Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065719.t1 | XP_024633392.1 | 98 | 814 | 16 | 0 | 1 | 814 | 17 | 830 | 0.00E+00 | 1536.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065719.t1 | A0A072VJK4 | 98.0 | 814 | 16 | 0 | 1 | 814 | 93 | 906 | 0.0e+00 | 1536.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052188 | MS.gene065719 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene065719 | 0.843592 | 1.27E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene065719 | 0.808032 | 3.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065719 | MS.gene034823 | PPI |
| MS.gene065719 | MS.gene007170 | PPI |
| MS.gene065719 | MS.gene025610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065719.t1 | MTR_1g058390 | 98.034 | 814 | 16 | 0 | 1 | 814 | 93 | 906 | 0.0 | 1640 |
| MS.gene065719.t1 | MTR_1g058390 | 98.034 | 814 | 16 | 0 | 1 | 814 | 17 | 830 | 0.0 | 1637 |
| MS.gene065719.t1 | MTR_7g105340 | 68.911 | 817 | 220 | 8 | 1 | 813 | 94 | 880 | 0.0 | 1095 |
| MS.gene065719.t1 | MTR_7g105340 | 68.152 | 763 | 211 | 7 | 1 | 759 | 94 | 828 | 0.0 | 1008 |
| MS.gene065719.t1 | MTR_7g105340 | 67.521 | 702 | 196 | 7 | 1 | 698 | 94 | 767 | 0.0 | 916 |
| MS.gene065719.t1 | MTR_7g105340 | 70.266 | 602 | 162 | 6 | 1 | 598 | 94 | 682 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065719.t1 | AT3G11560 | 60.599 | 802 | 287 | 7 | 1 | 797 | 79 | 856 | 0.0 | 970 |
| MS.gene065719.t1 | AT3G11560 | 60.599 | 802 | 287 | 7 | 1 | 797 | 79 | 856 | 0.0 | 970 |
| MS.gene065719.t1 | AT3G11560 | 60.599 | 802 | 287 | 7 | 1 | 797 | 79 | 856 | 0.0 | 970 |
| MS.gene065719.t1 | AT5G06220 | 58.730 | 819 | 307 | 11 | 1 | 812 | 87 | 881 | 0.0 | 926 |
| MS.gene065719.t1 | AT5G06220 | 56.786 | 840 | 315 | 12 | 1 | 812 | 87 | 906 | 0.0 | 897 |
| MS.gene065719.t1 | AT5G06220 | 54.534 | 816 | 294 | 11 | 1 | 812 | 87 | 829 | 0.0 | 819 |
| MS.gene065719.t1 | AT3G11560 | 62.591 | 548 | 183 | 4 | 1 | 543 | 79 | 609 | 0.0 | 707 |
| MS.gene065719.t1 | AT3G11560 | 62.591 | 548 | 183 | 4 | 1 | 543 | 79 | 609 | 0.0 | 707 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTCCGGGTCGGGCTTTC+TGG | 0.093751 | 1.2:+45851884 | None:intergenic |
| CATTTGCTGTTTGCTCTTAT+TGG | 0.123771 | 1.2:-45855118 | MS.gene065719:CDS |
| GAGAAGGATTTGGCTATATT+TGG | 0.149892 | 1.2:-45855786 | MS.gene065719:CDS |
| GAATTATAAGCTTGACTTAC+AGG | 0.172414 | 1.2:+45856596 | None:intergenic |
| CTCAAGAGATCCAACCTTTC+TGG | 0.181342 | 1.2:+45848286 | None:intergenic |
| TTTATTACAGGTATCTTATT+GGG | 0.237944 | 1.2:-45855402 | MS.gene065719:intron |
| ATTTATTACAGGTATCTTAT+TGG | 0.238493 | 1.2:-45855403 | MS.gene065719:intron |
| AGAGAATTTCTTGTACATTT+TGG | 0.238907 | 1.2:-45856551 | MS.gene065719:CDS |
| TGGGTCACTGCTTCTGCATT+TGG | 0.242483 | 1.2:+45855143 | None:intergenic |
| TCTGCATTTGGAGGACCTTC+TGG | 0.248549 | 1.2:+45855155 | None:intergenic |
| TTCACTTGCAGCATATAATA+AGG | 0.269650 | 1.2:+45857692 | None:intergenic |
| GAAGGATTTCATTGGGTTCT+TGG | 0.270749 | 1.2:+45850425 | None:intergenic |
| TTTGGATTCTTTATTGCTTT+AGG | 0.283500 | 1.2:-45855768 | MS.gene065719:CDS |
| TTGGAAAATCTCGTGGATTC+TGG | 0.286568 | 1.2:-45851929 | MS.gene065719:CDS |
| ATCCACGTGATGACGATTTA+TGG | 0.292434 | 1.2:+45859989 | None:intergenic |
| AAGTGCTTTCTTCTCCTTCT+CGG | 0.302471 | 1.2:+45849457 | None:intergenic |
| CTGACTGATAGGCACTTCTT+TGG | 0.308188 | 1.2:+45850356 | None:intergenic |
| GGTCAATTCATCACCTATTA+AGG | 0.311339 | 1.2:+45849478 | None:intergenic |
| GGTTCCGGGTCGGGCTTTCT+GGG | 0.326767 | 1.2:+45851885 | None:intergenic |
| TAAGAAAGAAGCTGAATTCC+TGG | 0.342804 | 1.2:-45853286 | MS.gene065719:CDS |
| TCCATGAGCACTGAGATAAC+TGG | 0.352935 | 1.2:-45856650 | MS.gene065719:CDS |
| CTGAAGTGTACGAATGGTTT+TGG | 0.355223 | 1.2:-45856992 | MS.gene065719:CDS |
| CTCAAAGCGAAGGATTTCAT+TGG | 0.379425 | 1.2:+45850417 | None:intergenic |
| GGGTCGGGCTTTCTGGGTAT+AGG | 0.385827 | 1.2:+45851891 | None:intergenic |
| TCAAGCTTATAATTCTATAA+AGG | 0.386303 | 1.2:-45856588 | MS.gene065719:CDS |
| TTGGTCAAAAGGACCTTAAT+AGG | 0.388491 | 1.2:-45849491 | MS.gene065719:CDS |
| ATACAATTGATATGAACTAA+TGG | 0.391551 | 1.2:+45855348 | None:intergenic |
| TGGTCCACAACCCCTACATT+TGG | 0.398293 | 1.2:+45850445 | None:intergenic |
| TGAGCATCCACATCAGGTTC+CGG | 0.399986 | 1.2:+45851870 | None:intergenic |
| TGTTAGGCACAACAAGTTGA+TGG | 0.400862 | 1.2:-45854936 | MS.gene065719:intron |
| AAGTACACGAACATTTCTTT+TGG | 0.405597 | 1.2:-45855742 | MS.gene065719:CDS |
| TTTGTGATGCTGGTGATTCC+CGG | 0.407876 | 1.2:+45855200 | None:intergenic |
| TCCACATCAGGTTCCGGGTC+GGG | 0.407937 | 1.2:+45851876 | None:intergenic |
| CTGCCTCGGGTTTGGTCAAA+AGG | 0.408786 | 1.2:-45849502 | MS.gene065719:CDS |
| TGAGATAACTGGTAGTTTGA+TGG | 0.414550 | 1.2:-45856639 | MS.gene065719:CDS |
| GTCACTGCTTCTGCATTTGG+AGG | 0.415112 | 1.2:+45855146 | None:intergenic |
| AACTGAAGCCATGTCAGTTA+AGG | 0.424587 | 1.2:+45849427 | None:intergenic |
| CATGTGTCAAGCTCTAGTTC+TGG | 0.429376 | 1.2:-45853360 | MS.gene065719:CDS |
| TATTGATGTTGGTGCTGCCT+CGG | 0.429403 | 1.2:-45849516 | MS.gene065719:CDS |
| TTCGTACACTTCAGGCTGTT+TGG | 0.429694 | 1.2:+45857001 | None:intergenic |
| CTGGTGATTCCCGGATAAAA+AGG | 0.430228 | 1.2:+45855209 | None:intergenic |
| CACCGGTTGGTGAGGAGGAC+AGG | 0.430373 | 1.2:-45852138 | MS.gene065719:CDS |
| TTTGACAAACTAAAAGAAAC+GGG | 0.431505 | 1.2:-45849787 | MS.gene065719:CDS |
| ATGCCTTCACCCATGCGGTT+TGG | 0.433558 | 1.2:+45859935 | None:intergenic |
| TGTTGGTGCTGCCTCGGGTT+TGG | 0.433951 | 1.2:-45849510 | MS.gene065719:CDS |
| AGCTGATGGAACTTGAGAAA+AGG | 0.434158 | 1.2:-45850381 | MS.gene065719:CDS |
| TTCACACAGGTTACTGCCGT+TGG | 0.436149 | 1.2:-45848483 | MS.gene065719:intron |
| GAGCATCCACATCAGGTTCC+GGG | 0.438761 | 1.2:+45851871 | None:intergenic |
| AAATCTTCAATTGGATCATC+GGG | 0.443539 | 1.2:+45855702 | None:intergenic |
| ATTGATGTTGGTGCTGCCTC+GGG | 0.446845 | 1.2:-45849515 | MS.gene065719:CDS |
| CAAAACCATTCGTACACTTC+AGG | 0.449478 | 1.2:+45856993 | None:intergenic |
| TCCTTTGTTAATAAGTTTGA+AGG | 0.449982 | 1.2:-45856942 | MS.gene065719:CDS |
| AAGAGCAAACAGCAAATGCT+TGG | 0.455991 | 1.2:+45855123 | None:intergenic |
| GAAATCTTCAATTGGATCAT+CGG | 0.456727 | 1.2:+45855701 | None:intergenic |
| TTCTATCTCTGCTATCATCT+CGG | 0.457753 | 1.2:+45857661 | None:intergenic |
| CAACCTTTCTGGTGCGTAAG+TGG | 0.459271 | 1.2:+45848297 | None:intergenic |
| CAACTTCTTGCTATTGATGT+TGG | 0.459877 | 1.2:-45849527 | MS.gene065719:CDS |
| TGTAGATTCAGATGATGAAA+TGG | 0.461113 | 1.2:-45848221 | MS.gene065719:CDS |
| ATCCAATTGAAGATTTCATC+AGG | 0.465735 | 1.2:-45855695 | MS.gene065719:intron |
| GCTAAGGCTATCTGCTCCCT+TGG | 0.466582 | 1.2:-45857051 | MS.gene065719:CDS |
| GAAAGCAGCCTGTTCTGACT+TGG | 0.466824 | 1.2:-45853325 | MS.gene065719:CDS |
| TCACACAGGTTACTGCCGTT+GGG | 0.466862 | 1.2:-45848482 | MS.gene065719:intron |
| ACCAGTTATCTCAGTGCTCA+TGG | 0.469402 | 1.2:+45856649 | None:intergenic |
| GTTAATAAGTTTGAAGGGGA+CGG | 0.473421 | 1.2:-45856936 | MS.gene065719:CDS |
| ACAAAGGACGTCACTACAGC+TGG | 0.474919 | 1.2:+45856957 | None:intergenic |
| AACCTGTCCTCCTCACCAAC+CGG | 0.476504 | 1.2:+45852136 | None:intergenic |
| GGTTCAGAAGCAGCTGCAGC+AGG | 0.477118 | 1.2:-45856459 | MS.gene065719:CDS |
| TCAAAGCGAAGGATTTCATT+GGG | 0.478454 | 1.2:+45850418 | None:intergenic |
| AACAGCCTGCACCAAATGTA+GGG | 0.479756 | 1.2:-45850456 | MS.gene065719:CDS |
| TACCTGATGAAATCTTCAAT+TGG | 0.481210 | 1.2:+45855693 | None:intergenic |
| AATCGTCATCACGTGGATCC+TGG | 0.482075 | 1.2:-45859984 | MS.gene065719:CDS |
| ATTGCTGCAATTGCTAAACT+TGG | 0.487614 | 1.2:-45856704 | MS.gene065719:CDS |
| TCTATCTCTGCTATCATCTC+GGG | 0.488428 | 1.2:+45857662 | None:intergenic |
| TGCACCAAATGTAGGGGTTG+TGG | 0.488543 | 1.2:-45850449 | MS.gene065719:CDS |
| CACTTACGCACCAGAAAGGT+TGG | 0.490030 | 1.2:-45848296 | MS.gene065719:CDS |
| TGCAATTGCTAAACTTGGCC+CGG | 0.494454 | 1.2:-45856699 | MS.gene065719:CDS |
| GCTGATGGAACTTGAGAAAA+GGG | 0.494748 | 1.2:-45850380 | MS.gene065719:CDS |
| ATCATCTGAATCTACATCAC+TGG | 0.500007 | 1.2:+45848228 | None:intergenic |
| TAAAGGTGGACAGGAGCAAA+AGG | 0.500329 | 1.2:-45852081 | MS.gene065719:intron |
| TAGTTTGTGAAGAGCTGGAT+TGG | 0.501881 | 1.2:-45855235 | MS.gene065719:CDS |
| AAGCTTTATATGATGCAGCC+AGG | 0.502582 | 1.2:-45860035 | MS.gene065719:CDS |
| ATGGAGTGCATGGATGAACT+TGG | 0.503782 | 1.2:-45854917 | MS.gene065719:CDS |
| AGGAGGACAGGTTTATGAAA+GGG | 0.505159 | 1.2:-45852126 | MS.gene065719:CDS |
| TTAATAAGTTTGAAGGGGAC+GGG | 0.506571 | 1.2:-45856935 | MS.gene065719:CDS |
| CTTTCTGGTGCGTAAGTGGA+TGG | 0.510746 | 1.2:+45848301 | None:intergenic |
| CATACATGAGCATCCACATC+AGG | 0.511008 | 1.2:+45851864 | None:intergenic |
| GCTGCAGCAGGCTATTGATA+AGG | 0.512317 | 1.2:-45856447 | MS.gene065719:CDS |
| TTCATATCAATTGTATGTTG+AGG | 0.514605 | 1.2:-45855341 | MS.gene065719:intron |
| CTCCTCACCAACCGGTGTGA+TGG | 0.515931 | 1.2:+45852144 | None:intergenic |
| CGTTGGGCATGCAGCAATGT+TGG | 0.517058 | 1.2:-45848466 | MS.gene065719:CDS |
| TTAGCACTGGCGTCAGCTTG+TGG | 0.517278 | 1.2:+45860126 | None:intergenic |
| GCACGTTATAACGGTGATGC+TGG | 0.519488 | 1.2:-45849862 | MS.gene065719:CDS |
| GAACAGCCTGCACCAAATGT+AGG | 0.520502 | 1.2:-45850457 | MS.gene065719:CDS |
| TGCATTGGTCCAGTTTGCTA+AGG | 0.521404 | 1.2:-45857067 | MS.gene065719:intron |
| CTATTGATAAGGAGAAAATA+TGG | 0.523593 | 1.2:-45856436 | MS.gene065719:CDS |
| TTATTACAGGTATCTTATTG+GGG | 0.523663 | 1.2:-45855401 | MS.gene065719:intron |
| TTCTCTGATTAAGCTCTCCA+AGG | 0.529124 | 1.2:+45857034 | None:intergenic |
| GGTGAAGGCATTGTCATGTC+AGG | 0.529130 | 1.2:-45859923 | MS.gene065719:intron |
| ATGTCAATGTATTTGTTCAA+AGG | 0.529604 | 1.2:-45857638 | MS.gene065719:CDS |
| ATGACAATGTAAAGGTGGAC+AGG | 0.530740 | 1.2:-45852090 | MS.gene065719:CDS |
| TTGCTCGGAAAGATGCCTCC+AGG | 0.532885 | 1.2:+45853268 | None:intergenic |
| AACTAATGGATGAGAGTTGT+GGG | 0.533106 | 1.2:+45855362 | None:intergenic |
| ATAGGTAGTTTGTGAAGAGC+TGG | 0.533672 | 1.2:-45855240 | MS.gene065719:intron |
| ATGGCTTCAGTTGTTCCTAT+CGG | 0.533849 | 1.2:-45849416 | MS.gene065719:CDS |
| CAATGCATGTAAGTGCAAGC+AGG | 0.534320 | 1.2:+45856723 | None:intergenic |
| AGACAAATTGGAAAATCTCG+TGG | 0.536140 | 1.2:-45851936 | MS.gene065719:CDS |
| TATAATTCTATAAAGGATGT+TGG | 0.536506 | 1.2:-45856581 | MS.gene065719:CDS |
| AGAGCAAACAGCAAATGCTT+GGG | 0.537493 | 1.2:+45855124 | None:intergenic |
| CCTTTGTTAATAAGTTTGAA+GGG | 0.539411 | 1.2:-45856941 | MS.gene065719:CDS |
| AGCATCACAAAACAGTCTCA+TGG | 0.542742 | 1.2:-45855188 | MS.gene065719:CDS |
| GCCCGACCCGGAACCTGATG+TGG | 0.543249 | 1.2:-45851877 | MS.gene065719:CDS |
| CAGAAAGAATGACAATGTAA+AGG | 0.547359 | 1.2:-45852098 | MS.gene065719:CDS |
| ATCCACATCAGGTTCCGGGT+CGG | 0.548048 | 1.2:+45851875 | None:intergenic |
| GCTTCTAAGAAATGAGCTGA+TGG | 0.549207 | 1.2:-45850395 | MS.gene065719:CDS |
| AGACCAAACCGCATGGGTGA+AGG | 0.550828 | 1.2:-45859938 | MS.gene065719:CDS |
| TTGGGGTAGACCAAACCGCA+TGG | 0.552422 | 1.2:-45859945 | MS.gene065719:CDS |
| CAACATTGCTGCATGCCCAA+CGG | 0.554350 | 1.2:+45848467 | None:intergenic |
| TCACTGGTTGACATTGACAT+TGG | 0.556566 | 1.2:+45848244 | None:intergenic |
| GATGATGGTGCACGTTATAA+CGG | 0.560219 | 1.2:-45849871 | MS.gene065719:CDS |
| CATCCACTTACGCACCAGAA+AGG | 0.560597 | 1.2:-45848300 | MS.gene065719:CDS |
| AAGCCAAGCTGTTGAAAACC+AGG | 0.562530 | 1.2:+45859966 | None:intergenic |
| TTCTTAGAAGCTCAAAGCGA+AGG | 0.563042 | 1.2:+45850407 | None:intergenic |
| GAGGAGGACAGGTTTATGAA+AGG | 0.563646 | 1.2:-45852127 | MS.gene065719:CDS |
| TCAGAGATATGTACCATCCC+TGG | 0.565736 | 1.2:-45848436 | MS.gene065719:intron |
| AACCATCACACCGGTTGGTG+AGG | 0.566904 | 1.2:-45852146 | MS.gene065719:CDS |
| CGTTGAGTGGGGTTCAGAAG+AGG | 0.568636 | 1.2:-45856501 | MS.gene065719:CDS |
| ATGCCAAGAAAATAGTTGAC+GGG | 0.570230 | 1.2:-45853710 | MS.gene065719:CDS |
| ACAACCCCTACATTTGGTGC+AGG | 0.572458 | 1.2:+45850451 | None:intergenic |
| CATCACACCGGTTGGTGAGG+AGG | 0.575965 | 1.2:-45852143 | MS.gene065719:CDS |
| TGGTAGTTTGATGGACATGC+TGG | 0.577164 | 1.2:-45856630 | MS.gene065719:CDS |
| CCCTTCAAACTTATTAACAA+AGG | 0.580260 | 1.2:+45856941 | None:intergenic |
| CATAATGTTTATACCAGGGA+TGG | 0.584245 | 1.2:+45848423 | None:intergenic |
| AATAAACAGGATGTCTTGCA+AGG | 0.585428 | 1.2:-45849554 | MS.gene065719:intron |
| AAAAGCTGATTCTCTGCAAG+AGG | 0.585912 | 1.2:-45853247 | MS.gene065719:intron |
| GCATCACAAAACAGTCTCAT+GGG | 0.587479 | 1.2:-45855187 | MS.gene065719:CDS |
| ATGATGGTATGACTGTCAAC+GGG | 0.587846 | 1.2:-45860152 | None:intergenic |
| GGATGGTACATATCTCTGAA+TGG | 0.588023 | 1.2:+45848440 | None:intergenic |
| CAACAAGTTGATGGAGTGCA+TGG | 0.588754 | 1.2:-45854927 | MS.gene065719:CDS |
| TCAATGTATTTGTTCAAAGG+AGG | 0.593230 | 1.2:-45857635 | MS.gene065719:intron |
| TCTCTGATTAAGCTCTCCAA+GGG | 0.594955 | 1.2:+45857035 | None:intergenic |
| TGGGGTAGACCAAACCGCAT+GGG | 0.599216 | 1.2:-45859944 | MS.gene065719:CDS |
| AAAGAATGACAATGTAAAGG+TGG | 0.599299 | 1.2:-45852095 | MS.gene065719:CDS |
| GATGCCAAGAAAATAGTTGA+CGG | 0.600651 | 1.2:-45853711 | MS.gene065719:CDS |
| AGTTTGATGGACATGCTGGT+TGG | 0.601484 | 1.2:-45856626 | MS.gene065719:CDS |
| CAGCTGAATTTCTGTCCAGA+GGG | 0.602473 | 1.2:-45855040 | MS.gene065719:intron |
| AAAGAAAACATACAAAGCAA+TGG | 0.602552 | 1.2:+45856899 | None:intergenic |
| AGCTTTATATGATGCAGCCA+GGG | 0.604106 | 1.2:-45860034 | MS.gene065719:CDS |
| CTTTGTTAATAAGTTTGAAG+GGG | 0.606418 | 1.2:-45856940 | MS.gene065719:CDS |
| GCTTTATTAAATACAGCACA+TGG | 0.606466 | 1.2:-45855088 | MS.gene065719:CDS |
| TAAAAGAACCTTAACTGACA+TGG | 0.607581 | 1.2:-45849435 | MS.gene065719:CDS |
| GAACTAATGGATGAGAGTTG+TGG | 0.607614 | 1.2:+45855361 | None:intergenic |
| GTCAAGCTCTAGTTCTGGAA+AGG | 0.610770 | 1.2:-45853355 | MS.gene065719:CDS |
| CAGAAAGGTTGGATCTCTTG+AGG | 0.611545 | 1.2:-45848285 | MS.gene065719:CDS |
| AGAAGCATTAAAATGCCGAT+AGG | 0.614251 | 1.2:+45849401 | None:intergenic |
| CAGTCAACGATAAAAGACTC+AGG | 0.618660 | 1.2:-45853672 | MS.gene065719:CDS |
| GCTCTAAAAGCTGCAGCTCG+AGG | 0.619043 | 1.2:+45856527 | None:intergenic |
| AACAGCCTGAAGTGTACGAA+TGG | 0.620134 | 1.2:-45856998 | MS.gene065719:CDS |
| TCGGGCTTTCTGGGTATAGG+AGG | 0.620870 | 1.2:+45851894 | None:intergenic |
| GATAAAACCATCACACCGGT+TGG | 0.622974 | 1.2:-45852151 | MS.gene065719:CDS |
| AGGTGATGAATTGACCGAGA+AGG | 0.628090 | 1.2:-45849471 | MS.gene065719:CDS |
| GACAACATCTGAAAGCATTG+AGG | 0.629336 | 1.2:-45856405 | MS.gene065719:intron |
| TATACCCAGAAAGCCCGACC+CGG | 0.629720 | 1.2:-45851889 | MS.gene065719:CDS |
| GATTTGATGATCAGTGATGA+TGG | 0.631118 | 1.2:-45849886 | MS.gene065719:CDS |
| GACCATAAATCGTCATCACG+TGG | 0.631638 | 1.2:-45859991 | MS.gene065719:CDS |
| TTTAGAGCAAACGTTGAGTG+GGG | 0.635179 | 1.2:-45856512 | MS.gene065719:CDS |
| AGCATATAATAAGGAGTACA+CGG | 0.636227 | 1.2:+45857701 | None:intergenic |
| TGATGCTGGAGGTGTTCAGA+TGG | 0.637713 | 1.2:-45849848 | MS.gene065719:CDS |
| TTAATGCAGAGATAAGACAT+TGG | 0.637829 | 1.2:-45853739 | MS.gene065719:intron |
| CTATCAGTCAGAAAATAATG+AGG | 0.638672 | 1.2:-45850344 | MS.gene065719:intron |
| GCAGCTGAATTTCTGTCCAG+AGG | 0.641446 | 1.2:-45855041 | MS.gene065719:CDS |
| GATGATGGTATGACTGTCAA+CGG | 0.647798 | 1.2:-45860153 | None:intergenic |
| TGGAGTGCATGGATGAACTT+GGG | 0.666848 | 1.2:-45854916 | MS.gene065719:CDS |
| TATTACAGGTATCTTATTGG+GGG | 0.669200 | 1.2:-45855400 | MS.gene065719:intron |
| CATGGGCATAGTAAACCAGA+AGG | 0.671641 | 1.2:-45855170 | MS.gene065719:CDS |
| TGACAATGCCTTCACCCATG+CGG | 0.692935 | 1.2:+45859930 | None:intergenic |
| CGTTATAACGGTGATGCTGG+AGG | 0.697106 | 1.2:-45849859 | MS.gene065719:CDS |
| CAAACTAAAAGAAACGGGAA+CGG | 0.697326 | 1.2:-45849782 | MS.gene065719:intron |
| TAGTGATAAAACCATCACAC+CGG | 0.705330 | 1.2:-45852155 | MS.gene065719:CDS |
| ACAGCCTGCACCAAATGTAG+GGG | 0.706149 | 1.2:-45850455 | MS.gene065719:CDS |
| GAAAGAAGCTGAATTCCTGG+AGG | 0.720772 | 1.2:-45853283 | MS.gene065719:CDS |
| ATATAATAAGGAGTACACGG+CGG | 0.819367 | 1.2:+45857704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 45848207 | 45860166 | 45848207 | ID=MS.gene065719 |
| chr1.2 | mRNA | 45848207 | 45860166 | 45848207 | ID=MS.gene065719.t1;Parent=MS.gene065719 |
| chr1.2 | exon | 45859924 | 45860166 | 45859924 | ID=MS.gene065719.t1.exon1;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45859924 | 45860166 | 45859924 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45857636 | 45857727 | 45857636 | ID=MS.gene065719.t1.exon2;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45857636 | 45857727 | 45857636 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45856912 | 45857076 | 45856912 | ID=MS.gene065719.t1.exon3;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45856912 | 45857076 | 45856912 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45856406 | 45856793 | 45856406 | ID=MS.gene065719.t1.exon4;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45856406 | 45856793 | 45856406 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45855696 | 45855814 | 45855696 | ID=MS.gene065719.t1.exon5;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45855696 | 45855814 | 45855696 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45855342 | 45855414 | 45855342 | ID=MS.gene065719.t1.exon6;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45855342 | 45855414 | 45855342 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45855041 | 45855258 | 45855041 | ID=MS.gene065719.t1.exon7;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45855041 | 45855258 | 45855041 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45854908 | 45854952 | 45854908 | ID=MS.gene065719.t1.exon8;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45854908 | 45854952 | 45854908 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45853659 | 45853752 | 45853659 | ID=MS.gene065719.t1.exon9;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45853659 | 45853752 | 45853659 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45853248 | 45853439 | 45853248 | ID=MS.gene065719.t1.exon10;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45853248 | 45853439 | 45853248 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45852082 | 45852185 | 45852082 | ID=MS.gene065719.t1.exon11;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45852082 | 45852185 | 45852082 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45851869 | 45851956 | 45851869 | ID=MS.gene065719.t1.exon12;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45851869 | 45851956 | 45851869 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45850345 | 45850491 | 45850345 | ID=MS.gene065719.t1.exon13;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45850345 | 45850491 | 45850345 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45849783 | 45849908 | 45849783 | ID=MS.gene065719.t1.exon14;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45849783 | 45849908 | 45849783 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45849397 | 45849567 | 45849397 | ID=MS.gene065719.t1.exon15;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45849397 | 45849567 | 45849397 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45848437 | 45848496 | 45848437 | ID=MS.gene065719.t1.exon16;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45848437 | 45848496 | 45848437 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| chr1.2 | exon | 45848207 | 45848326 | 45848207 | ID=MS.gene065719.t1.exon17;Parent=MS.gene065719.t1 |
| chr1.2 | CDS | 45848207 | 45848326 | 45848207 | ID=cds.MS.gene065719.t1;Parent=MS.gene065719.t1 |
| Gene Sequence |
| Protein sequence |
