Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007348.t1 | XP_013450049.1 | 97.9 | 1148 | 24 | 0 | 1 | 1148 | 1 | 1148 | 0.00E+00 | 2238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007348.t1 | Q9SCQ2 | 58.7 | 1158 | 452 | 7 | 1 | 1148 | 1 | 1142 | 0.0e+00 | 1319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007348.t1 | A0A072U2X8 | 97.9 | 1148 | 24 | 0 | 1 | 1148 | 1 | 1148 | 0.0e+00 | 2238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007348 | MS.gene47195 | PPI |
| MS.gene007348 | MS.gene55545 | PPI |
| MS.gene007348 | MS.gene074045 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007348.t1 | MTR_7g103210 | 97.909 | 1148 | 24 | 0 | 1 | 1148 | 1 | 1148 | 0.0 | 2335 |
| MS.gene007348.t1 | MTR_7g103210 | 97.985 | 1092 | 22 | 0 | 1 | 1092 | 1 | 1092 | 0.0 | 2222 |
| MS.gene007348.t1 | MTR_2g033040 | 34.489 | 548 | 323 | 9 | 616 | 1148 | 498 | 1024 | 8.21e-100 | 340 |
| MS.gene007348.t1 | MTR_4g094708 | 33.886 | 422 | 238 | 14 | 737 | 1145 | 3362 | 3755 | 5.56e-54 | 208 |
| MS.gene007348.t1 | MTR_4g094705 | 33.886 | 422 | 238 | 14 | 737 | 1145 | 3341 | 3734 | 6.65e-54 | 207 |
| MS.gene007348.t1 | MTR_3g099777 | 36.148 | 379 | 210 | 12 | 780 | 1145 | 3321 | 3680 | 3.19e-53 | 205 |
| MS.gene007348.t1 | MTR_5g066710 | 35.884 | 379 | 211 | 12 | 780 | 1145 | 3293 | 3652 | 1.47e-52 | 203 |
| MS.gene007348.t1 | MTR_2g025830 | 26.525 | 377 | 251 | 7 | 777 | 1145 | 457 | 815 | 1.02e-33 | 140 |
| MS.gene007348.t1 | MTR_4g133120 | 25.333 | 375 | 252 | 7 | 771 | 1135 | 510 | 866 | 5.52e-32 | 135 |
| MS.gene007348.t1 | MTR_2g025810 | 25.895 | 363 | 243 | 8 | 781 | 1135 | 456 | 800 | 8.95e-32 | 134 |
| MS.gene007348.t1 | MTR_2g025790 | 25.575 | 391 | 257 | 10 | 759 | 1135 | 441 | 811 | 3.01e-31 | 132 |
| MS.gene007348.t1 | MTR_2g025950 | 27.215 | 316 | 211 | 5 | 827 | 1135 | 459 | 762 | 5.74e-31 | 131 |
| MS.gene007348.t1 | MTR_1g066940 | 26.609 | 466 | 267 | 12 | 738 | 1148 | 1104 | 1549 | 6.05e-27 | 120 |
| MS.gene007348.t1 | MTR_1g066940 | 25.566 | 442 | 255 | 11 | 738 | 1125 | 1104 | 1525 | 2.33e-22 | 105 |
| MS.gene007348.t1 | MTR_4g073370 | 27.726 | 321 | 192 | 7 | 861 | 1148 | 1568 | 1881 | 3.17e-18 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007348.t1 | AT3G53090 | 58.520 | 1162 | 448 | 8 | 1 | 1148 | 1 | 1142 | 0.0 | 1377 |
| MS.gene007348.t1 | AT3G53090 | 58.520 | 1162 | 448 | 8 | 1 | 1148 | 1 | 1142 | 0.0 | 1377 |
| MS.gene007348.t1 | AT3G17205 | 35.651 | 561 | 298 | 8 | 616 | 1148 | 504 | 1029 | 1.92e-105 | 356 |
| MS.gene007348.t1 | AT3G17205 | 35.651 | 561 | 298 | 8 | 616 | 1148 | 504 | 1029 | 1.92e-105 | 356 |
| MS.gene007348.t1 | AT3G17205 | 35.651 | 561 | 298 | 8 | 616 | 1148 | 490 | 1015 | 1.99e-105 | 356 |
| MS.gene007348.t1 | AT1G70320 | 34.353 | 425 | 232 | 14 | 737 | 1145 | 3262 | 3655 | 4.65e-54 | 208 |
| MS.gene007348.t1 | AT1G55860 | 33.882 | 425 | 234 | 14 | 737 | 1145 | 3285 | 3678 | 1.98e-52 | 203 |
| MS.gene007348.t1 | AT4G12570 | 27.922 | 308 | 201 | 4 | 827 | 1125 | 553 | 848 | 1.10e-27 | 121 |
| MS.gene007348.t1 | AT4G38600 | 28.013 | 307 | 185 | 7 | 871 | 1148 | 1589 | 1888 | 8.97e-20 | 96.7 |
| MS.gene007348.t1 | AT4G38600 | 28.013 | 307 | 185 | 7 | 871 | 1148 | 1589 | 1888 | 8.97e-20 | 96.7 |
| MS.gene007348.t1 | AT5G02880 | 26.000 | 400 | 243 | 11 | 786 | 1148 | 1119 | 1502 | 9.37e-20 | 96.7 |
| MS.gene007348.t1 | AT4G38600 | 28.013 | 307 | 182 | 8 | 871 | 1148 | 1498 | 1794 | 3.89e-18 | 91.3 |
Find 236 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAATGCAGTAATATATT+TGG | 0.190829 | 7.4:-8029937 | None:intergenic |
| TTCTGCTGCTCTCTTCATTC+AGG | 0.214578 | 7.4:+8028526 | MS.gene007348:CDS |
| TTGCGGATGCATTTGGAATT+AGG | 0.230785 | 7.4:-8033579 | None:intergenic |
| CACAAATCAGGAGGACAAAA+TGG | 0.239895 | 7.4:-8032193 | None:intergenic |
| TTCATCATCTTCCCTGAGTC+TGG | 0.242393 | 7.4:+8032303 | MS.gene007348:CDS |
| AACTGTTTACAGGTGATTAA+AGG | 0.254464 | 7.4:+8036721 | MS.gene007348:intron |
| TCTAAGTTTGTCAGATAAAA+TGG | 0.257595 | 7.4:-8030044 | None:intergenic |
| GCCGGACAATCAAAATCTTT+TGG | 0.258101 | 7.4:+8035275 | MS.gene007348:CDS |
| TCAAGAATGCAGTTACTTTC+AGG | 0.261047 | 7.4:+8035181 | MS.gene007348:intron |
| CTTAATGTTGAAAGAGAGTA+TGG | 0.275180 | 7.4:+8029157 | MS.gene007348:intron |
| TGTTCTCGTGGTCCATTACT+TGG | 0.276681 | 7.4:+8036790 | MS.gene007348:CDS |
| GAGTATAGTGAATGCAATTC+AGG | 0.290036 | 7.4:+8029741 | MS.gene007348:CDS |
| ATGTTAATGGTCATCATAAT+AGG | 0.301230 | 7.4:+8032110 | MS.gene007348:CDS |
| GATAATCACACAAGTGAAAA+TGG | 0.303038 | 7.4:+8031616 | MS.gene007348:CDS |
| AGCGTACTTCATAAATTTAC+AGG | 0.304154 | 7.4:+8031703 | MS.gene007348:CDS |
| GGCCTATTCTCACCTGCTTT+TGG | 0.304609 | 7.4:+8031888 | MS.gene007348:CDS |
| ATTTAGATCTTTCAGATGTA+TGG | 0.307807 | 7.4:+8031791 | MS.gene007348:CDS |
| TTGCATGTGATGTCCCTCTT+TGG | 0.310830 | 7.4:+8037854 | MS.gene007348:CDS |
| TTGGAGAGCCTGAACTCTTC+TGG | 0.312829 | 7.4:+8029390 | MS.gene007348:CDS |
| CCGGGGTGATGACGGCAAAT+TGG | 0.321818 | 7.4:+8029253 | MS.gene007348:CDS |
| AGAAGCATACAACGCTCTTT+TGG | 0.337506 | 7.4:-8036751 | None:intergenic |
| CTCAATACCCTAGTATATAA+TGG | 0.349634 | 7.4:+8032079 | MS.gene007348:CDS |
| GTTCTTTAGTAGTACCTTAA+GGG | 0.352111 | 7.4:-8037935 | None:intergenic |
| GTCCCTCTTTGGGCGACAAT+TGG | 0.352445 | 7.4:+8037865 | MS.gene007348:CDS |
| TGGCCTTACGGAGGCTGGTC+TGG | 0.358087 | 7.4:+8033354 | MS.gene007348:CDS |
| CAACCGACGATAGAAGAATT+TGG | 0.359189 | 7.4:+8029670 | MS.gene007348:CDS |
| GAATAGAGATGCCACTAAAA+AGG | 0.359367 | 7.4:+8031375 | MS.gene007348:CDS |
| TAGAACTCATGAAATTTATT+CGG | 0.360447 | 7.4:+8032261 | MS.gene007348:CDS |
| GGATAAAGCTTCACGCAAAA+TGG | 0.361218 | 7.4:+8033189 | MS.gene007348:CDS |
| CCTTGTGGGCCATGCCTCAT+AGG | 0.364074 | 7.4:-8031823 | None:intergenic |
| AACTTTATATGTCTAGCAAC+AGG | 0.365146 | 7.4:+8031103 | MS.gene007348:CDS |
| CAATGCTAGCGAGTTTAATC+AGG | 0.366542 | 7.4:+8034904 | MS.gene007348:CDS |
| AGAAATTCTTGTCTCTTTCA+AGG | 0.369439 | 7.4:+8031051 | MS.gene007348:CDS |
| TGTCATACATGGATCAATTT+AGG | 0.371550 | 7.4:+8031308 | MS.gene007348:CDS |
| ACGGAGGCTGGTCTGGACTA+TGG | 0.375116 | 7.4:+8033361 | MS.gene007348:CDS |
| TTTAACGGAGATGTCGGATT+TGG | 0.375417 | 7.4:+8031021 | MS.gene007348:CDS |
| TTGAACTTTCAGTATCAGTT+TGG | 0.375534 | 7.4:-8031267 | None:intergenic |
| CATACCTTGTGGATGGTAAA+TGG | 0.375807 | 7.4:-8036832 | None:intergenic |
| GTAATGTTAACTGATCTAAA+AGG | 0.377030 | 7.4:+8029810 | MS.gene007348:CDS |
| GCACAGCGACTTTCTTCTCT+TGG | 0.385657 | 7.4:+8029702 | MS.gene007348:CDS |
| TCTGATAGTGATTTGAGAAA+TGG | 0.385958 | 7.4:-8029317 | None:intergenic |
| ACTGTTACTGAAGAATCATT+TGG | 0.387330 | 7.4:+8034605 | MS.gene007348:CDS |
| TGATTGACATTCAATATATC+AGG | 0.389668 | 7.4:-8030077 | None:intergenic |
| CACTTGATCCAGAGCTATAC+AGG | 0.390708 | 7.4:+8033752 | MS.gene007348:CDS |
| GGGACAAGCCATTATATACT+AGG | 0.392459 | 7.4:-8032087 | None:intergenic |
| AATGGCTTGTCCCATGTTAA+TGG | 0.393956 | 7.4:+8032097 | MS.gene007348:CDS |
| AAGTACGCTGACCCACTTAC+TGG | 0.398706 | 7.4:-8031689 | None:intergenic |
| AGTAGTTACCTCTCTTCAAA+TGG | 0.401476 | 7.4:-8032358 | None:intergenic |
| CTGGATTTCTCGTGAGATTG+TGG | 0.403174 | 7.4:+8031548 | MS.gene007348:CDS |
| GATTTGCTTTACAATCTTGT+TGG | 0.404001 | 7.4:+8029371 | MS.gene007348:CDS |
| CTGGGTGATAGCTTTCGTTT+TGG | 0.404427 | 7.4:-8029970 | None:intergenic |
| TGGATTTCTCGTGAGATTGT+GGG | 0.407298 | 7.4:+8031549 | MS.gene007348:CDS |
| CTGAAGAATCATTTGGCAAA+AGG | 0.407837 | 7.4:+8034612 | MS.gene007348:CDS |
| CGTTGCTGCTCTAACTTGAA+TGG | 0.409171 | 7.4:-8032040 | None:intergenic |
| CGGGGTCATATTGTTGAAGA+TGG | 0.423761 | 7.4:+8033262 | MS.gene007348:CDS |
| TGCATGTGATGTCCCTCTTT+GGG | 0.424636 | 7.4:+8037855 | MS.gene007348:CDS |
| CTCTGCAGCTTCAGCAGGAG+TGG | 0.425427 | 7.4:+8029208 | MS.gene007348:CDS |
| CATTGAGATTGTAGTACGTC+GGG | 0.425547 | 7.4:+8033243 | MS.gene007348:CDS |
| CTTCAGATGATTGAGTTCCT+TGG | 0.426636 | 7.4:+8033619 | MS.gene007348:CDS |
| TATATCTAATGACTATTCCT+TGG | 0.428488 | 7.4:+8030120 | MS.gene007348:CDS |
| GGAATATACCAGAAGAGTTC+AGG | 0.428710 | 7.4:-8029398 | None:intergenic |
| GTTCTAGCAGCAACTGCAAC+TGG | 0.429510 | 7.4:-8032244 | None:intergenic |
| AACTTGCTACAATACCCTTA+AGG | 0.432752 | 7.4:+8037921 | MS.gene007348:CDS |
| GAGTTCCTTGGAAGAGTAGT+TGG | 0.440856 | 7.4:+8033631 | MS.gene007348:CDS |
| GTTGGTAAAGCTCTTTATGA+AGG | 0.444314 | 7.4:+8033649 | MS.gene007348:CDS |
| GTAAAGATGGGGCCAGTAAG+TGG | 0.446385 | 7.4:+8031677 | MS.gene007348:CDS |
| GAACTCAACTAAACCTTTCA+CGG | 0.448125 | 7.4:-8029877 | None:intergenic |
| TAATGGACCACGAGAACAAC+TGG | 0.449832 | 7.4:-8036785 | None:intergenic |
| TTTATCTGACAAACTTAGAT+GGG | 0.450283 | 7.4:+8030048 | MS.gene007348:CDS |
| AATGATAGCATGTTAAGAAC+TGG | 0.451530 | 7.4:-8031520 | None:intergenic |
| GCAGGAGAAAGCCACAAATC+AGG | 0.451926 | 7.4:-8032205 | None:intergenic |
| GATTTACCTTCACATACATA+AGG | 0.453949 | 7.4:-8033777 | None:intergenic |
| TGCCAAATATATTACTGCAT+TGG | 0.454740 | 7.4:+8029935 | MS.gene007348:CDS |
| CCTCTTTGGGCGACAATTGG+AGG | 0.460837 | 7.4:+8037868 | MS.gene007348:CDS |
| ATGACATTATTAACGACTCA+TGG | 0.464243 | 7.4:-8031291 | None:intergenic |
| ATCTCAATGGCTCGTGAACC+AGG | 0.465594 | 7.4:-8033229 | None:intergenic |
| GGTTGCTCTGCAGCTTCAGC+AGG | 0.469167 | 7.4:+8029203 | MS.gene007348:CDS |
| TTCGACAATTAAATTCGCTT+GGG | 0.470304 | 7.4:+8033287 | MS.gene007348:CDS |
| TATGCTATCACTTCAAATGC+CGG | 0.471998 | 7.4:+8038369 | MS.gene007348:CDS |
| TTTAGATCTTTCAGATGTAT+GGG | 0.474644 | 7.4:+8031792 | MS.gene007348:CDS |
| ATTCACTGATGACAAAAGAT+TGG | 0.475071 | 7.4:-8031356 | None:intergenic |
| AACATGCTATCATTTACTCC+TGG | 0.476548 | 7.4:+8031529 | MS.gene007348:CDS |
| GAGAAGAAAGTCGCTGTGCC+TGG | 0.479684 | 7.4:-8029698 | None:intergenic |
| TTTCGACAATTAAATTCGCT+TGG | 0.480501 | 7.4:+8033286 | MS.gene007348:CDS |
| TTCAAGGCTATTCCACCAGT+TGG | 0.482014 | 7.4:+8031067 | MS.gene007348:CDS |
| CTGATAGTGATTTGAGAAAT+GGG | 0.483024 | 7.4:-8029316 | None:intergenic |
| AAAGGTTTAGTTGAGTTCAC+AGG | 0.485967 | 7.4:+8029882 | MS.gene007348:CDS |
| AGGCTATTCCACCAGTTGGT+TGG | 0.486113 | 7.4:+8031071 | MS.gene007348:CDS |
| ATAAGGCTCCTGTATAGCTC+TGG | 0.488201 | 7.4:-8033760 | None:intergenic |
| CACAATCTCACGAGAAATCC+AGG | 0.488580 | 7.4:-8031547 | None:intergenic |
| TACTTCGATCTCAAACAGTC+TGG | 0.488854 | 7.4:+8031402 | MS.gene007348:CDS |
| TGGGTGACAAAGAACAGAAA+TGG | 0.489733 | 7.4:-8029297 | None:intergenic |
| CTTGTCTTGATAATATTGAA+TGG | 0.490541 | 7.4:+8031224 | MS.gene007348:CDS |
| CTTACAATTAATGTATGAAA+GGG | 0.491261 | 7.4:+8032159 | MS.gene007348:CDS |
| AGCTTTGCTCTCAAAGTGCC+TGG | 0.492135 | 7.4:-8038342 | None:intergenic |
| GAGAGTATGGAGGCGCTTCA+AGG | 0.494130 | 7.4:+8029170 | MS.gene007348:intron |
| GTTTCGTGAATTCATCAAGA+TGG | 0.495419 | 7.4:+8033168 | MS.gene007348:CDS |
| CACTCTAGCAGAAAGCCTAC+TGG | 0.496927 | 7.4:+8031201 | MS.gene007348:CDS |
| GAAAATAACTCTGTAGACTC+TGG | 0.498822 | 7.4:+8031130 | MS.gene007348:CDS |
| TCATCATCTTCCCTGAGTCT+GGG | 0.499683 | 7.4:+8032304 | MS.gene007348:CDS |
| AAATCAAGAAAGTTCAAATC+CGG | 0.499957 | 7.4:-8038388 | None:intergenic |
| ATGATGAATCATCAGATCTC+AGG | 0.500193 | 7.4:-8032288 | None:intergenic |
| TGTCAGTGAATGTGGCCTTA+CGG | 0.500904 | 7.4:+8033342 | MS.gene007348:CDS |
| GTGGTTACAGTGAGGGGAGC+CGG | 0.502385 | 7.4:+8035257 | MS.gene007348:CDS |
| AGACTACAAACTCAACCAAC+AGG | 0.504373 | 7.4:+8034715 | MS.gene007348:CDS |
| GCGCTTCAAGGTTACAAAGA+TGG | 0.505805 | 7.4:+8029182 | MS.gene007348:CDS |
| TTCGCGAGAGACCAACCAAC+TGG | 0.505914 | 7.4:-8031082 | None:intergenic |
| GGTGCAGAGTGACTGCCAAT+TGG | 0.506632 | 7.4:-8031757 | None:intergenic |
| CATGTGGTTGAGCTCAAGTC+TGG | 0.507203 | 7.4:+8034635 | MS.gene007348:CDS |
| TAGGAGGCTGTCTGAAGTTG+AGG | 0.507555 | 7.4:-8033560 | None:intergenic |
| ATAGATTTGTGCTTTAAAGC+AGG | 0.512627 | 7.4:-8030173 | None:intergenic |
| AGATGCCATTGCTGACAGAC+AGG | 0.514022 | 7.4:-8031331 | None:intergenic |
| GTAGTTACCTCTCTTCAAAT+GGG | 0.514857 | 7.4:-8032357 | None:intergenic |
| ACATCGGTGAACAGTTATAC+CGG | 0.517390 | 7.4:+8029234 | MS.gene007348:CDS |
| CTCTGGAGACAAACATATGT+CGG | 0.518715 | 7.4:+8031594 | MS.gene007348:CDS |
| GAATGTGGCCTTACGGAGGC+TGG | 0.522480 | 7.4:+8033349 | MS.gene007348:CDS |
| CAGTTATACCGGGGTGATGA+CGG | 0.523229 | 7.4:+8029245 | MS.gene007348:CDS |
| AACCAAAAGCAGGTGAGAAT+AGG | 0.523489 | 7.4:-8031890 | None:intergenic |
| ACAAATCAGGAGGACAAAAT+GGG | 0.523633 | 7.4:-8032192 | None:intergenic |
| AGATCTAAATTGACTCTGCT+TGG | 0.525378 | 7.4:-8031778 | None:intergenic |
| GCTTACAATTAATGTATGAA+AGG | 0.526119 | 7.4:+8032158 | MS.gene007348:CDS |
| CTGATCTTATCTCTCCGTCC+TGG | 0.528038 | 7.4:+8034870 | MS.gene007348:CDS |
| AAAGCTTCACGCAAAATGGC+TGG | 0.528685 | 7.4:+8033193 | MS.gene007348:CDS |
| GTGTTTACGAGGTGCATCCA+TGG | 0.529616 | 7.4:-8028305 | None:intergenic |
| TCATTCATGCAGAACTATGA+TGG | 0.532632 | 7.4:+8034554 | MS.gene007348:intron |
| CAGCAACTGCAACTGGTGGC+CGG | 0.536160 | 7.4:-8032237 | None:intergenic |
| CCTATGAGGCATGGCCCACA+AGG | 0.537527 | 7.4:+8031823 | MS.gene007348:CDS |
| ACAGACCGCACAGATCCAAT+TGG | 0.538409 | 7.4:+8031742 | MS.gene007348:CDS |
| AGTATAGTGAATGCAATTCA+GGG | 0.540454 | 7.4:+8029742 | MS.gene007348:CDS |
| TACAGCTTCCCACATACAAA+CGG | 0.541277 | 7.4:+8038319 | MS.gene007348:intron |
| TGGGAAAACATGGGGAGTCA+TGG | 0.541754 | 7.4:-8032338 | None:intergenic |
| CGGATGCATTTGGAATTAGG+AGG | 0.541906 | 7.4:-8033576 | None:intergenic |
| AGTGCCTGGCCGTTTGTATG+TGG | 0.542565 | 7.4:-8038328 | None:intergenic |
| GATGCAGATTTAGCCGTGAA+AGG | 0.544292 | 7.4:+8029864 | MS.gene007348:CDS |
| GTTCTCGTGGTCCATTACTT+GGG | 0.545099 | 7.4:+8036791 | MS.gene007348:CDS |
| GACTCTGGATCCTTCAGTCA+AGG | 0.546796 | 7.4:+8031145 | MS.gene007348:CDS |
| TTGTAGCAAGTTGAAGCTGA+TGG | 0.548257 | 7.4:-8037910 | None:intergenic |
| GTTGAGAGGAGCGAGTGCGA+AGG | 0.550427 | 7.4:+8028430 | MS.gene007348:CDS |
| TCATCATAATAGGCCCCTCA+TGG | 0.553272 | 7.4:+8032120 | MS.gene007348:CDS |
| TCTCTTCAAATGGGAAAACA+TGG | 0.553838 | 7.4:-8032348 | None:intergenic |
| ACTGGTAATGATCCACGTAC+TGG | 0.554528 | 7.4:-8031502 | None:intergenic |
| GTCGTTAATAATGTCATACA+TGG | 0.555560 | 7.4:+8031297 | MS.gene007348:CDS |
| AAAAGTAACACGCGATACAC+TGG | 0.557806 | 7.4:+8035235 | MS.gene007348:CDS |
| GCTGGTGAAATTTCTGAACC+TGG | 0.558191 | 7.4:+8033211 | MS.gene007348:CDS |
| ACTCCAAATTCTTCTATCGT+CGG | 0.558536 | 7.4:-8029673 | None:intergenic |
| TTATAACAGAGCCCAGACTC+AGG | 0.559482 | 7.4:-8032315 | None:intergenic |
| TGTTAACTGATCTAAAAGGA+TGG | 0.559734 | 7.4:+8029814 | MS.gene007348:CDS |
| CCGACGTACTACAATCTCAA+TGG | 0.559916 | 7.4:-8033242 | None:intergenic |
| CTCCAATTGTCGCCCAAAGA+GGG | 0.560123 | 7.4:-8037867 | None:intergenic |
| TCCTTCAGTCAAGGTTTAGA+CGG | 0.561797 | 7.4:+8031154 | MS.gene007348:CDS |
| CTCTTCAAATGGGAAAACAT+GGG | 0.562504 | 7.4:-8032347 | None:intergenic |
| AAGTATTTGAACCCAAGTAA+TGG | 0.563712 | 7.4:-8036802 | None:intergenic |
| TATTATGATGACCATTAACA+TGG | 0.564426 | 7.4:-8032108 | None:intergenic |
| TGACATTATTAACGACTCAT+GGG | 0.568612 | 7.4:-8031290 | None:intergenic |
| CATCGGTGAACAGTTATACC+GGG | 0.569550 | 7.4:+8029235 | MS.gene007348:CDS |
| TTTGTCACCAGTTGTTCTCG+TGG | 0.574734 | 7.4:+8036778 | MS.gene007348:CDS |
| TCTGCAGCTTCAGCAGGAGT+GGG | 0.576891 | 7.4:+8029209 | MS.gene007348:CDS |
| CTTTACCAACTACTCTTCCA+AGG | 0.577236 | 7.4:-8033636 | None:intergenic |
| CCAAGATCATACCTTGTGGA+TGG | 0.577657 | 7.4:-8036839 | None:intergenic |
| TTGATTCAGGTATCGTTGAG+AGG | 0.578344 | 7.4:+8028416 | MS.gene007348:intron |
| GGATTTCAAATAATTTGTTG+AGG | 0.578553 | 7.4:+8029274 | MS.gene007348:CDS |
| CCTCCAATTGTCGCCCAAAG+AGG | 0.580527 | 7.4:-8037868 | None:intergenic |
| AGTCCAGACCAGCCTCCGTA+AGG | 0.581216 | 7.4:-8033357 | None:intergenic |
| CTTCCCACATACAAACGGCC+AGG | 0.581720 | 7.4:+8038324 | MS.gene007348:CDS |
| GTATCATTTGTCAGTGAATG+TGG | 0.581799 | 7.4:+8033334 | MS.gene007348:CDS |
| ACTGTTTGAGATCGAAGTAT+CGG | 0.583328 | 7.4:-8031398 | None:intergenic |
| ACTGATCTAAAAGGATGGAA+AGG | 0.584473 | 7.4:+8029819 | MS.gene007348:CDS |
| TGTCATCAAGAACCAAAAGC+AGG | 0.586888 | 7.4:-8031900 | None:intergenic |
| TAGAAGAATTTGGAGTTACC+AGG | 0.587765 | 7.4:+8029680 | MS.gene007348:CDS |
| GGACAAGCCATTATATACTA+GGG | 0.588422 | 7.4:-8032086 | None:intergenic |
| GAGATTGTGGGGTGAACTTG+AGG | 0.588635 | 7.4:+8031561 | MS.gene007348:CDS |
| ATTCACTGACAAATGATACA+TGG | 0.589415 | 7.4:-8033330 | None:intergenic |
| TTAGGCCTGTCTGTCAGCAA+TGG | 0.593042 | 7.4:+8031326 | MS.gene007348:CDS |
| ATCATTTGGCAAAAGGCATG+TGG | 0.593574 | 7.4:+8034619 | MS.gene007348:CDS |
| TACACTGGTGGTTACAGTGA+GGG | 0.594750 | 7.4:+8035250 | MS.gene007348:CDS |
| TTGAATAATTTCAACCAGGA+CGG | 0.595516 | 7.4:-8034884 | None:intergenic |
| TAAAGATGGGGCCAGTAAGT+GGG | 0.596487 | 7.4:+8031678 | MS.gene007348:CDS |
| CTGCTAGAGTGACAATAACA+TGG | 0.601136 | 7.4:-8031189 | None:intergenic |
| TGTTTACGAGGTGCATCCAT+GGG | 0.601166 | 7.4:-8028304 | None:intergenic |
| TCGAGACGATCTTCTTCAGA+AGG | 0.602388 | 7.4:+8028460 | MS.gene007348:CDS |
| TTATCTGACAAACTTAGATG+GGG | 0.604181 | 7.4:+8030049 | MS.gene007348:CDS |
| TATGGGACATAGAACCTATG+AGG | 0.604881 | 7.4:+8031809 | MS.gene007348:CDS |
| TTGTTCAAAAGCTATTGGGA+CGG | 0.605651 | 7.4:+8033704 | MS.gene007348:CDS |
| CAGGAGCCTTATGTATGTGA+AGG | 0.607275 | 7.4:+8033771 | MS.gene007348:CDS |
| AGAATGCAGTTACTTTCAGG+TGG | 0.609514 | 7.4:+8035184 | MS.gene007348:intron |
| ACCGTCTAAACCTTGACTGA+AGG | 0.610362 | 7.4:-8031155 | None:intergenic |
| TTTCTCAAATCACTATCAGA+AGG | 0.613385 | 7.4:+8029320 | MS.gene007348:CDS |
| AAGGTTTAGTTGAGTTCACA+GGG | 0.617416 | 7.4:+8029883 | MS.gene007348:CDS |
| TATAACAGAGCCCAGACTCA+GGG | 0.618502 | 7.4:-8032314 | None:intergenic |
| GACATAGAACCTATGAGGCA+TGG | 0.618981 | 7.4:+8031814 | MS.gene007348:CDS |
| TCAGCAGGAGTGGGAGACAT+CGG | 0.622033 | 7.4:+8029218 | MS.gene007348:CDS |
| TTCACAGGGAGTAATAAAAG+TGG | 0.623278 | 7.4:+8029897 | MS.gene007348:CDS |
| ACTGACAAATGATACATGGA+TGG | 0.625642 | 7.4:-8033326 | None:intergenic |
| AAAGCAGGTAGAAGAACATG+TGG | 0.628339 | 7.4:-8030158 | None:intergenic |
| CATTAATTGTAAGCATCTGA+CGG | 0.629899 | 7.4:-8032149 | None:intergenic |
| CCATTGAGATTGTAGTACGT+CGG | 0.629993 | 7.4:+8033242 | MS.gene007348:CDS |
| GCGAGAGACCAACCAACTGG+TGG | 0.633643 | 7.4:-8031079 | None:intergenic |
| GGATTTCTCGTGAGATTGTG+GGG | 0.634990 | 7.4:+8031550 | MS.gene007348:CDS |
| TCTTCAAATGGGAAAACATG+GGG | 0.636883 | 7.4:-8032346 | None:intergenic |
| CCAATTTGCCGTCATCACCC+CGG | 0.639075 | 7.4:-8029253 | None:intergenic |
| ATCTGACGGCACAATCCATG+AGG | 0.640617 | 7.4:-8032135 | None:intergenic |
| ACACTGGTGGTTACAGTGAG+GGG | 0.641000 | 7.4:+8035251 | MS.gene007348:CDS |
| GTGCCTGGCCGTTTGTATGT+GGG | 0.641728 | 7.4:-8038327 | None:intergenic |
| GAACTATGATGGTGATGTCA+AGG | 0.644549 | 7.4:+8034565 | MS.gene007348:intron |
| TCTGACGGCACAATCCATGA+GGG | 0.645631 | 7.4:-8032134 | None:intergenic |
| TTCTTTGTTTAGATTCAGAG+CGG | 0.647615 | 7.4:+8029622 | MS.gene007348:intron |
| AAGAGTACCTGGTGTTTACG+AGG | 0.649609 | 7.4:-8028316 | None:intergenic |
| GGAGAAAGCCACAAATCAGG+AGG | 0.650338 | 7.4:-8032202 | None:intergenic |
| GGATGCACCTCGTAAACACC+AGG | 0.650963 | 7.4:+8028309 | MS.gene007348:CDS |
| GAGGCTGGTCTGGACTATGG+TGG | 0.652496 | 7.4:+8033364 | MS.gene007348:CDS |
| GGGACATGTTGCACAAACCA+AGG | 0.654107 | 7.4:-8030137 | None:intergenic |
| CTAGCAGCAACTGCAACTGG+TGG | 0.656060 | 7.4:-8032241 | None:intergenic |
| ACTTTATATGTCTAGCAACA+GGG | 0.660742 | 7.4:+8031104 | MS.gene007348:CDS |
| TATTATCAAGACAAGCCAGT+AGG | 0.662398 | 7.4:-8031216 | None:intergenic |
| TCAGCTTTGAGTCCAGTACG+TGG | 0.664638 | 7.4:+8031490 | MS.gene007348:CDS |
| GTGGTTGAGCTCAAGTCTGG+TGG | 0.664894 | 7.4:+8034638 | MS.gene007348:CDS |
| CAAAACGAAAGCTATCACCC+AGG | 0.664916 | 7.4:+8029971 | MS.gene007348:CDS |
| ATTATGATGACCATTAACAT+GGG | 0.665086 | 7.4:-8032107 | None:intergenic |
| AGCATTGAATAATTTCAACC+AGG | 0.665959 | 7.4:-8034888 | None:intergenic |
| TGAATCATCAGATCTCAGGT+TGG | 0.672269 | 7.4:-8032284 | None:intergenic |
| GTGCAATAACTTTAGCTGTG+CGG | 0.677849 | 7.4:+8030021 | MS.gene007348:CDS |
| GATGCAGTACATACATGCGA+TGG | 0.682992 | 7.4:+8034691 | MS.gene007348:CDS |
| GTATAGTGAATGCAATTCAG+GGG | 0.687591 | 7.4:+8029743 | MS.gene007348:CDS |
| CTGACGGCACAATCCATGAG+GGG | 0.689338 | 7.4:-8032133 | None:intergenic |
| GACTGCCAATTGGATCTGTG+CGG | 0.694175 | 7.4:-8031747 | None:intergenic |
| CGGCTAAATCTGCATCTAAG+CGG | 0.695268 | 7.4:-8029857 | None:intergenic |
| TTGGAGGACAAGATGTAGAG+CGG | 0.695288 | 7.4:+8037884 | MS.gene007348:CDS |
| AAGCAGGTAGAAGAACATGT+GGG | 0.703676 | 7.4:-8030157 | None:intergenic |
| CAGTGAATGTGGCCTTACGG+AGG | 0.706179 | 7.4:+8033345 | MS.gene007348:CDS |
| AGTAACACGCGATACACTGG+TGG | 0.707755 | 7.4:+8035238 | MS.gene007348:CDS |
| ATTGAGATTGTAGTACGTCG+GGG | 0.710397 | 7.4:+8033244 | MS.gene007348:CDS |
| GCCACCATTTACCATCCACA+AGG | 0.717521 | 7.4:+8036828 | MS.gene007348:CDS |
| ATCGGTGAACAGTTATACCG+GGG | 0.727045 | 7.4:+8029236 | MS.gene007348:CDS |
| AATGTTGAAAGAGAGTATGG+AGG | 0.728338 | 7.4:+8029160 | MS.gene007348:intron |
| ATACACTGGTGGTTACAGTG+AGG | 0.738211 | 7.4:+8035249 | MS.gene007348:CDS |
| ACCTTGTGGATGGTAAATGG+TGG | 0.753265 | 7.4:-8036829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 8028307 | 8038407 | 8028307 | ID=MS.gene007348 |
| chr7.4 | mRNA | 8028307 | 8038407 | 8028307 | ID=MS.gene007348.t1;Parent=MS.gene007348 |
| chr7.4 | exon | 8028307 | 8028330 | 8028307 | ID=MS.gene007348.t1.exon1;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8028307 | 8028330 | 8028307 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8028425 | 8028547 | 8028425 | ID=MS.gene007348.t1.exon2;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8028425 | 8028547 | 8028425 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8029171 | 8029411 | 8029171 | ID=MS.gene007348.t1.exon3;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8029171 | 8029411 | 8029171 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8029634 | 8030223 | 8029634 | ID=MS.gene007348.t1.exon4;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8029634 | 8030223 | 8029634 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8031004 | 8031942 | 8031004 | ID=MS.gene007348.t1.exon5;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8031004 | 8031942 | 8031004 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8032037 | 8032371 | 8032037 | ID=MS.gene007348.t1.exon6;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8032037 | 8032371 | 8032037 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8033159 | 8033437 | 8033159 | ID=MS.gene007348.t1.exon7;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8033159 | 8033437 | 8033159 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8033540 | 8033792 | 8033540 | ID=MS.gene007348.t1.exon8;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8033540 | 8033792 | 8033540 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8034566 | 8034736 | 8034566 | ID=MS.gene007348.t1.exon9;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8034566 | 8034736 | 8034566 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8034833 | 8034925 | 8034833 | ID=MS.gene007348.t1.exon10;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8034833 | 8034925 | 8034833 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8035193 | 8035300 | 8035193 | ID=MS.gene007348.t1.exon11;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8035193 | 8035300 | 8035193 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8036733 | 8036849 | 8036733 | ID=MS.gene007348.t1.exon12;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8036733 | 8036849 | 8036733 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8037853 | 8037942 | 8037853 | ID=MS.gene007348.t1.exon13;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8037853 | 8037942 | 8037853 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| chr7.4 | exon | 8038324 | 8038407 | 8038324 | ID=MS.gene007348.t1.exon14;Parent=MS.gene007348.t1 |
| chr7.4 | CDS | 8038324 | 8038407 | 8038324 | ID=cds.MS.gene007348.t1;Parent=MS.gene007348.t1 |
| Gene Sequence |
| Protein sequence |
