AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007292


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007292.t1 MTR_1g061050 87.989 358 43 0 1 358 1 358 0.0 657
MS.gene007292.t1 MTR_5g069055 85.754 358 51 0 1 358 1 358 0.0 641
MS.gene007292.t1 MTR_5g069050 79.609 358 58 1 1 358 42 384 0.0 582
MS.gene007292.t1 MTR_5g096670 78.492 358 76 1 1 358 1 357 0.0 573
MS.gene007292.t1 MTR_4g057670 55.966 352 150 4 8 358 53 400 1.60e-135 392
MS.gene007292.t1 MTR_4g071860 55.966 352 150 4 8 358 53 400 2.15e-135 392
MS.gene007292.t1 MTR_1g109200 53.652 356 160 4 4 358 40 391 4.18e-133 385
MS.gene007292.t1 MTR_4g071880 50.141 355 154 6 8 358 51 386 1.50e-113 335
MS.gene007292.t1 MTR_7g103920 73.958 96 0 1 112 207 11 81 1.26e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007292.t1 AT2G36460 87.151 358 46 0 1 358 1 358 0.0 654
MS.gene007292.t1 AT3G52930 87.709 358 44 0 1 358 1 358 0.0 650
MS.gene007292.t1 AT5G03690 85.237 359 52 1 1 358 1 359 0.0 615
MS.gene007292.t1 AT5G03690 85.673 349 49 1 11 358 45 393 0.0 600
MS.gene007292.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene007292.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene007292.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene007292.t1 AT4G26520 73.184 358 96 0 1 358 1 358 0.0 538
MS.gene007292.t1 AT4G26520 73.315 356 95 0 1 356 1 356 0.0 535
MS.gene007292.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene007292.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene007292.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene007292.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene007292.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene007292.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene007292.t1 AT4G38970 54.802 354 155 4 6 358 49 398 8.76e-134 387
MS.gene007292.t1 AT2G01140 54.830 352 154 4 8 358 44 391 2.92e-133 386
MS.gene007292.t1 AT2G21330 53.955 354 158 4 6 358 50 399 9.02e-132 382
MS.gene007292.t1 AT2G21330 51.977 354 155 5 6 358 50 389 7.89e-123 359
MS.gene007292.t1 AT4G38970 55.598 259 113 2 6 263 49 306 2.38e-96 291
MS.gene007292.t1 AT2G21330 53.668 259 118 2 6 263 50 307 5.63e-94 283

Find 121 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCAATTTGTTCA+TGG 0.195538 7.4:-6606572 None:intergenic
TGGGCACTTTCTTTCTCTTT+TGG 0.238095 7.4:+6606601 MS.gene007292:CDS
GATCCGTCCACTAGGATTTC+AGG 0.276408 7.4:-6606283 None:intergenic
CTCAGGAAGCATTCATTTCT+AGG 0.287182 7.4:+6606686 MS.gene007292:CDS
AGGAGTTCTTCCTGGCATTA+AGG 0.292833 7.4:+6606021 MS.gene007292:CDS
GCAACTTTGGGAACTTATAA+AGG 0.304285 7.4:+6606727 MS.gene007292:CDS
CACCAGCTTCATAGTACTTC+TGG 0.307791 7.4:-6606123 None:intergenic
GGCCTTGCAGCGAACCGTTC+CGG 0.326308 7.4:+6606480 MS.gene007292:CDS
CCTGCTGTTGTGTTCTTGTC+TGG 0.328998 7.4:+6606511 MS.gene007292:CDS
TGAGGTGACTGAACGTGTTC+TGG 0.341250 7.4:+6606327 MS.gene007292:CDS
GATGAATCAACTGGTACAAT+TGG 0.356390 7.4:+6605178 MS.gene007292:CDS
GGCTAACTCACAAGCAACTT+TGG 0.373884 7.4:+6606714 MS.gene007292:CDS
GTATATTCGGCTATAACTTC+AGG 0.378009 7.4:-6606451 None:intergenic
AAGTACCTGCAGCTGTCTTT+TGG 0.387833 7.4:-6605330 None:intergenic
TTGGGTGGTGGTTTCCCCAT+TGG 0.390053 7.4:-6606074 None:intergenic
AAGCACCAGGGGTGGTGAAT+AGG 0.392542 7.4:-6605264 None:intergenic
CAAGGCCTTAACGGTATATT+CGG 0.396094 7.4:-6606464 None:intergenic
CTCTGAGTCTCTCCATGTTA+AGG 0.403479 7.4:+6606774 MS.gene007292:CDS
AAGGAAGGAGGAGTTCTTCC+TGG 0.405511 7.4:+6606013 MS.gene007292:CDS
GGTTCGCTGCAAGGCCTTAA+CGG 0.417489 7.4:-6606473 None:intergenic
AAGCATTCATTTCTAGGTGC+AGG 0.421155 7.4:+6606692 MS.gene007292:CDS
GCTAACTCACAAGCAACTTT+GGG 0.426606 7.4:+6606715 MS.gene007292:CDS
CAGCACGCCACTTAGCAAAT+CGG 0.429319 7.4:-6606147 None:intergenic
AGGATTTCAGGCTCCACTAT+AGG 0.433980 7.4:-6606271 None:intergenic
GGAAACCACCACCCAAGGTT+TGG 0.439052 7.4:+6606081 MS.gene007292:CDS
AGTACTCTCAAGGCATGGGC+TGG 0.441574 7.4:+6606640 MS.gene007292:CDS
GCTGCTTACATTGGCAGCCC+AGG 0.446993 7.4:+6605136 MS.gene007292:CDS
GACAGCTCAGATGGCTCGTT+GGG 0.447524 7.4:-6606184 None:intergenic
AAGGGCACTGTAGAGCTTGC+TGG 0.449470 7.4:+6606049 MS.gene007292:CDS
GACATTCTCAACATTAATGC+TGG 0.457419 7.4:-6605212 None:intergenic
TTGAGAATGTCGAAACAAAC+AGG 0.460067 7.4:+6605224 MS.gene007292:CDS
ACCCAAGGTTTGGATGGGCT+TGG 0.462623 7.4:+6606091 MS.gene007292:CDS
GCGGCAAGGATACCCTTCCC+TGG 0.464998 7.4:-6605154 None:intergenic
CCAGACAAGAACACAACAGC+AGG 0.465132 7.4:-6606511 None:intergenic
TAGAGCTTGCTGGAACCAAT+GGG 0.468785 7.4:+6606059 MS.gene007292:CDS
TATAAAGGTGATTCTACCCT+TGG 0.470420 7.4:+6606742 MS.gene007292:CDS
AGCACGCCACTTAGCAAATC+GGG 0.476929 7.4:-6606146 None:intergenic
ACCTTTCGTAGAGTTGTTGA+AGG 0.478093 7.4:+6605994 MS.gene007292:CDS
ACCACCACCCAAGGTTTGGA+TGG 0.478747 7.4:+6606085 MS.gene007292:CDS
CCCATCCAAACCTTGGGTGG+TGG 0.479234 7.4:-6606086 None:intergenic
TGGTACAATTGGGAAGCGTT+TGG 0.480915 7.4:+6605189 MS.gene007292:CDS
GACCAAGCCCATCCAAACCT+TGG 0.485707 7.4:-6606093 None:intergenic
ACCAAGCCCATCCAAACCTT+GGG 0.487111 7.4:-6606092 None:intergenic
CAATGCCATGAACAAATTGA+AGG 0.489466 7.4:+6606567 MS.gene007292:CDS
TGGCGTGCTGTCCTCAAGAT+TGG 0.490006 7.4:+6606160 MS.gene007292:CDS
CAGGCTCCACTATAGGAACT+AGG 0.495272 7.4:-6606264 None:intergenic
ATGAATCAACTGGTACAATT+GGG 0.496848 7.4:+6605179 MS.gene007292:CDS
AGCCGGAACGGTTCGCTGCA+AGG 0.504681 7.4:-6606482 None:intergenic
GCTGTTGTGTTCTTGTCTGG+TGG 0.505060 7.4:+6606514 MS.gene007292:CDS
TATAGCCGAATATACCGTTA+AGG 0.505464 7.4:+6606459 MS.gene007292:CDS
GTAGAGTTGTTGAAGGAAGG+AGG 0.506426 7.4:+6606001 MS.gene007292:CDS
GTAGAGCTTGCTGGAACCAA+TGG 0.507341 7.4:+6606058 MS.gene007292:CDS
TATATTCGGCTATAACTTCA+GGG 0.510081 7.4:-6606450 None:intergenic
CTATACCAAAAGACAGCTGC+AGG 0.511625 7.4:+6605325 MS.gene007292:CDS
GTACTCTCAAGGCATGGGCT+GGG 0.512522 7.4:+6606641 MS.gene007292:CDS
GGGTGGTGAATAGGAGTTCA+CGG 0.514483 7.4:-6605255 None:intergenic
GAATGGCCTAGTTCCTATAG+TGG 0.514663 7.4:+6606258 MS.gene007292:CDS
TCTATCCACGAGAACGCCTA+TGG 0.515668 7.4:+6606205 MS.gene007292:CDS
CCCTTGTCAACCTTAATGCC+AGG 0.519001 7.4:-6606031 None:intergenic
CCCCGGTTCAGATTCTCAAA+AGG 0.519538 7.4:+6606423 MS.gene007292:CDS
TCAATTTGTTCATGGCATTG+AGG 0.520997 7.4:-6606564 None:intergenic
CTGAGGCAGTCAAAAGCACC+AGG 0.521879 7.4:-6605277 None:intergenic
CTTGCCGCTGATGAATCAAC+TGG 0.521919 7.4:+6605169 MS.gene007292:CDS
ATTGCCAATGCTGCTTACAT+TGG 0.521934 7.4:+6605127 MS.gene007292:CDS
TTCGTAGAGTTGTTGAAGGA+AGG 0.523483 7.4:+6605998 MS.gene007292:CDS
GCTGCCAATGTAAGCAGCAT+TGG 0.524935 7.4:-6605131 None:intergenic
AGCAGAGTACTCTCAAGGCA+TGG 0.525031 7.4:+6606635 MS.gene007292:CDS
CGGCAAGGATACCCTTCCCT+GGG 0.530056 7.4:-6605153 None:intergenic
TGAAAACATTAAGAAGGCTC+AGG 0.537239 7.4:+6606669 MS.gene007292:CDS
TCCTTCAACAACTCTACGAA+AGG 0.538329 7.4:-6605995 None:intergenic
TCCTGGCATTAAGGTTGACA+AGG 0.539046 7.4:+6606030 MS.gene007292:CDS
TGCCAGAAGTACTATGAAGC+TGG 0.539839 7.4:+6606121 MS.gene007292:CDS
GCTGTCATATGCCAAGAGAA+TGG 0.540178 7.4:+6606241 MS.gene007292:CDS
TTACATTGGCAGCCCAGGGA+AGG 0.541012 7.4:+6605141 MS.gene007292:CDS
ACAACAGCAGGAACTGCAGC+CGG 0.552294 7.4:-6606499 None:intergenic
TAGGAACTAGGCCATTCTCT+TGG 0.555043 7.4:-6606252 None:intergenic
TGGTGGACAGAGTGAGGAGG+AGG 0.559419 7.4:+6606531 MS.gene007292:CDS
GAAAGATGAAAACATTAAGA+AGG 0.560338 7.4:+6606663 MS.gene007292:CDS
AGCAGGAACTGCAGCCGGAA+CGG 0.563737 7.4:-6606494 None:intergenic
GAACTCCTATTCACCACCCC+TGG 0.564552 7.4:+6605259 MS.gene007292:CDS
CTAGACCATAGGCGTTCTCG+TGG 0.564863 7.4:-6606210 None:intergenic
AGCATTCATTTCTAGGTGCA+GGG 0.565780 7.4:+6606693 MS.gene007292:CDS
TACATTGGCAGCCCAGGGAA+GGG 0.567931 7.4:+6605142 MS.gene007292:CDS
AGACAGCTCAGATGGCTCGT+TGG 0.568425 7.4:-6606185 None:intergenic
CCACCACCCAAGGTTTGGAT+GGG 0.574869 7.4:+6606086 MS.gene007292:CDS
CTGCTTACATTGGCAGCCCA+GGG 0.576119 7.4:+6605137 MS.gene007292:CDS
AAGCCCAACATGGTAACCCC+CGG 0.580471 7.4:+6606406 MS.gene007292:CDS
GCAGAGTACTCTCAAGGCAT+GGG 0.580912 7.4:+6606636 MS.gene007292:CDS
CTGGTGCCCGATTTGCTAAG+TGG 0.581290 7.4:+6606140 MS.gene007292:CDS
AGTATTTGTAATCCTTAACA+TGG 0.585318 7.4:-6606786 None:intergenic
AATGCCATGAACAAATTGAA+GGG 0.590609 7.4:+6606568 MS.gene007292:CDS
TCGTGGATAGACAGCTCAGA+TGG 0.594167 7.4:-6606193 None:intergenic
TGTCATGAGATCCGTCCACT+AGG 0.594938 7.4:-6606291 None:intergenic
AATGGGGAAACCACCACCCA+AGG 0.600888 7.4:+6606076 MS.gene007292:CDS
AATTGAAGGGAAAGAAGCCG+TGG 0.606270 7.4:+6606581 MS.gene007292:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.610600 7.4:+6606525 MS.gene007292:CDS
AAGCCCATCCAAACCTTGGG+TGG 0.615549 7.4:-6606089 None:intergenic
GCTCGTTGGGACCAATCTTG+AGG 0.620621 7.4:-6606171 None:intergenic
GAGCCTGAAATCCTAGTGGA+CGG 0.627594 7.4:+6606280 MS.gene007292:CDS
CAGTTGATTCATCAGCGGCA+AGG 0.629317 7.4:-6605168 None:intergenic
GCAGTCAAAAGCACCAGGGG+TGG 0.632487 7.4:-6605272 None:intergenic
CTCAGAGGCACCATCACCAA+GGG 0.635565 7.4:-6606758 None:intergenic
GGTGATTCTACCCTTGGTGA+TGG 0.637135 7.4:+6606748 MS.gene007292:CDS
ACTTCAGCAGAGTACTCTCA+AGG 0.637395 7.4:+6606630 MS.gene007292:CDS
AAAGAGAAAGAAAGTGCCCA+CGG 0.650023 7.4:-6606598 None:intergenic
GATCATCATGTTCTACTCGA+AGG 0.653456 7.4:+6606373 MS.gene007292:CDS
CCTGGCATTAAGGTTGACAA+GGG 0.666501 7.4:+6606031 MS.gene007292:CDS
GTCTGGTGGACAGAGTGAGG+AGG 0.667820 7.4:+6606528 MS.gene007292:CDS
AGTGGAGCCTGAAATCCTAG+TGG 0.667846 7.4:+6606276 MS.gene007292:CDS
ACTCAGAGGCACCATCACCA+AGG 0.668916 7.4:-6606759 None:intergenic
GAGGCAGTCAAAAGCACCAG+GGG 0.673021 7.4:-6605275 None:intergenic
TGTACCAGTTGATTCATCAG+CGG 0.678605 7.4:-6605173 None:intergenic
CTTAACATGGAGAGACTCAG+AGG 0.681234 7.4:-6606773 None:intergenic
ATTGAAGGGAAAGAAGCCGT+GGG 0.685142 7.4:+6606582 MS.gene007292:CDS
ATATTCGGCTATAACTTCAG+GGG 0.697227 7.4:-6606449 None:intergenic
TTCTTCAAGAGCAAATACCA+AGG 0.700911 7.4:+6604424 MS.gene007292:CDS
AGCATAGCGAGCTAGACCAT+AGG 0.708256 7.4:-6606221 None:intergenic
TGAGGCAGTCAAAAGCACCA+GGG 0.711166 7.4:-6605276 None:intergenic
TGACATCAACAAGTGTGCTG+AGG 0.731985 7.4:+6606309 MS.gene007292:CDS
AGAGCTTGCTGGAACCAATG+GGG 0.738968 7.4:+6606060 MS.gene007292:CDS
CATATAAAATCACACCACTG+AGG 0.751130 7.4:-6605294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTATTAATAA+TGG + chr7.4:6604706-6604725 MS.gene007292:intron 0.0%
!! CATTTAAAAAAATAAAGTTT+AGG - chr7.4:6605957-6605976 None:intergenic 10.0%
!! TAACATATATGAAAATAGTT+TGG + chr7.4:6605730-6605749 MS.gene007292:intron 15.0%
!!! TTTTAAATGTAATTAATTGC+AGG + chr7.4:6605968-6605987 MS.gene007292:intron 15.0%
!! TCTCAAATTATTATCTGTTT+CGG - chr7.4:6604839-6604858 None:intergenic 20.0%
!! TCTTTCTAACATCATAAATA+AGG - chr7.4:6605361-6605380 None:intergenic 20.0%
!!! AGATCAAGCAATTTATTTTA+GGG - chr7.4:6604753-6604772 None:intergenic 20.0%
!!! GTAAGATTTTAATCTTGTTT+TGG + chr7.4:6604971-6604990 MS.gene007292:intron 20.0%
!!! TAGATCAAGCAATTTATTTT+AGG - chr7.4:6604754-6604773 None:intergenic 20.0%
! AAATAAATTGCTTGATCTAC+CGG + chr7.4:6604755-6604774 MS.gene007292:intron 25.0%
! AAATAACCATTCGCATTAAA+AGG - chr7.4:6604611-6604630 None:intergenic 25.0%
! AATAACCATTCGCATTAAAA+GGG - chr7.4:6604610-6604629 None:intergenic 25.0%
! AGACATAAACTGAAAAACAA+GGG - chr7.4:6605489-6605508 None:intergenic 25.0%
! AGATTAACAAACTGCTATTA+CGG + chr7.4:6605045-6605064 MS.gene007292:intron 25.0%
! AGTATTTGTAATCCTTAACA+TGG - chr7.4:6606789-6606808 None:intergenic 25.0%
! ATGTTAAGTATTTCCTTACT+AGG + chr7.4:6605396-6605415 MS.gene007292:intron 25.0%
! CATATGTCAATACATAAGAA+AGG - chr7.4:6605448-6605467 None:intergenic 25.0%
! GAAAGATGAAAACATTAAGA+AGG + chr7.4:6606663-6606682 MS.gene007292:CDS 25.0%
! TAGACATAAACTGAAAAACA+AGG - chr7.4:6605490-6605509 None:intergenic 25.0%
! TCATTAGTTATTAGAACTTC+TGG - chr7.4:6605700-6605719 None:intergenic 25.0%
! TGAGAAAATGATATAATCTG+AGG + chr7.4:6604854-6604873 MS.gene007292:intron 25.0%
! TTAAGAGACAATAATAGCAT+CGG - chr7.4:6604490-6604509 None:intergenic 25.0%
!! AAAGTCTGAAGCATAATAAA+AGG - chr7.4:6604643-6604662 None:intergenic 25.0%
!! AAGTCTGAAGCATAATAAAA+GGG - chr7.4:6604642-6604661 None:intergenic 25.0%
!!! CATATTTTTTCAGTCTTCAT+CGG + chr7.4:6605929-6605948 MS.gene007292:intron 25.0%
!!! TCTTATTTTGTCATATTTGC+AGG - chr7.4:6604933-6604952 None:intergenic 25.0%
AATGCCATGAACAAATTGAA+GGG + chr7.4:6606568-6606587 MS.gene007292:CDS 30.0%
ATGAATCAACTGGTACAATT+GGG + chr7.4:6605179-6605198 MS.gene007292:CDS 30.0%
CAGTTTATGTCTAATGTTCT+TGG + chr7.4:6605497-6605516 MS.gene007292:intron 30.0%
CGATGAAGACTGAAAAAATA+TGG - chr7.4:6605931-6605950 None:intergenic 30.0%
CGGACATTATTAACAATGAA+AGG - chr7.4:6604470-6604489 None:intergenic 30.0%
GAAATAAGTTCAGCAACTAA+TGG - chr7.4:6605678-6605697 None:intergenic 30.0%
TATATTCGGCTATAACTTCA+GGG - chr7.4:6606453-6606472 None:intergenic 30.0%
!!! AGTTATACGCTGTTTTGAAA+AGG - chr7.4:6605759-6605778 None:intergenic 30.0%
!!! TTTCTTGTTTTCGTCGATTT+TGG + chr7.4:6604554-6604573 MS.gene007292:intron 30.0%
!!! TTTTTATCCTTTAGAGCTTC+TGG - chr7.4:6605837-6605856 None:intergenic 30.0%
AAGCTATCATAGAGAGACTA+TGG - chr7.4:6605604-6605623 None:intergenic 35.0%
ATATTCGGCTATAACTTCAG+GGG - chr7.4:6606452-6606471 None:intergenic 35.0%
CAATGCCATGAACAAATTGA+AGG + chr7.4:6606567-6606586 MS.gene007292:CDS 35.0%
CATATAAAATCACACCACTG+AGG - chr7.4:6605297-6605316 None:intergenic 35.0%
GACATTCTCAACATTAATGC+TGG - chr7.4:6605215-6605234 None:intergenic 35.0%
GACGAAAACAAGAAAGATAG+AGG - chr7.4:6604549-6604568 None:intergenic 35.0%
GAGTAAATGAGAGAATACCT+TGG - chr7.4:6604444-6604463 None:intergenic 35.0%
GATGAATCAACTGGTACAAT+TGG + chr7.4:6605178-6605197 MS.gene007292:CDS 35.0%
GTATATTCGGCTATAACTTC+AGG - chr7.4:6606454-6606473 None:intergenic 35.0%
TATAAAGGTGATTCTACCCT+TGG + chr7.4:6606742-6606761 MS.gene007292:CDS 35.0%
TATAGCCGAATATACCGTTA+AGG + chr7.4:6606459-6606478 MS.gene007292:CDS 35.0%
TCCAGATCAAAAGTCATGAT+AGG - chr7.4:6605007-6605026 None:intergenic 35.0%
TGAAAACATTAAGAAGGCTC+AGG + chr7.4:6606669-6606688 MS.gene007292:CDS 35.0%
TTCTTCAAGAGCAAATACCA+AGG + chr7.4:6604424-6604443 MS.gene007292:CDS 35.0%
TTGAGAATGTCGAAACAAAC+AGG + chr7.4:6605224-6605243 MS.gene007292:CDS 35.0%
! CAGTGGTGTGATTTTATATG+AGG + chr7.4:6605297-6605316 MS.gene007292:CDS 35.0%
! CTTATTTCCAGAAGCTCTAA+AGG + chr7.4:6605827-6605846 MS.gene007292:intron 35.0%
! CTTTCCCTTCAATTTGTTCA+TGG - chr7.4:6606575-6606594 None:intergenic 35.0%
! GCAACTTTGGGAACTTATAA+AGG + chr7.4:6606727-6606746 MS.gene007292:CDS 35.0%
! TATTATCTGTTTCGGTGTGT+CGG - chr7.4:6604831-6604850 None:intergenic 35.0%
! TCAATTTGTTCATGGCATTG+AGG - chr7.4:6606567-6606586 None:intergenic 35.0%
! TTGATCCCTTTTAATGCGAA+TGG + chr7.4:6604602-6604621 MS.gene007292:intron 35.0%
!! AACCTTTTGAGAATCTGAAC+CGG - chr7.4:6606428-6606447 None:intergenic 35.0%
!! TTGCTCATTGATTCCTAGTA+AGG - chr7.4:6605412-6605431 None:intergenic 35.0%
!!! ACTTTATTTTCAGTCGCCAT+TGG + chr7.4:6605796-6605815 MS.gene007292:intron 35.0%
ACCTTTCGTAGAGTTGTTGA+AGG + chr7.4:6605994-6606013 MS.gene007292:CDS 40.0%
ACTCCAGAACACATACAGAT+CGG - chr7.4:6604686-6604705 None:intergenic 40.0%
ATAATCCCAACCTACAGGTA+TGG - chr7.4:6604909-6604928 None:intergenic 40.0%
ATACCGATCTGTATGTGTTC+TGG + chr7.4:6604680-6604699 MS.gene007292:intron 40.0%
ATATTGAGCCTACGAAGACA+CGG + chr7.4:6604802-6604821 MS.gene007292:intron 40.0%
ATCAGCTCAACTATGAAGCA+CGG - chr7.4:6604885-6604904 None:intergenic 40.0%
CAAGGCCTTAACGGTATATT+CGG - chr7.4:6606467-6606486 None:intergenic 40.0%
CAGACTTTCTCGAATTGTCA+TGG + chr7.4:6604516-6604535 MS.gene007292:intron 40.0%
GATCATCATGTTCTACTCGA+AGG + chr7.4:6606373-6606392 MS.gene007292:CDS 40.0%
GCTAACTCACAAGCAACTTT+GGG + chr7.4:6606715-6606734 MS.gene007292:CDS 40.0%
TAACAAACTGCTATTACGGC+AGG + chr7.4:6605049-6605068 MS.gene007292:intron 40.0%
TCCTTCAACAACTCTACGAA+AGG - chr7.4:6605998-6606017 None:intergenic 40.0%
TGATACCATACCTGTAGGTT+GGG + chr7.4:6604901-6604920 MS.gene007292:intron 40.0%
TTCGTAGAGTTGTTGAAGGA+AGG + chr7.4:6605998-6606017 MS.gene007292:CDS 40.0%
! AAACAAGAGCACAAGCATTC+CGG - chr7.4:6604777-6604796 None:intergenic 40.0%
! AAGCATTCATTTCTAGGTGC+AGG + chr7.4:6606692-6606711 MS.gene007292:CDS 40.0%
! AGAGCTTCTGGAAATAAGCT+CGG - chr7.4:6605825-6605844 None:intergenic 40.0%
! AGCATTCATTTCTAGGTGCA+GGG + chr7.4:6606693-6606712 MS.gene007292:CDS 40.0%
! ATTGCCAATGCTGCTTACAT+TGG + chr7.4:6605127-6605146 MS.gene007292:CDS 40.0%
! GCCTATCATGACTTTTGATC+TGG + chr7.4:6605003-6605022 MS.gene007292:intron 40.0%
! TGGGCACTTTCTTTCTCTTT+TGG + chr7.4:6606601-6606620 MS.gene007292:CDS 40.0%
! TGTACCAGTTGATTCATCAG+CGG - chr7.4:6605176-6605195 None:intergenic 40.0%
!! AAAGAGAAAGAAAGTGCCCA+CGG - chr7.4:6606601-6606620 None:intergenic 40.0%
!! ACCTTTTGAGAATCTGAACC+GGG - chr7.4:6606427-6606446 None:intergenic 40.0%
!! CTCAGGAAGCATTCATTTCT+AGG + chr7.4:6606686-6606705 MS.gene007292:CDS 40.0%
!!! AACTCTTTTGAAGCCCAACA+TGG + chr7.4:6606396-6606415 MS.gene007292:CDS 40.0%
AATTGAAGGGAAAGAAGCCG+TGG + chr7.4:6606581-6606600 MS.gene007292:CDS 45.0%
AGGAGTTCTTCCTGGCATTA+AGG + chr7.4:6606021-6606040 MS.gene007292:CDS 45.0%
AGGATTTCAGGCTCCACTAT+AGG - chr7.4:6606274-6606293 None:intergenic 45.0%
ATTGAAGGGAAAGAAGCCGT+GGG + chr7.4:6606582-6606601 MS.gene007292:CDS 45.0%
CACCAGCTTCATAGTACTTC+TGG - chr7.4:6606126-6606145 None:intergenic 45.0%
CCTGGCATTAAGGTTGACAA+GGG + chr7.4:6606031-6606050 MS.gene007292:CDS 45.0%
CTATACCAAAAGACAGCTGC+AGG + chr7.4:6605325-6605344 MS.gene007292:CDS 45.0%
CTCTGAGTCTCTCCATGTTA+AGG + chr7.4:6606774-6606793 MS.gene007292:CDS 45.0%
CTGATACCATACCTGTAGGT+TGG + chr7.4:6604900-6604919 MS.gene007292:intron 45.0%
CTTAACATGGAGAGACTCAG+AGG - chr7.4:6606776-6606795 None:intergenic 45.0%
GAAATAAGCTCGGCAACCAA+TGG - chr7.4:6605815-6605834 None:intergenic 45.0%
GAATGGCCTAGTTCCTATAG+TGG + chr7.4:6606258-6606277 MS.gene007292:CDS 45.0%
GCTGTCATATGCCAAGAGAA+TGG + chr7.4:6606241-6606260 MS.gene007292:CDS 45.0%
GGCTAACTCACAAGCAACTT+TGG + chr7.4:6606714-6606733 MS.gene007292:CDS 45.0%
GTAGAGTTGTTGAAGGAAGG+AGG + chr7.4:6606001-6606020 MS.gene007292:CDS 45.0%
TAGGAACTAGGCCATTCTCT+TGG - chr7.4:6606255-6606274 None:intergenic 45.0%
TCCTGGCATTAAGGTTGACA+AGG + chr7.4:6606030-6606049 MS.gene007292:CDS 45.0%
TGACATCAACAAGTGTGCTG+AGG + chr7.4:6606309-6606328 MS.gene007292:CDS 45.0%
TGAGCTGATACCATACCTGT+AGG + chr7.4:6604896-6604915 MS.gene007292:intron 45.0%
! AAGTACCTGCAGCTGTCTTT+TGG - chr7.4:6605333-6605352 None:intergenic 45.0%
! ACTTCAGCAGAGTACTCTCA+AGG + chr7.4:6606630-6606649 MS.gene007292:CDS 45.0%
!! CCTTTTGAGAATCTGAACCG+GGG - chr7.4:6606426-6606445 None:intergenic 45.0%
!! CTTTTGAGAATCTGAACCGG+GGG - chr7.4:6606425-6606444 None:intergenic 45.0%
!! TAGAGCTTGCTGGAACCAAT+GGG + chr7.4:6606059-6606078 MS.gene007292:CDS 45.0%
!! TGCCAGAAGTACTATGAAGC+TGG + chr7.4:6606121-6606140 MS.gene007292:CDS 45.0%
!! TGGTACAATTGGGAAGCGTT+TGG + chr7.4:6605189-6605208 MS.gene007292:CDS 45.0%
AAGGAAGGAGGAGTTCTTCC+TGG + chr7.4:6606013-6606032 MS.gene007292:CDS 50.0%
ACCAAGCCCATCCAAACCTT+GGG - chr7.4:6606095-6606114 None:intergenic 50.0%
AGCACGCCACTTAGCAAATC+GGG - chr7.4:6606149-6606168 None:intergenic 50.0%
AGCATAGCGAGCTAGACCAT+AGG - chr7.4:6606224-6606243 None:intergenic 50.0%
AGTGGAGCCTGAAATCCTAG+TGG + chr7.4:6606276-6606295 MS.gene007292:CDS 50.0%
CAGCACGCCACTTAGCAAAT+CGG - chr7.4:6606150-6606169 None:intergenic 50.0%
CAGGCATAATCCCAACCTAC+AGG - chr7.4:6604914-6604933 None:intergenic 50.0%
CAGGCTCCACTATAGGAACT+AGG - chr7.4:6606267-6606286 None:intergenic 50.0%
CCAGACAAGAACACAACAGC+AGG - chr7.4:6606514-6606533 None:intergenic 50.0%
CCCCGGTTCAGATTCTCAAA+AGG + chr7.4:6606423-6606442 MS.gene007292:CDS 50.0%
CCCTTGTCAACCTTAATGCC+AGG - chr7.4:6606034-6606053 None:intergenic 50.0%
CCTGCTGTTGTGTTCTTGTC+TGG + chr7.4:6606511-6606530 MS.gene007292:CDS 50.0%
CTTGCCGCTGATGAATCAAC+TGG + chr7.4:6605169-6605188 MS.gene007292:CDS 50.0%
GAGCCTGAAATCCTAGTGGA+CGG + chr7.4:6606280-6606299 MS.gene007292:CDS 50.0%
GATCCGTCCACTAGGATTTC+AGG - chr7.4:6606286-6606305 None:intergenic 50.0%
GCTGCCAATGTAAGCAGCAT+TGG - chr7.4:6605134-6605153 None:intergenic 50.0%
GCTGTTGTGTTCTTGTCTGG+TGG + chr7.4:6606514-6606533 MS.gene007292:CDS 50.0%
GGGTGGTGAATAGGAGTTCA+CGG - chr7.4:6605258-6605277 None:intergenic 50.0%
GGTGATTCTACCCTTGGTGA+TGG + chr7.4:6606748-6606767 MS.gene007292:CDS 50.0%
TCGTGGATAGACAGCTCAGA+TGG - chr7.4:6606196-6606215 None:intergenic 50.0%
TCTATCCACGAGAACGCCTA+TGG + chr7.4:6606205-6606224 MS.gene007292:CDS 50.0%
TGAGGTGACTGAACGTGTTC+TGG + chr7.4:6606327-6606346 MS.gene007292:CDS 50.0%
TGTCATGAGATCCGTCCACT+AGG - chr7.4:6606294-6606313 None:intergenic 50.0%
! AGCAGAGTACTCTCAAGGCA+TGG + chr7.4:6606635-6606654 MS.gene007292:CDS 50.0%
! CAGTTGATTCATCAGCGGCA+AGG - chr7.4:6605171-6605190 None:intergenic 50.0%
! GCAGAGTACTCTCAAGGCAT+GGG + chr7.4:6606636-6606655 MS.gene007292:CDS 50.0%
!! AGAGCTTGCTGGAACCAATG+GGG + chr7.4:6606060-6606079 MS.gene007292:CDS 50.0%
!! GTAGAGCTTGCTGGAACCAA+TGG + chr7.4:6606058-6606077 MS.gene007292:CDS 50.0%
!! TGAGGCAGTCAAAAGCACCA+GGG - chr7.4:6605279-6605298 None:intergenic 50.0%
AAGCACCAGGGGTGGTGAAT+AGG - chr7.4:6605267-6605286 None:intergenic 55.0%
AAGCCCAACATGGTAACCCC+CGG + chr7.4:6606406-6606425 MS.gene007292:CDS 55.0%
AAGCCCATCCAAACCTTGGG+TGG - chr7.4:6606092-6606111 None:intergenic 55.0%
AATGGGGAAACCACCACCCA+AGG + chr7.4:6606076-6606095 MS.gene007292:CDS 55.0%
ACAACAGCAGGAACTGCAGC+CGG - chr7.4:6606502-6606521 None:intergenic 55.0%
ACCACCACCCAAGGTTTGGA+TGG + chr7.4:6606085-6606104 MS.gene007292:CDS 55.0%
AGACAGCTCAGATGGCTCGT+TGG - chr7.4:6606188-6606207 None:intergenic 55.0%
AGTACTCTCAAGGCATGGGC+TGG + chr7.4:6606640-6606659 MS.gene007292:CDS 55.0%
CCACCACCCAAGGTTTGGAT+GGG + chr7.4:6606086-6606105 MS.gene007292:CDS 55.0%
CTAGACCATAGGCGTTCTCG+TGG - chr7.4:6606213-6606232 None:intergenic 55.0%
CTGCTTACATTGGCAGCCCA+GGG + chr7.4:6605137-6605156 MS.gene007292:CDS 55.0%
GAACCGGGGGTTACCATGTT+GGG - chr7.4:6606412-6606431 None:intergenic 55.0%
GAACTCCTATTCACCACCCC+TGG + chr7.4:6605259-6605278 MS.gene007292:CDS 55.0%
GACAGCTCAGATGGCTCGTT+GGG - chr7.4:6606187-6606206 None:intergenic 55.0%
GACCAAGCCCATCCAAACCT+TGG - chr7.4:6606096-6606115 None:intergenic 55.0%
GCTCGTTGGGACCAATCTTG+AGG - chr7.4:6606174-6606193 None:intergenic 55.0%
GGAAACCACCACCCAAGGTT+TGG + chr7.4:6606081-6606100 MS.gene007292:CDS 55.0%
GGTTCGCTGCAAGGCCTTAA+CGG - chr7.4:6606476-6606495 None:intergenic 55.0%
GTACTCTCAAGGCATGGGCT+GGG + chr7.4:6606641-6606660 MS.gene007292:CDS 55.0%
TACATTGGCAGCCCAGGGAA+GGG + chr7.4:6605142-6605161 MS.gene007292:CDS 55.0%
TGAACCGGGGGTTACCATGT+TGG - chr7.4:6606413-6606432 None:intergenic 55.0%
TGGCGTGCTGTCCTCAAGAT+TGG + chr7.4:6606160-6606179 MS.gene007292:CDS 55.0%
TTACATTGGCAGCCCAGGGA+AGG + chr7.4:6605141-6605160 MS.gene007292:CDS 55.0%
! ACCCAAGGTTTGGATGGGCT+TGG + chr7.4:6606091-6606110 MS.gene007292:CDS 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG + chr7.4:6606525-6606544 MS.gene007292:CDS 55.0%
! TTGGGTGGTGGTTTCCCCAT+TGG - chr7.4:6606077-6606096 None:intergenic 55.0%
!! AAGGGCACTGTAGAGCTTGC+TGG + chr7.4:6606049-6606068 MS.gene007292:CDS 55.0%
!! ACTCAGAGGCACCATCACCA+AGG - chr7.4:6606762-6606781 None:intergenic 55.0%
!! CTCAGAGGCACCATCACCAA+GGG - chr7.4:6606761-6606780 None:intergenic 55.0%
!! CTGAGGCAGTCAAAAGCACC+AGG - chr7.4:6605280-6605299 None:intergenic 55.0%
!! CTGGTGCCCGATTTGCTAAG+TGG + chr7.4:6606140-6606159 MS.gene007292:CDS 55.0%
!! GAGGCAGTCAAAAGCACCAG+GGG - chr7.4:6605278-6605297 None:intergenic 55.0%
!! GGTGCTTTTGACTGCCTCAG+TGG + chr7.4:6605280-6605299 MS.gene007292:CDS 55.0%
AGCAGGAACTGCAGCCGGAA+CGG - chr7.4:6606497-6606516 None:intergenic 60.0%
CCCATCCAAACCTTGGGTGG+TGG - chr7.4:6606089-6606108 None:intergenic 60.0%
CGGCAAGGATACCCTTCCCT+GGG - chr7.4:6605156-6605175 None:intergenic 60.0%
GCTGCTTACATTGGCAGCCC+AGG + chr7.4:6605136-6605155 MS.gene007292:CDS 60.0%
! GTCGGTGTCCGTGTCTTCGT+AGG - chr7.4:6604813-6604832 None:intergenic 60.0%
! GTCTGGTGGACAGAGTGAGG+AGG + chr7.4:6606528-6606547 MS.gene007292:CDS 60.0%
! TGGTGGACAGAGTGAGGAGG+AGG + chr7.4:6606531-6606550 MS.gene007292:CDS 60.0%
!! GCAGTCAAAAGCACCAGGGG+TGG - chr7.4:6605275-6605294 None:intergenic 60.0%
AGCCGGAACGGTTCGCTGCA+AGG - chr7.4:6606485-6606504 None:intergenic 65.0%
GCGGCAAGGATACCCTTCCC+TGG - chr7.4:6605157-6605176 None:intergenic 65.0%
GGCCTTGCAGCGAACCGTTC+CGG + chr7.4:6606480-6606499 MS.gene007292:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 6604418 6606810 6604418 ID=MS.gene007292
chr7.4 mRNA 6604418 6606810 6604418 ID=MS.gene007292.t1;Parent=MS.gene007292
chr7.4 exon 6604418 6604445 6604418 ID=MS.gene007292.t1.exon1;Parent=MS.gene007292.t1
chr7.4 CDS 6604418 6604445 6604418 ID=cds.MS.gene007292.t1;Parent=MS.gene007292.t1
chr7.4 exon 6605119 6605346 6605119 ID=MS.gene007292.t1.exon2;Parent=MS.gene007292.t1
chr7.4 CDS 6605119 6605346 6605119 ID=cds.MS.gene007292.t1;Parent=MS.gene007292.t1
chr7.4 exon 6605990 6606810 6605990 ID=MS.gene007292.t1.exon3;Parent=MS.gene007292.t1
chr7.4 CDS 6605990 6606810 6605990 ID=cds.MS.gene007292.t1;Parent=MS.gene007292.t1
Gene Sequence

>MS.gene007292

ATGTCTTTCTTCAAGAGCAAATACCAAGGTATTCTCTCATTTACTCTTGCCTTTCATTGTTAATAATGTCCGATGCTATTATTGTCTCTTAATCTTGTCAGACTTTCTCGAATTGTCATGGATTTTTGCCTCTATCTTTCTTGTTTTCGTCGATTTTGGTTGAACAATTATGCTGTATCAAAATTTGATCCCTTTTAATGCGAATGGTTATTTTATTATAACCCTTTTATTATGCTTCAGACTTTGTGATCTTAAGATTTTGATACCGATCTGTATGTGTTCTGGAGTTTTTTTTTTTTTATTAATAATGGAATACTTTTTGATTCTGTGTGCCCTAAAATAAATTGCTTGATCTACCGGAATGCTTGTGCTCTTGTTTTCATGATATTGAGCCTACGAAGACACGGACACCGACACACCGAAACAGATAATAATTTGAGAAAATGATATAATCTGAGGAGTGTCCGTGCTTCATAGTTGAGCTGATACCATACCTGTAGGTTGGGATTATGCCTGCAAATATGACAAAATAAGAACACTTTATTTGTATTATGTAAGATTTTAATCTTGTTTTGGTTTTGTGATGCCTATCATGACTTTTGATCTGGATTGAAATAAAATTATTAGAGATTAACAAACTGCTATTACGGCAGGATTGAAAAGATATGTAATCTACTAGTTAATGTGCTGATGTATTGCAGATGAACTCATTGCCAATGCTGCTTACATTGGCAGCCCAGGGAAGGGTATCCTTGCCGCTGATGAATCAACTGGTACAATTGGGAAGCGTTTGGCCAGCATTAATGTTGAGAATGTCGAAACAAACAGGCGTGCTCTCCGTGAACTCCTATTCACCACCCCTGGTGCTTTTGACTGCCTCAGTGGTGTGATTTTATATGAGGAAACTCTATACCAAAAGACAGCTGCAGGTACTTATGCTCCTTATTTATGATGTTAGAAAGATATATTTTGCAGTACATGTTAAGTATTTCCTTACTAGGAATCAATGAGCAAAATCTTACTTAAACCTTTCTTATGTATTGACATATGTTCTTAGATATAACTATTCCCTTGTTTTTCAGTTTATGTCTAATGTTCTTGGATTGACTTCTTTGAGCTTATCTAGTCACGTAAGTATTTGTGAGACTGTTAAGAGAGTTTATGATATAAGCTTATGACATATCCATAGTCTCTCTATGATAGCTTTTAAAATCAACATATAACTTATATAAAACAAATTTACTTTATTTTAAGTTGCCATTAGTTGCTGAACTTATTTCCAGAAGTTCTAATAACTAATGAAAACAACTTATAACATATATGAAAATAGTTTGGATACCTTTTCAAAACAGCGTATAACTTATATAAAAACAAATTTACTTTATTTTCAGTCGCCATTGGTTGCCGAGCTTATTTCCAGAAGCTCTAAAGGATAAAAAATGAAAACAACTTATAACTTATATGAAAACAATTTGACTTTAATTTATATTTTGTTATAACTTTAATCATGCCATATTTTTTCAGTCTTCATCGGCTCCTAAACTTTATTTTTTTAAATGTAATTAATTGCAGGAAAACCTTTCGTAGAGTTGTTGAAGGAAGGAGGAGTTCTTCCTGGCATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAACCAATGGGGAAACCACCACCCAAGGTTTGGATGGGCTTGGTCAGCGTTGCCAGAAGTACTATGAAGCTGGTGCCCGATTTGCTAAGTGGCGTGCTGTCCTCAAGATTGGTCCCAACGAGCCATCTGAGCTGTCTATCCACGAGAACGCCTATGGTCTAGCTCGCTATGCTGTCATATGCCAAGAGAATGGCCTAGTTCCTATAGTGGAGCCTGAAATCCTAGTGGACGGATCTCATGACATCAACAAGTGTGCTGAGGTGACTGAACGTGTTCTGGCTGCGTGCTACAAAGCTCTAAGTGATCATCATGTTCTACTCGAAGGAACTCTTTTGAAGCCCAACATGGTAACCCCCGGTTCAGATTCTCAAAAGGTTGCCCCTGAAGTTATAGCCGAATATACCGTTAAGGCCTTGCAGCGAACCGTTCCGGCTGCAGTTCCTGCTGTTGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCAACACTCAACCTCAATGCCATGAACAAATTGAAGGGAAAGAAGCCGTGGGCACTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGTACTCTCAAGGCATGGGCTGGGAAAGATGAAAACATTAAGAAGGCTCAGGAAGCATTCATTTCTAGGTGCAGGGCTAACTCACAAGCAACTTTGGGAACTTATAAAGGTGATTCTACCCTTGGTGATGGTGCCTCTGAGTCTCTCCATGTTAAGGATTACAAATACTAA

Protein sequence

>MS.gene007292.t1

MSFFKSKYQDELIANAAYIGSPGKGILAADESTGTIGKRLASINVENVETNRRALRELLFTTPGAFDCLSGVILYEETLYQKTAAGKPFVELLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLGQRCQKYYEAGARFAKWRAVLKIGPNEPSELSIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDINKCAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSQKVAPEVIAEYTVKALQRTVPAAVPAVVFLSGGQSEEEATLNLNAMNKLKGKKPWALSFSFGRALQQSTLKAWAGKDENIKKAQEAFISRCRANSQATLGTYKGDSTLGDGASESLHVKDYKY