Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71577.t1 | XP_013469939.1 | 97.6 | 296 | 6 | 1 | 1 | 295 | 1 | 296 | 2.10E-172 | 614.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71577.t1 | Q9ZVK1 | 73.3 | 288 | 77 | 0 | 8 | 295 | 12 | 299 | 1.7e-133 | 476.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71577.t1 | A0A072VQB4 | 97.6 | 296 | 6 | 1 | 1 | 295 | 1 | 296 | 1.5e-172 | 614.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene71577 | MS.gene91400 | PPI |
MS.gene71577 | MS.gene99665 | PPI |
MS.gene45619 | MS.gene71577 | PPI |
MS.gene71577 | MS.gene035020 | PPI |
MS.gene71577 | MS.gene22395 | PPI |
MS.gene71577 | MS.gene011681 | PPI |
MS.gene44431 | MS.gene71577 | PPI |
MS.gene71577 | MS.gene051431 | PPI |
MS.gene60167 | MS.gene71577 | PPI |
MS.gene71577 | MS.gene93839 | PPI |
MS.gene71577 | MS.gene011682 | PPI |
MS.gene71577 | MS.gene47447 | PPI |
MS.gene007392 | MS.gene71577 | PPI |
MS.gene44430 | MS.gene71577 | PPI |
MS.gene71577 | MS.gene007553 | PPI |
MS.gene71577 | MS.gene029764 | PPI |
MS.gene71577 | MS.gene45618 | PPI |
MS.gene71577 | MS.gene49973 | PPI |
MS.gene020642 | MS.gene71577 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71577.t1 | MTR_1g105900 | 97.635 | 296 | 6 | 1 | 1 | 295 | 1 | 296 | 0.0 | 598 |
MS.gene71577.t1 | MTR_4g097700 | 53.282 | 259 | 117 | 4 | 33 | 290 | 69 | 324 | 3.19e-100 | 297 |
MS.gene71577.t1 | MTR_4g097640 | 53.282 | 259 | 117 | 4 | 33 | 290 | 32 | 287 | 4.50e-100 | 295 |
MS.gene71577.t1 | MTR_4g097670 | 53.282 | 259 | 117 | 4 | 33 | 290 | 32 | 287 | 4.50e-100 | 295 |
MS.gene71577.t1 | MTR_1g105495 | 46.875 | 288 | 147 | 3 | 8 | 292 | 12 | 296 | 3.26e-97 | 288 |
MS.gene71577.t1 | MTR_4g128410 | 48.239 | 284 | 141 | 2 | 11 | 292 | 3 | 282 | 2.84e-96 | 285 |
MS.gene71577.t1 | MTR_7g084770 | 50.388 | 258 | 126 | 2 | 33 | 290 | 32 | 287 | 5.05e-94 | 280 |
MS.gene71577.t1 | MTR_7g084760 | 50.388 | 258 | 126 | 2 | 33 | 290 | 32 | 287 | 1.25e-93 | 279 |
MS.gene71577.t1 | MTR_7g084750 | 48.754 | 281 | 136 | 3 | 16 | 290 | 9 | 287 | 2.24e-93 | 278 |
MS.gene71577.t1 | MTR_7g093530 | 48.399 | 281 | 143 | 1 | 12 | 292 | 3 | 281 | 9.35e-93 | 276 |
MS.gene71577.t1 | MTR_3g084620 | 45.862 | 290 | 147 | 2 | 8 | 295 | 1 | 282 | 2.75e-92 | 275 |
MS.gene71577.t1 | MTR_3g084630 | 47.810 | 274 | 133 | 2 | 24 | 295 | 17 | 282 | 8.09e-92 | 274 |
MS.gene71577.t1 | MTR_4g128570 | 48.364 | 275 | 126 | 2 | 17 | 291 | 15 | 273 | 2.43e-91 | 272 |
MS.gene71577.t1 | MTR_4g045853 | 44.178 | 292 | 150 | 5 | 6 | 290 | 3 | 288 | 5.32e-91 | 272 |
MS.gene71577.t1 | MTR_4g126920 | 48.746 | 279 | 131 | 3 | 17 | 292 | 14 | 283 | 2.32e-90 | 270 |
MS.gene71577.t1 | MTR_4g128580 | 50.373 | 268 | 123 | 3 | 30 | 291 | 23 | 286 | 8.93e-90 | 269 |
MS.gene71577.t1 | MTR_2g038860 | 47.887 | 284 | 137 | 2 | 18 | 294 | 11 | 290 | 1.62e-89 | 268 |
MS.gene71577.t1 | MTR_2g038705 | 47.887 | 284 | 137 | 2 | 18 | 294 | 11 | 290 | 1.62e-89 | 268 |
MS.gene71577.t1 | MTR_6g033055 | 49.035 | 259 | 130 | 2 | 33 | 291 | 32 | 288 | 2.65e-89 | 268 |
MS.gene71577.t1 | MTR_8g081040 | 47.826 | 276 | 135 | 2 | 18 | 291 | 14 | 282 | 2.71e-89 | 268 |
MS.gene71577.t1 | MTR_6g033085 | 49.035 | 259 | 130 | 2 | 33 | 291 | 32 | 288 | 1.27e-88 | 266 |
MS.gene71577.t1 | MTR_6g088320 | 43.509 | 285 | 149 | 3 | 8 | 290 | 9 | 283 | 5.18e-88 | 265 |
MS.gene71577.t1 | MTR_4g128400 | 46.975 | 281 | 145 | 2 | 10 | 290 | 7 | 283 | 9.02e-88 | 264 |
MS.gene71577.t1 | MTR_5g091730 | 47.985 | 273 | 135 | 2 | 18 | 290 | 13 | 278 | 1.29e-87 | 263 |
MS.gene71577.t1 | MTR_2g089140 | 43.493 | 292 | 151 | 5 | 6 | 290 | 2 | 286 | 2.18e-87 | 263 |
MS.gene71577.t1 | MTR_8g102910 | 44.361 | 266 | 144 | 2 | 27 | 290 | 16 | 279 | 1.18e-82 | 251 |
MS.gene71577.t1 | MTR_3g089540 | 46.212 | 264 | 135 | 2 | 28 | 290 | 25 | 282 | 1.34e-81 | 248 |
MS.gene71577.t1 | MTR_8g102220 | 44.981 | 269 | 126 | 4 | 24 | 290 | 18 | 266 | 3.79e-81 | 246 |
MS.gene71577.t1 | MTR_4g128590 | 42.955 | 291 | 135 | 4 | 8 | 291 | 10 | 276 | 3.86e-81 | 246 |
MS.gene71577.t1 | MTR_2g089140 | 47.768 | 224 | 109 | 3 | 74 | 290 | 1 | 223 | 2.63e-78 | 238 |
MS.gene71577.t1 | MTR_8g013055 | 42.215 | 289 | 158 | 5 | 6 | 290 | 2 | 285 | 8.29e-76 | 233 |
MS.gene71577.t1 | MTR_7g056090 | 43.463 | 283 | 150 | 6 | 11 | 292 | 10 | 283 | 5.93e-71 | 221 |
MS.gene71577.t1 | MTR_7g102260 | 37.294 | 303 | 167 | 9 | 1 | 291 | 1 | 292 | 9.98e-62 | 197 |
MS.gene71577.t1 | MTR_1g063020 | 38.686 | 274 | 149 | 8 | 25 | 290 | 32 | 294 | 2.81e-61 | 196 |
MS.gene71577.t1 | MTR_4g057450 | 36.156 | 307 | 167 | 9 | 2 | 290 | 9 | 304 | 1.09e-60 | 195 |
MS.gene71577.t1 | MTR_2g049030 | 38.095 | 294 | 162 | 9 | 10 | 295 | 1 | 282 | 3.77e-58 | 188 |
MS.gene71577.t1 | MTR_2g049130 | 40.816 | 245 | 139 | 5 | 33 | 276 | 29 | 268 | 1.07e-56 | 184 |
MS.gene71577.t1 | MTR_1g033420 | 37.594 | 266 | 155 | 7 | 33 | 292 | 33 | 293 | 1.09e-54 | 180 |
MS.gene71577.t1 | MTR_8g064180 | 38.554 | 249 | 142 | 6 | 51 | 290 | 64 | 310 | 7.94e-53 | 175 |
MS.gene71577.t1 | MTR_2g095800 | 35.766 | 274 | 158 | 8 | 25 | 290 | 46 | 309 | 9.86e-52 | 172 |
MS.gene71577.t1 | MTR_5g029100 | 34.307 | 274 | 168 | 6 | 28 | 292 | 37 | 307 | 1.25e-50 | 171 |
MS.gene71577.t1 | MTR_8g090100 | 36.232 | 276 | 157 | 8 | 28 | 292 | 16 | 283 | 5.20e-50 | 168 |
MS.gene71577.t1 | MTR_5g029100 | 34.874 | 238 | 143 | 6 | 64 | 292 | 42 | 276 | 2.15e-45 | 156 |
MS.gene71577.t1 | MTR_8g479340 | 32.632 | 190 | 67 | 3 | 103 | 292 | 9 | 137 | 5.84e-30 | 110 |
MS.gene71577.t1 | MTR_8g032640 | 28.866 | 194 | 130 | 4 | 35 | 226 | 13 | 200 | 2.63e-13 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71577.t1 | AT2G14620 | 73.264 | 288 | 77 | 0 | 8 | 295 | 12 | 299 | 2.02e-168 | 469 |
MS.gene71577.t1 | AT2G14620 | 75.000 | 232 | 58 | 0 | 64 | 295 | 18 | 249 | 3.92e-139 | 393 |
MS.gene71577.t1 | AT2G14620 | 72.385 | 239 | 65 | 1 | 57 | 295 | 1 | 238 | 7.35e-136 | 384 |
MS.gene71577.t1 | AT1G11545 | 47.440 | 293 | 145 | 5 | 6 | 292 | 12 | 301 | 8.20e-98 | 290 |
MS.gene71577.t1 | AT4G37800 | 47.931 | 290 | 144 | 6 | 4 | 291 | 6 | 290 | 4.23e-96 | 285 |
MS.gene71577.t1 | AT5G65730 | 50.965 | 259 | 123 | 4 | 33 | 290 | 35 | 290 | 7.14e-96 | 285 |
MS.gene71577.t1 | AT3G23730 | 48.387 | 279 | 140 | 2 | 15 | 290 | 9 | 286 | 1.27e-94 | 281 |
MS.gene71577.t1 | AT5G13870 | 46.552 | 290 | 152 | 3 | 1 | 290 | 1 | 287 | 1.45e-94 | 281 |
MS.gene71577.t1 | AT5G13870 | 46.552 | 290 | 152 | 3 | 1 | 290 | 1 | 287 | 1.45e-94 | 281 |
MS.gene71577.t1 | AT5G13870 | 46.552 | 290 | 152 | 3 | 1 | 290 | 1 | 287 | 1.45e-94 | 281 |
MS.gene71577.t1 | AT5G57550 | 47.163 | 282 | 139 | 3 | 14 | 290 | 6 | 282 | 2.05e-92 | 275 |
MS.gene71577.t1 | AT5G57530 | 49.630 | 270 | 124 | 4 | 28 | 292 | 22 | 284 | 8.25e-91 | 271 |
MS.gene71577.t1 | AT2G06850 | 47.350 | 283 | 147 | 2 | 8 | 290 | 10 | 290 | 2.30e-89 | 268 |
MS.gene71577.t1 | AT4G30270 | 47.350 | 283 | 127 | 4 | 9 | 291 | 6 | 266 | 4.96e-89 | 266 |
MS.gene71577.t1 | AT4G03210 | 46.715 | 274 | 142 | 3 | 18 | 290 | 14 | 284 | 8.81e-89 | 266 |
MS.gene71577.t1 | AT5G48070 | 46.099 | 282 | 142 | 5 | 12 | 291 | 9 | 282 | 2.28e-88 | 265 |
MS.gene71577.t1 | AT2G18800 | 46.021 | 289 | 139 | 3 | 17 | 291 | 12 | 297 | 2.40e-88 | 266 |
MS.gene71577.t1 | AT5G57560 | 44.043 | 277 | 146 | 2 | 19 | 290 | 9 | 281 | 2.51e-86 | 260 |
MS.gene71577.t1 | AT5G57540 | 47.529 | 263 | 134 | 2 | 31 | 292 | 24 | 283 | 2.59e-86 | 260 |
MS.gene71577.t1 | AT4G25810 | 43.902 | 287 | 151 | 3 | 8 | 290 | 3 | 283 | 1.34e-85 | 258 |
MS.gene71577.t1 | AT4G14130 | 45.683 | 278 | 145 | 3 | 15 | 290 | 11 | 284 | 3.26e-85 | 257 |
MS.gene71577.t1 | AT4G28850 | 43.816 | 283 | 151 | 3 | 19 | 295 | 12 | 292 | 6.45e-85 | 257 |
MS.gene71577.t1 | AT2G06850 | 52.838 | 229 | 106 | 2 | 62 | 290 | 4 | 230 | 7.55e-84 | 252 |
MS.gene71577.t1 | AT4G30290 | 46.975 | 281 | 141 | 4 | 12 | 291 | 4 | 277 | 1.05e-82 | 251 |
MS.gene71577.t1 | AT4G30280 | 47.687 | 281 | 139 | 4 | 12 | 291 | 9 | 282 | 1.67e-82 | 250 |
MS.gene71577.t1 | AT4G03210 | 50.661 | 227 | 110 | 2 | 65 | 290 | 31 | 256 | 1.23e-81 | 247 |
MS.gene71577.t1 | AT3G25050 | 46.332 | 259 | 134 | 4 | 33 | 290 | 35 | 289 | 2.25e-81 | 248 |
MS.gene71577.t1 | AT1G65310 | 48.679 | 265 | 129 | 3 | 28 | 291 | 24 | 282 | 2.27e-81 | 247 |
MS.gene71577.t1 | AT1G65310 | 48.679 | 265 | 129 | 3 | 28 | 291 | 46 | 304 | 2.75e-81 | 248 |
MS.gene71577.t1 | AT4G25820 | 45.489 | 266 | 141 | 2 | 28 | 292 | 25 | 287 | 4.20e-79 | 242 |
MS.gene71577.t1 | AT4G13090 | 42.294 | 279 | 154 | 4 | 17 | 290 | 12 | 288 | 8.79e-75 | 231 |
MS.gene71577.t1 | AT4G13080 | 40.278 | 288 | 159 | 5 | 11 | 290 | 9 | 291 | 1.19e-72 | 226 |
MS.gene71577.t1 | AT1G14720 | 37.288 | 295 | 164 | 7 | 12 | 290 | 1 | 290 | 1.20e-60 | 196 |
MS.gene71577.t1 | AT1G32170 | 40.541 | 259 | 140 | 8 | 44 | 293 | 44 | 297 | 2.83e-56 | 185 |
MS.gene71577.t1 | AT2G36870 | 37.956 | 274 | 151 | 8 | 25 | 290 | 35 | 297 | 1.02e-55 | 182 |
MS.gene71577.t1 | AT2G01850 | 35.862 | 290 | 177 | 6 | 6 | 290 | 5 | 290 | 2.64e-55 | 182 |
MS.gene71577.t1 | AT1G10550 | 36.187 | 257 | 149 | 6 | 47 | 290 | 55 | 309 | 7.37e-52 | 172 |
MS.gene71577.t1 | AT3G44990 | 35.036 | 274 | 159 | 8 | 25 | 290 | 31 | 293 | 2.01e-50 | 168 |
MS.gene71577.t1 | AT4G18990 | 36.090 | 266 | 150 | 7 | 44 | 292 | 52 | 314 | 4.58e-48 | 164 |
MS.gene71577.t1 | AT3G48580 | 36.122 | 263 | 138 | 8 | 38 | 290 | 31 | 273 | 1.71e-44 | 152 |
MS.gene71577.t1 | AT3G48580 | 36.596 | 235 | 118 | 7 | 63 | 290 | 4 | 214 | 2.00e-42 | 145 |
MS.gene71577.t1 | AT4G18990 | 36.453 | 203 | 113 | 5 | 104 | 292 | 40 | 240 | 2.19e-38 | 137 |
MS.gene71577.t1 | AT2G36870 | 40.411 | 146 | 77 | 3 | 25 | 162 | 35 | 178 | 9.91e-29 | 108 |
MS.gene71577.t1 | AT3G48580 | 30.337 | 267 | 128 | 9 | 38 | 290 | 31 | 253 | 4.57e-28 | 109 |
Find 71 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAAACTTATCTTCTTCTT+TGG | 0.192554 | 1.4:+81687312 | MS.gene71577:CDS |
CAAGTCTATTTCATCTCTAT+TGG | 0.194748 | 1.4:-81688568 | None:intergenic |
TGGTTTCTATACACTCTTAT+AGG | 0.254859 | 1.4:-81689601 | None:intergenic |
GAAATAGACTTGGAGTTTCT+TGG | 0.266039 | 1.4:+81688579 | MS.gene71577:CDS |
ATATTTGTTTGAAGAATATA+TGG | 0.266432 | 1.4:-81688618 | None:intergenic |
ATTCCTTAGGAAGATTGTTT+TGG | 0.294463 | 1.4:-81689942 | None:intergenic |
ATAAGGACTTCTTTGTGATA+TGG | 0.295427 | 1.4:+81687397 | MS.gene71577:CDS |
AGACTCATTGGTTGCCATCT+AGG | 0.322432 | 1.4:-81689646 | None:intergenic |
TTAGTGAGCTAAAGTTAAAT+TGG | 0.323089 | 1.4:-81689840 | None:intergenic |
CAAAACTTATCTTCTTCTTT+GGG | 0.344087 | 1.4:+81687313 | MS.gene71577:CDS |
CATCCCCTGTGGTCAATACT+TGG | 0.347643 | 1.4:-81689974 | None:intergenic |
AAGTCTATTTCATCTCTATT+GGG | 0.354185 | 1.4:-81688567 | None:intergenic |
TCCACAAGACAGAATAAGTA+TGG | 0.354945 | 1.4:-81688707 | None:intergenic |
TTCAACAGGTGACTTCAATA+AGG | 0.362687 | 1.4:+81687380 | MS.gene71577:CDS |
AAGAGATTTCTTACACAATC+TGG | 0.365282 | 1.4:-81688737 | None:intergenic |
GTCAGATGTGTTTACATGAT+TGG | 0.376336 | 1.4:-81687424 | None:intergenic |
TTTGAACCACCTCCTTTGTA+TGG | 0.378733 | 1.4:-81689866 | None:intergenic |
TTTGGAACCTCTCATTATCT+TGG | 0.380577 | 1.4:-81689924 | None:intergenic |
TACAAAGGAGGTGGTTCAAA+TGG | 0.380666 | 1.4:+81689869 | MS.gene71577:CDS |
ATAGCTTCTATTGTTTCAAC+AGG | 0.383600 | 1.4:+81687366 | MS.gene71577:CDS |
TTGAAACTTGATCAAGAATC+TGG | 0.385536 | 1.4:+81687465 | MS.gene71577:CDS |
GTTAAATTGGTTCCACCAAT+TGG | 0.398637 | 1.4:-81689827 | None:intergenic |
CCCTTTGGAATGGTGATAGT+TGG | 0.405591 | 1.4:+81689677 | MS.gene71577:CDS |
ATGCTACTCCTTTGTCTGCA+TGG | 0.429367 | 1.4:-81689621 | None:intergenic |
AAGGAGTAGCATTTCCTAGA+TGG | 0.432572 | 1.4:+81689632 | MS.gene71577:CDS |
TATGACCTTATGCAGGTTCA+TGG | 0.436603 | 1.4:+81689567 | MS.gene71577:intron |
GAGTTTCTTGGAAACGTCTC+CGG | 0.437604 | 1.4:+81688591 | MS.gene71577:CDS |
CAAACAAATATTTATGCAGA+TGG | 0.437953 | 1.4:+81688630 | MS.gene71577:CDS |
TCCATACTTATTCTGTCTTG+TGG | 0.438586 | 1.4:+81688706 | MS.gene71577:CDS |
GAGCAGCAAGTTCTACCAAT+TGG | 0.458468 | 1.4:+81689812 | MS.gene71577:CDS |
CCTTTGGAATGGTGATAGTT+GGG | 0.462412 | 1.4:+81689678 | MS.gene71577:CDS |
TGAGTCTAAAAGCAACCCTT+TGG | 0.463123 | 1.4:+81689662 | MS.gene71577:CDS |
TGATTCTGCAGGCACAGTAC+TGG | 0.464803 | 1.4:+81688429 | MS.gene71577:CDS |
GTGGCCAAGATAAAATTGAT+TGG | 0.468420 | 1.4:+81689710 | MS.gene71577:CDS |
TCAGATGTGTTTACATGATT+GGG | 0.485733 | 1.4:-81687423 | None:intergenic |
GGAGGTGGTTCAAATGGGTT+AGG | 0.486220 | 1.4:+81689875 | MS.gene71577:CDS |
TTGGGAAGAGAACATTCCTT+AGG | 0.494262 | 1.4:-81689955 | None:intergenic |
ATAAGTATGGAAATCCTTTG+TGG | 0.509761 | 1.4:-81688694 | None:intergenic |
TTGATGCTTGTGTGTGGAAA+GGG | 0.510701 | 1.4:+81689773 | MS.gene71577:CDS |
GTGTGTGGAAAGGGAACCCT+AGG | 0.513814 | 1.4:+81689782 | MS.gene71577:CDS |
TTGAAGAATATATGGCTGTC+CGG | 0.519438 | 1.4:-81688610 | None:intergenic |
CAATAGAGATGAAATAGACT+TGG | 0.525633 | 1.4:+81688569 | MS.gene71577:CDS |
TAAGTATGGAAATCCTTTGT+GGG | 0.528332 | 1.4:-81688693 | None:intergenic |
ACAAAGGAGGTGGTTCAAAT+GGG | 0.532504 | 1.4:+81689870 | MS.gene71577:CDS |
CCCAACTATCACCATTCCAA+AGG | 0.544491 | 1.4:-81689678 | None:intergenic |
GATTCGACAATCGAGAAGAA+AGG | 0.549850 | 1.4:+81688652 | MS.gene71577:CDS |
CCAACTATCACCATTCCAAA+GGG | 0.550525 | 1.4:-81689677 | None:intergenic |
GTTCCAAAACAATCTTCCTA+AGG | 0.553708 | 1.4:+81689939 | MS.gene71577:CDS |
ATCCCCTGTGGTCAATACTT+GGG | 0.563999 | 1.4:-81689973 | None:intergenic |
TGAAGCATGAAACAAAATTG+AGG | 0.567578 | 1.4:-81687343 | None:intergenic |
CTTGCTGCTCTACAAAACCT+AGG | 0.578310 | 1.4:-81689799 | None:intergenic |
CTAGTACCAGGTGATTCTGC+AGG | 0.582195 | 1.4:+81688418 | MS.gene71577:CDS |
CAGCAAGTTCTACCAATTGG+TGG | 0.587858 | 1.4:+81689815 | MS.gene71577:CDS |
ATTGATGCTTGTGTGTGGAA+AGG | 0.589595 | 1.4:+81689772 | MS.gene71577:CDS |
TTTCTGAATGAAGCTATGAA+AGG | 0.593929 | 1.4:-81689742 | None:intergenic |
CTAAAAGCAACCCTTTGGAA+TGG | 0.600409 | 1.4:+81689667 | MS.gene71577:CDS |
GGCAATAGTCATAAATCATG+TGG | 0.604719 | 1.4:-81689903 | None:intergenic |
ATAAAATTGATGCTTGTGTG+TGG | 0.605204 | 1.4:+81689767 | MS.gene71577:CDS |
GATAGTTGGGCAACAAGAGG+TGG | 0.606924 | 1.4:+81689691 | MS.gene71577:CDS |
TAACATCCATACAAAGGAGG+TGG | 0.618108 | 1.4:+81689860 | MS.gene71577:CDS |
TATAGAAACCATGCAGACAA+AGG | 0.619279 | 1.4:+81689613 | MS.gene71577:CDS |
TTGCTGCTCTACAAAACCTA+GGG | 0.625384 | 1.4:-81689798 | None:intergenic |
ATGCAAATCAAACTAGTACC+AGG | 0.627832 | 1.4:+81688406 | MS.gene71577:CDS |
GAGAAGAAAGGATTTATCTG+TGG | 0.628619 | 1.4:+81688664 | MS.gene71577:CDS |
GGTGATAGTTGGGCAACAAG+AGG | 0.640344 | 1.4:+81689688 | MS.gene71577:CDS |
ACTATTGCCAAGATAATGAG+AGG | 0.647421 | 1.4:+81689917 | MS.gene71577:CDS |
CATGTAAACACATCTGACGA+TGG | 0.655900 | 1.4:+81687429 | MS.gene71577:CDS |
GCTCACTAACATCCATACAA+AGG | 0.659041 | 1.4:+81689854 | MS.gene71577:CDS |
TCTGTGGTTCGATCCCACAA+AGG | 0.668683 | 1.4:+81688680 | MS.gene71577:CDS |
ACTGTGCCTGCAGAATCACC+TGG | 0.669587 | 1.4:-81688424 | None:intergenic |
CACTAACATCCATACAAAGG+AGG | 0.669864 | 1.4:+81689857 | MS.gene71577:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACAGAAAATAAAAGTAAA+TGG | - | chr1.4:81688474-81688493 | None:intergenic | 15.0% |
!! | AAATAAAAAAATTACACATG+TGG | - | chr1.4:81687780-81687799 | None:intergenic | 15.0% |
!! | ATATTTGTTTGAAGAATATA+TGG | - | chr1.4:81688621-81688640 | None:intergenic | 15.0% |
!! | ATTCATTATTCATCTATTAT+TGG | - | chr1.4:81689034-81689053 | None:intergenic | 15.0% |
!! | ATTTGAAAATGTTATCAATT+TGG | + | chr1.4:81689274-81689293 | MS.gene71577:intron | 15.0% |
!! | CATATTTATATATACAAAGA+AGG | + | chr1.4:81689215-81689234 | MS.gene71577:intron | 15.0% |
!! | TATTATATTAGAGATAAAGT+TGG | - | chr1.4:81689135-81689154 | None:intergenic | 15.0% |
!! | TTAAGCCTTAAAATTATTAT+CGG | + | chr1.4:81688027-81688046 | MS.gene71577:intron | 15.0% |
!! | TTTATCTCTAATATAATATG+TGG | + | chr1.4:81689137-81689156 | MS.gene71577:intron | 15.0% |
!!! | AAAATCGAATTATTTTAGTT+AGG | + | chr1.4:81687958-81687977 | MS.gene71577:intron | 15.0% |
!!! | AAATCGAATTATTTTAGTTA+GGG | + | chr1.4:81687959-81687978 | MS.gene71577:intron | 15.0% |
!!! | AAATTAAAATCTGCATTTTT+TGG | - | chr1.4:81688144-81688163 | None:intergenic | 15.0% |
!!! | GAAATATATGATTTTATATG+AGG | - | chr1.4:81689384-81689403 | None:intergenic | 15.0% |
!!! | TAACTAAAATAATTCGATTT+TGG | - | chr1.4:81687959-81687978 | None:intergenic | 15.0% |
!!! | TTAAACCTAATTTTAAAAAG+TGG | - | chr1.4:81687624-81687643 | None:intergenic | 15.0% |
!!! | TTTTATTTTCTGTTTGTTTT+TGG | + | chr1.4:81688479-81688498 | MS.gene71577:intron | 15.0% |
!! | AAAAAAAAAAATTACACACG+CGG | + | chr1.4:81687860-81687879 | MS.gene71577:intron | 20.0% |
!! | GATAAAATTGATTGGAAAAA+TGG | + | chr1.4:81689718-81689737 | MS.gene71577:CDS | 20.0% |
!! | TAACTAAAATAATTCGATCT+TGG | + | chr1.4:81687692-81687711 | MS.gene71577:intron | 20.0% |
!! | TCATTTCTTAATTATGAGTT+TGG | + | chr1.4:81688321-81688340 | MS.gene71577:intron | 20.0% |
!! | TGTATAGAATCAAATCAATT+TGG | + | chr1.4:81688516-81688535 | MS.gene71577:intron | 20.0% |
!! | TTTGTCCAAATAAAAACATT+TGG | - | chr1.4:81688381-81688400 | None:intergenic | 20.0% |
!!! | AAGATCGAATTATTTTAGTT+AGG | - | chr1.4:81687693-81687712 | None:intergenic | 20.0% |
!!! | AATCGAATTATTTTAGTTAG+GGG | + | chr1.4:81687960-81687979 | MS.gene71577:intron | 20.0% |
!!! | AGATCGAATTATTTTAGTTA+GGG | - | chr1.4:81687692-81687711 | None:intergenic | 20.0% |
!!! | AGTTTTCTAAATAAGATACA+TGG | + | chr1.4:81689526-81689545 | MS.gene71577:intron | 20.0% |
!!! | ATCTTATTTAGAAAACTTGA+TGG | - | chr1.4:81689523-81689542 | None:intergenic | 20.0% |
!!! | TATAAATATGTGCATTGATT+TGG | - | chr1.4:81689205-81689224 | None:intergenic | 20.0% |
!!! | TTGTTCCACTTTTTAAAATT+AGG | + | chr1.4:81687616-81687635 | MS.gene71577:intron | 20.0% |
!!! | TTTTCCAATCAATTTTATCT+TGG | - | chr1.4:81689717-81689736 | None:intergenic | 20.0% |
!!! | TTTTCTTAGTCATTTTCATA+TGG | - | chr1.4:81689083-81689102 | None:intergenic | 20.0% |
! | AACAAATTAAACAAGTGCAT+AGG | - | chr1.4:81688981-81689000 | None:intergenic | 25.0% |
! | AAGTCTATTTCATCTCTATT+GGG | - | chr1.4:81688570-81688589 | None:intergenic | 25.0% |
! | AATCTCTGTAATTACTATCA+GGG | - | chr1.4:81689451-81689470 | None:intergenic | 25.0% |
! | ACAAAACTTATCTTCTTCTT+TGG | + | chr1.4:81687312-81687331 | MS.gene71577:CDS | 25.0% |
! | ACAAATTAAACAAGTGCATA+GGG | - | chr1.4:81688980-81688999 | None:intergenic | 25.0% |
! | AGTCTATAAATTGTTGAAGT+AGG | - | chr1.4:81688831-81688850 | None:intergenic | 25.0% |
! | AGTTTATGAATTGTTGAAGT+AGG | + | chr1.4:81688879-81688898 | MS.gene71577:intron | 25.0% |
! | CAAAACTTATCTTCTTCTTT+GGG | + | chr1.4:81687313-81687332 | MS.gene71577:CDS | 25.0% |
! | CAAACAAATATTTATGCAGA+TGG | + | chr1.4:81688630-81688649 | MS.gene71577:CDS | 25.0% |
! | TGAAAATGACTAAGAAAACA+AGG | + | chr1.4:81689085-81689104 | MS.gene71577:intron | 25.0% |
! | TTAGTGAGCTAAAGTTAAAT+TGG | - | chr1.4:81689843-81689862 | None:intergenic | 25.0% |
! | TTGAATGTAATGACATGTAT+CGG | - | chr1.4:81687596-81687615 | None:intergenic | 25.0% |
!! | AAGTTGGTTAATAGTTAGTT+AGG | - | chr1.4:81689119-81689138 | None:intergenic | 25.0% |
!! | ATTAGGTTTAATAGCAGTTT+TGG | + | chr1.4:81687633-81687652 | MS.gene71577:intron | 25.0% |
!! | TGACACCGATAATAATTTTA+AGG | - | chr1.4:81688035-81688054 | None:intergenic | 25.0% |
!!! | AAATGTTATCAATTTGGTGT+TGG | + | chr1.4:81689280-81689299 | MS.gene71577:intron | 25.0% |
!!! | AATGTTATCAATTTGGTGTT+GGG | + | chr1.4:81689281-81689300 | MS.gene71577:intron | 25.0% |
!!! | ATCGAATTATTTTAGTTAGG+GGG | + | chr1.4:81687961-81687980 | MS.gene71577:intron | 25.0% |
!!! | ATCGAATTATTTTAGTTAGG+GGG | - | chr1.4:81687980-81687961 | None:intergenic | 25.0% |
!!! | GATCGAATTATTTTAGTTAG+GGG | - | chr1.4:81687691-81687710 | None:intergenic | 25.0% |
!!! | TCGAACCAAATGTTTTTATT+TGG | + | chr1.4:81688373-81688392 | MS.gene71577:CDS | 25.0% |
AAGAGATTTCTTACACAATC+TGG | - | chr1.4:81688740-81688759 | None:intergenic | 30.0% | |
ATAAAATTGATGCTTGTGTG+TGG | + | chr1.4:81689767-81689786 | MS.gene71577:CDS | 30.0% | |
ATAACAATATGACCTTATGC+AGG | + | chr1.4:81689560-81689579 | MS.gene71577:intron | 30.0% | |
ATAAGGACTTCTTTGTGATA+TGG | + | chr1.4:81687397-81687416 | MS.gene71577:CDS | 30.0% | |
ATAAGTATGGAAATCCTTTG+TGG | - | chr1.4:81688697-81688716 | None:intergenic | 30.0% | |
ATAGCTTCTATTGTTTCAAC+AGG | + | chr1.4:81687366-81687385 | MS.gene71577:CDS | 30.0% | |
CAAGTCTATTTCATCTCTAT+TGG | - | chr1.4:81688571-81688590 | None:intergenic | 30.0% | |
CAATAGAGATGAAATAGACT+TGG | + | chr1.4:81688569-81688588 | MS.gene71577:CDS | 30.0% | |
GAAATGAATACACTTCTAAG+AGG | - | chr1.4:81688308-81688327 | None:intergenic | 30.0% | |
GAATCTCTGTAATTACTATC+AGG | - | chr1.4:81689452-81689471 | None:intergenic | 30.0% | |
GGCAATGTCTTATACAAAAA+CGG | - | chr1.4:81688287-81688306 | None:intergenic | 30.0% | |
GTTGAAGTAGGAGAAAATTT+GGG | + | chr1.4:81688891-81688910 | MS.gene71577:intron | 30.0% | |
TAAGTATGGAAATCCTTTGT+GGG | - | chr1.4:81688696-81688715 | None:intergenic | 30.0% | |
TCAGATGTGTTTACATGATT+GGG | - | chr1.4:81687426-81687445 | None:intergenic | 30.0% | |
TGAAGCATGAAACAAAATTG+AGG | - | chr1.4:81687346-81687365 | None:intergenic | 30.0% | |
TGGTCAAGTTATCACTAAAT+GGG | - | chr1.4:81689014-81689033 | None:intergenic | 30.0% | |
TGGTTTCTATACACTCTTAT+AGG | - | chr1.4:81689604-81689623 | None:intergenic | 30.0% | |
TGTTGAAGTAGGAGAAAATT+TGG | + | chr1.4:81688890-81688909 | MS.gene71577:intron | 30.0% | |
TTGAAACTTGATCAAGAATC+TGG | + | chr1.4:81687465-81687484 | MS.gene71577:CDS | 30.0% | |
TTGGTCAAGTTATCACTAAA+TGG | - | chr1.4:81689015-81689034 | None:intergenic | 30.0% | |
TTTCTGAATGAAGCTATGAA+AGG | - | chr1.4:81689745-81689764 | None:intergenic | 30.0% | |
! | ATTCCTTAGGAAGATTGTTT+TGG | - | chr1.4:81689945-81689964 | None:intergenic | 30.0% |
! | CATAGTTGTTGATAAGTAGT+TGG | - | chr1.4:81688778-81688797 | None:intergenic | 30.0% |
! | GTTTCAAAAAGTTGCGATTT+TGG | - | chr1.4:81687987-81688006 | None:intergenic | 30.0% |
! | TTAAGGCTTAATAGCAGTTT+TGG | - | chr1.4:81688018-81688037 | None:intergenic | 30.0% |
!! | AAGTGTTGGTACTTAGATAT+TGG | - | chr1.4:81687543-81687562 | None:intergenic | 30.0% |
!! | AGAAGAAGATAAGTTTTGTG+TGG | - | chr1.4:81687311-81687330 | None:intergenic | 30.0% |
!!! | ATCGCAACTTTTTGAAACAT+AGG | + | chr1.4:81687989-81688008 | MS.gene71577:intron | 30.0% |
!!! | TCGCAACTTTTTGAAACATA+GGG | + | chr1.4:81687990-81688009 | MS.gene71577:intron | 30.0% |
AAAAGACTCCAGTTATACAC+GGG | + | chr1.4:81689056-81689075 | MS.gene71577:intron | 35.0% | |
ACTATTGCCAAGATAATGAG+AGG | + | chr1.4:81689917-81689936 | MS.gene71577:CDS | 35.0% | |
ACTGTCTGATCTTGATTGTA+TGG | + | chr1.4:81688117-81688136 | MS.gene71577:intron | 35.0% | |
AGTTTGGATTATTGCTTTGC+AGG | + | chr1.4:81688337-81688356 | MS.gene71577:intron | 35.0% | |
ATCGCAACTTCTGTAAACAA+AGG | - | chr1.4:81687662-81687681 | None:intergenic | 35.0% | |
ATGCAAATCAAACTAGTACC+AGG | + | chr1.4:81688406-81688425 | MS.gene71577:CDS | 35.0% | |
CAAAAGACTCCAGTTATACA+CGG | + | chr1.4:81689055-81689074 | MS.gene71577:intron | 35.0% | |
GAAATAGACTTGGAGTTTCT+TGG | + | chr1.4:81688579-81688598 | MS.gene71577:CDS | 35.0% | |
GAGAAGAAAGGATTTATCTG+TGG | + | chr1.4:81688664-81688683 | MS.gene71577:CDS | 35.0% | |
GGCAATAGTCATAAATCATG+TGG | - | chr1.4:81689906-81689925 | None:intergenic | 35.0% | |
GTACCAACACTTTAGATCAA+AGG | + | chr1.4:81687551-81687570 | MS.gene71577:intron | 35.0% | |
GTCAGATGTGTTTACATGAT+TGG | - | chr1.4:81687427-81687446 | None:intergenic | 35.0% | |
GTGGCCAAGATAAAATTGAT+TGG | + | chr1.4:81689710-81689729 | MS.gene71577:CDS | 35.0% | |
GTTCCAAAACAATCTTCCTA+AGG | + | chr1.4:81689939-81689958 | MS.gene71577:CDS | 35.0% | |
GTTGAAGTAGGAGAAAGTTT+GGG | - | chr1.4:81688819-81688838 | None:intergenic | 35.0% | |
GTTTGGATTATTGCTTTGCA+GGG | + | chr1.4:81688338-81688357 | MS.gene71577:intron | 35.0% | |
TACAAAGAAGGTTGAGAAGT+TGG | + | chr1.4:81689227-81689246 | MS.gene71577:intron | 35.0% | |
TATAGAAACCATGCAGACAA+AGG | + | chr1.4:81689613-81689632 | MS.gene71577:CDS | 35.0% | |
TCCACAAGACAGAATAAGTA+TGG | - | chr1.4:81688710-81688729 | None:intergenic | 35.0% | |
TCCATACTTATTCTGTCTTG+TGG | + | chr1.4:81688706-81688725 | MS.gene71577:CDS | 35.0% | |
TCGCAACTTCTGTAAACAAA+GGG | - | chr1.4:81687661-81687680 | None:intergenic | 35.0% | |
TCTGTAATTACTATCAGGGT+GGG | - | chr1.4:81689447-81689466 | None:intergenic | 35.0% | |
TCTTATACAAAAACGGACAC+CGG | - | chr1.4:81688280-81688299 | None:intergenic | 35.0% | |
TGTTGAAGTAGGAGAAAGTT+TGG | - | chr1.4:81688820-81688839 | None:intergenic | 35.0% | |
TGTTGGTACTTAGATATTGG+AGG | - | chr1.4:81687540-81687559 | None:intergenic | 35.0% | |
TTCAACAGGTGACTTCAATA+AGG | + | chr1.4:81687380-81687399 | MS.gene71577:CDS | 35.0% | |
TTGAAGAATATATGGCTGTC+CGG | - | chr1.4:81688613-81688632 | None:intergenic | 35.0% | |
TTTGGATTATTGCTTTGCAG+GGG | + | chr1.4:81688339-81688358 | MS.gene71577:intron | 35.0% | |
! | AAAATGCCAAAAGTGCAAAG+GGG | - | chr1.4:81687733-81687752 | None:intergenic | 35.0% |
! | CAAAATGCCAAAAGTGCAAA+GGG | - | chr1.4:81687734-81687753 | None:intergenic | 35.0% |
! | GTTAAATTGGTTCCACCAAT+TGG | - | chr1.4:81689830-81689849 | None:intergenic | 35.0% |
! | TCAAAATGCCAAAAGTGCAA+AGG | - | chr1.4:81687735-81687754 | None:intergenic | 35.0% |
! | TTTGGAACCTCTCATTATCT+TGG | - | chr1.4:81689927-81689946 | None:intergenic | 35.0% |
!! | AGCATTGACTTGGTCAAAAT+TGG | + | chr1.4:81687892-81687911 | MS.gene71577:intron | 35.0% |
!! | GTTGTGATTAGTCTTGTAGA+AGG | + | chr1.4:81689412-81689431 | MS.gene71577:intron | 35.0% |
!!! | CGCAACTTTTTGAAACATAG+GGG | + | chr1.4:81687991-81688010 | MS.gene71577:intron | 35.0% |
!!! | GCAACTTTTTGAAACATAGG+GGG | + | chr1.4:81687992-81688011 | MS.gene71577:intron | 35.0% |
AAGGAGTAGCATTTCCTAGA+TGG | + | chr1.4:81689632-81689651 | MS.gene71577:CDS | 40.0% | |
ACAAAGGAGGTGGTTCAAAT+GGG | + | chr1.4:81689870-81689889 | MS.gene71577:CDS | 40.0% | |
AGATGGATGAGATTCAAGCT+CGG | - | chr1.4:81688181-81688200 | None:intergenic | 40.0% | |
ATTGATGCTTGTGTGTGGAA+AGG | + | chr1.4:81689772-81689791 | MS.gene71577:CDS | 40.0% | |
CAACACTTTAGATCAAAGGC+GGG | + | chr1.4:81687555-81687574 | MS.gene71577:intron | 40.0% | |
CACTAACATCCATACAAAGG+AGG | + | chr1.4:81689857-81689876 | MS.gene71577:CDS | 40.0% | |
CATGTAAACACATCTGACGA+TGG | + | chr1.4:81687429-81687448 | MS.gene71577:CDS | 40.0% | |
CCAACACTTTAGATCAAAGG+CGG | + | chr1.4:81687554-81687573 | MS.gene71577:intron | 40.0% | |
CCAACTATCACCATTCCAAA+GGG | - | chr1.4:81689680-81689699 | None:intergenic | 40.0% | |
CCAGGAATTTGAATTCACAC+TGG | - | chr1.4:81688061-81688080 | None:intergenic | 40.0% | |
CCAGTGTGAATTCAAATTCC+TGG | + | chr1.4:81688058-81688077 | MS.gene71577:intron | 40.0% | |
CGCAACTTCTGTAAACAAAG+GGG | - | chr1.4:81687660-81687679 | None:intergenic | 40.0% | |
CTCTGTAATTACTATCAGGG+TGG | - | chr1.4:81689448-81689467 | None:intergenic | 40.0% | |
GATCGTGCATTCACACATTT+AGG | + | chr1.4:81688085-81688104 | MS.gene71577:intron | 40.0% | |
GATTCGACAATCGAGAAGAA+AGG | + | chr1.4:81688652-81688671 | MS.gene71577:CDS | 40.0% | |
GCAACTTCTGTAAACAAAGG+GGG | - | chr1.4:81687659-81687678 | None:intergenic | 40.0% | |
GCTCACTAACATCCATACAA+AGG | + | chr1.4:81689854-81689873 | MS.gene71577:CDS | 40.0% | |
GTGAATTCAAATTCCTGGCA+GGG | + | chr1.4:81688063-81688082 | MS.gene71577:intron | 40.0% | |
TAACATCCATACAAAGGAGG+TGG | + | chr1.4:81689860-81689879 | MS.gene71577:CDS | 40.0% | |
TACAAAGGAGGTGGTTCAAA+TGG | + | chr1.4:81689869-81689888 | MS.gene71577:CDS | 40.0% | |
TATGACCTTATGCAGGTTCA+TGG | + | chr1.4:81689567-81689586 | MS.gene71577:intron | 40.0% | |
TGAGTCTAAAAGCAACCCTT+TGG | + | chr1.4:81689662-81689681 | MS.gene71577:CDS | 40.0% | |
TGCAAAGGAGGCAAAACATA+GGG | + | chr1.4:81687931-81687950 | MS.gene71577:intron | 40.0% | |
TGTGAATTCAAATTCCTGGC+AGG | + | chr1.4:81688062-81688081 | MS.gene71577:intron | 40.0% | |
TTGATGCTTGTGTGTGGAAA+GGG | + | chr1.4:81689773-81689792 | MS.gene71577:CDS | 40.0% | |
TTGCTGCTCTACAAAACCTA+GGG | - | chr1.4:81689801-81689820 | None:intergenic | 40.0% | |
TTGGGAAGAGAACATTCCTT+AGG | - | chr1.4:81689958-81689977 | None:intergenic | 40.0% | |
TTTGAACCACCTCCTTTGTA+TGG | - | chr1.4:81689869-81689888 | None:intergenic | 40.0% | |
! | AAATGCCAAAAGTGCAAAGG+GGG | - | chr1.4:81687732-81687751 | None:intergenic | 40.0% |
! | ACTTGGTCAAAATTGGCCTA+AGG | + | chr1.4:81687899-81687918 | MS.gene71577:intron | 40.0% |
! | ATGTATCGGTATCAGTGTCA+CGG | - | chr1.4:81687582-81687601 | None:intergenic | 40.0% |
! | CATAGTTGTTGATGAGTAGC+TGG | + | chr1.4:81688932-81688951 | MS.gene71577:intron | 40.0% |
! | CTAAAAGCAACCCTTTGGAA+TGG | + | chr1.4:81689667-81689686 | MS.gene71577:CDS | 40.0% |
! | CTTGGTCAAAATTGGCCTAA+GGG | + | chr1.4:81687900-81687919 | MS.gene71577:intron | 40.0% |
! | TTGGTCAAAATTGGCCTAAG+GGG | + | chr1.4:81687901-81687920 | MS.gene71577:intron | 40.0% |
! | TTTTGCCTCCTTTGCACTTT+TGG | - | chr1.4:81687927-81687946 | None:intergenic | 40.0% |
!! | CCTTTGGAATGGTGATAGTT+GGG | + | chr1.4:81689678-81689697 | MS.gene71577:CDS | 40.0% |
!!! | AGGGTTGCTTTTAGACTCAT+TGG | - | chr1.4:81689661-81689680 | None:intergenic | 40.0% |
AAGGTTGAGAAGTTGGACGT+TGG | + | chr1.4:81689234-81689253 | MS.gene71577:intron | 45.0% | |
ATACAAAAACGGACACCGGA+TGG | - | chr1.4:81688276-81688295 | None:intergenic | 45.0% | |
ATCGACCATGAACCTGCATA+AGG | - | chr1.4:81689575-81689594 | None:intergenic | 45.0% | |
ATGCTACTCCTTTGTCTGCA+TGG | - | chr1.4:81689624-81689643 | None:intergenic | 45.0% | |
ATTCGCGCAATTGGGACATT+GGG | - | chr1.4:81688222-81688241 | None:intergenic | 45.0% | |
CAAAGGAGGCAAAACATAGG+GGG | + | chr1.4:81687933-81687952 | MS.gene71577:intron | 45.0% | |
CAGCAAGTTCTACCAATTGG+TGG | + | chr1.4:81689815-81689834 | MS.gene71577:CDS | 45.0% | |
CATATGGACCCGTGTATAAC+TGG | - | chr1.4:81689067-81689086 | None:intergenic | 45.0% | |
CCCAACTATCACCATTCCAA+AGG | - | chr1.4:81689681-81689700 | None:intergenic | 45.0% | |
CTTGCTGCTCTACAAAACCT+AGG | - | chr1.4:81689802-81689821 | None:intergenic | 45.0% | |
GAGCAGCAAGTTCTACCAAT+TGG | + | chr1.4:81689812-81689831 | MS.gene71577:CDS | 45.0% | |
GAGTTTCTTGGAAACGTCTC+CGG | + | chr1.4:81688591-81688610 | MS.gene71577:CDS | 45.0% | |
GCAAAGGAGGCAAAACATAG+GGG | + | chr1.4:81687932-81687951 | MS.gene71577:intron | 45.0% | |
GTGCAAAGGAGGCAAAACAT+AGG | + | chr1.4:81687930-81687949 | MS.gene71577:intron | 45.0% | |
TCCATCTGATCCTGATCAAG+TGG | + | chr1.4:81688194-81688213 | MS.gene71577:intron | 45.0% | |
TCTCTTGACTGCAAGAGATC+CGG | + | chr1.4:81688248-81688267 | MS.gene71577:intron | 45.0% | |
TGACCAAGTCAATGCTGATG+TGG | - | chr1.4:81687888-81687907 | None:intergenic | 45.0% | |
TGCAAAGGGGGCAAAACATA+GGG | - | chr1.4:81687720-81687739 | None:intergenic | 45.0% | |
TTGAGAAGTTGGACGTTGGT+AGG | + | chr1.4:81689238-81689257 | MS.gene71577:intron | 45.0% | |
! | AGACTCATTGGTTGCCATCT+AGG | - | chr1.4:81689649-81689668 | None:intergenic | 45.0% |
! | CCGCCTTTGATCTAAAGTGT+TGG | - | chr1.4:81687557-81687576 | None:intergenic | 45.0% |
! | TTTTGCCCCCTTTGCACTTT+TGG | + | chr1.4:81687724-81687743 | MS.gene71577:intron | 45.0% |
!! | CCCTTTGGAATGGTGATAGT+TGG | + | chr1.4:81689677-81689696 | MS.gene71577:CDS | 45.0% |
AGATCCTGCATTCGCGCAAT+TGG | - | chr1.4:81688231-81688250 | None:intergenic | 50.0% | |
CAAAGGGGGCAAAACATAGG+GGG | - | chr1.4:81687718-81687737 | None:intergenic | 50.0% | |
CATTCGCGCAATTGGGACAT+TGG | - | chr1.4:81688223-81688242 | None:intergenic | 50.0% | |
CTAGTACCAGGTGATTCTGC+AGG | + | chr1.4:81688418-81688437 | MS.gene71577:CDS | 50.0% | |
GATAGTTGGGCAACAAGAGG+TGG | + | chr1.4:81689691-81689710 | MS.gene71577:CDS | 50.0% | |
GATCCTGCATTCGCGCAATT+GGG | - | chr1.4:81688230-81688249 | None:intergenic | 50.0% | |
GATTATTGCTTTGCAGGGGC+TGG | + | chr1.4:81688343-81688362 | MS.gene71577:intron | 50.0% | |
GCAAAGGGGGCAAAACATAG+GGG | - | chr1.4:81687719-81687738 | None:intergenic | 50.0% | |
GCCACTTGATCAGGATCAGA+TGG | - | chr1.4:81688198-81688217 | None:intergenic | 50.0% | |
GGTGATAGTTGGGCAACAAG+AGG | + | chr1.4:81689688-81689707 | MS.gene71577:CDS | 50.0% | |
GTGCAAAGGGGGCAAAACAT+AGG | - | chr1.4:81687721-81687740 | None:intergenic | 50.0% | |
TCTGTGGTTCGATCCCACAA+AGG | + | chr1.4:81688680-81688699 | MS.gene71577:CDS | 50.0% | |
TGACCAAGTCAATGCTGACG+TGG | + | chr1.4:81687752-81687771 | MS.gene71577:intron | 50.0% | |
TGATTCTGCAGGCACAGTAC+TGG | + | chr1.4:81688429-81688448 | MS.gene71577:CDS | 50.0% | |
TTCGCGCAATTGGGACATTG+GGG | - | chr1.4:81688221-81688240 | None:intergenic | 50.0% | |
! | CTAAGGGGCCAAAAGTGCAA+AGG | + | chr1.4:81687916-81687935 | MS.gene71577:intron | 50.0% |
! | CTTTGCACTTTTGGCCCCTT+AGG | - | chr1.4:81687918-81687937 | None:intergenic | 50.0% |
! | GGAGGTGGTTCAAATGGGTT+AGG | + | chr1.4:81689875-81689894 | MS.gene71577:CDS | 50.0% |
ACATTGGGGGCCACTTGATC+AGG | - | chr1.4:81688207-81688226 | None:intergenic | 55.0% | |
ACTGTGCCTGCAGAATCACC+TGG | - | chr1.4:81688427-81688446 | None:intergenic | 55.0% | |
GTGTGTGGAAAGGGAACCCT+AGG | + | chr1.4:81689782-81689801 | MS.gene71577:CDS | 55.0% | |
TCGCGCAATTGGGACATTGG+GGG | - | chr1.4:81688220-81688239 | None:intergenic | 55.0% | |
TGTCCCAATTGCGCGAATGC+AGG | + | chr1.4:81688224-81688243 | MS.gene71577:intron | 55.0% | |
! | AGGGGCCAAAAGTGCAAAGG+AGG | + | chr1.4:81687919-81687938 | MS.gene71577:intron | 55.0% |
!! | GCGCCACATCAGCATTGACT+TGG | + | chr1.4:81687882-81687901 | MS.gene71577:intron | 55.0% |
AAACGGACACCGGATGGAGC+CGG | - | chr1.4:81688270-81688289 | None:intergenic | 60.0% | |
GCAAGAGATCCGGCTCCATC+CGG | + | chr1.4:81688258-81688277 | MS.gene71577:intron | 60.0% | |
GTGAATGCACGATCCCTGCC+AGG | - | chr1.4:81688079-81688098 | None:intergenic | 60.0% | |
!! | GCGCCACGTCAGCATTGACT+TGG | - | chr1.4:81687758-81687777 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 81687297 | 81689984 | 81687297 | ID=MS.gene71577 |
chr1.4 | mRNA | 81687297 | 81689984 | 81687297 | ID=MS.gene71577.t1;Parent=MS.gene71577 |
chr1.4 | exon | 81687297 | 81687486 | 81687297 | ID=MS.gene71577.t1.exon1;Parent=MS.gene71577.t1 |
chr1.4 | CDS | 81687297 | 81687486 | 81687297 | ID=cds.MS.gene71577.t1;Parent=MS.gene71577.t1 |
chr1.4 | exon | 81688359 | 81688459 | 81688359 | ID=MS.gene71577.t1.exon2;Parent=MS.gene71577.t1 |
chr1.4 | CDS | 81688359 | 81688459 | 81688359 | ID=cds.MS.gene71577.t1;Parent=MS.gene71577.t1 |
chr1.4 | exon | 81688552 | 81688745 | 81688552 | ID=MS.gene71577.t1.exon3;Parent=MS.gene71577.t1 |
chr1.4 | CDS | 81688552 | 81688745 | 81688552 | ID=cds.MS.gene71577.t1;Parent=MS.gene71577.t1 |
chr1.4 | exon | 81689582 | 81689984 | 81689582 | ID=MS.gene71577.t1.exon4;Parent=MS.gene71577.t1 |
chr1.4 | CDS | 81689582 | 81689984 | 81689582 | ID=cds.MS.gene71577.t1;Parent=MS.gene71577.t1 |
Gene Sequence |
Protein sequence |