AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55545


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55545.t1 MTR_6g025320 100.000 149 0 0 1 149 1 149 2.20e-106 300
MS.gene55545.t1 MTR_5g088320 99.329 149 1 0 1 149 1 149 8.38e-106 298
MS.gene55545.t1 MTR_7g087610 98.658 149 2 0 1 149 1 149 2.26e-104 295
MS.gene55545.t1 MTR_1g041285 78.378 148 32 0 1 148 1 148 3.37e-83 241
MS.gene55545.t1 MTR_1g041285 47.692 65 34 0 85 149 12 76 5.28e-12 60.1
MS.gene55545.t1 MTR_1g076650 77.703 148 33 0 1 148 1 148 5.58e-83 241
MS.gene55545.t1 MTR_1g076650 45.070 71 36 1 82 149 6 76 2.84e-11 58.2
MS.gene55545.t1 MTR_0168s0120 100.000 113 0 0 37 149 1 113 1.13e-78 228
MS.gene55545.t1 MTR_0168s0120 45.455 77 41 1 1 76 37 113 5.67e-14 64.3
MS.gene55545.t1 MTR_6g025320 100.000 113 0 0 37 149 1 113 1.13e-78 228
MS.gene55545.t1 MTR_6g025320 45.455 77 41 1 1 76 37 113 5.67e-14 64.3
MS.gene55545.t1 MTR_7g115040 62.838 148 55 0 1 148 1 148 2.22e-57 176
MS.gene55545.t1 MTR_1g071150 58.503 147 60 1 1 147 1 146 4.38e-57 175
MS.gene55545.t1 MTR_1g071150 40.260 77 45 1 73 149 1 76 6.47e-12 59.7
MS.gene55545.t1 MTR_5g011850 51.007 149 71 1 1 149 1 147 4.66e-49 154
MS.gene55545.t1 MTR_3g055570 53.425 146 53 1 1 146 41 171 2.87e-43 141
MS.gene55545.t1 MTR_8g066630 45.946 148 77 1 4 148 9 156 3.36e-43 140
MS.gene55545.t1 MTR_7g074020 45.455 143 78 0 4 146 22 164 4.77e-39 130
MS.gene55545.t1 MTR_7g074020 46.970 66 35 0 84 149 29 94 3.17e-12 61.2
MS.gene55545.t1 MTR_1g032070 47.945 146 72 1 4 149 42 183 3.79e-37 126
MS.gene55545.t1 MTR_6g007613 44.056 143 80 0 4 146 21 163 4.01e-37 125
MS.gene55545.t1 MTR_6g007613 43.421 76 43 0 74 149 18 93 2.05e-12 61.6
MS.gene55545.t1 MTR_3g055520 46.897 145 62 1 1 145 41 170 1.35e-36 124
MS.gene55545.t1 MTR_4g112460 43.262 141 78 1 8 146 7 147 1.65e-36 123
MS.gene55545.t1 MTR_4g112460 46.875 64 34 0 16 79 90 153 1.40e-12 62.0
MS.gene55545.t1 MTR_7g074020 47.244 127 67 0 4 130 22 148 2.65e-35 120
MS.gene55545.t1 MTR_7g074020 46.970 66 35 0 84 149 29 94 1.94e-12 61.6
MS.gene55545.t1 MTR_3g055585 46.207 145 63 1 1 145 41 170 1.86e-34 118
MS.gene55545.t1 MTR_8g069915 42.657 143 80 1 6 146 6 148 4.90e-34 117
MS.gene55545.t1 MTR_8g105230 48.855 131 67 0 12 142 36 166 9.08e-34 117
MS.gene55545.t1 MTR_8g105230 54.688 64 29 0 6 69 103 166 4.55e-16 71.6
MS.gene55545.t1 MTR_6g007613 45.669 127 69 0 4 130 21 147 1.98e-33 115
MS.gene55545.t1 MTR_6g007613 43.421 76 43 0 74 149 18 93 1.04e-12 62.0
MS.gene55545.t1 MTR_4g067270 44.928 138 74 1 11 146 4 141 7.73e-33 114
MS.gene55545.t1 MTR_4g067270 44.118 68 36 1 8 73 74 141 8.98e-11 57.0
MS.gene55545.t1 MTR_8g107110 44.444 135 74 1 12 146 24 157 1.01e-31 111
MS.gene55545.t1 MTR_8g107110 43.284 67 38 0 7 73 91 157 2.74e-12 61.2
MS.gene55545.t1 MTR_3g055490 68.000 75 24 0 1 75 41 115 4.22e-31 108
MS.gene55545.t1 MTR_5g079340 42.963 135 76 1 12 146 4 137 1.13e-30 107
MS.gene55545.t1 MTR_5g079340 39.706 68 41 0 8 75 72 139 3.77e-11 57.8
MS.gene55545.t1 MTR_3g067610 42.963 135 73 1 12 146 5 135 1.58e-28 102
MS.gene55545.t1 MTR_3g067610 43.750 64 36 0 12 75 74 137 6.61e-13 62.4
MS.gene55545.t1 MTR_1g046950 39.416 137 81 1 12 146 4 140 3.74e-28 101
MS.gene55545.t1 MTR_1g046950 43.750 64 36 0 12 75 79 142 3.29e-12 60.5
MS.gene55545.t1 MTR_6g079570 40.288 139 81 2 12 149 26 163 4.02e-27 100
MS.gene55545.t1 MTR_6g079570 43.836 73 41 0 6 78 93 165 6.88e-13 63.2
MS.gene55545.t1 MTR_5g092810 40.268 149 85 3 1 148 386 531 8.66e-27 104
MS.gene55545.t1 MTR_7g106710 41.096 146 83 2 1 146 429 571 9.24e-27 104
MS.gene55545.t1 MTR_1g047100 37.681 138 85 1 12 148 4 141 1.13e-26 97.8
MS.gene55545.t1 MTR_7g089760 44.286 140 76 1 11 148 4 143 1.17e-26 98.2
MS.gene55545.t1 MTR_7g075040 40.000 145 78 3 11 146 46 190 2.36e-26 98.6
MS.gene55545.t1 MTR_7g090450 40.816 147 82 3 5 146 66 212 3.10e-26 99.0
MS.gene55545.t1 MTR_4g132070 39.456 147 85 3 1 146 385 528 3.47e-26 103
MS.gene55545.t1 MTR_8g036075 39.189 148 82 3 7 146 44 191 1.55e-25 96.7
MS.gene55545.t1 MTR_1g096490 39.865 148 82 3 1 146 324 466 2.01e-25 100
MS.gene55545.t1 MTR_8g095440 38.356 146 87 2 1 146 324 466 2.23e-25 100
MS.gene55545.t1 MTR_1g026190 37.162 148 87 3 1 146 376 519 2.28e-25 100
MS.gene55545.t1 MTR_4g115170 40.523 153 73 2 12 146 64 216 3.56e-25 96.3
MS.gene55545.t1 MTR_4g107490 37.838 148 87 4 1 146 367 511 4.09e-25 100
MS.gene55545.t1 MTR_1g055255 37.671 146 88 2 1 146 418 560 4.20e-25 100
MS.gene55545.t1 MTR_3g098070 36.986 146 89 2 1 146 323 465 6.07e-25 99.4
MS.gene55545.t1 MTR_5g009830 38.514 148 85 3 1 146 360 503 7.91e-25 99.4
MS.gene55545.t1 MTR_3g051770 37.662 154 89 2 1 148 377 529 1.72e-24 98.2
MS.gene55545.t1 MTR_3g098090 36.986 146 89 2 1 146 326 468 5.57e-24 96.7
MS.gene55545.t1 MTR_8g099095 37.162 148 87 3 1 146 360 503 1.72e-23 95.5
MS.gene55545.t1 MTR_5g099240 35.616 146 91 2 1 146 318 460 6.92e-23 93.6
MS.gene55545.t1 MTR_1g054865 35.616 146 91 2 1 146 455 597 7.51e-23 93.6
MS.gene55545.t1 MTR_5g099240 35.616 146 91 2 1 146 390 532 8.93e-23 93.6
MS.gene55545.t1 MTR_7g068710 35.616 146 93 1 1 146 350 494 9.53e-23 93.2
MS.gene55545.t1 MTR_1g041150 34.932 146 92 2 1 146 412 554 1.79e-22 92.8
MS.gene55545.t1 MTR_0028s0170 36.986 146 90 2 1 146 372 515 4.67e-22 91.3
MS.gene55545.t1 MTR_2g098890 41.429 140 78 2 11 146 63 202 8.34e-22 87.0
MS.gene55545.t1 MTR_4g086260 35.766 137 86 1 10 146 55 189 1.55e-21 86.3
MS.gene55545.t1 MTR_4g103650 35.714 140 80 3 12 147 2 135 1.70e-21 84.3
MS.gene55545.t1 MTR_5g089320 36.054 147 90 3 1 146 362 505 2.02e-21 89.7
MS.gene55545.t1 MTR_3g055510 38.194 144 36 2 1 144 41 131 2.45e-21 84.0
MS.gene55545.t1 MTR_3g089070 32.374 139 83 2 13 146 7 139 3.10e-21 84.0
MS.gene55545.t1 MTR_3g089090 32.374 139 83 2 13 146 6 138 3.26e-21 84.0
MS.gene55545.t1 MTR_5g027000 32.847 137 92 0 6 142 16 152 7.71e-21 83.6
MS.gene55545.t1 MTR_4g132040 35.374 147 90 4 1 146 390 532 8.57e-21 87.8
MS.gene55545.t1 MTR_4g066660 34.694 147 93 3 1 147 366 509 8.67e-21 87.8
MS.gene55545.t1 MTR_7g106710 37.671 146 83 3 1 146 429 566 1.01e-20 87.8
MS.gene55545.t1 MTR_3g055480 64.815 54 19 0 93 146 53 106 1.36e-20 81.6
MS.gene55545.t1 MTR_3g055480 42.667 75 36 1 1 75 41 108 3.32e-13 62.4
MS.gene55545.t1 MTR_4g103655 34.286 140 82 3 12 147 6 139 6.32e-20 80.5
MS.gene55545.t1 MTR_1g052530 31.081 148 101 1 1 148 346 492 7.16e-20 85.1
MS.gene55545.t1 MTR_4g103630 34.286 140 82 3 12 147 6 139 8.44e-20 80.1
MS.gene55545.t1 MTR_5g017550 36.029 136 86 1 12 147 48 182 1.64e-19 80.5
MS.gene55545.t1 MTR_7g091890 31.081 148 101 1 1 148 352 498 2.07e-19 84.0
MS.gene55545.t1 MTR_6g023460 28.571 140 99 1 8 147 4 142 3.95e-19 78.6
MS.gene55545.t1 MTR_5g008705 31.250 128 88 0 19 146 1 128 1.71e-18 76.6
MS.gene55545.t1 MTR_5g017510 35.000 140 83 3 12 147 48 183 1.27e-17 75.9
MS.gene55545.t1 MTR_5g017560 35.000 140 83 3 12 147 48 183 1.27e-17 75.9
MS.gene55545.t1 MTR_8g078270 32.593 135 89 2 13 146 54 187 1.84e-17 75.5
MS.gene55545.t1 MTR_7g074240 32.192 146 87 2 13 146 25 170 3.98e-16 71.6
MS.gene55545.t1 MTR_5g008695 33.036 112 73 1 36 145 1 112 6.22e-15 67.0
MS.gene55545.t1 MTR_3g083470 47.059 68 36 0 6 73 150 217 3.24e-14 67.4
MS.gene55545.t1 MTR_3g083470 32.847 137 82 1 11 147 92 218 1.01e-13 66.2
MS.gene55545.t1 MTR_5g022030 27.632 152 98 4 1 146 395 540 9.51e-14 67.8
MS.gene55545.t1 MTR_5g089440 36.364 99 60 2 49 146 80 176 5.79e-12 60.8
MS.gene55545.t1 MTR_4g082050 44.595 74 41 0 73 146 65 138 7.97e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55545.t1 AT3G43810 100.000 148 0 0 1 148 1 148 1.23e-106 303
MS.gene55545.t1 AT3G43810 45.455 77 41 1 73 149 1 76 4.73e-13 64.3
MS.gene55545.t1 AT3G43810 100.000 149 0 0 1 149 1 149 2.30e-106 300
MS.gene55545.t1 AT2G27030 99.329 149 1 0 1 149 1 149 3.89e-106 300
MS.gene55545.t1 AT2G27030 44.304 79 43 1 1 78 73 151 1.76e-13 64.7
MS.gene55545.t1 AT5G21274 99.329 149 1 0 1 149 1 149 7.29e-106 298
MS.gene55545.t1 AT3G56800 99.329 149 1 0 1 149 1 149 8.69e-106 298
MS.gene55545.t1 AT2G27030 99.329 149 1 0 1 149 1 149 8.69e-106 298
MS.gene55545.t1 AT2G41110 99.329 149 1 0 1 149 1 149 8.69e-106 298
MS.gene55545.t1 AT5G37780 97.315 149 4 0 1 149 1 149 2.36e-104 295
MS.gene55545.t1 AT1G66410 97.315 149 4 0 1 149 1 149 2.36e-104 295
MS.gene55545.t1 AT2G41110 91.925 161 1 1 1 149 1 161 7.00e-102 289
MS.gene55545.t1 AT1G66410 91.195 159 4 1 1 149 1 159 4.92e-101 286
MS.gene55545.t1 AT5G37780 88.415 164 4 1 1 149 1 164 4.49e-100 284
MS.gene55545.t1 AT5G37780 82.857 175 4 1 1 149 1 175 3.48e-98 280
MS.gene55545.t1 AT5G37780 97.581 124 3 0 26 149 13 136 6.82e-86 247
MS.gene55545.t1 AT5G37780 45.455 77 41 1 1 76 60 136 6.42e-14 64.7
MS.gene55545.t1 AT3G22930 76.389 144 34 0 4 147 27 170 5.02e-80 234
MS.gene55545.t1 AT4G14640 74.825 143 36 0 5 147 6 148 3.50e-79 231
MS.gene55545.t1 AT3G43810 100.000 113 0 0 37 149 1 113 1.19e-78 228
MS.gene55545.t1 AT3G43810 45.455 77 41 1 1 76 37 113 5.94e-14 64.3
MS.gene55545.t1 AT3G43810 100.000 113 0 0 37 149 1 113 1.19e-78 228
MS.gene55545.t1 AT3G43810 45.455 77 41 1 1 76 37 113 5.94e-14 64.3
MS.gene55545.t1 AT1G66410 97.345 113 3 0 37 149 1 113 3.29e-77 224
MS.gene55545.t1 AT1G66410 45.455 77 41 1 1 76 37 113 1.48e-14 65.9
MS.gene55545.t1 AT1G66410 97.345 113 3 0 37 149 1 113 3.29e-77 224
MS.gene55545.t1 AT1G66410 45.455 77 41 1 1 76 37 113 1.48e-14 65.9
MS.gene55545.t1 AT4G14640 72.951 122 33 0 26 147 9 130 1.22e-65 196
MS.gene55545.t1 AT4G14640 46.774 62 33 0 12 73 68 129 4.16e-13 62.8
MS.gene55545.t1 AT2G41090 64.430 149 50 1 1 149 1 146 5.52e-61 186
MS.gene55545.t1 AT2G41100 57.229 166 54 2 1 149 55 220 1.55e-54 173
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 148 238 5.84e-31 112
MS.gene55545.t1 AT2G41100 45.669 127 53 2 36 146 1 127 1.66e-29 108
MS.gene55545.t1 AT2G41100 57.229 166 54 2 1 149 55 220 1.55e-54 173
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 148 238 5.84e-31 112
MS.gene55545.t1 AT2G41100 45.669 127 53 2 36 146 1 127 1.66e-29 108
MS.gene55545.t1 AT2G41100 57.229 166 54 2 1 149 55 220 1.55e-54 173
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 148 238 5.84e-31 112
MS.gene55545.t1 AT2G41100 45.669 127 53 2 36 146 1 127 1.66e-29 108
MS.gene55545.t1 AT2G41100 57.229 166 54 2 1 149 90 255 4.07e-54 173
MS.gene55545.t1 AT2G41100 51.852 162 62 2 1 146 1 162 4.72e-50 163
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 183 273 1.18e-30 112
MS.gene55545.t1 AT2G41100 57.229 166 54 2 1 149 90 255 4.07e-54 173
MS.gene55545.t1 AT2G41100 51.852 162 62 2 1 146 1 162 4.72e-50 163
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 183 273 1.18e-30 112
MS.gene55545.t1 AT4G14640 73.786 103 27 0 5 107 6 108 6.86e-54 166
MS.gene55545.t1 AT3G22930 73.786 103 27 0 4 106 27 129 3.44e-52 162
MS.gene55545.t1 AT3G22930 46.774 62 33 0 85 146 35 96 3.36e-11 57.8
MS.gene55545.t1 AT1G12310 49.660 147 72 1 3 149 4 148 4.35e-47 150
MS.gene55545.t1 AT1G62820 48.980 147 73 1 3 149 4 148 8.65e-47 149
MS.gene55545.t1 AT3G51920 50.676 148 73 0 1 148 1 148 2.25e-46 148
MS.gene55545.t1 AT1G32250 42.763 152 81 1 1 146 5 156 9.36e-41 134
MS.gene55545.t1 AT3G50360 47.183 142 75 0 5 146 20 161 8.82e-40 132
MS.gene55545.t1 AT3G50360 45.714 70 38 0 80 149 22 91 4.38e-13 63.5
MS.gene55545.t1 AT4G37010 43.662 142 80 0 5 146 24 165 1.31e-35 121
MS.gene55545.t1 AT4G37010 43.662 142 80 0 5 146 20 161 1.69e-35 121
MS.gene55545.t1 AT2G41100 53.077 130 44 2 37 149 1 130 4.04e-35 121
MS.gene55545.t1 AT2G41100 62.766 94 32 1 4 97 58 148 4.33e-32 113
MS.gene55545.t1 AT2G41100 61.856 97 34 1 1 97 1 94 5.20e-35 119
MS.gene55545.t1 AT2G41100 50.649 77 37 1 73 149 1 76 1.48e-17 74.7
MS.gene55545.t1 AT1G18530 42.069 145 76 2 7 146 2 143 7.51e-34 116
MS.gene55545.t1 AT1G18530 42.647 68 39 0 12 79 82 149 1.52e-11 59.3
MS.gene55545.t1 AT1G24620 46.763 139 73 1 9 147 34 171 2.24e-33 116
MS.gene55545.t1 AT1G24620 49.254 67 34 0 7 73 105 171 1.80e-13 64.7
MS.gene55545.t1 AT3G25600 41.060 151 81 2 1 146 1 148 9.37e-33 114
MS.gene55545.t1 AT3G25600 41.176 68 40 0 12 79 87 154 2.12e-11 58.9
MS.gene55545.t1 AT3G03000 43.836 146 81 1 4 148 12 157 3.03e-32 112
MS.gene55545.t1 AT1G18210 42.222 135 74 1 12 146 23 153 4.12e-31 110
MS.gene55545.t1 AT1G18210 42.222 135 74 1 12 146 23 153 4.12e-31 110
MS.gene55545.t1 AT1G05990 44.604 139 74 2 11 146 4 142 4.27e-31 109
MS.gene55545.t1 AT1G66400 43.478 138 76 1 12 147 15 152 5.97e-31 109
MS.gene55545.t1 AT5G37770 42.446 139 76 1 12 146 17 155 8.24e-30 106
MS.gene55545.t1 AT5G37770 44.615 65 36 0 10 74 92 156 1.37e-13 64.7
MS.gene55545.t1 AT5G37770 42.446 139 76 1 12 146 17 155 8.24e-30 106
MS.gene55545.t1 AT5G37770 44.615 65 36 0 10 74 92 156 1.37e-13 64.7
MS.gene55545.t1 AT1G73630 40.146 137 78 1 12 148 20 152 1.98e-29 105
MS.gene55545.t1 AT4G03290 45.390 141 72 2 11 146 4 144 2.39e-29 105
MS.gene55545.t1 AT4G03290 46.875 64 32 1 14 75 83 146 1.91e-11 58.9
MS.gene55545.t1 AT2G43290 42.657 143 75 3 11 146 64 206 2.42e-29 106
MS.gene55545.t1 AT1G76040 41.096 146 84 2 1 146 167 310 4.62e-29 108
MS.gene55545.t1 AT1G76040 41.096 146 84 2 1 146 167 310 4.62e-29 108
MS.gene55545.t1 AT1G76040 41.096 146 84 2 1 146 405 548 6.18e-28 108
MS.gene55545.t1 AT3G59440 42.336 137 76 2 12 146 51 186 3.68e-27 100
MS.gene55545.t1 AT2G15680 37.324 142 87 1 5 146 43 182 1.24e-26 99.0
MS.gene55545.t1 AT5G23580 39.726 146 85 2 1 146 316 458 1.66e-26 103
MS.gene55545.t1 AT4G21940 39.597 149 86 3 1 148 395 540 6.57e-26 102
MS.gene55545.t1 AT4G21940 39.597 149 86 3 1 148 395 540 8.20e-26 102
MS.gene55545.t1 AT4G12860 40.580 138 80 1 11 146 4 141 2.98e-25 94.7
MS.gene55545.t1 AT4G23650 38.514 148 85 3 1 146 372 515 3.61e-25 100
MS.gene55545.t1 AT4G23650 43.478 69 36 1 82 147 377 445 4.98e-11 59.7
MS.gene55545.t1 AT1G35670 37.671 146 88 2 1 146 320 462 4.40e-25 99.8
MS.gene55545.t1 AT4G09570 38.514 148 84 3 1 146 319 461 6.44e-25 99.4
MS.gene55545.t1 AT3G07490 41.304 138 79 1 11 146 4 141 7.03e-25 93.6
MS.gene55545.t1 AT4G04720 38.255 149 88 3 1 148 373 518 1.37e-24 98.6
MS.gene55545.t1 AT4G04720 38.255 149 88 3 1 148 373 518 1.37e-24 98.6
MS.gene55545.t1 AT3G10660 36.301 146 90 2 1 146 480 622 2.04e-24 98.2
MS.gene55545.t1 AT3G10660 36.301 146 90 2 1 146 480 622 2.04e-24 98.2
MS.gene55545.t1 AT4G38230 36.986 146 89 2 1 146 174 316 2.19e-24 96.7
MS.gene55545.t1 AT5G19360 40.136 147 84 3 1 146 362 505 2.56e-24 97.8
MS.gene55545.t1 AT4G38230 36.986 146 89 2 1 146 318 460 6.18e-24 96.7
MS.gene55545.t1 AT4G38230 36.986 146 89 2 1 146 318 460 6.18e-24 96.7
MS.gene55545.t1 AT4G38230 36.986 146 89 2 1 146 348 490 6.31e-24 96.7
MS.gene55545.t1 AT1G61950 38.514 148 85 3 1 146 393 536 6.45e-24 96.7
MS.gene55545.t1 AT3G10190 40.146 137 79 3 12 146 70 205 6.84e-24 92.4
MS.gene55545.t1 AT5G12180 39.456 147 85 3 1 146 367 510 1.11e-23 95.9
MS.gene55545.t1 AT5G04870 35.616 146 91 2 1 146 444 586 2.15e-23 95.5
MS.gene55545.t1 AT1G74740 35.570 149 93 3 1 148 353 499 4.14e-23 94.4
MS.gene55545.t1 AT3G20410 36.301 146 91 2 1 146 385 528 9.87e-23 93.2
MS.gene55545.t1 AT3G20410 36.301 146 91 2 1 146 385 528 9.87e-23 93.2
MS.gene55545.t1 AT2G17290 35.616 146 91 2 1 146 379 521 1.51e-22 92.8
MS.gene55545.t1 AT2G17290 35.616 146 91 2 1 146 379 521 1.51e-22 92.8
MS.gene55545.t1 AT3G50770 36.429 140 84 2 12 146 64 203 2.04e-22 88.6
MS.gene55545.t1 AT3G50770 44.118 68 38 0 82 149 61 128 8.17e-13 63.5
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT4G04740 36.986 146 88 3 2 146 363 505 4.05e-22 91.7
MS.gene55545.t1 AT2G38910 34.932 146 92 2 1 146 428 570 4.44e-22 91.7
MS.gene55545.t1 AT4G04695 36.242 149 91 3 1 148 325 470 4.53e-22 91.3
MS.gene55545.t1 AT4G35310 34.932 146 92 2 1 146 391 533 4.74e-22 91.7
MS.gene55545.t1 AT4G35310 34.932 146 92 2 1 146 391 533 4.74e-22 91.7
MS.gene55545.t1 AT5G17470 37.500 136 82 2 15 148 5 139 5.73e-22 85.9
MS.gene55545.t1 AT5G17470 47.541 61 32 0 14 74 79 139 2.72e-12 60.8
MS.gene55545.t1 AT1G50700 34.932 146 93 2 1 146 367 510 8.27e-22 90.9
MS.gene55545.t1 AT4G04700 38.095 147 87 3 1 146 325 468 1.43e-21 90.1
MS.gene55545.t1 AT5G42380 36.232 138 87 1 10 146 47 184 2.09e-21 85.5
MS.gene55545.t1 AT1G18890 37.333 150 89 4 1 148 357 503 5.07e-21 88.6
MS.gene55545.t1 AT3G57530 35.374 147 91 3 1 146 357 500 1.15e-20 87.4
MS.gene55545.t1 AT5G12480 34.228 149 96 2 1 148 259 406 1.18e-20 87.0
MS.gene55545.t1 AT2G36180 41.176 136 76 3 15 147 3 137 1.35e-20 82.4
MS.gene55545.t1 AT5G12480 34.228 149 96 2 1 148 353 500 1.42e-20 87.4
MS.gene55545.t1 AT3G03400 37.600 125 76 1 17 139 10 134 2.23e-20 81.6
MS.gene55545.t1 AT3G03410 35.556 135 78 1 14 148 4 129 9.45e-20 79.7
MS.gene55545.t1 AT3G51850 32.877 146 97 1 1 146 348 492 1.00e-19 84.7
MS.gene55545.t1 AT2G41410 34.459 148 94 3 4 148 62 209 1.39e-19 81.6
MS.gene55545.t1 AT5G19450 32.215 149 99 2 1 148 351 498 7.44e-19 82.4
MS.gene55545.t1 AT5G19450 32.215 149 99 2 1 148 351 498 7.44e-19 82.4
MS.gene55545.t1 AT4G04710 34.694 147 92 3 1 146 312 455 9.92e-19 82.0
MS.gene55545.t1 AT4G04710 34.694 147 92 3 1 146 326 469 1.00e-18 82.0
MS.gene55545.t1 AT4G04710 34.694 147 92 3 1 146 339 482 1.05e-18 82.0
MS.gene55545.t1 AT2G41860 31.507 146 99 1 1 146 348 492 7.24e-18 79.3
MS.gene55545.t1 AT2G41860 31.507 146 99 1 1 146 348 492 7.82e-18 79.3
MS.gene55545.t1 AT4G04710 34.899 149 91 4 1 146 339 484 1.44e-17 78.6
MS.gene55545.t1 AT1G50700 30.233 172 92 3 1 146 367 536 2.14e-17 78.2
MS.gene55545.t1 AT2G31500 32.000 150 97 4 1 147 360 507 9.42e-17 76.3
MS.gene55545.t1 AT4G20780 33.775 151 78 3 17 146 34 183 1.39e-16 73.2
MS.gene55545.t1 AT4G04740 34.848 132 82 3 2 132 363 491 4.38e-16 74.3
MS.gene55545.t1 AT5G44460 33.566 143 83 2 16 146 32 174 3.61e-15 69.3
MS.gene55545.t1 AT1G76040 36.634 101 63 1 1 101 405 504 1.42e-14 70.1
MS.gene55545.t1 AT4G21940 37.374 99 61 1 1 99 395 492 2.23e-14 69.3
MS.gene55545.t1 AT1G76650 32.168 143 90 2 7 146 38 176 3.62e-14 66.6
MS.gene55545.t1 AT1G76650 32.168 143 90 2 7 146 38 176 3.62e-14 66.6
MS.gene55545.t1 AT5G66210 27.632 152 98 4 1 146 358 503 4.33e-14 68.6
MS.gene55545.t1 AT5G66210 27.632 152 98 4 1 146 358 503 4.33e-14 68.6
MS.gene55545.t1 AT2G17890 27.632 152 98 5 1 146 404 549 5.19e-14 68.6
MS.gene55545.t1 AT3G51850 33.962 106 69 1 1 106 348 452 5.26e-14 68.6
MS.gene55545.t1 AT1G76640 31.852 135 86 2 16 146 26 158 8.12e-14 65.1
MS.gene55545.t1 AT5G49480 28.758 153 101 3 1 146 7 158 5.52e-13 63.2
MS.gene55545.t1 AT1G21550 30.719 153 82 4 11 147 9 153 1.14e-12 62.0
MS.gene55545.t1 AT1G50700 35.354 99 63 1 1 99 367 464 1.55e-12 64.3
MS.gene55545.t1 AT1G76650 31.469 143 81 3 7 146 38 166 1.38e-11 59.3
MS.gene55545.t1 AT5G66210 26.718 131 90 3 1 125 358 488 2.60e-11 60.8
MS.gene55545.t1 AT4G36070 27.273 154 100 5 1 148 367 514 7.34e-11 59.3
MS.gene55545.t1 AT4G36070 27.273 154 100 5 1 148 367 514 7.55e-11 59.3

Find 42 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCTGAAAGAGGCGTTTC+GGG 0.325103 6.2:-17808402 MS.gene55545:CDS
CCCAACTGAGGCAGAGCTTC+AGG 0.327616 6.2:-17808525 MS.gene55545:CDS
GGAACTGTTATGCGTTCATT+GGG 0.343588 6.2:-17808554 MS.gene55545:CDS
TGGAACTGTTATGCGTTCAT+TGG 0.360083 6.2:-17808555 MS.gene55545:CDS
CGATCAGATCTCCGAGTTCA+AGG 0.386004 6.2:-17811367 MS.gene55545:CDS
AGGAGCTGAAAGAGGCGTTT+CGG 0.391958 6.2:-17808403 MS.gene55545:CDS
AGCTTTCAGCTTATTCGATA+AGG 0.414465 6.2:-17811343 MS.gene55545:CDS
TCCTGAAGCTCTGCCTCAGT+TGG 0.419465 6.2:+17808524 None:intergenic
CCTGAAGCTCTGCCTCAGTT+GGG 0.457983 6.2:+17808525 None:intergenic
AAACTATGAGGAATTCGTTA+AGG 0.465882 6.2:-17808243 MS.gene55545:CDS
ATCCGTGAGGCTGATGTTGA+TGG 0.484617 6.2:-17808278 MS.gene55545:CDS
TGCATCACAACCAAGGAGCT+TGG 0.485199 6.2:-17808575 MS.gene55545:CDS
CGCCTCTTTCAGCTCCTCCT+CGG 0.490822 6.2:+17808409 None:intergenic
CATAACAGTTCCAAGCTCCT+TGG 0.491995 6.2:+17808565 None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG 0.495316 6.2:-17808456 MS.gene55545:CDS
CATCGGTGAGCTTCTCGCCA+AGG 0.508143 6.2:+17808318 None:intergenic
TTTCAGCTCCTCCTCGGAGT+CGG 0.513859 6.2:+17808415 None:intergenic
CATCTCATCGACTTCTTCAT+CGG 0.523419 6.2:+17808301 None:intergenic
GCCATGAGGTTAAGAAACTC+AGG 0.525054 6.2:+17808455 None:intergenic
TGATGGTCAAATAAACTATG+AGG 0.543599 6.2:-17808255 MS.gene55545:CDS
CTCCGAGGAGGAGCTGAAAG+AGG 0.551298 6.2:-17808411 MS.gene55545:CDS
TTCAGCTTATTCGATAAGGA+TGG 0.559566 6.2:-17811339 MS.gene55545:CDS
GGTGAGCTTCTCGCCAAGGT+TGG 0.567744 6.2:+17808322 None:intergenic
CGTCATGTGATGACCAACCT+TGG 0.582821 6.2:-17808335 MS.gene55545:CDS
CCTTCATCTTCCTTGCCATG+AGG 0.583416 6.2:+17808441 None:intergenic
CCTCATGGCAAGGAAGATGA+AGG 0.591761 6.2:-17808441 MS.gene55545:CDS
ATCAATGAAGTAGATGCTGA+TGG 0.594359 6.2:-17808497 MS.gene55545:CDS
CACCATCAACATCAGCCTCA+CGG 0.595594 6.2:+17808276 None:intergenic
GCTGAAAGCTTCCTTGAACT+CGG 0.599384 6.2:+17811356 None:intergenic
GGAATTCGTTAAGGTCATGA+TGG 0.606742 6.2:-17808234 MS.gene55545:CDS
AGTTTCTTAACCTCATGGCA+AGG 0.615477 6.2:-17808451 MS.gene55545:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.620773 6.2:-17808272 MS.gene55545:CDS
GAAGTAGATGCTGATGGGAA+TGG 0.624358 6.2:-17808491 MS.gene55545:CDS
TTATTCGATAAGGATGGTGA+TGG 0.625242 6.2:-17811333 MS.gene55545:intron
CCATGAGGTTAAGAAACTCA+GGG 0.643314 6.2:+17808456 None:intergenic
TGCAGGTTGCATCACAACCA+AGG 0.653135 6.2:-17808582 MS.gene55545:intron
GAACTGTTATGCGTTCATTG+GGG 0.667564 6.2:-17808553 MS.gene55545:CDS
GATGAAGGACACCGACTCCG+AGG 0.669209 6.2:-17808426 MS.gene55545:CDS
TCAATGAAGTAGATGCTGAT+GGG 0.676011 6.2:-17808496 MS.gene55545:CDS
GAAGGACACCGACTCCGAGG+AGG 0.689648 6.2:-17808423 MS.gene55545:CDS
ATTGGGGCAAAACCCAACTG+AGG 0.728233 6.2:-17808537 MS.gene55545:CDS
AGTCGATGAGATGATCCGTG+AGG 0.760734 6.2:-17808291 MS.gene55545:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTGTTAATTTTTTTTT+TGG - chr6.2:17808414-17808433 MS.gene55545:CDS 10.0%
!! TTCAAATTCTACTATAATAT+AGG - chr6.2:17810317-17810336 MS.gene55545:intron 15.0%
!!! AACTTTTATTCATGATAATA+TGG + chr6.2:17810673-17810692 None:intergenic 15.0%
!!! ACTATCTTGTTATATTATTT+TGG - chr6.2:17809847-17809866 MS.gene55545:intron 15.0%
!!! CTATTTTCTTAAATTATTAC+CGG + chr6.2:17808815-17808834 None:intergenic 15.0%
!!! GTTGTTGATTATTATATATA+TGG - chr6.2:17811000-17811019 MS.gene55545:intron 15.0%
!! AAAAATCAATAACACTTTGA+AGG + chr6.2:17810058-17810077 None:intergenic 20.0%
!! AAAATCAATAACACTTTGAA+GGG + chr6.2:17810057-17810076 None:intergenic 20.0%
!! ACAACACTTTCTATTAAATA+GGG - chr6.2:17810271-17810290 MS.gene55545:intron 20.0%
!! ATCAAATAACCATTATATCA+AGG + chr6.2:17810014-17810033 None:intergenic 20.0%
!! ATCATTTAACCATTATATCA+AGG + chr6.2:17809435-17809454 None:intergenic 20.0%
!! GAAATTCAAATAATACAACA+CGG + chr6.2:17810422-17810441 None:intergenic 20.0%
!! TAGTTACTACTTTATAATGA+CGG - chr6.2:17809028-17809047 MS.gene55545:intron 20.0%
!! TATTTCATTCAATCAAATAC+AGG + chr6.2:17810478-17810497 None:intergenic 20.0%
!! TTTGTAAATAATAACCAACA+AGG - chr6.2:17809359-17809378 MS.gene55545:intron 20.0%
!!! AAAATTGCAATTTGTTTGTT+AGG - chr6.2:17808703-17808722 MS.gene55545:intron 20.0%
!!! CAATTTTGATTGAATGAAAA+AGG - chr6.2:17809910-17809929 MS.gene55545:intron 20.0%
!!! CTAAGTATATGTTTTTCAAA+TGG + chr6.2:17809886-17809905 None:intergenic 20.0%
!!! GTGAAAGTGTTTTTTAATTT+AGG - chr6.2:17808654-17808673 MS.gene55545:intron 20.0%
!!! GTTATATCTCAATTTTGTTT+TGG - chr6.2:17808765-17808784 MS.gene55545:intron 20.0%
!!! TTAGAAATTTTGTTAGGTTT+TGG - chr6.2:17808473-17808492 MS.gene55545:CDS 20.0%
!!! TTTGGATTAGAAATTTTGTT+AGG - chr6.2:17808467-17808486 MS.gene55545:CDS 20.0%
!!! TTTTCATTCAATCAAAATTG+TGG + chr6.2:17809910-17809929 None:intergenic 20.0%
! ACAAAATTGAGATATAACCT+TGG + chr6.2:17808763-17808782 None:intergenic 25.0%
! ATCATAATCTTTATCCTTGT+TGG + chr6.2:17809376-17809395 None:intergenic 25.0%
! ATTAGCGACATAACTAAAAT+GGG + chr6.2:17810834-17810853 None:intergenic 25.0%
! ATTAGTTAGATGATTATGGT+TGG + chr6.2:17810916-17810935 None:intergenic 25.0%
! GACAACACTTTCTATTAAAT+AGG - chr6.2:17810270-17810289 MS.gene55545:intron 25.0%
! GAGAATTAGTTAGATGATTA+TGG + chr6.2:17810920-17810939 None:intergenic 25.0%
! TAAAGATTATGATTCCAACA+AGG - chr6.2:17809383-17809402 MS.gene55545:intron 25.0%
! TAACTAATTCTCATCTAACT+AGG - chr6.2:17810928-17810947 MS.gene55545:intron 25.0%
! TAAGAAGTCATTTGCTTATA+GGG - chr6.2:17810951-17810970 MS.gene55545:intron 25.0%
! TATTAGCGACATAACTAAAA+TGG + chr6.2:17810835-17810854 None:intergenic 25.0%
! TATTCAGTATTGTCAATAGT+GGG - chr6.2:17810196-17810215 MS.gene55545:intron 25.0%
! TTATTCAGTATTGTCAATAG+TGG - chr6.2:17810195-17810214 MS.gene55545:intron 25.0%
!! AATCATAGATATTTTGCCTA+TGG - chr6.2:17810089-17810108 MS.gene55545:intron 25.0%
!! ATTCATGGATATTTTTCCTA+TGG - chr6.2:17809517-17809536 MS.gene55545:intron 25.0%
!! GTCAATAACACTTTGAAAAA+AGG + chr6.2:17809482-17809501 None:intergenic 25.0%
!!! AATTGTTTTACGTACTGTAT+AGG - chr6.2:17808930-17808949 MS.gene55545:intron 25.0%
!!! ATTGTTGTCATTTTAATACG+AGG - chr6.2:17808868-17808887 MS.gene55545:intron 25.0%
!!! TTTGTGATGCAATTTTGATT+AGG - chr6.2:17808391-17808410 MS.gene55545:CDS 25.0%
AAAACAAACTCACAAACCAT+AGG + chr6.2:17809536-17809555 None:intergenic 30.0%
AAACTATGAGGAATTCGTTA+AGG - chr6.2:17811370-17811389 MS.gene55545:CDS 30.0%
AAACTCTCACCTTGATATAA+TGG - chr6.2:17809423-17809442 MS.gene55545:intron 30.0%
AAATAGTGAATCACAGAACA+TGG - chr6.2:17809723-17809742 MS.gene55545:intron 30.0%
AAGAAGTCATTTGCTTATAG+GGG - chr6.2:17810952-17810971 MS.gene55545:intron 30.0%
ATATCCTGATAGGTAAATAC+CGG - chr6.2:17808793-17808812 MS.gene55545:intron 30.0%
CAACAAACATGTCTTTGATT+AGG + chr6.2:17809175-17809194 None:intergenic 30.0%
CATGAATCACATTCACAAAA+AGG + chr6.2:17809504-17809523 None:intergenic 30.0%
CTTATTCATTACTTCCTTGT+TGG + chr6.2:17809400-17809419 None:intergenic 30.0%
GATTCACTATTTAGTACAGA+GGG + chr6.2:17809715-17809734 None:intergenic 30.0%
GTAAGAAGTCATTTGCTTAT+AGG - chr6.2:17810950-17810969 MS.gene55545:intron 30.0%
GTACGTAAAACAATTCAGAT+CGG + chr6.2:17808925-17808944 None:intergenic 30.0%
TGATGGTCAAATAAACTATG+AGG - chr6.2:17811358-17811377 MS.gene55545:CDS 30.0%
TGATTCACTATTTAGTACAG+AGG + chr6.2:17809716-17809735 None:intergenic 30.0%
TGGTTCAGATACTTGAAAAA+TGG - chr6.2:17810773-17810792 MS.gene55545:intron 30.0%
TTGTGGCTTATAAACTAGTA+GGG - chr6.2:17809956-17809975 MS.gene55545:intron 30.0%
TTTGTGGCTTATAAACTAGT+AGG - chr6.2:17809955-17809974 MS.gene55545:intron 30.0%
! CTGAATTGTTGTTGTTAAAC+AGG - chr6.2:17809299-17809318 MS.gene55545:intron 30.0%
! CTTTTTGTGAATGTGATTCA+TGG - chr6.2:17809502-17809521 MS.gene55545:intron 30.0%
!! GATTGATTTGTGATGTGATT+TGG - chr6.2:17808449-17808468 MS.gene55545:CDS 30.0%
!!! TGACAGGTTTTGAAAGATAT+GGG - chr6.2:17810157-17810176 MS.gene55545:intron 30.0%
!!! TGTATGAGTTTTGAGAAACA+TGG - chr6.2:17810130-17810149 MS.gene55545:intron 30.0%
AACGTTATAACACAATAGCG+TGG + chr6.2:17809683-17809702 None:intergenic 35.0%
AACTCAGTGTTGTCAAATAG+CGG + chr6.2:17809780-17809799 None:intergenic 35.0%
ACTAACACAACACTGACAAA+TGG + chr6.2:17809122-17809141 None:intergenic 35.0%
AGCTTTCAGCTTATTCGATA+AGG - chr6.2:17808270-17808289 MS.gene55545:CDS 35.0%
ATCAATGAAGTAGATGCTGA+TGG - chr6.2:17811116-17811135 MS.gene55545:intron 35.0%
ATTACCGGTATTTACCTATC+AGG + chr6.2:17808800-17808819 None:intergenic 35.0%
CAAATGGTTGCATTCACAAA+TGG + chr6.2:17809106-17809125 None:intergenic 35.0%
GAAAAAGGTTGAACACATGT+TGG - chr6.2:17809925-17809944 MS.gene55545:intron 35.0%
TATATATGGTGTGAACTTGC+AGG - chr6.2:17811014-17811033 MS.gene55545:intron 35.0%
TCAATGAAGTAGATGCTGAT+GGG - chr6.2:17811117-17811136 MS.gene55545:intron 35.0%
TTATTCGATAAGGATGGTGA+TGG - chr6.2:17808280-17808299 MS.gene55545:CDS 35.0%
TTCAAGCTACGATAATTCTG+AGG - chr6.2:17808982-17809001 MS.gene55545:intron 35.0%
TTCAGCTTATTCGATAAGGA+TGG - chr6.2:17808274-17808293 MS.gene55545:CDS 35.0%
TTGTCAGTGTTGTGTTAGTA+CGG - chr6.2:17809123-17809142 MS.gene55545:intron 35.0%
TTTGAAAAAAGGTTGCTTGC+AGG + chr6.2:17809471-17809490 None:intergenic 35.0%
! GTTTTACGTACTGTATAGGT+TGG - chr6.2:17808934-17808953 MS.gene55545:intron 35.0%
! GTTTTTGACAAGGATCAGAA+TGG - chr6.2:17811233-17811252 MS.gene55545:intron 35.0%
! TCGTTCAAGTTATAGTTCCA+AGG - chr6.2:17808743-17808762 MS.gene55545:intron 35.0%
!! ACATGTTGGCTACATTTTTG+TGG - chr6.2:17809939-17809958 MS.gene55545:intron 35.0%
!! ATTATGGTTGGTTTACATCC+TGG + chr6.2:17810904-17810923 None:intergenic 35.0%
!! TGGTAGGTATTGAAAGATAC+TGG - chr6.2:17809587-17809606 MS.gene55545:intron 35.0%
!! TTTGGTAGTGATATCCTGAT+AGG - chr6.2:17808783-17808802 MS.gene55545:intron 35.0%
!! TTTTGAGAAACATGGCTTGA+TGG - chr6.2:17809567-17809586 MS.gene55545:intron 35.0%
!!! GTCTTGAGTTTTGAGAAACA+TGG - chr6.2:17809559-17809578 MS.gene55545:intron 35.0%
!!! GTGACAGGTTTTGAAAGATA+TGG - chr6.2:17810156-17810175 MS.gene55545:intron 35.0%
!!! GTTGGAACACTCTTTTTTGT+AGG - chr6.2:17808952-17808971 MS.gene55545:intron 35.0%
ACGTGGCTTATATACGAGAA+GGG - chr6.2:17810607-17810626 MS.gene55545:intron 40.0%
AGCTTGATCTCATAACCTCA+AGG - chr6.2:17810746-17810765 MS.gene55545:intron 40.0%
AGTTGAATACACACTGACAC+TGG - chr6.2:17810497-17810516 MS.gene55545:intron 40.0%
AGTTTCTTAACCTCATGGCA+AGG - chr6.2:17811162-17811181 MS.gene55545:intron 40.0%
ATGTCGCTAATACACTAGCA+GGG - chr6.2:17810843-17810862 MS.gene55545:intron 40.0%
CACATTTGTCGATGTCATGT+CGG + chr6.2:17809199-17809218 None:intergenic 40.0%
CATGTCTTTGATTAGGTGTC+TGG + chr6.2:17809168-17809187 None:intergenic 40.0%
CCATAATCATCTTACTAGCC+AGG - chr6.2:17810883-17810902 MS.gene55545:intron 40.0%
CCATGAGGTTAAGAAACTCA+GGG + chr6.2:17811160-17811179 None:intergenic 40.0%
CCTGGCTAGTAAGATGATTA+TGG + chr6.2:17810886-17810905 None:intergenic 40.0%
CGTAAAACAATTCAGATCGG+AGG + chr6.2:17808922-17808941 None:intergenic 40.0%
CTTGATCTCATAACCTCAAG+GGG - chr6.2:17810748-17810767 MS.gene55545:intron 40.0%
GAACTGTTATGCGTTCATTG+GGG - chr6.2:17811060-17811079 MS.gene55545:intron 40.0%
GCTTGATCTCATAACCTCAA+GGG - chr6.2:17810747-17810766 MS.gene55545:intron 40.0%
GGAACTGTTATGCGTTCATT+GGG - chr6.2:17811059-17811078 MS.gene55545:intron 40.0%
GGAATTCGTTAAGGTCATGA+TGG - chr6.2:17811379-17811398 MS.gene55545:CDS 40.0%
TACGTGGCTTATATACGAGA+AGG - chr6.2:17810606-17810625 MS.gene55545:intron 40.0%
TAGTAGGGTGAGACAAGTAA+AGG - chr6.2:17809971-17809990 MS.gene55545:intron 40.0%
TATGTCGCTAATACACTAGC+AGG - chr6.2:17810842-17810861 MS.gene55545:intron 40.0%
TCTCCAGCACTTACTAACAT+GGG + chr6.2:17810545-17810564 None:intergenic 40.0%
TGGAACTGTTATGCGTTCAT+TGG - chr6.2:17811058-17811077 MS.gene55545:intron 40.0%
TTATTCAGTGTCGTCAATCG+CGG - chr6.2:17809625-17809644 MS.gene55545:intron 40.0%
!! CATCTCATCGACTTCTTCAT+CGG + chr6.2:17811315-17811334 None:intergenic 40.0%
ACGTAACAATGCCAACAGCA+AGG + chr6.2:17810591-17810610 None:intergenic 45.0%
AGAAGGGTGAGAGATGTAAG+TGG - chr6.2:17810623-17810642 MS.gene55545:intron 45.0%
CATAACAGTTCCAAGCTCCT+TGG + chr6.2:17811051-17811070 None:intergenic 45.0%
CCCTGAGTTTCTTAACCTCA+TGG - chr6.2:17811157-17811176 MS.gene55545:intron 45.0%
CGTAACAATGCCAACAGCAA+GGG + chr6.2:17810590-17810609 None:intergenic 45.0%
CTCTCCAGCACTTACTAACA+TGG + chr6.2:17810546-17810565 None:intergenic 45.0%
GAAGTAGATGCTGATGGGAA+TGG - chr6.2:17811122-17811141 MS.gene55545:intron 45.0%
GCCATGAGGTTAAGAAACTC+AGG + chr6.2:17811161-17811180 None:intergenic 45.0%
GCTGAAAGCTTCCTTGAACT+CGG + chr6.2:17808260-17808279 None:intergenic 45.0%
TAAACGCACTCACAAGCCAT+AGG + chr6.2:17810108-17810127 None:intergenic 45.0%
TCACACTGTAGTCTGTAGCA+TGG + chr6.2:17810236-17810255 None:intergenic 45.0%
TCGCGGATCACATCAAATAG+CGG - chr6.2:17809642-17809661 MS.gene55545:intron 45.0%
TGAGAAACATGGCATGTGAC+AGG - chr6.2:17810141-17810160 MS.gene55545:intron 45.0%
TTCGTAGCTGGACATGACTT+TGG - chr6.2:17809275-17809294 MS.gene55545:intron 45.0%
! CTTACTAACATGGGTGCTGT+TGG + chr6.2:17810536-17810555 None:intergenic 45.0%
! GAGAAACATGGCTTGATGGT+AGG - chr6.2:17809571-17809590 MS.gene55545:intron 45.0%
! TTGCTGTTGGCATTGTTACG+TGG - chr6.2:17810590-17810609 MS.gene55545:intron 45.0%
!! CATGTTAGTAAGTGCTGGAG+AGG - chr6.2:17810544-17810563 MS.gene55545:intron 45.0%
!! GTATGTGTGACTAGTCTGTG+TGG - chr6.2:17810707-17810726 MS.gene55545:intron 45.0%
AGGGTGAGAGATGTAAGTGG+TGG - chr6.2:17810626-17810645 MS.gene55545:intron 50.0%
AGTCGATGAGATGATCCGTG+AGG - chr6.2:17811322-17811341 MS.gene55545:intron 50.0%
ATCCGTGAGGCTGATGTTGA+TGG - chr6.2:17811335-17811354 MS.gene55545:CDS 50.0%
ATGTGTCAGTGCTTCGTAGC+TGG - chr6.2:17809263-17809282 MS.gene55545:intron 50.0%
ATTGGGGCAAAACCCAACTG+AGG - chr6.2:17811076-17811095 MS.gene55545:intron 50.0%
CACCATCAACATCAGCCTCA+CGG + chr6.2:17811340-17811359 None:intergenic 50.0%
CACTGTAGTCTGTAGCATGG+TGG + chr6.2:17810233-17810252 None:intergenic 50.0%
CATTCTCACGTGTCAGACAC+TGG - chr6.2:17808891-17808910 MS.gene55545:intron 50.0%
CCTCATGGCAAGGAAGATGA+AGG - chr6.2:17811172-17811191 MS.gene55545:intron 50.0%
CCTTCATCTTCCTTGCCATG+AGG + chr6.2:17811175-17811194 None:intergenic 50.0%
CGATCAGATCTCCGAGTTCA+AGG - chr6.2:17808246-17808265 MS.gene55545:CDS 50.0%
CGTCATGTGATGACCAACCT+TGG - chr6.2:17811278-17811297 MS.gene55545:intron 50.0%
GCACCCATGTTAGTAAGTGC+TGG - chr6.2:17810539-17810558 MS.gene55545:intron 50.0%
GGTGTCTGGTGTCTAACACA+TGG + chr6.2:17809154-17809173 None:intergenic 50.0%
TATCTGAACCATGCCCCTTG+AGG + chr6.2:17810764-17810783 None:intergenic 50.0%
TCTCATAACCTCAAGGGGCA+TGG - chr6.2:17810753-17810772 MS.gene55545:intron 50.0%
TGCAGGTTGCATCACAACCA+AGG - chr6.2:17811031-17811050 MS.gene55545:intron 50.0%
TGCATCACAACCAAGGAGCT+TGG - chr6.2:17811038-17811057 MS.gene55545:intron 50.0%
TGCTGGAGAGGAGTAACACT+TGG - chr6.2:17810556-17810575 MS.gene55545:intron 50.0%
! GAGAGATGTAAGTGGTGGAG+AGG - chr6.2:17810631-17810650 MS.gene55545:intron 50.0%
!! AGGAGCTGAAAGAGGCGTTT+CGG - chr6.2:17811210-17811229 MS.gene55545:intron 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr6.2:17811341-17811360 MS.gene55545:CDS 50.0%
!!! GGCGTTTCGGGTTTTTGACA+AGG - chr6.2:17811223-17811242 MS.gene55545:intron 50.0%
ATAGCGGCGCTACATCGTAG+TGG + chr6.2:17809764-17809783 None:intergenic 55.0%
CCTGAAGCTCTGCCTCAGTT+GGG + chr6.2:17811091-17811110 None:intergenic 55.0%
TCCTGAAGCTCTGCCTCAGT+TGG + chr6.2:17811092-17811111 None:intergenic 55.0%
TTTCAGCTCCTCCTCGGAGT+CGG + chr6.2:17811201-17811220 None:intergenic 55.0%
! GGATGCGTTACCCTTGCTGT+TGG - chr6.2:17810577-17810596 MS.gene55545:intron 55.0%
!! GGAGCTGAAAGAGGCGTTTC+GGG - chr6.2:17811211-17811230 MS.gene55545:intron 55.0%
CATCGGTGAGCTTCTCGCCA+AGG + chr6.2:17811298-17811317 None:intergenic 60.0%
CCCAACTGAGGCAGAGCTTC+AGG - chr6.2:17811088-17811107 MS.gene55545:intron 60.0%
CGCCTCTTTCAGCTCCTCCT+CGG + chr6.2:17811207-17811226 None:intergenic 60.0%
CTCCGAGGAGGAGCTGAAAG+AGG - chr6.2:17811202-17811221 MS.gene55545:intron 60.0%
GGTGAGCTTCTCGCCAAGGT+TGG + chr6.2:17811294-17811313 None:intergenic 60.0%
!! GATGAAGGACACCGACTCCG+AGG - chr6.2:17811187-17811206 MS.gene55545:intron 60.0%
!! GAAGGACACCGACTCCGAGG+AGG - chr6.2:17811190-17811209 MS.gene55545:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 17808226 17811409 17808226 ID=MS.gene55545
chr6.2 mRNA 17808226 17811409 17808226 ID=MS.gene55545.t1;Parent=MS.gene55545
chr6.2 exon 17811334 17811409 17811334 ID=MS.gene55545.t1.exon1;Parent=MS.gene55545.t1
chr6.2 CDS 17811334 17811409 17811334 ID=cds.MS.gene55545.t1;Parent=MS.gene55545.t1
chr6.2 exon 17808226 17808599 17808226 ID=MS.gene55545.t1.exon2;Parent=MS.gene55545.t1
chr6.2 CDS 17808226 17808599 17808226 ID=cds.MS.gene55545.t1;Parent=MS.gene55545.t1
Gene Sequence

>MS.gene55545

ATGGCAGATCAACTCACTGACGATCAGATCTCCGAGTTCAAGGAAGCTTTCAGCTTATTCGATAAGGATGGTGATGGTAAGAATCTCTCTCGTTCGTTCTCGTTTTTTGTTTTGATTTTTTTTTTCTGTATATTGTTTTTTTTGTTGTGATTTTGTTATTATTTCTTTGTGATGCAATTTTGATTAGGACTTTTGTTAATTTTTTTTTTGGTGATTTTGTTTTGATTGATTTGTGATGTGATTTGGATTAGAAATTTTGTTAGGTTTTGGTTTGATTTTGTTAATTTGTTTTGAATTTCATGTAGTTTATTTTATTTTATATATTTATTATTATTTTTTATATGATTATTGTTATGTTAATTTATCGTGATTTTACTGATTTAGATGAACATATGTTTTCAAAAAATTGAAAAATTAAATCAGAAAATGTGAAAGTGTTTTTTAATTTAGGAAAAAACAAAACGTAGAAAACTAAAGAAAATTGCAATTTGTTTGTTAGGAAAATTTTGAAGCGTATTCGTTCAAGTTATAGTTCCAAGGTTATATCTCAATTTTGTTTTGGTAGTGATATCCTGATAGGTAAATACCGGTAATAATTTAAGAAAATAGAAGTGATTGAACTTGCATGTAACTATAGTTGTTATTGTTGTCATTTTAATACGAGGCATTCTCACGTGTCAGACACTGGACACGCCTCCGATCTGAATTGTTTTACGTACTGTATAGGTTGGAACACTCTTTTTTGTAGGATATTTATTCAAGCTACGATAATTCTGAGGCTATATCTCGATTTTTTTTAATATAGTTACTACTTTATAATGACGGTGATATGTTAATACTCTTAATAATTTAAGAAAATAGAAGTGATTGAATGCAACCATTTGTGAATGCAACCATTTGTCAGTGTTGTGTTAGTACGGACACTCCATGTGTTAGACACCAGACACCTAATCAAAGACATGTTTGTTGTCCGACATGACATCGACAAATGTGATTACATTCAAATAATTCGTTTTCTCAAATTATTGCTAGTGTCGATGTGTCAGTGCTTCGTAGCTGGACATGACTTTGGTCTGAATTGTTGTTGTTAAACAGGTTCAAATACTTTCTGTTTGTTTGTTTTGCTGCATTTTTTTGTAAATAATAACCAACAAGGATAAAGATTATGATTCCAACAAGGAAGTAATGAATAAGATAAAACTCTCACCTTGATATAATGGTTAAATGATATGTTCTGCTACACCTGCAAGCAACCTTTTTTCAAAGTGTTATTGACCTTTTTGTGAATGTGATTCATGGATATTTTTCCTATGGTTTGTGAGTTTGTTTTTGTGTCTTGAGTTTTGAGAAACATGGCTTGATGGTAGGTATTGAAAGATACTGGTTTTAACGAAGTAGTTTATTCAGTGTCGTCAATCGCGGATCACATCAAATAGCGGTTTGTTCAAATTCAACCACGCTATTGTGTTATAACGTTTTTTTACAGCCCTCTGTACTAAATAGTGAATCACAGAACATGGTGATTTGCTTAAATTCCACTACGATGTAGCGCCGCTATTTGACAACACTGAGTTTATTCATTGTAGATTTTTTTCTTTGTTTAGAGTCAAAACTTTCTATCACTATCTTGTTATATTATTTTGGAAGTTTTGTTTTTCCATTTGAAAAACATATACTTAGACCACAATTTTGATTGAATGAAAAAGGTTGAACACATGTTGGCTACATTTTTGTGGCTTATAAACTAGTAGGGTGAGACAAGTAAAGGCTATGATAAAACTCTCACCTTGATATAATGGTTATTTGATATGTTCAGTCACATCTGCATCCCTTCAAAGTGTTATTGATTTTTTTGTGAATATTAATCATAGATATTTTGCCTATGGCTTGTGAGTGCGTTTACGTGTATGAGTTTTGAGAAACATGGCATGTGACAGGTTTTGAAAGATATGGGTTTTCATGATGTAGCTTATTCAGTATTGTCAATAGTGGGTTGTTTGAATTCCACCATGCTACAGACTACAGTGTGAATTTGCTTCTATATGACAACACTTTCTATTAAATAGGGAATCACAAAACAATAGTGATTAATTCAAATTCTACTATAATATAGGCATAGTGCTGCTATTTGACTCACTGATTTTATTGTGACGTTTTTTGTTGTTCATTTAGAGTCAGAACTTTCTATTATTGCCGTGTTGTATTATTTGAATTTCTGTCTTTTGAAAAAACACAAACAAAAATGCAGACCTGTATTTGATTGAATGAAATAGTTGAATACACACTGACACTGGCTATATAACAATGCCAACAGCACCCATGTTAGTAAGTGCTGGAGAGGAGTAACACTTGGATGCGTTACCCTTGCTGTTGGCATTGTTACGTGGCTTATATACGAGAAGGGTGAGAGATGTAAGTGGTGGAGAGGAATTGAATCAAACTAACCATATTATCATGAATAAAAGTTTGACTACACATTGAGTATGTGTGACTAGTCTGTGTGGTGTCATATCAATCACTAGCTTGATCTCATAACCTCAAGGGGCATGGTTCAGATACTTGAAAAATGGTCGTTAGTTAGCGTCATTTTATTTCACGATGATTTCCCATTTTAGTTATGTCGCTAATACACTAGCAGGGTGTGTAATTGTAACTAACCATAATCATCTTACTAGCCAGGATGTAAACCAACCATAATCATCTAACTAATTCTCATCTAACTAGGTAAGAAGTCATTTGCTTATAGGGGAATGAATTGATGATGCTATAAATTTGTTGTTGATTATTATATATATGGTGTGAACTTGCAGGTTGCATCACAACCAAGGAGCTTGGAACTGTTATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACCGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAATGGTTTCATTTCTGCTGCTGAGCTTCGTCATGTGATGACCAACCTTGGCGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTATGAGGAATTCGTTAAGGTCATGATGGCTAAATGA

Protein sequence

>MS.gene55545.t1

MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK