AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007392

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007392.t1 MTR_7g102260 98.294 293 5 0 1 293 1 293 0.0 603
MS.gene007392.t1 MTR_1g063020 83.505 291 48 0 3 293 6 296 0.0 525
MS.gene007392.t1 MTR_4g057450 70.790 291 85 0 1 291 14 304 6.38e-158 442
MS.gene007392.t1 MTR_2g095800 66.897 290 94 2 3 291 21 309 4.42e-143 405
MS.gene007392.t1 MTR_1g033420 40.878 296 158 7 5 291 4 291 1.66e-66 211
MS.gene007392.t1 MTR_8g064180 38.158 304 167 6 3 291 13 310 5.18e-66 209
MS.gene007392.t1 MTR_7g093530 40.000 265 142 6 36 291 23 279 2.64e-60 193
MS.gene007392.t1 MTR_3g084630 41.667 264 137 6 34 291 25 277 3.10e-60 193
MS.gene007392.t1 MTR_1g105900 39.326 267 143 8 36 291 33 291 3.15e-60 194
MS.gene007392.t1 MTR_3g084620 41.667 264 137 6 34 291 25 277 3.49e-60 193
MS.gene007392.t1 MTR_5g029100 40.891 247 133 3 55 291 62 305 5.15e-60 195
MS.gene007392.t1 MTR_4g128570 39.925 268 136 7 30 291 24 272 7.13e-60 192
MS.gene007392.t1 MTR_8g081040 40.458 262 140 6 36 291 30 281 1.23e-59 192
MS.gene007392.t1 MTR_4g128410 39.623 265 143 7 36 291 24 280 4.59e-59 190
MS.gene007392.t1 MTR_4g128580 39.568 278 147 6 27 291 16 285 3.50e-58 188
MS.gene007392.t1 MTR_3g089540 40.840 262 141 5 36 291 29 282 8.46e-58 187
MS.gene007392.t1 MTR_4g128400 39.623 265 143 6 36 291 27 283 1.01e-57 187
MS.gene007392.t1 MTR_4g126920 39.474 266 143 6 36 291 24 281 1.02e-57 187
MS.gene007392.t1 MTR_7g084770 37.410 278 146 7 21 291 31 287 1.28e-57 187
MS.gene007392.t1 MTR_6g088320 38.951 267 144 7 36 291 25 283 1.74e-57 186
MS.gene007392.t1 MTR_7g084760 37.410 278 146 7 21 291 31 287 2.34e-57 186
MS.gene007392.t1 MTR_2g038860 38.697 261 139 5 36 283 25 277 7.94e-57 185
MS.gene007392.t1 MTR_2g038705 38.697 261 139 5 36 283 25 277 7.94e-57 185
MS.gene007392.t1 MTR_5g091730 39.695 262 142 7 36 291 27 278 8.52e-57 184
MS.gene007392.t1 MTR_5g029100 40.678 236 127 3 66 291 42 274 1.27e-56 185
MS.gene007392.t1 MTR_7g084750 37.121 264 149 7 37 291 32 287 8.42e-56 182
MS.gene007392.t1 MTR_8g102220 37.828 267 127 7 36 291 28 266 1.52e-55 181
MS.gene007392.t1 MTR_2g089140 35.816 282 153 6 25 291 18 286 3.12e-55 181
MS.gene007392.t1 MTR_8g090100 39.630 270 139 8 37 291 21 281 3.44e-55 181
MS.gene007392.t1 MTR_4g045853 37.037 270 142 6 29 283 24 280 6.27e-55 180
MS.gene007392.t1 MTR_6g033085 34.667 300 168 9 1 291 7 287 9.99e-55 179
MS.gene007392.t1 MTR_8g102910 36.093 302 157 8 1 291 3 279 1.47e-54 179
MS.gene007392.t1 MTR_6g033055 39.076 238 130 6 61 291 58 287 2.00e-53 176
MS.gene007392.t1 MTR_1g105495 36.900 271 144 8 37 291 35 294 4.20e-53 175
MS.gene007392.t1 MTR_7g056090 38.889 270 144 9 30 291 25 281 1.84e-51 171
MS.gene007392.t1 MTR_4g097640 37.079 267 145 8 37 291 32 287 3.95e-50 167
MS.gene007392.t1 MTR_4g097670 37.079 267 145 8 37 291 32 287 3.95e-50 167
MS.gene007392.t1 MTR_4g097700 37.079 267 145 8 37 291 69 324 5.83e-50 168
MS.gene007392.t1 MTR_8g013055 37.743 257 140 6 37 283 31 277 2.58e-49 165
MS.gene007392.t1 MTR_4g128590 35.145 276 141 8 30 291 24 275 2.54e-48 162
MS.gene007392.t1 MTR_2g089140 37.118 229 121 5 78 291 3 223 2.96e-48 160
MS.gene007392.t1 MTR_2g049030 33.585 265 148 11 37 291 30 276 1.00e-39 140
MS.gene007392.t1 MTR_2g049130 32.453 265 157 10 37 293 29 279 1.10e-39 140
MS.gene007392.t1 MTR_8g032640 33.702 181 103 6 55 231 31 198 1.06e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007392.t1 AT2G36870 81.724 290 53 0 3 292 9 298 0.0 506
MS.gene007392.t1 AT3G44990 64.261 291 104 0 1 291 3 293 1.84e-138 392
MS.gene007392.t1 AT2G36870 84.118 170 27 0 3 172 9 178 1.11e-104 303
MS.gene007392.t1 AT4G14130 41.137 299 140 8 5 291 10 284 5.27e-69 216
MS.gene007392.t1 AT1G10550 35.179 307 176 6 2 291 9 309 3.00e-65 207
MS.gene007392.t1 AT1G32170 39.933 298 152 7 6 291 11 293 1.36e-64 206
MS.gene007392.t1 AT5G57550 38.328 287 155 6 2 283 4 273 2.70e-64 204
MS.gene007392.t1 AT1G14720 39.405 269 152 4 31 291 25 290 3.43e-63 202
MS.gene007392.t1 AT3G23730 40.590 271 140 7 34 291 24 286 1.28e-62 199
MS.gene007392.t1 AT5G57560 40.942 276 131 9 34 291 20 281 6.82e-61 195
MS.gene007392.t1 AT2G01850 39.015 264 150 4 36 291 30 290 9.21e-60 194
MS.gene007392.t1 AT5G57530 41.509 265 136 8 37 291 27 282 1.49e-59 191
MS.gene007392.t1 AT4G25810 41.697 271 135 9 34 291 23 283 4.86e-59 190
MS.gene007392.t1 AT5G65730 38.519 270 145 7 33 291 31 290 5.38e-58 188
MS.gene007392.t1 AT4G25820 42.857 266 133 9 36 291 29 285 1.61e-57 186
MS.gene007392.t1 AT5G48070 39.925 268 135 8 36 291 28 281 2.15e-57 186
MS.gene007392.t1 AT4G18990 40.000 260 130 5 53 291 58 312 5.80e-57 187
MS.gene007392.t1 AT5G57540 41.132 265 137 9 37 291 26 281 1.02e-56 184
MS.gene007392.t1 AT4G30290 40.264 303 142 9 1 291 1 276 1.21e-56 184
MS.gene007392.t1 AT4G30270 41.107 253 124 8 45 291 32 265 2.41e-56 183
MS.gene007392.t1 AT1G11545 38.267 277 140 8 34 291 35 299 6.05e-56 183
MS.gene007392.t1 AT4G13090 38.047 297 156 7 5 291 10 288 1.20e-55 182
MS.gene007392.t1 AT2G18800 37.500 280 141 9 36 291 27 296 2.11e-55 181
MS.gene007392.t1 AT1G65310 45.259 232 110 8 66 291 61 281 3.90e-55 180
MS.gene007392.t1 AT4G30280 44.255 235 108 7 66 291 61 281 4.40e-55 180
MS.gene007392.t1 AT1G65310 45.259 232 110 8 66 291 83 303 5.81e-55 180
MS.gene007392.t1 AT3G25050 35.075 268 158 6 33 292 31 290 2.00e-54 179
MS.gene007392.t1 AT2G06850 38.545 275 148 8 28 291 26 290 2.75e-54 178
MS.gene007392.t1 AT2G14620 36.131 274 156 8 29 291 29 294 8.46e-54 177
MS.gene007392.t1 AT5G13870 39.496 238 129 6 61 291 58 287 9.08e-54 177
MS.gene007392.t1 AT5G13870 39.496 238 129 6 61 291 58 287 9.08e-54 177
MS.gene007392.t1 AT5G13870 39.496 238 129 6 61 291 58 287 9.08e-54 177
MS.gene007392.t1 AT4G13080 38.023 263 145 7 37 291 39 291 1.38e-52 174
MS.gene007392.t1 AT4G37800 38.060 268 149 6 33 291 30 289 1.63e-52 174
MS.gene007392.t1 AT4G03210 35.878 262 139 5 37 283 29 276 5.06e-52 172
MS.gene007392.t1 AT2G06850 41.102 236 120 7 65 291 5 230 1.01e-51 170
MS.gene007392.t1 AT4G03210 37.109 256 129 6 51 291 18 256 2.12e-50 167
MS.gene007392.t1 AT2G14620 36.179 246 140 7 55 291 7 244 3.81e-49 164
MS.gene007392.t1 AT4G28850 34.926 272 157 8 32 291 24 287 6.12e-49 164
MS.gene007392.t1 AT2G14620 37.168 226 125 7 75 291 16 233 5.42e-46 155
MS.gene007392.t1 AT4G18990 40.092 217 104 5 96 291 27 238 8.50e-44 151
MS.gene007392.t1 AT3G48580 34.766 256 134 10 45 291 42 273 1.42e-38 137
MS.gene007392.t1 AT3G48580 33.906 233 126 8 65 291 4 214 1.58e-35 127
MS.gene007392.t1 AT3G48580 30.859 256 124 11 45 291 42 253 9.75e-24 97.8

Find 77 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAATGCATTAACTATT+TGG 0.118568 7.4:-8576357 MS.gene007392:CDS
CCGTTTCGATCTGGCTATTT+TGG 0.134142 7.4:-8576196 MS.gene007392:CDS
ATTAGACCAATGTGGCTTTA+TGG 0.169563 7.4:-8574644 MS.gene007392:CDS
GATTAAACTCACAACAAAAT+AGG 0.178606 7.4:-8574454 MS.gene007392:CDS
TAAAGCCACATTGGTCTAAT+TGG 0.229363 7.4:+8574647 None:intergenic
GTGACTTACATTATCTCTTT+AGG 0.271288 7.4:+8575693 None:intergenic
TGTGGCTTTATGGTTCAATA+TGG 0.272583 7.4:-8574634 MS.gene007392:CDS
TTCCTCGGGTACCTCCTTAT+TGG 0.277629 7.4:+8574686 None:intergenic
TTTATTTAACCCCAACATTC+AGG 0.280498 7.4:+8574356 None:intergenic
GAGAAATGAAGTTTCATCTT+TGG 0.298153 7.4:-8575761 MS.gene007392:CDS
ATAACCAGGTTGAAGCTTAA+TGG 0.307755 7.4:+8576168 None:intergenic
GGCCACCTTCACCAGGCTAT+TGG 0.328340 7.4:-8576456 MS.gene007392:CDS
TTCATCACTATGCTATACTA+TGG 0.351229 7.4:-8575719 MS.gene007392:CDS
CAGACCAATGTTTATGTAAG+AGG 0.355685 7.4:-8575810 MS.gene007392:CDS
GAGTTTCTTGGAACAACATT+TGG 0.363278 7.4:-8575849 MS.gene007392:CDS
ACATTGGTCTGCAAAGTATA+AGG 0.365369 7.4:+8575822 None:intergenic
TAGACTAACACCTGAATGTT+GGG 0.377909 7.4:-8574366 MS.gene007392:CDS
TCAGCATCACCATATGGTTC+TGG 0.382882 7.4:-8574479 MS.gene007392:CDS
AACAGGAAGTGGATTTAAAT+CGG 0.399827 7.4:-8576224 MS.gene007392:intron
TCGGTTCGTCCGTTTCGATC+TGG 0.399991 7.4:-8576205 MS.gene007392:CDS
GTTGTAGTCTTTGGTGTTGA+GGG 0.401069 7.4:+8576377 None:intergenic
CCATATGGTGATGCTGAAAC+TGG 0.403239 7.4:+8574485 None:intergenic
CCAGTTTCAGCATCACCATA+TGG 0.414819 7.4:-8574485 MS.gene007392:CDS
TTGTGGATGATGTGCCAATA+AGG 0.417399 7.4:-8574700 MS.gene007392:CDS
ACAAAATAGGGCTATGAGTT+GGG 0.435041 7.4:-8574441 MS.gene007392:CDS
TACAATAATTATAAACCATA+TGG 0.435446 7.4:+8574408 None:intergenic
ATTAAACTCACAACAAAATA+GGG 0.447861 7.4:-8574453 MS.gene007392:CDS
AATGTTGTGTCACTCTTCCT+CGG 0.449121 7.4:+8574671 None:intergenic
GAAGTGGACATTGAGTTTCT+TGG 0.452892 7.4:-8575861 MS.gene007392:CDS
ATTTGGCTTGATAGAACCTC+AGG 0.462755 7.4:-8576340 MS.gene007392:intron
AGTGGTGATGGGAAAATTGT+AGG 0.464266 7.4:-8575786 MS.gene007392:CDS
TTTGAACTTGGCCAATAGCC+TGG 0.471985 7.4:+8576445 None:intergenic
TTTGTATATTGTGCAACAAA+TGG 0.475210 7.4:+8574554 None:intergenic
TTGGGTGCAAAGATACCATA+TGG 0.479888 7.4:-8574423 MS.gene007392:CDS
TCATCATGGGCAACAGAAGA+TGG 0.483074 7.4:-8574605 MS.gene007392:CDS
ATGTAAGAGGGAGTGGTGAT+GGG 0.484590 7.4:-8575797 MS.gene007392:CDS
AGCATAGTGATGAAAACCTT+TGG 0.487107 7.4:+8575728 None:intergenic
AACAAAATAGGGCTATGAGT+TGG 0.487818 7.4:-8574442 MS.gene007392:CDS
CCAAAATAGCCAGATCGAAA+CGG 0.490972 7.4:+8576196 None:intergenic
TATGTAAGAGGGAGTGGTGA+TGG 0.502994 7.4:-8575798 MS.gene007392:CDS
TGTTGTAGTCTTTGGTGTTG+AGG 0.517034 7.4:+8576376 None:intergenic
GCTTATTGGCCACCTTCACC+AGG 0.519429 7.4:-8576463 MS.gene007392:CDS
CAATATGGGATGCTTCATCA+TGG 0.519985 7.4:-8574619 MS.gene007392:CDS
AATGTTTATGTAAGAGGGAG+TGG 0.522067 7.4:-8575804 MS.gene007392:CDS
TTTAATCCACCAGAACCATA+TGG 0.527099 7.4:+8574470 None:intergenic
ATTATGTGTCAGATTTCTTG+TGG 0.531400 7.4:-8574717 MS.gene007392:intron
CTTCAACCTGGTTATACTGC+AGG 0.532390 7.4:-8576160 MS.gene007392:CDS
ATAGACTTGAACTTTGAACT+TGG 0.535880 7.4:+8576433 None:intergenic
CTTTGGTTTGATCCTACCAA+AGG 0.537930 7.4:-8575744 MS.gene007392:CDS
ATGTTGTGTCACTCTTCCTC+GGG 0.544493 7.4:+8574672 None:intergenic
GTGGCTTTATGGTTCAATAT+GGG 0.546084 7.4:-8574633 MS.gene007392:CDS
GCATCACCATATGGTTCTGG+TGG 0.546443 7.4:-8574476 MS.gene007392:CDS
ATAGACTAACACCTGAATGT+TGG 0.555533 7.4:-8574367 MS.gene007392:CDS
TATACAAATTTCAAAGCTAG+TGG 0.558654 7.4:-8574539 MS.gene007392:CDS
TTTGGTGTTGAGGGCCCCAA+CGG 0.560236 7.4:+8576386 None:intergenic
TCAAACAATGAAGCACATCC+TGG 0.560307 7.4:-8575894 MS.gene007392:CDS
AGACCAATGTTTATGTAAGA+GGG 0.563206 7.4:-8575809 MS.gene007392:CDS
GGCCAATAGCCTGGTGAAGG+TGG 0.575508 7.4:+8576454 None:intergenic
TCCACTTCATCATGGTAACC+AGG 0.575746 7.4:+8575876 None:intergenic
ACTCAATGTCCACTTCATCA+TGG 0.586098 7.4:+8575868 None:intergenic
ATGGCACCAACGAGGTGCAT+AGG 0.588771 7.4:+8574508 None:intergenic
TCCTGGTTACCATGATGAAG+TGG 0.598344 7.4:-8575877 MS.gene007392:CDS
TATATTGTGCAACAAATGGT+TGG 0.600462 7.4:+8574558 None:intergenic
GCACAGCCTATGCACCTCGT+TGG 0.605322 7.4:-8574514 MS.gene007392:CDS
TAGTGATGAAAACCTTTGGT+AGG 0.607983 7.4:+8575732 None:intergenic
GCTTCCATTAAGCTTCAACC+TGG 0.609226 7.4:-8576172 MS.gene007392:CDS
AATATGGGATGCTTCATCAT+GGG 0.615655 7.4:-8574618 MS.gene007392:CDS
ATTGAACCATAAAGCCACAT+TGG 0.615958 7.4:+8574638 None:intergenic
ACTCCCTCTTACATAAACAT+TGG 0.616456 7.4:+8575806 None:intergenic
ATAACTCCTGCAGTATAACC+AGG 0.626048 7.4:+8576154 None:intergenic
CATTTCCAATTAGACCAATG+TGG 0.641551 7.4:-8574652 MS.gene007392:CDS
TGCCAATAAGGAGGTACCCG+AGG 0.657088 7.4:-8574688 MS.gene007392:CDS
AGACTAACACCTGAATGTTG+GGG 0.661530 7.4:-8574365 MS.gene007392:CDS
ATGGTGATGCTGAAACTGGA+TGG 0.663075 7.4:+8574489 None:intergenic
CTTGGCCAATAGCCTGGTGA+AGG 0.674426 7.4:+8576451 None:intergenic
TGGATGATGTGCCAATAAGG+AGG 0.722240 7.4:-8574697 MS.gene007392:CDS
GAAACTGGATGGCACCAACG+AGG 0.789191 7.4:+8574500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATGATTGAATTAT+TGG - chr7.4:8574952-8574971 MS.gene007392:intron 10.0%
!! TACTAATAATTAATTAATCT+AGG + chr7.4:8575267-8575286 None:intergenic 10.0%
!!! AGAAAATAATATTTTTTTAG+AGG + chr7.4:8575826-8575845 None:intergenic 10.0%
!!! TAATAATCTAAAATAGTATA+GGG - chr7.4:8575285-8575304 MS.gene007392:intron 10.0%
!!! TATTATTTTCTAAGAAATAA+AGG - chr7.4:8575835-8575854 MS.gene007392:CDS 10.0%
!! TACAATAATTATAAACCATA+TGG + chr7.4:8576470-8576489 None:intergenic 15.0%
!!! ATTGTCATTGTTTTTTTTTA+TGG - chr7.4:8574623-8574642 MS.gene007392:CDS 15.0%
!!! GTAATAATCTAAAATAGTAT+AGG - chr7.4:8575284-8575303 MS.gene007392:intron 15.0%
!!! TGATATTTTGGAATTTTTTA+AGG - chr7.4:8575764-8575783 MS.gene007392:CDS 15.0%
!!! TTTTTTTTATGGTAAAAAAC+AGG - chr7.4:8574634-8574653 MS.gene007392:CDS 15.0%
!! AAATCGAATGGTTTATATTA+AGG + chr7.4:8575570-8575589 None:intergenic 20.0%
!! AACAAAATGCATTAACTATT+TGG - chr7.4:8574518-8574537 MS.gene007392:CDS 20.0%
!! ATTAAACTCACAACAAAATA+GGG - chr7.4:8576422-8576441 MS.gene007392:CDS 20.0%
!! CATATAGAAATACTAAATCA+AGG - chr7.4:8575894-8575913 MS.gene007392:CDS 20.0%
!! TTATATTAAGGTCAACAAAT+CGG + chr7.4:8575558-8575577 None:intergenic 20.0%
!!! ACATAAGATTTTTTTAACCA+TGG - chr7.4:8575466-8575485 MS.gene007392:intron 20.0%
!!! TTCTTAACTTTTCATTAGTT+GGG + chr7.4:8575989-8576008 None:intergenic 20.0%
!!! TTTCTTAACTTTTCATTAGT+TGG + chr7.4:8575990-8576009 None:intergenic 20.0%
! AAAATCATAACATAGAAGTG+TGG - chr7.4:8575933-8575952 MS.gene007392:intron 25.0%
! AAACCATTGATAAAATCGAA+TGG + chr7.4:8575582-8575601 None:intergenic 25.0%
! ATCAATTGGTATCAAAGTTT+AGG - chr7.4:8575731-8575750 MS.gene007392:CDS 25.0%
! GAAATCTGACACATAATTTA+AGG + chr7.4:8576155-8576174 None:intergenic 25.0%
! GATTAAACTCACAACAAAAT+AGG - chr7.4:8576421-8576440 MS.gene007392:CDS 25.0%
! TATACAAATTTCAAAGCTAG+TGG - chr7.4:8576336-8576355 MS.gene007392:intron 25.0%
! TTCTAACCATTGATATAGAT+CGG - chr7.4:8575522-8575541 MS.gene007392:intron 25.0%
! TTTGTATATTGTGCAACAAA+TGG + chr7.4:8576324-8576343 None:intergenic 25.0%
!! AAACCATTCGATTTTATCAA+TGG - chr7.4:8575576-8575595 MS.gene007392:intron 25.0%
!! AAATCATAACATAGAAGTGT+GGG - chr7.4:8575934-8575953 MS.gene007392:intron 25.0%
!! AAGTCTATGAACTTTTACAA+AGG - chr7.4:8574457-8574476 MS.gene007392:CDS 25.0%
!! ATTCGATTTTATCAATGGTT+TGG - chr7.4:8575581-8575600 MS.gene007392:intron 25.0%
!! TTAGTCTATGATCTCTTTTT+GGG + chr7.4:8576497-8576516 None:intergenic 25.0%
!! TTCTAAGAAATAAAGGAAGA+AGG - chr7.4:8575842-8575861 MS.gene007392:CDS 25.0%
!! TTGATTGGTTCTTTATCAAT+TGG - chr7.4:8575717-8575736 MS.gene007392:CDS 25.0%
!!! AGATTTTTTTAACCATGGTT+TGG - chr7.4:8575471-8575490 MS.gene007392:intron 25.0%
!!! TTTTGGAATTTTTTAAGGAG+TGG - chr7.4:8575769-8575788 MS.gene007392:CDS 25.0%
AGACCAATGTTTATGTAAGA+GGG - chr7.4:8575066-8575085 MS.gene007392:intron 30.0%
ATAAAGGAAGAAGGCAAATA+AGG - chr7.4:8575851-8575870 MS.gene007392:CDS 30.0%
ATAGACTTGAACTTTGAACT+TGG + chr7.4:8574445-8574464 None:intergenic 30.0%
ATATAAGTGTGATAGGGAAA+TGG - chr7.4:8575348-8575367 MS.gene007392:intron 30.0%
ATGAGGTATATAAGTGTGAT+AGG - chr7.4:8575341-8575360 MS.gene007392:intron 30.0%
ATTATGTGTCAGATTTCTTG+TGG - chr7.4:8576158-8576177 MS.gene007392:CDS 30.0%
CATTGTCCAATCTTAATCAA+TGG + chr7.4:8575417-8575436 None:intergenic 30.0%
GAGAAATGAAGTTTCATCTT+TGG - chr7.4:8575114-8575133 MS.gene007392:intron 30.0%
GTGACTTACATTATCTCTTT+AGG + chr7.4:8575185-8575204 None:intergenic 30.0%
TAGCTAACTATAGTGATTCT+TGG - chr7.4:8575606-8575625 MS.gene007392:intron 30.0%
TATATTGTGCAACAAATGGT+TGG + chr7.4:8576320-8576339 None:intergenic 30.0%
TGAGGTATATAAGTGTGATA+GGG - chr7.4:8575342-8575361 MS.gene007392:intron 30.0%
TTATGGTAAAAAACAGGAAG+TGG - chr7.4:8574640-8574659 MS.gene007392:CDS 30.0%
TTCATCACTATGCTATACTA+TGG - chr7.4:8575156-8575175 MS.gene007392:intron 30.0%
! AACAGGAAGTGGATTTAAAT+CGG - chr7.4:8574651-8574670 MS.gene007392:CDS 30.0%
! AATCATAACATAGAAGTGTG+GGG - chr7.4:8575935-8575954 MS.gene007392:intron 30.0%
! CATTGATTAAGATTGGACAA+TGG - chr7.4:8575415-8575434 MS.gene007392:intron 30.0%
! GGCAAGACTTAATGATATTT+TGG - chr7.4:8575752-8575771 MS.gene007392:CDS 30.0%
! TAGAGAAAACTACATTTTCG+AGG + chr7.4:8574835-8574854 None:intergenic 30.0%
!! ATGCATTTTGTTGTAGTCTT+TGG + chr7.4:8574510-8574529 None:intergenic 30.0%
!! CATTTTCAAGCAATGCTTAT+TGG - chr7.4:8574398-8574417 MS.gene007392:CDS 30.0%
!! GTTAGTCTATGATCTCTTTT+TGG + chr7.4:8576498-8576517 None:intergenic 30.0%
AACAAAATAGGGCTATGAGT+TGG - chr7.4:8576433-8576452 MS.gene007392:CDS 35.0%
AATATGGGATGCTTCATCAT+GGG - chr7.4:8576257-8576276 MS.gene007392:intron 35.0%
AATGTTTATGTAAGAGGGAG+TGG - chr7.4:8575071-8575090 MS.gene007392:intron 35.0%
ACAAAATAGGGCTATGAGTT+GGG - chr7.4:8576434-8576453 MS.gene007392:CDS 35.0%
ACTCCCTCTTACATAAACAT+TGG + chr7.4:8575072-8575091 None:intergenic 35.0%
AGCATAGTGATGAAAACCTT+TGG + chr7.4:8575150-8575169 None:intergenic 35.0%
ATAGACTAACACCTGAATGT+TGG - chr7.4:8576508-8576527 MS.gene007392:CDS 35.0%
ATTGAACCATAAAGCCACAT+TGG + chr7.4:8576240-8576259 None:intergenic 35.0%
CAGACCAATGTTTATGTAAG+AGG - chr7.4:8575065-8575084 MS.gene007392:intron 35.0%
CATTTCCAATTAGACCAATG+TGG - chr7.4:8576223-8576242 MS.gene007392:intron 35.0%
CTAAATCAAGGTCACATGAA+TGG - chr7.4:8575906-8575925 MS.gene007392:intron 35.0%
GACTATCCGATCTATATCAA+TGG + chr7.4:8575531-8575550 None:intergenic 35.0%
GAGTTTCTTGGAACAACATT+TGG - chr7.4:8575026-8575045 MS.gene007392:intron 35.0%
TAGACTAACACCTGAATGTT+GGG - chr7.4:8576509-8576528 MS.gene007392:CDS 35.0%
TAGTGATGAAAACCTTTGGT+AGG + chr7.4:8575146-8575165 None:intergenic 35.0%
TGTCCAATCTTAATCAATGG+TGG + chr7.4:8575414-8575433 None:intergenic 35.0%
TTTAAGGAGTGGAAAATGAG+AGG - chr7.4:8575780-8575799 MS.gene007392:CDS 35.0%
TTTAATCCACCAGAACCATA+TGG + chr7.4:8576408-8576427 None:intergenic 35.0%
TTTCACATTCAGAGACATTG+AGG + chr7.4:8575232-8575251 None:intergenic 35.0%
! AAAGGTTTTACAAACCGTTG+GGG - chr7.4:8574475-8574494 MS.gene007392:CDS 35.0%
! AATAGTATAGGGTACTAGAC+AGG - chr7.4:8575296-8575315 MS.gene007392:intron 35.0%
! ACAAAGGTTTTACAAACCGT+TGG - chr7.4:8574473-8574492 MS.gene007392:CDS 35.0%
! ACATTGGTCTGCAAAGTATA+AGG + chr7.4:8575056-8575075 None:intergenic 35.0%
! ATAACCAGGTTGAAGCTTAA+TGG + chr7.4:8574710-8574729 None:intergenic 35.0%
! ATTAGACCAATGTGGCTTTA+TGG - chr7.4:8576231-8576250 MS.gene007392:intron 35.0%
! CAAAGGTTTTACAAACCGTT+GGG - chr7.4:8574474-8574493 MS.gene007392:CDS 35.0%
! CACTACTTTCTCTTTTGATG+AGG - chr7.4:8575324-8575343 MS.gene007392:intron 35.0%
! TAAAGCCACATTGGTCTAAT+TGG + chr7.4:8576231-8576250 None:intergenic 35.0%
! TCTCCACCATTGATTAAGAT+TGG - chr7.4:8575408-8575427 MS.gene007392:intron 35.0%
!! GTGGCTTTATGGTTCAATAT+GGG - chr7.4:8576242-8576261 MS.gene007392:intron 35.0%
!! TGTGGCTTTATGGTTCAATA+TGG - chr7.4:8576241-8576260 MS.gene007392:intron 35.0%
!! TTTTAACCATGGTTTGGACT+TGG - chr7.4:8575477-8575496 MS.gene007392:intron 35.0%
!!! TTAGGTGGCATTGTTTTGAT+TGG - chr7.4:8575702-8575721 MS.gene007392:CDS 35.0%
AAGGCAAATAAGGATGTGAC+AGG - chr7.4:8575861-8575880 MS.gene007392:CDS 40.0%
ACTCAATGTCCACTTCATCA+TGG + chr7.4:8575010-8575029 None:intergenic 40.0%
AGACTAACACCTGAATGTTG+GGG - chr7.4:8576510-8576529 MS.gene007392:CDS 40.0%
AGAGAATCCACAATTGAGCT+TGG - chr7.4:8575672-8575691 MS.gene007392:intron 40.0%
ATAACTCCTGCAGTATAACC+AGG + chr7.4:8574724-8574743 None:intergenic 40.0%
ATTGAGCTTGGATTCTGCTT+AGG - chr7.4:8575684-8575703 MS.gene007392:intron 40.0%
CAAACATGCATAGAGTTCAC+TGG - chr7.4:8574871-8574890 MS.gene007392:intron 40.0%
CAATATGGGATGCTTCATCA+TGG - chr7.4:8576256-8576275 MS.gene007392:intron 40.0%
CATGACATGCATGTTTCGAT+TGG - chr7.4:8574771-8574790 MS.gene007392:intron 40.0%
CCAAAATAGCCAGATCGAAA+CGG + chr7.4:8574682-8574701 None:intergenic 40.0%
GAAGTGGACATTGAGTTTCT+TGG - chr7.4:8575014-8575033 MS.gene007392:intron 40.0%
TAATCACCAAGTCCAAACCA+TGG + chr7.4:8575486-8575505 None:intergenic 40.0%
TCAAACAATGAAGCACATCC+TGG - chr7.4:8574981-8575000 MS.gene007392:intron 40.0%
TTGGGTGCAAAGATACCATA+TGG - chr7.4:8576452-8576471 MS.gene007392:CDS 40.0%
TTGTGGATGATGTGCCAATA+AGG - chr7.4:8576175-8576194 MS.gene007392:CDS 40.0%
! AATGTTGTGTCACTCTTCCT+CGG + chr7.4:8576207-8576226 None:intergenic 40.0%
!! AGTGGTGATGGGAAAATTGT+AGG - chr7.4:8575089-8575108 MS.gene007392:intron 40.0%
!! ATTTGGCTTGATAGAACCTC+AGG - chr7.4:8574535-8574554 MS.gene007392:CDS 40.0%
!! CTTTGGTTTGATCCTACCAA+AGG - chr7.4:8575131-8575150 MS.gene007392:intron 40.0%
!! GTTGTAGTCTTTGGTGTTGA+GGG + chr7.4:8574501-8574520 None:intergenic 40.0%
!! TGTTGTAGTCTTTGGTGTTG+AGG + chr7.4:8574502-8574521 None:intergenic 40.0%
ATGATCAGACTCAGAACCTG+AGG + chr7.4:8574554-8574573 None:intergenic 45.0%
ATGTAAGAGGGAGTGGTGAT+GGG - chr7.4:8575078-8575097 MS.gene007392:intron 45.0%
CCAGTTTCAGCATCACCATA+TGG - chr7.4:8576390-8576409 MS.gene007392:CDS 45.0%
CTTCAACCTGGTTATACTGC+AGG - chr7.4:8574715-8574734 MS.gene007392:intron 45.0%
GCAGAATCCAAGCTCAATTG+TGG + chr7.4:8575682-8575701 None:intergenic 45.0%
GCTTCCATTAAGCTTCAACC+TGG - chr7.4:8574703-8574722 MS.gene007392:CDS 45.0%
TATGTAAGAGGGAGTGGTGA+TGG - chr7.4:8575077-8575096 MS.gene007392:intron 45.0%
TCAGCATCACCATATGGTTC+TGG - chr7.4:8576396-8576415 MS.gene007392:CDS 45.0%
TCATCATGGGCAACAGAAGA+TGG - chr7.4:8576270-8576289 MS.gene007392:intron 45.0%
TCCACTTCATCATGGTAACC+AGG + chr7.4:8575002-8575021 None:intergenic 45.0%
TCCTGGTTACCATGATGAAG+TGG - chr7.4:8574998-8575017 MS.gene007392:intron 45.0%
TGGATGATGTGCCAATAAGG+AGG - chr7.4:8576178-8576197 MS.gene007392:CDS 45.0%
TTTGAACTTGGCCAATAGCC+TGG + chr7.4:8574433-8574452 None:intergenic 45.0%
! ATGGTGATGCTGAAACTGGA+TGG + chr7.4:8576389-8576408 None:intergenic 45.0%
! ATGTTGTGTCACTCTTCCTC+GGG + chr7.4:8576206-8576225 None:intergenic 45.0%
! CCATATGGTGATGCTGAAAC+TGG + chr7.4:8576393-8576412 None:intergenic 45.0%
! CCGTTTCGATCTGGCTATTT+TGG - chr7.4:8574679-8574698 MS.gene007392:CDS 45.0%
GAGCTTGGATTCTGCTTAGG+TGG - chr7.4:8575687-8575706 MS.gene007392:intron 50.0%
GGTGGAGATCGTAACTGTAG+TGG + chr7.4:8575396-8575415 None:intergenic 50.0%
TTCCTCGGGTACCTCCTTAT+TGG + chr7.4:8576192-8576211 None:intergenic 50.0%
!! GCATCACCATATGGTTCTGG+TGG - chr7.4:8576399-8576418 MS.gene007392:CDS 50.0%
ATGGCACCAACGAGGTGCAT+AGG + chr7.4:8576370-8576389 None:intergenic 55.0%
CTTGGCCAATAGCCTGGTGA+AGG + chr7.4:8574427-8574446 None:intergenic 55.0%
GAAACTGGATGGCACCAACG+AGG + chr7.4:8576378-8576397 None:intergenic 55.0%
GCTTATTGGCCACCTTCACC+AGG - chr7.4:8574412-8574431 MS.gene007392:CDS 55.0%
! TCGGTTCGTCCGTTTCGATC+TGG - chr7.4:8574670-8574689 MS.gene007392:CDS 55.0%
!! TGCCAATAAGGAGGTACCCG+AGG - chr7.4:8576187-8576206 MS.gene007392:CDS 55.0%
!! TTTGGTGTTGAGGGCCCCAA+CGG + chr7.4:8574492-8574511 None:intergenic 55.0%
GCACAGCCTATGCACCTCGT+TGG - chr7.4:8576361-8576380 MS.gene007392:CDS 60.0%
GGCCAATAGCCTGGTGAAGG+TGG + chr7.4:8574424-8574443 None:intergenic 60.0%
GGCCACCTTCACCAGGCTAT+TGG - chr7.4:8574419-8574438 MS.gene007392:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 8574361 8576536 8574361 ID=MS.gene007392
chr7.4 mRNA 8574361 8576536 8574361 ID=MS.gene007392.t1;Parent=MS.gene007392
chr7.4 exon 8576341 8576536 8576341 ID=MS.gene007392.t1.exon1;Parent=MS.gene007392.t1
chr7.4 CDS 8576341 8576536 8576341 ID=cds.MS.gene007392.t1;Parent=MS.gene007392.t1
chr7.4 exon 8576141 8576241 8576141 ID=MS.gene007392.t1.exon2;Parent=MS.gene007392.t1
chr7.4 CDS 8576141 8576241 8576141 ID=cds.MS.gene007392.t1;Parent=MS.gene007392.t1
chr7.4 exon 8575702 8575919 8575702 ID=MS.gene007392.t1.exon3;Parent=MS.gene007392.t1
chr7.4 CDS 8575702 8575919 8575702 ID=cds.MS.gene007392.t1;Parent=MS.gene007392.t1
chr7.4 exon 8574361 8574727 8574361 ID=MS.gene007392.t1.exon4;Parent=MS.gene007392.t1
chr7.4 CDS 8574361 8574727 8574361 ID=cds.MS.gene007392.t1;Parent=MS.gene007392.t1
Gene Sequence

>MS.gene007392

ATGGCTCTTTTTGTAGTTGCTATTTTATTCTTAATGACATTTTCAAGCAATGCTTATTGGCCACCTTCACCAGGCTATTGGCCAAGTTCAAAGTTCAAGTCTATGAACTTTTACAAAGGTTTTACAAACCGTTGGGGCCCTCAACACCAAAGACTACAACAAAATGCATTAACTATTTGGCTTGATAGAACCTCAGGTTCTGAGTCTGATCATCAGTTACATAAGTTTTCTGCTTCTTGTTAAATATCATTGAAATTTAATTATTGTCATTGTTTTTTTTTATGGTAAAAAACAGGAAGTGGATTTAAATCGGTTCGTCCGTTTCGATCTGGCTATTTTGGTGCTTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACATCTTTCTATGTAAGATGTTACAGCATGACATGCATGTTTCGATTGGCACTTAGTTTCACGAAATTACGATGACACTGTGTTGAACCTCGAAAATGTAGTTTTCTCTAGAACTTACTGTCAATTCAAACATGCATAGAGTTCACTGGTTTGATTGTTATAGCTTATACATTTTGTTTAGATTGTTAATTACTATTAGCACTAATGATAATTAATGATTGAATTATTGGCAGCTATCAAACAATGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTTGGAACAACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATGTAAGAGGGAGTGGTGATGGGAAAATTGTAGGTAGAGAAATGAAGTTTCATCTTTGGTTTGATCCTACCAAAGGTTTTCATCACTATGCTATACTATGGAGTCCTAAAGAGATAATGTAAGTCACTGTATAATTTAATTATATTATATTCCTCAATGTCTCTGAATGTGAAATTGAATTGAATGCCTAGATTAATTAATTATTAGTAATAATCTAAAATAGTATAGGGTACTAGACAGGACATGCACTACTTTCTCTTTTGATGAGGTATATAAGTGTGATAGGGAAATGGACTTACATATGCACTCAATAGTCCACTACAGTTACGATCTCCACCATTGATTAAGATTGGACAATGGAGACTGATTGTTGAACTTATAATTGAACACATAAGATTTTTTTAACCATGGTTTGGACTTGGTGATTATAGTGACTCTTGAAAATTCTAACCATTGATATAGATCGGATAGTCGAGACCGATTTGTTGACCTTAATATAAACCATTCGATTTTATCAATGGTTTGGATTAGCTAACTATAGTGATTCTTGGAAATTATGAGAGCATGAAATCTGATTTGCAAGATAAGAGATGAAGAGAATCCACAATTGAGCTTGGATTCTGCTTAGGTGGCATTGTTTTGATTGGTTCTTTATCAATTGGTATCAAAGTTTAGGCAAGACTTAATGATATTTTGGAATTTTTTAAGGAGTGGAAAATGAGAGGATAACAACATAATTTTCTATCCTCTAAAAAAATATTATTTTCTAAGAAATAAAGGAAGAAGGCAAATAAGGATGTGACAGGATTAAAATATCATATAGAAATACTAAATCAAGGTCACATGAATGGCACAAAAATCATAACATAGAAGTGTGGGGAAACAAATATGATAGTAGCAGTGTAGCACCCAACTAATGAAAAGTTAAGAAAGTGACAGTAAATTTATTTTATTTATGAAAGATTAAAACTACTGTACTGTATATACTAATACTAGTAGTAACGTTCAAAAAGCTGTAGCTATTATATGAATCATAGAAATGATTATTAATACTATATAGTTGCTTTATACTGACCTTAAATTATGTGTCAGATTTCTTGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGACACAACATTTCCAATTAGACCAATGTGGCTTTATGGTTCAATATGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAGATACCAACCATTTGTTGCACAATATACAAATTTCAAAGCTAGTGGTTGCACAGCCTATGCACCTCGTTGGTGCCATCCAGTTTCAGCATCACCATATGGTTCTGGTGGATTAAACTCACAACAAAATAGGGCTATGAGTTGGGTGCAAAGATACCATATGGTTTATAATTATTGTAGAGACCCAAAAAGAGATCATAGACTAACACCTGAATGTTGGGGTTAA
Protein sequence

>MS.gene007392.t1

MALFVVAILFLMTFSSNAYWPPSPGYWPSSKFKSMNFYKGFTNRWGPQHQRLQQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITSFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYVRGSGDGKIVGREMKFHLWFDPTKGFHHYAILWSPKEIIFLVDDVPIRRYPRKSDTTFPIRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAQYTNFKASGCTAYAPRWCHPVSASPYGSGGLNSQQNRAMSWVQRYHMVYNYCRDPKRDHRLTPECWG