Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33980.t1 | XP_003591999.1 | 100 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.00E+00 | 1152.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33980.t1 | Q67XD9 | 83.7 | 558 | 85 | 4 | 2 | 555 | 3 | 558 | 1.4e-282 | 973.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33980.t1 | G7IAG4 | 100.0 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.0e+00 | 1152.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene33980 | -0.838553 | 2.69E-57 | -1.69E-46 |
MS.gene049180 | MS.gene33980 | 0.86104 | 1.36E-63 | -1.69E-46 |
MS.gene04921 | MS.gene33980 | 0.811075 | 8.39E-51 | -1.69E-46 |
MS.gene049281 | MS.gene33980 | 0.843157 | 1.66E-58 | -1.69E-46 |
MS.gene049285 | MS.gene33980 | -0.80293 | 4.44E-49 | -1.69E-46 |
MS.gene049312 | MS.gene33980 | 0.808068 | 3.71E-50 | -1.69E-46 |
MS.gene049865 | MS.gene33980 | -0.808303 | 3.31E-50 | -1.69E-46 |
MS.gene05010 | MS.gene33980 | -0.811597 | 6.47E-51 | -1.69E-46 |
MS.gene050170 | MS.gene33980 | -0.88898 | 3.65E-73 | -1.69E-46 |
MS.gene050323 | MS.gene33980 | -0.821702 | 3.51E-53 | -1.69E-46 |
MS.gene050496 | MS.gene33980 | -0.874924 | 4.62E-68 | -1.69E-46 |
MS.gene050504 | MS.gene33980 | -0.842887 | 1.97E-58 | -1.69E-46 |
MS.gene050577 | MS.gene33980 | -0.852569 | 4.24E-61 | -1.69E-46 |
MS.gene050612 | MS.gene33980 | -0.81025 | 1.27E-50 | -1.69E-46 |
MS.gene050699 | MS.gene33980 | -0.8254 | 4.79E-54 | -1.69E-46 |
MS.gene050818 | MS.gene33980 | 0.823597 | 1.27E-53 | -1.69E-46 |
MS.gene050868 | MS.gene33980 | -0.825901 | 3.64E-54 | -1.69E-46 |
MS.gene050871 | MS.gene33980 | -0.824641 | 7.23E-54 | -1.69E-46 |
MS.gene050883 | MS.gene33980 | 0.81553 | 8.82E-52 | -1.69E-46 |
MS.gene050904 | MS.gene33980 | -0.805374 | 1.38E-49 | -1.69E-46 |
MS.gene050986 | MS.gene33980 | -0.809981 | 1.45E-50 | -1.69E-46 |
MS.gene051946 | MS.gene33980 | 0.826614 | 2.46E-54 | -1.69E-46 |
MS.gene051973 | MS.gene33980 | 0.81756 | 3.10E-52 | -1.69E-46 |
MS.gene052015 | MS.gene33980 | 0.834459 | 2.96E-56 | -1.69E-46 |
MS.gene052164 | MS.gene33980 | -0.822653 | 2.11E-53 | -1.69E-46 |
MS.gene052482 | MS.gene33980 | -0.823742 | 1.18E-53 | -1.69E-46 |
MS.gene052486 | MS.gene33980 | -0.838783 | 2.34E-57 | -1.69E-46 |
MS.gene052494 | MS.gene33980 | 0.863516 | 2.35E-64 | -1.69E-46 |
MS.gene052503 | MS.gene33980 | -0.829268 | 5.66E-55 | -1.69E-46 |
MS.gene052506 | MS.gene33980 | -0.802321 | 5.93E-49 | -1.69E-46 |
MS.gene052823 | MS.gene33980 | -0.836523 | 8.91E-57 | -1.69E-46 |
MS.gene052825 | MS.gene33980 | -0.832353 | 9.92E-56 | -1.69E-46 |
MS.gene052962 | MS.gene33980 | 0.811037 | 8.55E-51 | -1.69E-46 |
MS.gene053083 | MS.gene33980 | 0.839547 | 1.48E-57 | -1.69E-46 |
MS.gene053097 | MS.gene33980 | 0.854729 | 1.01E-61 | -1.69E-46 |
MS.gene053203 | MS.gene33980 | -0.846499 | 2.09E-59 | -1.69E-46 |
MS.gene053218 | MS.gene33980 | 0.812818 | 3.50E-51 | -1.69E-46 |
MS.gene053278 | MS.gene33980 | 0.816616 | 5.05E-52 | -1.69E-46 |
MS.gene053479 | MS.gene33980 | -0.80461 | 1.99E-49 | -1.69E-46 |
MS.gene053480 | MS.gene33980 | -0.808005 | 3.83E-50 | -1.69E-46 |
MS.gene053549 | MS.gene33980 | 0.848049 | 7.85E-60 | -1.69E-46 |
MS.gene053824 | MS.gene33980 | -0.815679 | 8.17E-52 | -1.69E-46 |
MS.gene054343 | MS.gene33980 | -0.828672 | 7.89E-55 | -1.69E-46 |
MS.gene054344 | MS.gene33980 | -0.85137 | 9.27E-61 | -1.69E-46 |
MS.gene05470 | MS.gene33980 | -0.882801 | 7.68E-71 | -1.69E-46 |
MS.gene054851 | MS.gene33980 | 0.812018 | 5.23E-51 | -1.69E-46 |
MS.gene054954 | MS.gene33980 | -0.836038 | 1.18E-56 | -1.69E-46 |
MS.gene054959 | MS.gene33980 | 0.826129 | 3.21E-54 | -1.69E-46 |
MS.gene055251 | MS.gene33980 | 0.806635 | 7.47E-50 | -1.69E-46 |
MS.gene055362 | MS.gene33980 | -0.819531 | 1.11E-52 | -1.69E-46 |
MS.gene055502 | MS.gene33980 | -0.824176 | 9.30E-54 | -1.69E-46 |
MS.gene055577 | MS.gene33980 | -0.831632 | 1.50E-55 | -1.69E-46 |
MS.gene055719 | MS.gene33980 | 0.863053 | 3.28E-64 | -1.69E-46 |
MS.gene055751 | MS.gene33980 | -0.800079 | 1.71E-48 | -1.69E-46 |
MS.gene05589 | MS.gene33980 | -0.873925 | 1.01E-67 | -1.69E-46 |
MS.gene056198 | MS.gene33980 | 0.807349 | 5.28E-50 | -1.69E-46 |
MS.gene056266 | MS.gene33980 | -0.827657 | 1.39E-54 | -1.69E-46 |
MS.gene056311 | MS.gene33980 | 0.801796 | 7.60E-49 | -1.69E-46 |
MS.gene056504 | MS.gene33980 | -0.857588 | 1.47E-62 | -1.69E-46 |
MS.gene056510 | MS.gene33980 | -0.809219 | 2.11E-50 | -1.69E-46 |
MS.gene056610 | MS.gene33980 | -0.815109 | 1.09E-51 | -1.69E-46 |
MS.gene056692 | MS.gene33980 | -0.811785 | 5.88E-51 | -1.69E-46 |
MS.gene056694 | MS.gene33980 | 0.810247 | 1.27E-50 | -1.69E-46 |
MS.gene056988 | MS.gene33980 | 0.821643 | 3.62E-53 | -1.69E-46 |
MS.gene057014 | MS.gene33980 | 0.826775 | 2.25E-54 | -1.69E-46 |
MS.gene057100 | MS.gene33980 | 0.829395 | 5.27E-55 | -1.69E-46 |
MS.gene05726 | MS.gene33980 | 0.826596 | 2.49E-54 | -1.69E-46 |
MS.gene057499 | MS.gene33980 | 0.811745 | 6.00E-51 | -1.69E-46 |
MS.gene057831 | MS.gene33980 | -0.800405 | 1.46E-48 | -1.69E-46 |
MS.gene058157 | MS.gene33980 | -0.811651 | 6.29E-51 | -1.69E-46 |
MS.gene058334 | MS.gene33980 | 0.851454 | 8.78E-61 | -1.69E-46 |
MS.gene05837 | MS.gene33980 | -0.84061 | 7.84E-58 | -1.69E-46 |
MS.gene058382 | MS.gene33980 | 0.800929 | 1.14E-48 | -1.69E-46 |
MS.gene058419 | MS.gene33980 | -0.802335 | 5.89E-49 | -1.69E-46 |
MS.gene058544 | MS.gene33980 | -0.820393 | 7.02E-53 | -1.69E-46 |
MS.gene058838 | MS.gene33980 | -0.816632 | 5.00E-52 | -1.69E-46 |
MS.gene058996 | MS.gene33980 | 0.831064 | 2.06E-55 | -1.69E-46 |
MS.gene059022 | MS.gene33980 | -0.831186 | 1.93E-55 | -1.69E-46 |
MS.gene059023 | MS.gene33980 | -0.861503 | 9.80E-64 | -1.69E-46 |
MS.gene059103 | MS.gene33980 | 0.841568 | 4.39E-58 | -1.69E-46 |
MS.gene059303 | MS.gene33980 | -0.815053 | 1.13E-51 | -1.69E-46 |
MS.gene059480 | MS.gene33980 | 0.848125 | 7.48E-60 | -1.69E-46 |
MS.gene059677 | MS.gene33980 | -0.810767 | 9.79E-51 | -1.69E-46 |
MS.gene059756 | MS.gene33980 | -0.810878 | 9.26E-51 | -1.69E-46 |
MS.gene059837 | MS.gene33980 | -0.883299 | 5.05E-71 | -1.69E-46 |
MS.gene059865 | MS.gene33980 | -0.819845 | 9.38E-53 | -1.69E-46 |
MS.gene05996 | MS.gene33980 | -0.808675 | 2.76E-50 | -1.69E-46 |
MS.gene06000 | MS.gene33980 | -0.852031 | 6.03E-61 | -1.69E-46 |
MS.gene060076 | MS.gene33980 | 0.819212 | 1.31E-52 | -1.69E-46 |
MS.gene060187 | MS.gene33980 | 0.824734 | 6.87E-54 | -1.69E-46 |
MS.gene06027 | MS.gene33980 | -0.820633 | 6.19E-53 | -1.69E-46 |
MS.gene060358 | MS.gene33980 | 0.806817 | 6.84E-50 | -1.69E-46 |
MS.gene060593 | MS.gene33980 | 0.83065 | 2.61E-55 | -1.69E-46 |
MS.gene060595 | MS.gene33980 | 0.849676 | 2.78E-60 | -1.69E-46 |
MS.gene060703 | MS.gene33980 | -0.808109 | 3.64E-50 | -1.69E-46 |
MS.gene060762 | MS.gene33980 | -0.814904 | 1.21E-51 | -1.69E-46 |
MS.gene060778 | MS.gene33980 | -0.834237 | 3.37E-56 | -1.69E-46 |
MS.gene06077 | MS.gene33980 | -0.878847 | 2.02E-69 | -1.69E-46 |
MS.gene060982 | MS.gene33980 | -0.864316 | 1.33E-64 | -1.69E-46 |
MS.gene061044 | MS.gene33980 | 0.870567 | 1.32E-66 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33980 | MS.gene97437 | PPI |
MS.gene33980 | MS.gene041734 | PPI |
MS.gene006020 | MS.gene33980 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33980.t1 | MTR_1g096140 | 100.000 | 555 | 0 | 0 | 1 | 555 | 1 | 555 | 0.0 | 1157 |
MS.gene33980.t1 | MTR_1g095970 | 86.126 | 555 | 57 | 2 | 1 | 555 | 19 | 553 | 0.0 | 978 |
MS.gene33980.t1 | MTR_3g117710 | 73.369 | 567 | 132 | 6 | 2 | 554 | 12 | 573 | 0.0 | 874 |
MS.gene33980.t1 | MTR_4g075540 | 69.866 | 448 | 129 | 4 | 47 | 493 | 9 | 451 | 0.0 | 656 |
MS.gene33980.t1 | MTR_8g092170 | 58.952 | 458 | 182 | 2 | 91 | 543 | 165 | 621 | 0.0 | 586 |
MS.gene33980.t1 | MTR_7g111890 | 59.062 | 469 | 186 | 4 | 79 | 543 | 116 | 582 | 0.0 | 577 |
MS.gene33980.t1 | MTR_1g084610 | 59.823 | 453 | 176 | 3 | 92 | 540 | 114 | 564 | 0.0 | 575 |
MS.gene33980.t1 | MTR_4g123030 | 53.714 | 525 | 226 | 6 | 34 | 543 | 118 | 640 | 0.0 | 572 |
MS.gene33980.t1 | MTR_4g123030 | 59.945 | 362 | 137 | 3 | 91 | 446 | 184 | 543 | 7.41e-154 | 451 |
MS.gene33980.t1 | MTR_3g015100 | 57.792 | 154 | 63 | 1 | 293 | 446 | 2 | 153 | 6.31e-62 | 201 |
MS.gene33980.t1 | MTR_3g025460 | 64.286 | 70 | 25 | 0 | 129 | 198 | 91 | 160 | 2.69e-19 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33980.t1 | AT4G09510 | 83.692 | 558 | 85 | 4 | 2 | 555 | 3 | 558 | 0.0 | 973 |
MS.gene33980.t1 | AT1G35580 | 82.852 | 554 | 88 | 4 | 1 | 553 | 1 | 548 | 0.0 | 962 |
MS.gene33980.t1 | AT1G35580 | 82.852 | 554 | 88 | 4 | 1 | 553 | 1 | 548 | 0.0 | 962 |
MS.gene33980.t1 | AT1G22650 | 82.936 | 545 | 79 | 5 | 10 | 554 | 4 | 534 | 0.0 | 945 |
MS.gene33980.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
MS.gene33980.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
MS.gene33980.t1 | AT4G34860 | 77.660 | 564 | 105 | 6 | 6 | 555 | 15 | 571 | 0.0 | 907 |
MS.gene33980.t1 | AT1G72000 | 82.329 | 498 | 86 | 2 | 58 | 554 | 3 | 499 | 0.0 | 874 |
MS.gene33980.t1 | AT4G09510 | 82.391 | 460 | 75 | 4 | 2 | 457 | 3 | 460 | 0.0 | 790 |
MS.gene33980.t1 | AT1G35580 | 81.562 | 461 | 78 | 4 | 1 | 460 | 1 | 455 | 0.0 | 787 |
MS.gene33980.t1 | AT1G22650 | 81.473 | 448 | 69 | 5 | 10 | 457 | 4 | 437 | 0.0 | 764 |
MS.gene33980.t1 | AT5G22510 | 59.477 | 459 | 180 | 2 | 91 | 544 | 134 | 591 | 0.0 | 587 |
MS.gene33980.t1 | AT5G22510 | 59.477 | 459 | 180 | 2 | 91 | 544 | 134 | 591 | 0.0 | 587 |
MS.gene33980.t1 | AT1G56560 | 58.114 | 456 | 187 | 2 | 91 | 543 | 134 | 588 | 0.0 | 576 |
MS.gene33980.t1 | AT3G06500 | 59.041 | 459 | 180 | 3 | 91 | 543 | 182 | 638 | 0.0 | 566 |
MS.gene33980.t1 | AT3G05820 | 56.987 | 458 | 191 | 3 | 91 | 543 | 150 | 606 | 0.0 | 557 |
MS.gene33980.t1 | AT3G06500 | 58.376 | 394 | 156 | 3 | 156 | 543 | 48 | 439 | 2.54e-166 | 481 |
MS.gene33980.t1 | AT3G05820 | 57.341 | 361 | 148 | 3 | 91 | 446 | 150 | 509 | 2.43e-147 | 434 |
Find 130 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCCTTGCAGGGTGTTTA+TGG | 0.100926 | 1.4:-74688663 | MS.gene33980:intron |
GATACTCTTATTGCAGATTT+TGG | 0.135753 | 1.4:-74689527 | MS.gene33980:CDS |
CTCCTGTTGACTCTGGATTC+TGG | 0.209312 | 1.4:-74689481 | MS.gene33980:CDS |
CGGTTCACCATTCATCAAAA+AGG | 0.261228 | 1.4:+74689682 | None:intergenic |
TGATTAAAAGATCATCTTCT+TGG | 0.264825 | 1.4:-74687474 | MS.gene33980:CDS |
ATGGTCTATTGCGGGTTATT+TGG | 0.279758 | 1.4:-74687572 | MS.gene33980:CDS |
AGCAACTAAATGACATTTAT+CGG | 0.283643 | 1.4:-74688479 | MS.gene33980:CDS |
TGGATGGGCATATGGGAATT+AGG | 0.284454 | 1.4:-74691303 | MS.gene33980:CDS |
CACTCGTGACTTTCTATTGC+AGG | 0.287232 | 1.4:+74688180 | None:intergenic |
CACGAGTGGCGAATTGTTAC+TGG | 0.296374 | 1.4:-74688165 | MS.gene33980:CDS |
GTTAAAGACACTACATCTTC+AGG | 0.309497 | 1.4:-74689639 | MS.gene33980:CDS |
TTCACATGAGAAGCTACTTT+TGG | 0.315196 | 1.4:-74688512 | MS.gene33980:CDS |
ATCCAATGGTTGCCGATGCC+TGG | 0.318785 | 1.4:-74691048 | MS.gene33980:CDS |
AGTTTACCATCGTAATATTC+AGG | 0.320203 | 1.4:+74687634 | None:intergenic |
CCAACTCTGCTTTGTGCTGA+TGG | 0.324554 | 1.4:-74689332 | MS.gene33980:CDS |
TCATCTGCTTGTCTTCTTCA+AGG | 0.335576 | 1.4:+74687503 | None:intergenic |
ATCTCACTCGTTTGCTTGAC+AGG | 0.343739 | 1.4:-74691237 | MS.gene33980:CDS |
AAATAAGTTTAATGTTATTC+CGG | 0.344511 | 1.4:-74688424 | MS.gene33980:CDS |
TGAGAGAATGGATGGGCATA+TGG | 0.344591 | 1.4:-74691311 | None:intergenic |
CTGGCCAAGATCCTCCATTA+TGG | 0.347238 | 1.4:+74688112 | None:intergenic |
ACACGTGGTGGCTACTTCAT+TGG | 0.356280 | 1.4:-74688366 | MS.gene33980:CDS |
CAACAGGTGCACCTCTAAAA+TGG | 0.356755 | 1.4:+74691002 | None:intergenic |
GATAAATGTCATTTAGTTGC+TGG | 0.364423 | 1.4:+74688481 | None:intergenic |
TGGAAGATATGTTGGGAAAC+AGG | 0.366576 | 1.4:-74687611 | MS.gene33980:CDS |
GAATCTGATAGTTGTCAAAA+AGG | 0.369286 | 1.4:-74689404 | MS.gene33980:CDS |
ATTGCACGTCTTGCTATTTG+TGG | 0.381527 | 1.4:+74687694 | None:intergenic |
TACTCGCCTGGAGGAAGATC+TGG | 0.392572 | 1.4:-74691115 | MS.gene33980:CDS |
AAAAGTGCTTGAATCTCAAT+AGG | 0.404944 | 1.4:+74688636 | None:intergenic |
AACCCGCAATAGACCATGTT+TGG | 0.407039 | 1.4:+74687578 | None:intergenic |
GGTAAACTTGGAAGATATGT+TGG | 0.414179 | 1.4:-74687619 | MS.gene33980:CDS |
TACCAAACATGGTCTATTGC+GGG | 0.414605 | 1.4:-74687580 | MS.gene33980:CDS |
TCCGGATTCAATTCCAGAAT+GGG | 0.421691 | 1.4:-74688406 | MS.gene33980:CDS |
GGATCTTATTGAAGCTCGTT+GGG | 0.432163 | 1.4:-74688241 | MS.gene33980:CDS |
GAATATTACGATGGTAAACT+TGG | 0.442361 | 1.4:-74687631 | MS.gene33980:CDS |
GAGTAGATAGGTTTAAACTT+GGG | 0.443964 | 1.4:-74689604 | MS.gene33980:CDS |
TCCATTATGGTAACTCCATC+TGG | 0.444012 | 1.4:+74688125 | None:intergenic |
AGAGCAGTCAATGGCAATCA+TGG | 0.446518 | 1.4:-74688262 | MS.gene33980:CDS |
ATGATTGCCATTGACTGCTC+TGG | 0.446728 | 1.4:+74688264 | None:intergenic |
CATCTGCTTGTCTTCTTCAA+GGG | 0.447224 | 1.4:+74687504 | None:intergenic |
CTGGAGGACCCCTCACACTT+GGG | 0.450103 | 1.4:-74687535 | MS.gene33980:CDS |
ATAAAGTCAAACACCCATTC+TGG | 0.451613 | 1.4:+74688393 | None:intergenic |
GTCTATTGCGGGTTATTTGG+TGG | 0.452343 | 1.4:-74687569 | MS.gene33980:CDS |
CGTGCTTACACAAAATCTAC+AGG | 0.455584 | 1.4:-74689443 | MS.gene33980:CDS |
TCCCTTAGTGAATTGTCTGT+TGG | 0.467466 | 1.4:-74691172 | MS.gene33980:CDS |
AGAGTTGCTCCTGTTGACTC+TGG | 0.469270 | 1.4:-74689488 | MS.gene33980:CDS |
ACCAGATGGAGTTACCATAA+TGG | 0.469371 | 1.4:-74688126 | MS.gene33980:CDS |
AGAGTAGATAGGTTTAAACT+TGG | 0.471746 | 1.4:-74689605 | MS.gene33980:CDS |
GGTGGGAGAAAAGAGTAGAT+AGG | 0.473013 | 1.4:-74689616 | MS.gene33980:CDS |
CACCAGAATCCAGAGTCAAC+AGG | 0.475876 | 1.4:+74689479 | None:intergenic |
TCTCGGGTGCAGTGCTCCTA+TGG | 0.481775 | 1.4:-74687750 | MS.gene33980:intron |
AAGTCCTTCATGATGCCGTT+AGG | 0.485437 | 1.4:-74689556 | MS.gene33980:CDS |
TTCCGGATTCAATTCCAGAA+TGG | 0.486144 | 1.4:-74688407 | MS.gene33980:CDS |
AACTATGACAATTACTCGCC+TGG | 0.487484 | 1.4:-74691127 | MS.gene33980:CDS |
TGGATCTTATTGAAGCTCGT+TGG | 0.487509 | 1.4:-74688242 | MS.gene33980:CDS |
ACCCATTCTGGAATTGAATC+CGG | 0.488781 | 1.4:+74688405 | None:intergenic |
TTAAAGACACTACATCTTCA+GGG | 0.492030 | 1.4:-74689638 | MS.gene33980:CDS |
ACAGCTGCTTGCATCAAGAC+AGG | 0.494728 | 1.4:-74687721 | MS.gene33980:CDS |
ACAGCTGCAATTGTGCCAAC+AGG | 0.495160 | 1.4:+74690986 | None:intergenic |
TCCCAGGCATCGGCAACCAT+TGG | 0.497056 | 1.4:+74691046 | None:intergenic |
CCATCAGCACAAAGCAGAGT+TGG | 0.497910 | 1.4:+74689332 | None:intergenic |
GCTGGAGGACCCCTCACACT+TGG | 0.498361 | 1.4:-74687536 | MS.gene33980:CDS |
GAGAGAATGGATGGGCATAT+GGG | 0.498937 | 1.4:-74691310 | None:intergenic |
AGTAGATAGGTTTAAACTTG+GGG | 0.499014 | 1.4:-74689603 | MS.gene33980:CDS |
TTGACTTTATGCTTGTCAGA+GGG | 0.502470 | 1.4:-74689368 | MS.gene33980:CDS |
TCCAATGGTTGCCGATGCCT+GGG | 0.503195 | 1.4:-74691047 | MS.gene33980:CDS |
GTAAACTTGGAAGATATGTT+GGG | 0.505556 | 1.4:-74687618 | MS.gene33980:CDS |
CTCGTTTGCTTGACAGGCCG+AGG | 0.505998 | 1.4:-74691231 | MS.gene33980:CDS |
GGGGTCCTCCAGCATCATCT+TGG | 0.509985 | 1.4:+74687546 | None:intergenic |
TCAGTGTTCGATGGCTGAGA+TGG | 0.510749 | 1.4:-74691269 | MS.gene33980:CDS |
TCTGAGAGATTCCCAGGCAT+CGG | 0.511999 | 1.4:+74691036 | None:intergenic |
GTTACCATAATGGAGGATCT+TGG | 0.514487 | 1.4:-74688116 | MS.gene33980:CDS |
ATCCTTCAGTAAACGACTCT+CGG | 0.516742 | 1.4:+74687663 | None:intergenic |
CTCGTTTGAGCCGCATCCAA+TGG | 0.519347 | 1.4:-74691062 | MS.gene33980:CDS |
GGAAGTTCTAAATTACGATC+AGG | 0.521332 | 1.4:-74690948 | MS.gene33980:intron |
GGAGAATTTGAGAGAATGGA+TGG | 0.524675 | 1.4:-74691319 | None:intergenic |
TGAAGGACTTTGAAACTAGC+TGG | 0.526537 | 1.4:+74689569 | None:intergenic |
CATAATGGAGGATCTTGGCC+AGG | 0.526915 | 1.4:-74688111 | MS.gene33980:intron |
TTAAAACCAGATCTTCCTCC+AGG | 0.527021 | 1.4:+74691109 | None:intergenic |
AGCAGTATCTTGCTTGAGCA+TGG | 0.533846 | 1.4:+74688587 | None:intergenic |
TGAAGCTCGTTGGGATGAGT+TGG | 0.534616 | 1.4:-74688232 | MS.gene33980:CDS |
GAGTTGCGAGCAGATGAAGC+AGG | 0.538724 | 1.4:+74691082 | None:intergenic |
TTTGGTGGCCAAGATGATGC+TGG | 0.539521 | 1.4:-74687554 | MS.gene33980:CDS |
AAATGTCAGTCCAGCTCGAA+TGG | 0.541335 | 1.4:-74688343 | MS.gene33980:CDS |
TGTCTCTCTATGTTTAGCCT+CGG | 0.549766 | 1.4:+74691214 | None:intergenic |
CATCGAAAATCCATTCGAGC+TGG | 0.551481 | 1.4:+74688333 | None:intergenic |
AACCAACAGACAATTCACTA+AGG | 0.552273 | 1.4:+74691170 | None:intergenic |
GCAAGATACTGCTGACGGAA+AGG | 0.557282 | 1.4:-74688577 | MS.gene33980:CDS |
GCATCGGCAACCATTGGATG+CGG | 0.557385 | 1.4:+74691052 | None:intergenic |
CTGTTGACTCTGGATTCTGG+TGG | 0.560824 | 1.4:-74689478 | MS.gene33980:CDS |
AGCAACTCCAGAGCAGTCAA+TGG | 0.562784 | 1.4:-74688271 | MS.gene33980:CDS |
AGTCGGCTCTCAGTGTTCGA+TGG | 0.565802 | 1.4:-74691278 | MS.gene33980:CDS |
ATACCAAACATGGTCTATTG+CGG | 0.570548 | 1.4:-74687581 | MS.gene33980:CDS |
TGCCGAGAGTCGTTTACTGA+AGG | 0.571524 | 1.4:-74687665 | MS.gene33980:CDS |
ATTGACTTTATGCTTGTCAG+AGG | 0.572993 | 1.4:-74689369 | MS.gene33980:CDS |
GAAATCATCCCCAAGTGTGA+GGG | 0.573270 | 1.4:+74687526 | None:intergenic |
GTCGTTTACTGAAGGATGGA+TGG | 0.575163 | 1.4:-74687657 | MS.gene33980:CDS |
GATAGGTTTAAACTTGGGGA+AGG | 0.579136 | 1.4:-74689599 | MS.gene33980:CDS |
CTGCATGATTGATAGAAGAA+TGG | 0.580250 | 1.4:-74689306 | MS.gene33980:intron |
GACAGAGATCATTTGATGAG+AGG | 0.581865 | 1.4:-74691195 | MS.gene33980:CDS |
GACACTACATCTTCAGGGGT+GGG | 0.583162 | 1.4:-74689633 | MS.gene33980:CDS |
GACTTTATGCCAACACGTGG+TGG | 0.583242 | 1.4:-74688378 | MS.gene33980:CDS |
GAGAGTCGTTTACTGAAGGA+TGG | 0.585747 | 1.4:-74687661 | MS.gene33980:CDS |
CATATGGGAATTAGGAAAGT+CGG | 0.586182 | 1.4:-74691295 | MS.gene33980:CDS |
AGTTGCGAGCAGATGAAGCA+GGG | 0.592201 | 1.4:+74691083 | None:intergenic |
ACTCGTGACTTTCTATTGCA+GGG | 0.593543 | 1.4:+74688181 | None:intergenic |
GCTCGTTGGGATGAGTTGGT+TGG | 0.593613 | 1.4:-74688228 | MS.gene33980:CDS |
ACCAACAGACAATTCACTAA+GGG | 0.600417 | 1.4:+74691171 | None:intergenic |
TGGAGGACCCCTCACACTTG+GGG | 0.604221 | 1.4:-74687534 | MS.gene33980:CDS |
GGAAATCATCCCCAAGTGTG+AGG | 0.608698 | 1.4:+74687525 | None:intergenic |
GAGAATTTGAGAGAATGGAT+GGG | 0.609978 | 1.4:-74691318 | None:intergenic |
TGACTTTATGCTTGTCAGAG+GGG | 0.613950 | 1.4:-74689367 | MS.gene33980:CDS |
ATGAAGTAGCCACCACGTGT+TGG | 0.617112 | 1.4:+74688369 | None:intergenic |
AGACACTACATCTTCAGGGG+TGG | 0.617643 | 1.4:-74689634 | MS.gene33980:CDS |
CAGCTGCTTGCATCAAGACA+GGG | 0.626845 | 1.4:-74687720 | MS.gene33980:CDS |
AGGCAAGAAAATACCAAACA+TGG | 0.630162 | 1.4:-74687591 | MS.gene33980:CDS |
CTCAAGCAAGATACTGCTGA+CGG | 0.630483 | 1.4:-74688582 | MS.gene33980:CDS |
GTGCTTACACAAAATCTACA+GGG | 0.638309 | 1.4:-74689442 | MS.gene33980:CDS |
TAAAGACACTACATCTTCAG+GGG | 0.641893 | 1.4:-74689637 | MS.gene33980:CDS |
AAATCATCCCCAAGTGTGAG+GGG | 0.644060 | 1.4:+74687527 | None:intergenic |
AAGCAGCTGTTACAAGCCAT+AGG | 0.647567 | 1.4:+74687734 | None:intergenic |
AGCTGTTGATCATCAAGCTG+AGG | 0.663273 | 1.4:-74690969 | MS.gene33980:CDS |
AGATGGAGTTACCATAATGG+AGG | 0.663691 | 1.4:-74688123 | MS.gene33980:CDS |
GGATGGCCTGAATATTACGA+TGG | 0.679721 | 1.4:-74687640 | MS.gene33980:CDS |
TTTGACTTTATGCCAACACG+TGG | 0.685176 | 1.4:-74688381 | MS.gene33980:CDS |
GTTGCGAGCAGATGAAGCAG+GGG | 0.696052 | 1.4:+74691084 | None:intergenic |
CTGCAATAGAAAGTCACGAG+TGG | 0.705027 | 1.4:-74688179 | MS.gene33980:CDS |
TGCTTACACAAAATCTACAG+GGG | 0.706001 | 1.4:-74689441 | MS.gene33980:CDS |
CATTTATCGGTACAAGACTG+AGG | 0.710749 | 1.4:-74688466 | MS.gene33980:CDS |
TATGACAATTACTCGCCTGG+AGG | 0.730881 | 1.4:-74691124 | MS.gene33980:CDS |
GGTGGCCAAGATGATGCTGG+AGG | 0.759245 | 1.4:-74687551 | MS.gene33980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTATTTGTTTAATCAAA+AGG | - | chr1.4:74688145-74688164 | MS.gene33980:CDS | 10.0% |
!! | AAATAAGTTTAATGTTATTC+CGG | - | chr1.4:74690345-74690364 | MS.gene33980:intron | 15.0% |
!! | AACTTTAATATAGTTTATTG+TGG | - | chr1.4:74690761-74690780 | MS.gene33980:intron | 15.0% |
!! | ACTTTAATATAGTTTATTGT+GGG | - | chr1.4:74690762-74690781 | MS.gene33980:intron | 15.0% |
!! | ATAATCAGTTTAAAAATTTC+AGG | - | chr1.4:74688074-74688093 | MS.gene33980:intron | 15.0% |
!!! | AAGAAATTTTTTACTATTTC+CGG | + | chr1.4:74689110-74689129 | None:intergenic | 15.0% |
!!! | ATGATAAATTTTTCTCTTTT+AGG | - | chr1.4:74689031-74689050 | MS.gene33980:intron | 15.0% |
!! | AAAAAAATTAGCTATCATTC+TGG | + | chr1.4:74688294-74688313 | None:intergenic | 20.0% |
!! | AAAAAATTAGCTATCATTCT+GGG | + | chr1.4:74688293-74688312 | None:intergenic | 20.0% |
!! | ACAAATAAATAGATGAGATT+TGG | + | chr1.4:74688136-74688155 | None:intergenic | 20.0% |
!! | ATGAATCATTATAACAGTTA+TGG | + | chr1.4:74688854-74688873 | None:intergenic | 20.0% |
!! | TAAAATTCAGTATTCTGATT+TGG | - | chr1.4:74687863-74687882 | MS.gene33980:intron | 20.0% |
!! | TATTCAAAGTTCATTTAACT+TGG | - | chr1.4:74690708-74690727 | MS.gene33980:intron | 20.0% |
!!! | ATAATTTTACTCCATATACT+TGG | - | chr1.4:74687888-74687907 | MS.gene33980:intron | 20.0% |
!!! | ATTATTTTTACCTATCAATC+TGG | + | chr1.4:74688461-74688480 | None:intergenic | 20.0% |
!!! | ATTCAAAGTTCATTTAACTT+GGG | - | chr1.4:74690709-74690728 | MS.gene33980:intron | 20.0% |
!!! | ATTTTCCAATTTATTGTTCA+AGG | - | chr1.4:74689590-74689609 | MS.gene33980:CDS | 20.0% |
!!! | GTTTTAATCTCTTTAATATG+TGG | - | chr1.4:74690007-74690026 | MS.gene33980:intron | 20.0% |
! | AAAAATTAGCTATCATTCTG+GGG | + | chr1.4:74688292-74688311 | None:intergenic | 25.0% |
! | AAATCAGATTATCCATAGAA+AGG | + | chr1.4:74690901-74690920 | None:intergenic | 25.0% |
! | ACAAAATGAAAAGTTAGAGA+AGG | + | chr1.4:74690992-74691011 | None:intergenic | 25.0% |
! | ACATTATCTAGTTATTTGGA+TGG | - | chr1.4:74689537-74689556 | MS.gene33980:CDS | 25.0% |
! | AGCAACTAAATGACATTTAT+CGG | - | chr1.4:74690290-74690309 | MS.gene33980:intron | 25.0% |
! | ATAACTCATATCCAAGTATA+TGG | + | chr1.4:74687902-74687921 | None:intergenic | 25.0% |
! | ATGCTATAAGTTGTTCTTAT+AGG | - | chr1.4:74689774-74689793 | MS.gene33980:intron | 25.0% |
! | ATGGTTAAATGAACAAAAAG+AGG | + | chr1.4:74688171-74688190 | None:intergenic | 25.0% |
! | CATAACCTTGAACAATAAAT+TGG | + | chr1.4:74689598-74689617 | None:intergenic | 25.0% |
! | CATTAGATGAATTTGACATA+TGG | + | chr1.4:74689935-74689954 | None:intergenic | 25.0% |
! | CCTAAAAAGAACAACATTAA+TGG | + | chr1.4:74688190-74688209 | None:intergenic | 25.0% |
! | CTGTGTAAAGGTAAAAAAAT+TGG | + | chr1.4:74688979-74688998 | None:intergenic | 25.0% |
! | GAAAAGATTTGCAACATATT+TGG | - | chr1.4:74690950-74690969 | MS.gene33980:CDS | 25.0% |
! | GTAAGTATTATCAATCTGTT+TGG | + | chr1.4:74690823-74690842 | None:intergenic | 25.0% |
! | GTTTGGATAAACAAATTGTT+TGG | - | chr1.4:74689676-74689695 | MS.gene33980:CDS | 25.0% |
! | TATCAATCCATAAGAATGAA+GGG | + | chr1.4:74688571-74688590 | None:intergenic | 25.0% |
! | TCCAAATAACTAGATAATGT+TGG | + | chr1.4:74689537-74689556 | None:intergenic | 25.0% |
! | TCTTACTCTTATTCAACTAT+GGG | - | chr1.4:74689650-74689669 | MS.gene33980:CDS | 25.0% |
! | TGATTAAAAGATCATCTTCT+TGG | - | chr1.4:74691295-74691314 | MS.gene33980:CDS | 25.0% |
! | TGCAATATCACATATATCAA+AGG | - | chr1.4:74687976-74687995 | MS.gene33980:intron | 25.0% |
! | TTTGATATATGTGATATTGC+AGG | + | chr1.4:74687977-74687996 | None:intergenic | 25.0% |
!! | AACAATTTGTTTATCCAAAC+AGG | + | chr1.4:74689676-74689695 | None:intergenic | 25.0% |
!! | AGGAAAAGCATATAATTTAC+TGG | - | chr1.4:74688207-74688226 | MS.gene33980:CDS | 25.0% |
!! | CCATTAATGTTGTTCTTTTT+AGG | - | chr1.4:74688187-74688206 | MS.gene33980:CDS | 25.0% |
!!! | ACTAAATACAGAGTCATTTT+TGG | - | chr1.4:74690792-74690811 | MS.gene33980:intron | 25.0% |
!!! | TTCAAAGTTCATTTAACTTG+GGG | - | chr1.4:74690710-74690729 | MS.gene33980:intron | 25.0% |
AAAAAGTTAAGGCATGAACT+CGG | + | chr1.4:74690864-74690883 | None:intergenic | 30.0% | |
AGAGTAGATAGGTTTAAACT+TGG | - | chr1.4:74689164-74689183 | MS.gene33980:intron | 30.0% | |
AGTAGATAGGTTTAAACTTG+GGG | - | chr1.4:74689166-74689185 | MS.gene33980:intron | 30.0% | |
AGTTTACCATCGTAATATTC+AGG | + | chr1.4:74691138-74691157 | None:intergenic | 30.0% | |
ATAGAAATGAAGATTGTAGC+TGG | - | chr1.4:74688588-74688607 | MS.gene33980:CDS | 30.0% | |
ATCAATCCATAAGAATGAAG+GGG | + | chr1.4:74688570-74688589 | None:intergenic | 30.0% | |
ATTATCCATAGAAAGGATGA+GGG | + | chr1.4:74690894-74690913 | None:intergenic | 30.0% | |
CTATCAATCCATAAGAATGA+AGG | + | chr1.4:74688572-74688591 | None:intergenic | 30.0% | |
CTGATTTATACAGTGGTTAT+TGG | - | chr1.4:74690914-74690933 | MS.gene33980:intron | 30.0% | |
CTTTCCTTTAACAAACAACT+TGG | - | chr1.4:74688629-74688648 | MS.gene33980:CDS | 30.0% | |
GAATATTACGATGGTAAACT+TGG | - | chr1.4:74691138-74691157 | MS.gene33980:CDS | 30.0% | |
GAATCTGATAGTTGTCAAAA+AGG | - | chr1.4:74689365-74689384 | MS.gene33980:CDS | 30.0% | |
GAGTAGATAGGTTTAAACTT+GGG | - | chr1.4:74689165-74689184 | MS.gene33980:intron | 30.0% | |
GCCAACATTATCTAGTTATT+TGG | - | chr1.4:74689533-74689552 | MS.gene33980:CDS | 30.0% | |
GGATAATCTGATTTATACAG+TGG | - | chr1.4:74690907-74690926 | MS.gene33980:intron | 30.0% | |
GTAAACTTGGAAGATATGTT+GGG | - | chr1.4:74691151-74691170 | MS.gene33980:CDS | 30.0% | |
GTCAAATTCATCTAATGATG+TGG | - | chr1.4:74689938-74689957 | MS.gene33980:intron | 30.0% | |
GTCTTACTCTTATTCAACTA+TGG | - | chr1.4:74689649-74689668 | MS.gene33980:CDS | 30.0% | |
GTTGTTCTTATAGGCTATAT+TGG | - | chr1.4:74689783-74689802 | MS.gene33980:intron | 30.0% | |
TAACACATAGGTTTCACATT+GGG | + | chr1.4:74688339-74688358 | None:intergenic | 30.0% | |
TAAGCTTTACGAGATTGTTT+AGG | + | chr1.4:74689874-74689893 | None:intergenic | 30.0% | |
TAATATGTGGTTTCAATTCG+AGG | - | chr1.4:74690020-74690039 | MS.gene33980:intron | 30.0% | |
TAGATACTTGAGTAACACAT+AGG | + | chr1.4:74688351-74688370 | None:intergenic | 30.0% | |
TCAAAGTTAACTTTGACATC+TGG | + | chr1.4:74688111-74688130 | None:intergenic | 30.0% | |
TGATTGATAGAAGAATGGTA+AGG | - | chr1.4:74689468-74689487 | MS.gene33980:CDS | 30.0% | |
TTAAAGACACTACATCTTCA+GGG | - | chr1.4:74689131-74689150 | MS.gene33980:intron | 30.0% | |
TTAAATCCCCTTCATTCTTA+TGG | - | chr1.4:74688561-74688580 | MS.gene33980:CDS | 30.0% | |
! | AAACCTGGTGTCAATATAAA+GGG | - | chr1.4:74688408-74688427 | MS.gene33980:CDS | 30.0% |
! | AAATCTCTAGTCCATTTTAG+AGG | - | chr1.4:74687756-74687775 | MS.gene33980:intron | 30.0% |
! | AGAGATAGATAGCAATTTTC+GGG | + | chr1.4:74688248-74688267 | None:intergenic | 30.0% |
! | GAAGATGATCTTTTAATCAC+TGG | + | chr1.4:74691294-74691313 | None:intergenic | 30.0% |
! | GAGAGATAGATAGCAATTTT+CGG | + | chr1.4:74688249-74688268 | None:intergenic | 30.0% |
! | GATAAATGTCATTTAGTTGC+TGG | + | chr1.4:74690291-74690310 | None:intergenic | 30.0% |
! | GATACTCTTATTGCAGATTT+TGG | - | chr1.4:74689242-74689261 | MS.gene33980:intron | 30.0% |
! | TAACTCCATCTGGTATTTTT+AGG | + | chr1.4:74690637-74690656 | None:intergenic | 30.0% |
!! | AAAAGTGCTTGAATCTCAAT+AGG | + | chr1.4:74690136-74690155 | None:intergenic | 30.0% |
!! | AAGAAAGAGACCATTTTTCT+TGG | - | chr1.4:74688498-74688517 | MS.gene33980:CDS | 30.0% |
!! | GTTATCTCTAAAATGTCAAG+AGG | + | chr1.4:74688740-74688759 | None:intergenic | 30.0% |
!! | TTCATTTTGTTTCATGCTCT+CGG | - | chr1.4:74691002-74691021 | MS.gene33980:CDS | 30.0% |
!!! | AAGAGTATCTGTTTTCCTAA+CGG | + | chr1.4:74689231-74689250 | None:intergenic | 30.0% |
AACCAACAGACAATTCACTA+AGG | + | chr1.4:74687602-74687621 | None:intergenic | 35.0% | |
AACTAAGCATGATGAGAGAA+AGG | + | chr1.4:74690689-74690708 | None:intergenic | 35.0% | |
AATTTGACATATGGCCTGTT+TGG | + | chr1.4:74689926-74689945 | None:intergenic | 35.0% | |
ACCAACAGACAATTCACTAA+GGG | + | chr1.4:74687601-74687620 | None:intergenic | 35.0% | |
ACTAAGCATGATGAGAGAAA+GGG | + | chr1.4:74690688-74690707 | None:intergenic | 35.0% | |
ACTTGGCTTCTTGACATTTA+TGG | - | chr1.4:74688646-74688665 | MS.gene33980:CDS | 35.0% | |
AGGCAAGAAAATACCAAACA+TGG | - | chr1.4:74691178-74691197 | MS.gene33980:CDS | 35.0% | |
AGGGGGAAAAGAAAAAGTTA+AGG | + | chr1.4:74690875-74690894 | None:intergenic | 35.0% | |
ATAAAGTCAAACACCCATTC+TGG | + | chr1.4:74690379-74690398 | None:intergenic | 35.0% | |
ATACCAAACATGGTCTATTG+CGG | - | chr1.4:74691188-74691207 | MS.gene33980:CDS | 35.0% | |
CATATGGGAATTAGGAAAGT+CGG | - | chr1.4:74687474-74687493 | MS.gene33980:CDS | 35.0% | |
CTCACATGTTCCAAGAAAAA+TGG | + | chr1.4:74688511-74688530 | None:intergenic | 35.0% | |
CTGCATGATTGATAGAAGAA+TGG | - | chr1.4:74689463-74689482 | MS.gene33980:CDS | 35.0% | |
GATTATCCATAGAAAGGATG+AGG | + | chr1.4:74690895-74690914 | None:intergenic | 35.0% | |
GGTAAACTTGGAAGATATGT+TGG | - | chr1.4:74691150-74691169 | MS.gene33980:CDS | 35.0% | |
GTAACACATAGGTTTCACAT+TGG | + | chr1.4:74688340-74688359 | None:intergenic | 35.0% | |
GTGATCCTAAAAATACCAGA+TGG | - | chr1.4:74690629-74690648 | MS.gene33980:intron | 35.0% | |
GTGCTTACACAAAATCTACA+GGG | - | chr1.4:74689327-74689346 | MS.gene33980:CDS | 35.0% | |
GTTAAAGACACTACATCTTC+AGG | - | chr1.4:74689130-74689149 | MS.gene33980:intron | 35.0% | |
TAAAGACACTACATCTTCAG+GGG | - | chr1.4:74689132-74689151 | MS.gene33980:intron | 35.0% | |
TAACCCTTTATATTGACACC+AGG | + | chr1.4:74688414-74688433 | None:intergenic | 35.0% | |
TAGGAAAACAATACGAAACC+TGG | - | chr1.4:74688393-74688412 | MS.gene33980:CDS | 35.0% | |
TCAAATAAGCCAATCCAAAC+AGG | - | chr1.4:74689909-74689928 | MS.gene33980:intron | 35.0% | |
TCTACAAGACATACAATCTG+TGG | - | chr1.4:74688010-74688029 | MS.gene33980:intron | 35.0% | |
TGCTTACACAAAATCTACAG+GGG | - | chr1.4:74689328-74689347 | MS.gene33980:CDS | 35.0% | |
TTACCTATCAATCTGGTAAC+AGG | + | chr1.4:74688454-74688473 | None:intergenic | 35.0% | |
TTATCCATAGAAAGGATGAG+GGG | + | chr1.4:74690893-74690912 | None:intergenic | 35.0% | |
TTGACTTTATGCTTGTCAGA+GGG | - | chr1.4:74689401-74689420 | MS.gene33980:CDS | 35.0% | |
TTGTAGCTGGATGTTTAATC+AGG | - | chr1.4:74688601-74688620 | MS.gene33980:CDS | 35.0% | |
! | ATTGACTTTATGCTTGTCAG+AGG | - | chr1.4:74689400-74689419 | MS.gene33980:CDS | 35.0% |
! | CCAAAATACGAGTTGAACTT+CGG | + | chr1.4:74690048-74690067 | None:intergenic | 35.0% |
! | CTTTTTGATGAATGGTGAAC+CGG | - | chr1.4:74689088-74689107 | MS.gene33980:intron | 35.0% |
! | GAAACCTGGTGTCAATATAA+AGG | - | chr1.4:74688407-74688426 | MS.gene33980:CDS | 35.0% |
! | GAAGCCAAGTTGTTTGTTAA+AGG | + | chr1.4:74688636-74688655 | None:intergenic | 35.0% |
! | GATTCAAGCACTTTTCTTCA+TGG | - | chr1.4:74690141-74690160 | MS.gene33980:intron | 35.0% |
! | GTATTGTTTTCCTAGCAATC+TGG | + | chr1.4:74688387-74688406 | None:intergenic | 35.0% |
! | TTATCTCTGCAAGTTTTCAC+TGG | - | chr1.4:74687942-74687961 | MS.gene33980:intron | 35.0% |
! | TTTTTACCTTTACACAGTCG+TGG | - | chr1.4:74688982-74689001 | MS.gene33980:intron | 35.0% |
!! | GCAGGGTAACTAATTTTTAG+CGG | + | chr1.4:74690574-74690593 | None:intergenic | 35.0% |
!! | GGAAGTTCTAAATTACGATC+AGG | - | chr1.4:74687821-74687840 | MS.gene33980:intron | 35.0% |
!! | TCATTTTGTTTCATGCTCTC+GGG | - | chr1.4:74691003-74691022 | MS.gene33980:CDS | 35.0% |
!! | TTCACATGAGAAGCTACTTT+TGG | - | chr1.4:74690257-74690276 | MS.gene33980:intron | 35.0% |
!!! | AATTGTCTGTTGGTTTTGCA+AGG | - | chr1.4:74687607-74687626 | MS.gene33980:CDS | 35.0% |
!!! | ATTGTCTGTTGGTTTTGCAA+GGG | - | chr1.4:74687608-74687627 | MS.gene33980:CDS | 35.0% |
!!! | GATTTTCGATGGTTTGCTTT+AGG | - | chr1.4:74690448-74690467 | MS.gene33980:intron | 35.0% |
AACTATGACAATTACTCGCC+TGG | - | chr1.4:74687642-74687661 | MS.gene33980:CDS | 40.0% | |
AATTGGTCCACTGTACTTTG+TGG | + | chr1.4:74688962-74688981 | None:intergenic | 40.0% | |
ACCAGATGGAGTTACCATAA+TGG | - | chr1.4:74690643-74690662 | MS.gene33980:intron | 40.0% | |
ACTCGTGACTTTCTATTGCA+GGG | + | chr1.4:74690591-74690610 | None:intergenic | 40.0% | |
AGATGGAGTTACCATAATGG+AGG | - | chr1.4:74690646-74690665 | MS.gene33980:intron | 40.0% | |
ATATCCATAAACACCCTGCA+AGG | + | chr1.4:74690113-74690132 | None:intergenic | 40.0% | |
ATCCTTCAGTAAACGACTCT+CGG | + | chr1.4:74691109-74691128 | None:intergenic | 40.0% | |
ATGCCTGTTACCAGATTGAT+AGG | - | chr1.4:74688448-74688467 | MS.gene33980:CDS | 40.0% | |
ATTGTTTCCTTCTCCTTGCA+GGG | - | chr1.4:74690097-74690116 | MS.gene33980:intron | 40.0% | |
CATCTGCTTGTCTTCTTCAA+GGG | + | chr1.4:74691268-74691287 | None:intergenic | 40.0% | |
CATTTATCGGTACAAGACTG+AGG | - | chr1.4:74690303-74690322 | MS.gene33980:intron | 40.0% | |
CGGTTCACCATTCATCAAAA+AGG | + | chr1.4:74689090-74689109 | None:intergenic | 40.0% | |
CGTGCTTACACAAAATCTAC+AGG | - | chr1.4:74689326-74689345 | MS.gene33980:CDS | 40.0% | |
GACAGAGATCATTTGATGAG+AGG | - | chr1.4:74687574-74687593 | MS.gene33980:CDS | 40.0% | |
GATAGGTTTAAACTTGGGGA+AGG | - | chr1.4:74689170-74689189 | MS.gene33980:intron | 40.0% | |
GCTTATTTGAGCTTCTCTAC+TGG | + | chr1.4:74689899-74689918 | None:intergenic | 40.0% | |
GGATCTTATTGAAGCTCGTT+GGG | - | chr1.4:74690528-74690547 | MS.gene33980:intron | 40.0% | |
TACCAAACATGGTCTATTGC+GGG | - | chr1.4:74691189-74691208 | MS.gene33980:CDS | 40.0% | |
TACCCTGCAAAGAACAAAAC+AGG | - | chr1.4:74688794-74688813 | MS.gene33980:intron | 40.0% | |
TATCCATAGAAAGGATGAGG+GGG | + | chr1.4:74690892-74690911 | None:intergenic | 40.0% | |
TATTCAACTATGGGCCTGTT+TGG | - | chr1.4:74689659-74689678 | MS.gene33980:CDS | 40.0% | |
TCATCTGCTTGTCTTCTTCA+AGG | + | chr1.4:74691269-74691288 | None:intergenic | 40.0% | |
TCCATTATGGTAACTCCATC+TGG | + | chr1.4:74690647-74690666 | None:intergenic | 40.0% | |
TCCCTTAGTGAATTGTCTGT+TGG | - | chr1.4:74687597-74687616 | MS.gene33980:CDS | 40.0% | |
TCCGGATTCAATTCCAGAAT+GGG | - | chr1.4:74690363-74690382 | MS.gene33980:intron | 40.0% | |
TCGGATCAAAATCAGAGGTA+TGG | + | chr1.4:74690845-74690864 | None:intergenic | 40.0% | |
TGAACTCGGATCAAAATCAG+AGG | + | chr1.4:74690850-74690869 | None:intergenic | 40.0% | |
TGACTTTATGCTTGTCAGAG+GGG | - | chr1.4:74689402-74689421 | MS.gene33980:CDS | 40.0% | |
TGGAAGATATGTTGGGAAAC+AGG | - | chr1.4:74691158-74691177 | MS.gene33980:CDS | 40.0% | |
TGGATCTTATTGAAGCTCGT+TGG | - | chr1.4:74690527-74690546 | MS.gene33980:intron | 40.0% | |
TGTCTCTCTATGTTTAGCCT+CGG | + | chr1.4:74687558-74687577 | None:intergenic | 40.0% | |
TGTGATATTGCAGGTTCATG+TGG | + | chr1.4:74687968-74687987 | None:intergenic | 40.0% | |
TTAAAACCAGATCTTCCTCC+AGG | + | chr1.4:74687663-74687682 | None:intergenic | 40.0% | |
TTCCGGATTCAATTCCAGAA+TGG | - | chr1.4:74690362-74690381 | MS.gene33980:intron | 40.0% | |
! | AATTAGCTATCATTCTGGGG+AGG | + | chr1.4:74688289-74688308 | None:intergenic | 40.0% |
! | ACTTTGACATCTGGTGTCAA+CGG | + | chr1.4:74688102-74688121 | None:intergenic | 40.0% |
! | ATCAAAAAGGCTAGAGCACT+TGG | + | chr1.4:74689077-74689096 | None:intergenic | 40.0% |
! | ATGGTCTATTGCGGGTTATT+TGG | - | chr1.4:74691197-74691216 | MS.gene33980:CDS | 40.0% |
! | CCGAAGTTCAACTCGTATTT+TGG | - | chr1.4:74690045-74690064 | MS.gene33980:intron | 40.0% |
! | GAGGCCAAGTTGTTTGTTAA+AGG | + | chr1.4:74688721-74688740 | None:intergenic | 40.0% |
! | GTTACCATAATGGAGGATCT+TGG | - | chr1.4:74690653-74690672 | MS.gene33980:intron | 40.0% |
! | GTTTGGAGCTTATAGCACAA+GGG | - | chr1.4:74689693-74689712 | MS.gene33980:CDS | 40.0% |
! | TCAAAAAGGCTAGAGCACTT+GGG | + | chr1.4:74689076-74689095 | None:intergenic | 40.0% |
! | TGTTTGGAGCTTATAGCACA+AGG | - | chr1.4:74689692-74689711 | MS.gene33980:CDS | 40.0% |
! | TTTGACTTTATGCCAACACG+TGG | - | chr1.4:74690388-74690407 | MS.gene33980:intron | 40.0% |
! | TTTTCCTAACGGCATCATGA+AGG | + | chr1.4:74689220-74689239 | None:intergenic | 40.0% |
!! | ACCCATTCTGGAATTGAATC+CGG | + | chr1.4:74690367-74690386 | None:intergenic | 40.0% |
!! | AGATTTTCTGAGAGATTCCC+AGG | + | chr1.4:74687742-74687761 | None:intergenic | 40.0% |
!! | ATTGCACGTCTTGCTATTTG+TGG | + | chr1.4:74691078-74691097 | None:intergenic | 40.0% |
!! | GATTTTGGCGAAAGTGCAAT+CGG | - | chr1.4:74689257-74689276 | MS.gene33980:intron | 40.0% |
!! | GCTCTAGCCTTTTTGATGAA+TGG | - | chr1.4:74689080-74689099 | MS.gene33980:intron | 40.0% |
!! | TGAAGGACTTTGAAACTAGC+TGG | + | chr1.4:74689203-74689222 | None:intergenic | 40.0% |
!! | TGCCTGTTTTGTTCTTTGCA+GGG | + | chr1.4:74688799-74688818 | None:intergenic | 40.0% |
!! | TTGCCTGTTTTGTTCTTTGC+AGG | + | chr1.4:74688800-74688819 | None:intergenic | 40.0% |
AAATCATCCCCAAGTGTGAG+GGG | + | chr1.4:74691245-74691264 | None:intergenic | 45.0% | |
AAATGTCAGTCCAGCTCGAA+TGG | - | chr1.4:74690426-74690445 | MS.gene33980:intron | 45.0% | |
AACCCGCAATAGACCATGTT+TGG | + | chr1.4:74691194-74691213 | None:intergenic | 45.0% | |
AAGCAGCTGTTACAAGCCAT+AGG | + | chr1.4:74691038-74691057 | None:intergenic | 45.0% | |
AAGTCCTTCATGATGCCGTT+AGG | - | chr1.4:74689213-74689232 | MS.gene33980:intron | 45.0% | |
AGAGCAGTCAATGGCAATCA+TGG | - | chr1.4:74690507-74690526 | MS.gene33980:intron | 45.0% | |
AGCAGTATCTTGCTTGAGCA+TGG | + | chr1.4:74690185-74690204 | None:intergenic | 45.0% | |
AGCTGTTGATCATCAAGCTG+AGG | - | chr1.4:74687800-74687819 | MS.gene33980:intron | 45.0% | |
ATAAACACCCTGCAAGGAGA+AGG | + | chr1.4:74690107-74690126 | None:intergenic | 45.0% | |
ATCTCACTCGTTTGCTTGAC+AGG | - | chr1.4:74687532-74687551 | MS.gene33980:CDS | 45.0% | |
CACTCGTGACTTTCTATTGC+AGG | + | chr1.4:74690592-74690611 | None:intergenic | 45.0% | |
CATCGAAAATCCATTCGAGC+TGG | + | chr1.4:74690439-74690458 | None:intergenic | 45.0% | |
CTCAAGCAAGATACTGCTGA+CGG | - | chr1.4:74690187-74690206 | MS.gene33980:intron | 45.0% | |
CTGCAATAGAAAGTCACGAG+TGG | - | chr1.4:74690590-74690609 | MS.gene33980:intron | 45.0% | |
CTTTACACAGTCGTGGACAT+CGG | - | chr1.4:74688989-74689008 | MS.gene33980:intron | 45.0% | |
GAAATCATCCCCAAGTGTGA+GGG | + | chr1.4:74691246-74691265 | None:intergenic | 45.0% | |
GACATATGGCCTGTTTGGAT+TGG | + | chr1.4:74689921-74689940 | None:intergenic | 45.0% | |
GAGAGTCGTTTACTGAAGGA+TGG | - | chr1.4:74691108-74691127 | MS.gene33980:CDS | 45.0% | |
GATGAGAGAAAGGGAAAACC+TGG | + | chr1.4:74690679-74690698 | None:intergenic | 45.0% | |
GATTGTTTCCTTCTCCTTGC+AGG | - | chr1.4:74690096-74690115 | MS.gene33980:intron | 45.0% | |
GCACAAGGGCTTATCATGTT+TGG | - | chr1.4:74689707-74689726 | MS.gene33980:CDS | 45.0% | |
GGATGGCCTGAATATTACGA+TGG | - | chr1.4:74691129-74691148 | MS.gene33980:CDS | 45.0% | |
GGTGGGAGAAAAGAGTAGAT+AGG | - | chr1.4:74689153-74689172 | MS.gene33980:intron | 45.0% | |
GTCGTTTACTGAAGGATGGA+TGG | - | chr1.4:74691112-74691131 | MS.gene33980:CDS | 45.0% | |
TATGACAATTACTCGCCTGG+AGG | - | chr1.4:74687645-74687664 | MS.gene33980:CDS | 45.0% | |
TGGATGGGCATATGGGAATT+AGG | - | chr1.4:74687466-74687485 | MS.gene33980:CDS | 45.0% | |
TTTCCCCCTCATCCTTTCTA+TGG | - | chr1.4:74690886-74690905 | MS.gene33980:intron | 45.0% | |
! | ATGATTGCCATTGACTGCTC+TGG | + | chr1.4:74690508-74690527 | None:intergenic | 45.0% |
! | CAACAGGTGCACCTCTAAAA+TGG | + | chr1.4:74687770-74687789 | None:intergenic | 45.0% |
! | GTCTATTGCGGGTTATTTGG+TGG | - | chr1.4:74691200-74691219 | MS.gene33980:CDS | 45.0% |
! | TTCTCCTTGCAGGGTGTTTA+TGG | - | chr1.4:74690106-74690125 | MS.gene33980:intron | 45.0% |
!! | CAGCTCGAATGGATTTTCGA+TGG | - | chr1.4:74690437-74690456 | MS.gene33980:intron | 45.0% |
!! | CATTTTAGAGGTGCACCTGT+TGG | - | chr1.4:74687768-74687787 | MS.gene33980:intron | 45.0% |
ACACGTGGTGGCTACTTCAT+TGG | - | chr1.4:74690403-74690422 | MS.gene33980:intron | 50.0% | |
ACAGCTGCAATTGTGCCAAC+AGG | + | chr1.4:74687786-74687805 | None:intergenic | 50.0% | |
ACAGCTGCTTGCATCAAGAC+AGG | - | chr1.4:74691048-74691067 | MS.gene33980:CDS | 50.0% | |
AGACACTACATCTTCAGGGG+TGG | - | chr1.4:74689135-74689154 | MS.gene33980:intron | 50.0% | |
AGCAACTCCAGAGCAGTCAA+TGG | - | chr1.4:74690498-74690517 | MS.gene33980:intron | 50.0% | |
AGTTGCGAGCAGATGAAGCA+GGG | + | chr1.4:74687689-74687708 | None:intergenic | 50.0% | |
ATGAAGTAGCCACCACGTGT+TGG | + | chr1.4:74690403-74690422 | None:intergenic | 50.0% | |
CACCAGAATCCAGAGTCAAC+AGG | + | chr1.4:74689293-74689312 | None:intergenic | 50.0% | |
CACGAGTGGCGAATTGTTAC+TGG | - | chr1.4:74690604-74690623 | MS.gene33980:intron | 50.0% | |
CAGCTGCTTGCATCAAGACA+GGG | - | chr1.4:74691049-74691068 | MS.gene33980:CDS | 50.0% | |
CCAACTCTGCTTTGTGCTGA+TGG | - | chr1.4:74689437-74689456 | MS.gene33980:CDS | 50.0% | |
CCATCAGCACAAAGCAGAGT+TGG | + | chr1.4:74689440-74689459 | None:intergenic | 50.0% | |
CGATGTCCACGACTGTGTAA+AGG | + | chr1.4:74688991-74689010 | None:intergenic | 50.0% | |
CTGGCCAAGATCCTCCATTA+TGG | + | chr1.4:74690660-74690679 | None:intergenic | 50.0% | |
GACACTACATCTTCAGGGGT+GGG | - | chr1.4:74689136-74689155 | MS.gene33980:intron | 50.0% | |
GACTTTATGCCAACACGTGG+TGG | - | chr1.4:74690391-74690410 | MS.gene33980:intron | 50.0% | |
GCAAGATACTGCTGACGGAA+AGG | - | chr1.4:74690192-74690211 | MS.gene33980:intron | 50.0% | |
GGAAATCATCCCCAAGTGTG+AGG | + | chr1.4:74691247-74691266 | None:intergenic | 50.0% | |
GTGTGCGTTACCAGATTGCT+AGG | - | chr1.4:74688374-74688393 | MS.gene33980:CDS | 50.0% | |
GTTGCCTCCACAAAGTACAG+TGG | - | chr1.4:74688952-74688971 | MS.gene33980:intron | 50.0% | |
TCAGTGTTCGATGGCTGAGA+TGG | - | chr1.4:74687500-74687519 | MS.gene33980:CDS | 50.0% | |
TCTGAGAGATTCCCAGGCAT+CGG | + | chr1.4:74687736-74687755 | None:intergenic | 50.0% | |
TGAAGCTCGTTGGGATGAGT+TGG | - | chr1.4:74690537-74690556 | MS.gene33980:intron | 50.0% | |
TGCCGAGAGTCGTTTACTGA+AGG | - | chr1.4:74691104-74691123 | MS.gene33980:CDS | 50.0% | |
TGGTCCACTGTACTTTGTGG+AGG | + | chr1.4:74688959-74688978 | None:intergenic | 50.0% | |
! | CATAATGGAGGATCTTGGCC+AGG | - | chr1.4:74690658-74690677 | MS.gene33980:intron | 50.0% |
! | TAGCTATCATTCTGGGGAGG+AGG | + | chr1.4:74688286-74688305 | None:intergenic | 50.0% |
! | TTTGGTGGCCAAGATGATGC+TGG | - | chr1.4:74691215-74691234 | MS.gene33980:CDS | 50.0% |
!! | AGAGTTGCTCCTGTTGACTC+TGG | - | chr1.4:74689281-74689300 | MS.gene33980:intron | 50.0% |
!! | CTCCTGTTGACTCTGGATTC+TGG | - | chr1.4:74689288-74689307 | MS.gene33980:intron | 50.0% |
!! | CTGTTGACTCTGGATTCTGG+TGG | - | chr1.4:74689291-74689310 | MS.gene33980:intron | 50.0% |
!!! | CTGTTGGTTTTGCAAGGGCT+GGG | - | chr1.4:74687613-74687632 | MS.gene33980:CDS | 50.0% |
!!! | TCTGTTGGTTTTGCAAGGGC+TGG | - | chr1.4:74687612-74687631 | MS.gene33980:CDS | 50.0% |
ATCCAATGGTTGCCGATGCC+TGG | - | chr1.4:74687721-74687740 | MS.gene33980:CDS | 55.0% | |
CTCGTTTGAGCCGCATCCAA+TGG | - | chr1.4:74687707-74687726 | MS.gene33980:CDS | 55.0% | |
GAGTTGCGAGCAGATGAAGC+AGG | + | chr1.4:74687690-74687709 | None:intergenic | 55.0% | |
GTTGCGAGCAGATGAAGCAG+GGG | + | chr1.4:74687688-74687707 | None:intergenic | 55.0% | |
TACTCGCCTGGAGGAAGATC+TGG | - | chr1.4:74687654-74687673 | MS.gene33980:CDS | 55.0% | |
TCCAATGGTTGCCGATGCCT+GGG | - | chr1.4:74687722-74687741 | MS.gene33980:CDS | 55.0% | |
! | AGTCGGCTCTCAGTGTTCGA+TGG | - | chr1.4:74687491-74687510 | MS.gene33980:CDS | 55.0% |
! | GCATCGGCAACCATTGGATG+CGG | + | chr1.4:74687720-74687739 | None:intergenic | 55.0% |
! | TGTGAGTTGAGAGCACGTGC+TGG | - | chr1.4:74688525-74688544 | MS.gene33980:CDS | 55.0% |
!! | GCTCGTTGGGATGAGTTGGT+TGG | - | chr1.4:74690541-74690560 | MS.gene33980:intron | 55.0% |
CTCGTTTGCTTGACAGGCCG+AGG | - | chr1.4:74687538-74687557 | MS.gene33980:CDS | 60.0% | |
CTGGAGGACCCCTCACACTT+GGG | - | chr1.4:74691234-74691253 | MS.gene33980:CDS | 60.0% | |
GGGGTCCTCCAGCATCATCT+TGG | + | chr1.4:74691226-74691245 | None:intergenic | 60.0% | |
GGTGGCCAAGATGATGCTGG+AGG | - | chr1.4:74691218-74691237 | MS.gene33980:CDS | 60.0% | |
TCTCGGGTGCAGTGCTCCTA+TGG | - | chr1.4:74691019-74691038 | MS.gene33980:CDS | 60.0% | |
TGGAGGACCCCTCACACTTG+GGG | - | chr1.4:74691235-74691254 | MS.gene33980:CDS | 60.0% | |
!! | TCCCAGGCATCGGCAACCAT+TGG | + | chr1.4:74687726-74687745 | None:intergenic | 60.0% |
GCTGGAGGACCCCTCACACT+TGG | - | chr1.4:74691233-74691252 | MS.gene33980:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 74687465 | 74691326 | 74687465 | ID=MS.gene33980 |
chr1.4 | mRNA | 74687465 | 74691326 | 74687465 | ID=MS.gene33980.t1;Parent=MS.gene33980 |
chr1.4 | exon | 74690949 | 74691326 | 74690949 | ID=MS.gene33980.t1.exon1;Parent=MS.gene33980.t1 |
chr1.4 | CDS | 74690949 | 74691326 | 74690949 | ID=cds.MS.gene33980.t1;Parent=MS.gene33980.t1 |
chr1.4 | exon | 74689307 | 74689738 | 74689307 | ID=MS.gene33980.t1.exon2;Parent=MS.gene33980.t1 |
chr1.4 | CDS | 74689307 | 74689738 | 74689307 | ID=cds.MS.gene33980.t1;Parent=MS.gene33980.t1 |
chr1.4 | exon | 74688112 | 74688673 | 74688112 | ID=MS.gene33980.t1.exon3;Parent=MS.gene33980.t1 |
chr1.4 | CDS | 74688112 | 74688673 | 74688112 | ID=cds.MS.gene33980.t1;Parent=MS.gene33980.t1 |
chr1.4 | exon | 74687465 | 74687760 | 74687465 | ID=MS.gene33980.t1.exon4;Parent=MS.gene33980.t1 |
chr1.4 | CDS | 74687465 | 74687760 | 74687465 | ID=cds.MS.gene33980.t1;Parent=MS.gene33980.t1 |
Gene Sequence |
Protein sequence |