds.MS.gene006020.t1;Parent=MS.gene006020.t1 |
| chr1.3 | exon | 66768300 | 66768731 | 66768300 | ID=MS.gene006020.t1.exon2;Parent=MS.gene006020.t1 |
| chr1.3 | CDS | 66768300 | 66768731 | 66768300 | ID=cds.MS.gene006020.t1;Parent=MS.gene006020.t1 |
| chr1.3 | exon | 66767105 | 66767666 | 66767105 | ID=MS.gene006020.t1.exon3;Parent=MS.gene006020.t1 |
| chr1.3 | CDS | 66767105 | 66767666 | 66767105 | ID=cds.MS.gene006020.t1;Parent=MS.gene006020.t1 |
| chr1.3 | exon | 66766458 | 66766753 | 66766458 | ID=MS.gene006020.t1.exon4;Parent=MS.gene006020.t1 |
| chr1.3 | CDS | 66766458 | 66766753 | 66766458 | ID=cds.MS.gene006020.t1;Parent=MS.gene006020.t1 |
| Gene Sequence |
| Protein sequence |
