Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007170.t1 | XP_013450132.1 | 94.3 | 877 | 49 | 1 | 1 | 876 | 1 | 877 | 0.00E+00 | 1592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007170.t1 | A0A072UEC0 | 94.3 | 877 | 49 | 1 | 1 | 876 | 1 | 877 | 0.0e+00 | 1592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007170 | MS.gene034823 | PPI |
| MS.gene025610 | MS.gene007170 | PPI |
| MS.gene007170 | MS.gene025610 | PPI |
| MS.gene065719 | MS.gene007170 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007170.t1 | MTR_7g105340 | 94.299 | 877 | 49 | 1 | 1 | 876 | 1 | 877 | 0.0 | 1682 |
| MS.gene007170.t1 | MTR_7g105340 | 93.720 | 828 | 51 | 1 | 1 | 827 | 1 | 828 | 0.0 | 1574 |
| MS.gene007170.t1 | MTR_7g105340 | 94.133 | 767 | 44 | 1 | 1 | 766 | 1 | 767 | 0.0 | 1464 |
| MS.gene007170.t1 | MTR_7g105340 | 93.787 | 676 | 41 | 1 | 1 | 675 | 1 | 676 | 0.0 | 1282 |
| MS.gene007170.t1 | MTR_1g058390 | 65.639 | 908 | 274 | 11 | 1 | 876 | 1 | 902 | 0.0 | 1119 |
| MS.gene007170.t1 | MTR_1g058390 | 68.841 | 828 | 223 | 9 | 80 | 876 | 3 | 826 | 0.0 | 1098 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007170.t1 | AT3G11560 | 55.692 | 817 | 312 | 10 | 79 | 867 | 64 | 858 | 0.0 | 860 |
| MS.gene007170.t1 | AT3G11560 | 55.692 | 817 | 312 | 10 | 79 | 867 | 64 | 858 | 0.0 | 860 |
| MS.gene007170.t1 | AT3G11560 | 55.692 | 817 | 312 | 10 | 79 | 867 | 64 | 858 | 0.0 | 860 |
| MS.gene007170.t1 | AT5G06220 | 50.939 | 905 | 389 | 12 | 1 | 876 | 1 | 879 | 0.0 | 831 |
| MS.gene007170.t1 | AT5G06220 | 50.216 | 926 | 389 | 14 | 1 | 876 | 1 | 904 | 0.0 | 813 |
| MS.gene007170.t1 | AT5G06220 | 47.730 | 903 | 369 | 12 | 1 | 876 | 1 | 827 | 0.0 | 737 |
| MS.gene007170.t1 | AT3G11560 | 57.979 | 564 | 206 | 5 | 79 | 629 | 64 | 609 | 0.0 | 641 |
| MS.gene007170.t1 | AT3G11560 | 57.979 | 564 | 206 | 5 | 79 | 629 | 64 | 609 | 0.0 | 641 |
Find 187 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAGATTTAGCAATATT+TGG | 0.120640 | 7.2:-7911010 | MS.gene007170:CDS |
| GAACTATAGGCTTGGCTTAT+AGG | 0.191511 | 7.2:+7911617 | None:intergenic |
| CGGTGGATTTCACTGGATTC+TGG | 0.204838 | 7.2:+7906287 | None:intergenic |
| GTCCACTAGAGGTTGCTTTC+TGG | 0.209871 | 7.2:-7911511 | MS.gene007170:CDS |
| CTGAAGATATCCAACCTTTC+TGG | 0.225744 | 7.2:+7904895 | None:intergenic |
| CTAGCTGCTTTCACATTAGA+AGG | 0.231471 | 7.2:+7910460 | None:intergenic |
| AGAGACTTTCTTGTTCATTT+TGG | 0.239017 | 7.2:-7911572 | MS.gene007170:CDS |
| TACTCAATAAACAGGATATT+TGG | 0.245695 | 7.2:-7905497 | MS.gene007170:intron |
| TGGGGAACTGCTTCAGCATT+TGG | 0.255544 | 7.2:+7910547 | None:intergenic |
| GCCAAGCCTATAGTTCTATT+AGG | 0.269402 | 7.2:-7911610 | MS.gene007170:CDS |
| CAATGCATCATGCTTTGTTT+TGG | 0.286376 | 7.2:-7915106 | MS.gene007170:CDS |
| CACTAGATGTTTGCTCTCAT+TGG | 0.292783 | 7.2:-7910522 | MS.gene007170:CDS |
| TACCTTATAAAATCTTCAAC+TGG | 0.295690 | 7.2:+7910917 | None:intergenic |
| CCAAAGCATACGAGTGGTTT+TGG | 0.298136 | 7.2:-7912028 | MS.gene007170:CDS |
| ATCCAGTTTACTTCGGCTTT+CGG | 0.304846 | 7.2:-7912096 | MS.gene007170:intron |
| TTTGAATAGCGATAATGTTT+TGG | 0.316425 | 7.2:-7915081 | MS.gene007170:CDS |
| AAGTGTCATCTTCTCTTTCT+CGG | 0.318578 | 7.2:+7905395 | None:intergenic |
| TTTGGGTTCTTTATTGCTTT+AGG | 0.320137 | 7.2:-7910992 | MS.gene007170:CDS |
| TCCACTAGAGGTTGCTTTCT+GGG | 0.322241 | 7.2:-7911510 | MS.gene007170:CDS |
| TTTGTCTCTCCCATCACTTT+GGG | 0.325358 | 7.2:+7913849 | None:intergenic |
| GTACAACTGATATGAACTTA+TGG | 0.328813 | 7.2:+7910754 | None:intergenic |
| TATTCTTCCTTTGCACCAAC+TGG | 0.337708 | 7.2:+7908351 | None:intergenic |
| TGGTAGTTTGATGGACTTGC+TGG | 0.341304 | 7.2:-7911651 | MS.gene007170:CDS |
| CTTTGCACCAACTGGATTGT+GGG | 0.344766 | 7.2:+7908359 | None:intergenic |
| GCAGCTAGATATTTGTCAAT+AGG | 0.350504 | 7.2:-7910445 | MS.gene007170:CDS |
| ATTCACTTGCAGCTTGCAAC+AGG | 0.352047 | 7.2:+7913878 | None:intergenic |
| CCAAGCCTATAGTTCTATTA+GGG | 0.356256 | 7.2:-7911609 | MS.gene007170:CDS |
| GAAAGCAGCCTATTCTGTTC+TGG | 0.356848 | 7.2:-7908865 | MS.gene007170:CDS |
| CAGATTCATCGGTAAATCTC+AGG | 0.359385 | 7.2:-7907834 | MS.gene007170:CDS |
| TTCCTACAGGTTACTGCTGT+TGG | 0.360472 | 7.2:-7905086 | MS.gene007170:intron |
| AAACAACATGCTACCTCCTT+TGG | 0.365873 | 7.2:+7913809 | None:intergenic |
| CCAAAACCACTCGTATGCTT+TGG | 0.369198 | 7.2:+7912028 | None:intergenic |
| TGTTACAGGTATCTTATTGT+AGG | 0.370082 | 7.2:-7910806 | MS.gene007170:intron |
| GTTTCTGTTGACAGTGTTGA+TGG | 0.377830 | 7.2:-7903349 | MS.gene007170:intron |
| CCTTTGCACCAACTGGATTG+TGG | 0.378554 | 7.2:+7908358 | None:intergenic |
| CAGCTAGATATTTGTCAATA+GGG | 0.378918 | 7.2:-7910444 | MS.gene007170:intron |
| AGAAAGATTTAGCAATATTT+GGG | 0.379240 | 7.2:-7911009 | MS.gene007170:CDS |
| TCCATGAGCACAGAGATAAC+TGG | 0.383045 | 7.2:-7911671 | MS.gene007170:CDS |
| TGTTGGAGTGCATGGAAGTT+AGG | 0.384969 | 7.2:-7910326 | MS.gene007170:CDS |
| GTTCTGTTAGCTCACTTCTC+AGG | 0.390193 | 7.2:+7906255 | None:intergenic |
| CAAAACCACTCGTATGCTTT+GGG | 0.394710 | 7.2:+7912029 | None:intergenic |
| ATGGCTTCAGTTATTCCAAT+TGG | 0.395677 | 7.2:-7905354 | MS.gene007170:CDS |
| TTTGTAGTGCTGGTGATTCC+AGG | 0.396360 | 7.2:+7910607 | None:intergenic |
| GGAGAAGACACTGTCATATC+AGG | 0.397707 | 7.2:-7914745 | MS.gene007170:intron |
| TTTAGCAAGCTAAAGGAAAC+AGG | 0.404652 | 7.2:-7905652 | MS.gene007170:CDS |
| AGAATGCTAATGTAGATAGA+AGG | 0.404722 | 7.2:-7908308 | MS.gene007170:CDS |
| TTTACAGGAGTTGGTGCCTA+TGG | 0.413970 | 7.2:-7905758 | MS.gene007170:intron |
| AGAGATAACTGGTAGTTTGA+TGG | 0.414550 | 7.2:-7911660 | MS.gene007170:CDS |
| AGAAGCATTAAAACTCCAAT+TGG | 0.414850 | 7.2:+7905339 | None:intergenic |
| TCCTTCATTAATAAGTTTGA+AGG | 0.416263 | 7.2:-7911978 | MS.gene007170:CDS |
| GATTGTCTTGAGAGCGAGTT+CGG | 0.416422 | 7.2:+7914810 | None:intergenic |
| GGTGGATTTCACTGGATTCT+GGG | 0.417123 | 7.2:+7906288 | None:intergenic |
| TATGCATCAAGTGCTAGTTC+TGG | 0.420338 | 7.2:-7908900 | MS.gene007170:CDS |
| ATCTTCCCTTGTTTAGTAGC+TGG | 0.428103 | 7.2:+7915147 | None:intergenic |
| TCCTACAGGTTACTGCTGTT+GGG | 0.428389 | 7.2:-7905085 | MS.gene007170:intron |
| TTCAAAGCGGTGGATTTCAC+TGG | 0.431856 | 7.2:+7906280 | None:intergenic |
| ACTCGCTCTCAAGACAATCT+TGG | 0.434791 | 7.2:-7914806 | MS.gene007170:CDS |
| CTGGTGATTCCAGGATAAAA+AGG | 0.437758 | 7.2:+7910616 | None:intergenic |
| AGAGCAAACATCTAGTGCTT+GGG | 0.439804 | 7.2:+7910528 | None:intergenic |
| AGCATCCCTAATAGAACTAT+AGG | 0.446449 | 7.2:+7911604 | None:intergenic |
| TGTTAGGCACAAGAAGTTGT+TGG | 0.446712 | 7.2:-7910343 | MS.gene007170:intron |
| GAACTTATGGATGAGAGCTC+AGG | 0.450166 | 7.2:+7910767 | None:intergenic |
| TATTTCCTTCCTTCTGAACC+TGG | 0.451158 | 7.2:+7905689 | None:intergenic |
| AAATGAGGGTGAAATTGAAT+AGG | 0.451529 | 7.2:-7914917 | MS.gene007170:CDS |
| ACCAGTTATCTCTGTGCTCA+TGG | 0.452486 | 7.2:+7911670 | None:intergenic |
| ACTTCGGCTTTCGGCTCCGC+TGG | 0.452672 | 7.2:-7912087 | MS.gene007170:CDS |
| CCCTTCAAACTTATTAATGA+AGG | 0.460147 | 7.2:+7911977 | None:intergenic |
| CAGAAAGGTTGGATATCTTC+AGG | 0.462414 | 7.2:-7904894 | MS.gene007170:CDS |
| GAGAACGCACCGCCATCTAT+AGG | 0.463601 | 7.2:-7903504 | MS.gene007170:CDS |
| CAAGAAGTTGTTGGAGTGCA+TGG | 0.465213 | 7.2:-7910334 | MS.gene007170:CDS |
| GTGAGTTACCTTCCTATAGA+TGG | 0.467415 | 7.2:+7903492 | None:intergenic |
| ATCTTTATATGATGCTGCTA+GGG | 0.468878 | 7.2:-7914856 | MS.gene007170:CDS |
| TGTTGGGCATGCAGCCATGT+TGG | 0.470203 | 7.2:-7905069 | MS.gene007170:CDS |
| TGGGTATAGAGTTATTGTTT+TGG | 0.474736 | 7.2:-7903329 | MS.gene007170:CDS |
| GTGTCTTCTCCCACGCAATT+CGG | 0.476768 | 7.2:+7914757 | None:intergenic |
| GAGAGCAAACATCTAGTGCT+TGG | 0.480605 | 7.2:+7910527 | None:intergenic |
| TTATTTGTATCTTCTGATGA+CGG | 0.481320 | 7.2:-7914999 | MS.gene007170:CDS |
| ATGAAGGAAGCCACTACAGC+TGG | 0.483272 | 7.2:+7911993 | None:intergenic |
| ATTGACACTGGTGCTGCAAT+GGG | 0.484090 | 7.2:-7905453 | MS.gene007170:CDS |
| TAAGAAGTATGTACCAGCTC+TGG | 0.489958 | 7.2:-7905039 | MS.gene007170:intron |
| CAACTGTCTACATCAAATGA+AGG | 0.490623 | 7.2:-7906320 | MS.gene007170:CDS |
| TTATTGATAAGGAGAGAATA+TGG | 0.495546 | 7.2:-7911457 | MS.gene007170:CDS |
| ACTGTCCCGCGGTTCAGAGA+TGG | 0.495607 | 7.2:+7903584 | None:intergenic |
| GACTTATGCACCAGAAAGGT+TGG | 0.496812 | 7.2:-7904905 | MS.gene007170:CDS |
| CCCTAATAGAACTATAGGCT+TGG | 0.500485 | 7.2:+7911609 | None:intergenic |
| TATAGTTCTATTAGGGATGC+TGG | 0.503156 | 7.2:-7911602 | MS.gene007170:CDS |
| TATTGACACTGGTGCTGCAA+TGG | 0.505462 | 7.2:-7905454 | MS.gene007170:CDS |
| GGAACTGCTTCAGCATTTGG+AGG | 0.506054 | 7.2:+7910550 | None:intergenic |
| GCAGGTGGTTTGTGAAGAGT+TGG | 0.506174 | 7.2:-7910647 | MS.gene007170:intron |
| ATTGCTGTAATCATTAAAGT+TGG | 0.509471 | 7.2:-7911725 | MS.gene007170:CDS |
| GTCGAAGATGATTTCTGTGA+CGG | 0.509789 | 7.2:-7914888 | MS.gene007170:CDS |
| CACTACAGCTGGAACTTGCT+TGG | 0.509911 | 7.2:+7912004 | None:intergenic |
| GTCATCTGAGCCCACGTCAA+TGG | 0.510085 | 7.2:+7904843 | None:intergenic |
| GAAACCGTTTGATAAAAGAA+AGG | 0.510199 | 7.2:+7910955 | None:intergenic |
| TTCTCAGGTGTTCAAAGCGG+TGG | 0.510621 | 7.2:+7906270 | None:intergenic |
| TGTAATCATTAAAGTTGGTC+CGG | 0.511469 | 7.2:-7911720 | MS.gene007170:CDS |
| CTGTCCCGCGGTTCAGAGAT+GGG | 0.511700 | 7.2:+7903585 | None:intergenic |
| GTTCAGAAAGGACTTTGTAC+AGG | 0.515507 | 7.2:-7907810 | MS.gene007170:intron |
| AATCTTTATATGATGCTGCT+AGG | 0.516424 | 7.2:-7914857 | MS.gene007170:CDS |
| TTGCTCTGAAAGATGCCTCC+AGG | 0.517749 | 7.2:+7908808 | None:intergenic |
| ATACAGACCTTGAGAAAATG+AGG | 0.517878 | 7.2:-7914932 | MS.gene007170:CDS |
| TGGTTTGTGAAGAGTTGGAT+TGG | 0.520806 | 7.2:-7910642 | MS.gene007170:CDS |
| CATCGACTTATGCACCAGAA+AGG | 0.521547 | 7.2:-7904909 | MS.gene007170:CDS |
| AGATTCATCGGTAAATCTCA+GGG | 0.524988 | 7.2:-7907833 | MS.gene007170:CDS |
| GAGTCGACGACGGCGAGAGC+GGG | 0.525315 | 7.2:+7903561 | None:intergenic |
| TTTGCACCAACTGGATTGTG+GGG | 0.526998 | 7.2:+7908360 | None:intergenic |
| CAAGCAAGTTCCAGCTGTAG+TGG | 0.528171 | 7.2:-7912003 | MS.gene007170:CDS |
| CTTCTTAATAGCAGCCAACA+TGG | 0.528491 | 7.2:+7905055 | None:intergenic |
| GCTAACAGAACTTGAGAGAC+AGG | 0.531554 | 7.2:-7906243 | MS.gene007170:CDS |
| TACATCAAATGAAGGTATTG+TGG | 0.532439 | 7.2:-7906312 | MS.gene007170:CDS |
| TCGAAGATGATTTCTGTGAC+GGG | 0.533820 | 7.2:-7914887 | MS.gene007170:CDS |
| AGATCTCTCAACTGTTCTGT+TGG | 0.543636 | 7.2:+7909255 | None:intergenic |
| TTTCTGTTGACAGTGTTGAT+GGG | 0.544440 | 7.2:-7903348 | MS.gene007170:intron |
| AACTTATGGATGAGAGCTCA+GGG | 0.545972 | 7.2:+7910768 | None:intergenic |
| CCACAATCCAGTTGGTGCAA+AGG | 0.547222 | 7.2:-7908358 | MS.gene007170:CDS |
| TGATGCTGGCGTTGTTCAGA+TGG | 0.550365 | 7.2:-7905713 | MS.gene007170:CDS |
| ACCCAGAAAGCAACCTCTAG+TGG | 0.553565 | 7.2:+7911509 | None:intergenic |
| GACAACATCAGAAAGTATAG+AGG | 0.554519 | 7.2:-7911426 | MS.gene007170:intron |
| TGGCGTTGTTCAGATGGTCC+AGG | 0.554568 | 7.2:-7905707 | MS.gene007170:CDS |
| TTCACTCAGGGAGTTGATGT+TGG | 0.557165 | 7.2:-7908384 | MS.gene007170:intron |
| TGTATTGATCCAGTTTACTT+CGG | 0.557422 | 7.2:-7912103 | MS.gene007170:intron |
| GTTGATTGTTACCTTAACGT+TGG | 0.557832 | 7.2:+7915433 | None:intergenic |
| TAGCTGCTTTCACATTAGAA+GGG | 0.557977 | 7.2:+7910461 | None:intergenic |
| AACTGAAGCCATGTCAGTCA+AGG | 0.564859 | 7.2:+7905365 | None:intergenic |
| TCAGATGGTCCAGGTTCAGA+AGG | 0.566222 | 7.2:-7905698 | MS.gene007170:CDS |
| GCTTTATAAAACACAGTACA+TGG | 0.567908 | 7.2:-7910492 | MS.gene007170:CDS |
| GGTGCGTTCTCTGACGGAGA+TGG | 0.568756 | 7.2:+7903516 | None:intergenic |
| TTAACGTTGGAAAATTGTTG+TGG | 0.570822 | 7.2:+7915446 | None:intergenic |
| CCTTCATTAATAAGTTTGAA+GGG | 0.571071 | 7.2:-7911977 | MS.gene007170:intron |
| GGAAGAAGTTGTGCTAAGAC+TGG | 0.571430 | 7.2:-7908943 | MS.gene007170:CDS |
| TAAATCTCAGGGGTTCAGAA+AGG | 0.571531 | 7.2:-7907822 | MS.gene007170:CDS |
| GCATTGCCAGCTACTAAACA+AGG | 0.572396 | 7.2:-7915153 | MS.gene007170:CDS |
| ATGTCAATGTGTTTGTCCAA+AGG | 0.574451 | 7.2:-7913825 | MS.gene007170:CDS |
| CAGAAGGTACATACCAGAGC+TGG | 0.576986 | 7.2:+7905026 | None:intergenic |
| GGTGAAATTGAATAGGCCAT+TGG | 0.580172 | 7.2:-7914910 | MS.gene007170:CDS |
| GATGGCGGTGCGTTCTCTGA+CGG | 0.582396 | 7.2:+7903510 | None:intergenic |
| TCAACGCAATGCAGACTCAA+AGG | 0.582414 | 7.2:-7915186 | MS.gene007170:CDS |
| ATATTATAGACCTAAAAGAA+AGG | 0.586547 | 7.2:-7915033 | MS.gene007170:CDS |
| CTTTCTGGTGCATAAGTCGA+TGG | 0.589378 | 7.2:+7904910 | None:intergenic |
| ATGGTCCAGGTTCAGAAGGA+AGG | 0.591065 | 7.2:-7905694 | MS.gene007170:CDS |
| GTGGCGTAGTTTAACCGCCA+TGG | 0.593483 | 7.2:+7915465 | None:intergenic |
| CGTTCTCTGACGGAGATGGT+AGG | 0.594905 | 7.2:+7903520 | None:intergenic |
| TGGTGTAGACCGAATTGCGT+GGG | 0.595867 | 7.2:-7914766 | MS.gene007170:CDS |
| ACCTTATAAAATCTTCAACT+GGG | 0.598080 | 7.2:+7910918 | None:intergenic |
| TAAGAGAACCTTGACTGACA+TGG | 0.599111 | 7.2:-7905373 | MS.gene007170:CDS |
| GAGTTGGTGCCTATGGATGA+TGG | 0.604756 | 7.2:-7905751 | MS.gene007170:CDS |
| CAGAAATCATCTTCGACCAA+TGG | 0.604894 | 7.2:+7914894 | None:intergenic |
| GCACACACTACAATATGTCC+CGG | 0.606968 | 7.2:+7904584 | None:intergenic |
| TGACGGCGTAAGTGTTAATG+AGG | 0.608382 | 7.2:-7914982 | MS.gene007170:CDS |
| AGTGTTAATGAGGACTCTGA+TGG | 0.610361 | 7.2:-7914972 | MS.gene007170:CDS |
| TTGCTTTAGGCAGAAGTACA+CGG | 0.611878 | 7.2:-7910979 | MS.gene007170:CDS |
| GAGCAAACATCTAGTGCTTG+GGG | 0.617768 | 7.2:+7910529 | None:intergenic |
| GGTAGGCGGTGCTGTAACGT+TGG | 0.618309 | 7.2:+7903537 | None:intergenic |
| AATAAACAGGATATTTGGCA+AGG | 0.619007 | 7.2:-7905492 | MS.gene007170:intron |
| CCTCGAGCTGCATTGTGCAG+AGG | 0.622898 | 7.2:-7911548 | MS.gene007170:CDS |
| TGCAGAGGTAAAATTGAGCA+AGG | 0.625726 | 7.2:-7911533 | MS.gene007170:CDS |
| GCAAATGTCAACCATTGACG+TGG | 0.627417 | 7.2:-7904854 | MS.gene007170:CDS |
| TTCACTTGCAGCTTGCAACA+GGG | 0.628085 | 7.2:+7913879 | None:intergenic |
| GCTCGATATAGTGATGATGC+TGG | 0.631943 | 7.2:-7905727 | MS.gene007170:CDS |
| GTGCATAAAAGTAAACAAGA+AGG | 0.632247 | 7.2:-7910574 | MS.gene007170:CDS |
| TTCATATCAGTTGTACGTGG+AGG | 0.632966 | 7.2:-7910747 | MS.gene007170:intron |
| TTGGTGTAGACCGAATTGCG+TGG | 0.633827 | 7.2:-7914767 | MS.gene007170:CDS |
| TCAATGTGTTTGTCCAAAGG+AGG | 0.638020 | 7.2:-7913822 | MS.gene007170:intron |
| ACGTGCTTATAAATCAGTGA+AGG | 0.639142 | 7.2:-7906213 | MS.gene007170:CDS |
| ACGCACCGCCATCTATAGGA+AGG | 0.641563 | 7.2:-7903500 | MS.gene007170:intron |
| TATCGAGCACCATCATCCAT+AGG | 0.642680 | 7.2:+7905742 | None:intergenic |
| GTTGGTCCCCACAATCCAGT+TGG | 0.643343 | 7.2:-7908366 | MS.gene007170:CDS |
| TGAGTCGACGACGGCGAGAG+CGG | 0.644113 | 7.2:+7903560 | None:intergenic |
| CACTTCTCAGGTGTTCAAAG+CGG | 0.649116 | 7.2:+7906267 | None:intergenic |
| TACAGACCTTGAGAAAATGA+GGG | 0.650005 | 7.2:-7914931 | MS.gene007170:CDS |
| CCTCTGCACAATGCAGCTCG+AGG | 0.651114 | 7.2:+7911548 | None:intergenic |
| GCGAGAGCGGGACTGTCCCG+CGG | 0.657569 | 7.2:+7903573 | None:intergenic |
| AATTGAGCAAGGTCCACTAG+AGG | 0.658397 | 7.2:-7911522 | MS.gene007170:CDS |
| CAACTTCTAGCTATTGACAC+TGG | 0.659417 | 7.2:-7905465 | MS.gene007170:CDS |
| AACAGCCCAAAGCATACGAG+TGG | 0.660241 | 7.2:-7912034 | MS.gene007170:CDS |
| TCTCTAATTAAACTCTCCAG+CGG | 0.662522 | 7.2:+7912071 | None:intergenic |
| TTATAAATCAGTGAAGGACG+AGG | 0.670981 | 7.2:-7906207 | MS.gene007170:intron |
| CAAATGTCAACCATTGACGT+GGG | 0.677873 | 7.2:-7904853 | MS.gene007170:CDS |
| TCTCTGACGGAGATGGTAGG+CGG | 0.681491 | 7.2:+7903523 | None:intergenic |
| AGTTACCTTCCTATAGATGG+CGG | 0.684661 | 7.2:+7903495 | None:intergenic |
| CATTGCCAGCTACTAAACAA+GGG | 0.690003 | 7.2:-7915152 | MS.gene007170:CDS |
| TCTGGGTAAACATTTCTCAG+AGG | 0.692174 | 7.2:-7911493 | MS.gene007170:CDS |
| TAACGTTGGTGAGTCGACGA+CGG | 0.695210 | 7.2:+7903551 | None:intergenic |
| GTGATGCAGAGATAAGACAT+TGG | 0.698821 | 7.2:-7909287 | MS.gene007170:intron |
| GATTCATCGGTAAATCTCAG+GGG | 0.699816 | 7.2:-7907832 | MS.gene007170:CDS |
| AAGTTCATATCAGTTGTACG+TGG | 0.710127 | 7.2:-7910750 | MS.gene007170:CDS |
| AAAAGAAGCTGAATTCCTGG+AGG | 0.737248 | 7.2:-7908823 | MS.gene007170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 7903324 | 7915485 | 7903324 | ID=MS.gene007170 |
| chr7.2 | mRNA | 7903324 | 7915485 | 7903324 | ID=MS.gene007170.t1;Parent=MS.gene007170 |
| chr7.2 | exon | 7915445 | 7915485 | 7915445 | ID=MS.gene007170.t1.exon1;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7915445 | 7915485 | 7915445 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7914746 | 7915235 | 7914746 | ID=MS.gene007170.t1.exon2;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7914746 | 7915235 | 7914746 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7913823 | 7913914 | 7913823 | ID=MS.gene007170.t1.exon3;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7913823 | 7913914 | 7913823 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7911978 | 7912112 | 7911978 | ID=MS.gene007170.t1.exon4;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7911978 | 7912112 | 7911978 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7911427 | 7911820 | 7911427 | ID=MS.gene007170.t1.exon5;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7911427 | 7911820 | 7911427 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7910920 | 7911038 | 7910920 | ID=MS.gene007170.t1.exon6;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7910920 | 7911038 | 7910920 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7910748 | 7910820 | 7910748 | ID=MS.gene007170.t1.exon7;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7910748 | 7910820 | 7910748 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7910445 | 7910665 | 7910445 | ID=MS.gene007170.t1.exon8;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7910445 | 7910665 | 7910445 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7910318 | 7910359 | 7910318 | ID=MS.gene007170.t1.exon9;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7910318 | 7910359 | 7910318 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7909213 | 7909300 | 7909213 | ID=MS.gene007170.t1.exon10;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7909213 | 7909300 | 7909213 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7908788 | 7908979 | 7908788 | ID=MS.gene007170.t1.exon11;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7908788 | 7908979 | 7908788 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7908303 | 7908397 | 7908303 | ID=MS.gene007170.t1.exon12;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7908303 | 7908397 | 7908303 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7907811 | 7907853 | 7907811 | ID=MS.gene007170.t1.exon13;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7907811 | 7907853 | 7907811 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7906208 | 7906354 | 7906208 | ID=MS.gene007170.t1.exon14;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7906208 | 7906354 | 7906208 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7905648 | 7905773 | 7905648 | ID=MS.gene007170.t1.exon15;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7905648 | 7905773 | 7905648 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7905335 | 7905505 | 7905335 | ID=MS.gene007170.t1.exon16;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7905335 | 7905505 | 7905335 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7905040 | 7905099 | 7905040 | ID=MS.gene007170.t1.exon17;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7905040 | 7905099 | 7905040 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7904840 | 7904935 | 7904840 | ID=MS.gene007170.t1.exon18;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7904840 | 7904935 | 7904840 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7904592 | 7904638 | 7904592 | ID=MS.gene007170.t1.exon19;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7904592 | 7904638 | 7904592 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7903501 | 7903614 | 7903501 | ID=MS.gene007170.t1.exon20;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7903501 | 7903614 | 7903501 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| chr7.2 | exon | 7903324 | 7903357 | 7903324 | ID=MS.gene007170.t1.exon21;Parent=MS.gene007170.t1 |
| chr7.2 | CDS | 7903324 | 7903357 | 7903324 | ID=cds.MS.gene007170.t1;Parent=MS.gene007170.t1 |
| Gene Sequence |
| Protein sequence |
