AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007553

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007553.t1 MTR_7g102260 98.582 282 4 0 1 282 12 293 0.0 583
MS.gene007553.t1 MTR_1g063020 84.752 282 43 0 1 282 15 296 0.0 515
MS.gene007553.t1 MTR_4g057450 73.022 278 75 0 3 280 27 304 4.34e-155 434
MS.gene007553.t1 MTR_2g095800 67.260 281 91 1 1 280 29 309 1.82e-141 400
MS.gene007553.t1 MTR_1g033420 41.948 267 145 4 21 280 28 291 1.57e-66 210
MS.gene007553.t1 MTR_8g064180 39.175 291 156 6 5 280 26 310 1.82e-64 204
MS.gene007553.t1 MTR_1g105900 39.326 267 143 8 25 280 33 291 2.89e-60 193
MS.gene007553.t1 MTR_5g029100 40.891 247 133 3 44 280 62 305 2.94e-60 195
MS.gene007553.t1 MTR_3g084630 41.667 264 137 6 23 280 25 277 2.94e-60 193
MS.gene007553.t1 MTR_7g093530 40.000 265 142 6 25 280 23 279 3.00e-60 193
MS.gene007553.t1 MTR_3g084620 41.667 264 137 6 23 280 25 277 3.14e-60 193
MS.gene007553.t1 MTR_4g128570 39.925 268 136 7 19 280 24 272 7.29e-60 191
MS.gene007553.t1 MTR_8g081040 40.458 262 140 6 25 280 30 281 1.09e-59 191
MS.gene007553.t1 MTR_4g128410 39.623 265 143 7 25 280 24 280 7.89e-59 189
MS.gene007553.t1 MTR_4g128580 39.568 278 147 6 16 280 16 285 2.43e-58 188
MS.gene007553.t1 MTR_3g089540 40.840 262 141 5 25 280 29 282 4.95e-58 187
MS.gene007553.t1 MTR_4g128400 39.623 265 143 6 25 280 27 283 1.01e-57 186
MS.gene007553.t1 MTR_4g126920 39.474 266 143 6 25 280 24 281 1.06e-57 186
MS.gene007553.t1 MTR_7g084770 37.410 278 146 7 10 280 31 287 1.18e-57 186
MS.gene007553.t1 MTR_6g088320 38.806 268 145 7 25 281 25 284 2.06e-57 186
MS.gene007553.t1 MTR_7g084760 37.410 278 146 7 10 280 31 287 2.15e-57 186
MS.gene007553.t1 MTR_2g038860 38.697 261 139 5 25 272 25 277 6.16e-57 185
MS.gene007553.t1 MTR_2g038705 38.697 261 139 5 25 272 25 277 6.16e-57 185
MS.gene007553.t1 MTR_5g091730 39.695 262 142 7 25 280 27 278 7.28e-57 184
MS.gene007553.t1 MTR_5g029100 40.678 236 127 3 55 280 42 274 1.26e-56 184
MS.gene007553.t1 MTR_7g084750 37.121 264 149 7 26 280 32 287 8.21e-56 182
MS.gene007553.t1 MTR_8g102220 37.828 267 127 7 25 280 28 266 1.14e-55 181
MS.gene007553.t1 MTR_2g089140 35.816 282 153 6 14 280 18 286 2.65e-55 180
MS.gene007553.t1 MTR_8g090100 39.630 270 139 8 26 280 21 281 2.85e-55 181
MS.gene007553.t1 MTR_4g045853 37.037 270 142 6 18 272 24 280 5.55e-55 179
MS.gene007553.t1 MTR_8g102910 38.806 268 145 7 25 281 21 280 2.65e-54 177
MS.gene007553.t1 MTR_6g033085 38.843 242 133 6 46 280 54 287 2.74e-54 178
MS.gene007553.t1 MTR_6g033055 38.430 242 134 6 46 280 54 287 1.36e-53 176
MS.gene007553.t1 MTR_1g105495 36.900 271 144 8 26 280 35 294 4.39e-53 175
MS.gene007553.t1 MTR_7g056090 38.889 270 144 9 19 280 25 281 1.85e-51 170
MS.gene007553.t1 MTR_4g097640 37.079 267 145 8 26 280 32 287 3.98e-50 167
MS.gene007553.t1 MTR_4g097670 37.079 267 145 8 26 280 32 287 3.98e-50 167
MS.gene007553.t1 MTR_4g097700 37.079 267 145 8 26 280 69 324 4.68e-50 168
MS.gene007553.t1 MTR_8g013055 37.165 261 144 6 22 272 27 277 4.00e-49 164
MS.gene007553.t1 MTR_2g089140 37.118 229 121 5 67 280 3 223 2.00e-48 160
MS.gene007553.t1 MTR_4g128590 35.145 276 141 8 19 280 24 275 3.15e-48 162
MS.gene007553.t1 MTR_2g049030 33.585 265 148 11 26 280 30 276 1.19e-39 139
MS.gene007553.t1 MTR_2g049130 32.453 265 157 10 26 282 29 279 1.26e-39 139
MS.gene007553.t1 MTR_8g032640 33.702 181 103 6 44 220 31 198 1.06e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007553.t1 AT2G36870 84.173 278 44 0 4 281 21 298 0.0 502
MS.gene007553.t1 AT3G44990 67.407 270 88 0 11 280 24 293 2.97e-135 384
MS.gene007553.t1 AT2G36870 88.608 158 18 0 4 161 21 178 8.22e-104 300
MS.gene007553.t1 AT4G14130 43.657 268 129 7 25 280 27 284 3.46e-68 213
MS.gene007553.t1 AT1G10550 36.429 280 156 4 18 280 35 309 8.76e-65 205
MS.gene007553.t1 AT1G32170 42.086 278 141 7 18 280 21 293 3.37e-64 205
MS.gene007553.t1 AT1G14720 40.959 271 145 6 20 280 25 290 2.38e-63 202
MS.gene007553.t1 AT3G23730 40.590 271 140 7 23 280 24 286 1.30e-62 199
MS.gene007553.t1 AT5G57550 41.107 253 136 5 25 272 29 273 6.82e-62 197
MS.gene007553.t1 AT5G57560 40.942 276 131 9 23 280 20 281 8.73e-61 194
MS.gene007553.t1 AT2G01850 39.015 264 150 4 25 280 30 290 6.17e-60 194
MS.gene007553.t1 AT5G57530 41.509 265 136 8 26 280 27 282 1.18e-59 191
MS.gene007553.t1 AT4G25810 41.697 271 135 9 23 280 23 283 5.91e-59 189
MS.gene007553.t1 AT5G65730 38.951 267 142 7 25 280 34 290 6.69e-58 187
MS.gene007553.t1 AT4G25820 42.857 266 133 9 25 280 29 285 1.55e-57 186
MS.gene007553.t1 AT5G48070 39.925 268 135 8 25 280 28 281 2.11e-57 186
MS.gene007553.t1 AT4G18990 40.000 260 130 5 42 280 58 312 4.03e-57 187
MS.gene007553.t1 AT5G57540 41.132 265 137 9 26 280 26 281 7.81e-57 184
MS.gene007553.t1 AT4G30270 41.107 253 124 8 34 280 32 265 3.35e-56 182
MS.gene007553.t1 AT4G30290 42.537 268 128 8 25 280 23 276 5.18e-56 182
MS.gene007553.t1 AT1G11545 38.267 277 140 8 23 280 35 299 7.72e-56 182
MS.gene007553.t1 AT2G18800 37.500 280 141 9 25 280 27 296 2.60e-55 181
MS.gene007553.t1 AT4G30280 44.255 235 108 7 55 280 61 281 3.85e-55 180
MS.gene007553.t1 AT1G65310 45.259 232 110 8 55 280 61 281 3.98e-55 180
MS.gene007553.t1 AT1G65310 45.259 232 110 8 55 280 83 303 4.93e-55 180
MS.gene007553.t1 AT3G25050 35.075 268 158 6 22 281 31 290 2.18e-54 178
MS.gene007553.t1 AT2G06850 39.130 276 145 9 17 280 26 290 2.44e-54 178
MS.gene007553.t1 AT4G13090 39.179 268 145 5 23 280 29 288 5.10e-54 177
MS.gene007553.t1 AT2G14620 36.131 274 156 8 18 280 29 294 8.64e-54 177
MS.gene007553.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene007553.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene007553.t1 AT5G13870 39.496 238 129 6 50 280 58 287 8.98e-54 176
MS.gene007553.t1 AT4G13080 38.023 263 145 7 26 280 39 291 1.54e-52 173
MS.gene007553.t1 AT4G37800 38.636 264 145 6 26 280 34 289 1.90e-52 173
MS.gene007553.t1 AT4G03210 35.741 263 138 5 26 272 29 276 4.32e-52 172
MS.gene007553.t1 AT2G06850 41.102 236 120 7 54 280 5 230 7.81e-52 170
MS.gene007553.t1 AT4G03210 37.402 254 127 6 42 280 20 256 1.82e-50 167
MS.gene007553.t1 AT2G14620 36.179 246 140 7 44 280 7 244 2.62e-49 164
MS.gene007553.t1 AT4G28850 34.926 272 157 8 21 280 24 287 6.39e-49 164
MS.gene007553.t1 AT2G14620 37.168 226 125 7 64 280 16 233 4.51e-46 155
MS.gene007553.t1 AT4G18990 40.092 217 104 5 85 280 27 238 9.47e-44 150
MS.gene007553.t1 AT3G48580 34.766 256 134 10 34 280 42 273 1.07e-38 137
MS.gene007553.t1 AT3G48580 33.906 233 126 8 54 280 4 214 1.40e-35 127
MS.gene007553.t1 AT3G48580 30.859 256 124 11 34 280 42 253 8.28e-24 97.4

Find 77 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAAATGCATTAACTATT+TGG 0.118568 7.1:+9159486 MS.gene007553:CDS
ATTAGACCAATGTGGCTTTA+TGG 0.169563 7.1:+9161209 MS.gene007553:CDS
GATTAAACTCACAACAAAAT+AGG 0.178606 7.1:+9161399 MS.gene007553:CDS
TAAAGCCACATTGGTCTAAT+TGG 0.229363 7.1:-9161206 None:intergenic
GTGACTTACATTATCTCTTT+AGG 0.271288 7.1:-9160157 None:intergenic
TGTGGCTTTATGGTTCAATA+TGG 0.272583 7.1:+9161219 MS.gene007553:CDS
TTCCTCGGGTACCTCCTTAT+TGG 0.277629 7.1:-9161167 None:intergenic
TTTATTTAACCCCAACATTC+AGG 0.280498 7.1:-9161497 None:intergenic
GAGAAATGAAGTTTCATCTT+TGG 0.298153 7.1:+9160089 MS.gene007553:CDS
ATAACCAGGTTGAAGCTTAA+TGG 0.307755 7.1:-9159674 None:intergenic
GGCCACCTTCACCAGGCTAT+TGG 0.328340 7.1:+9159387 MS.gene007553:CDS
CAGACCAATGTTTATGTAAG+AGG 0.355685 7.1:+9160040 MS.gene007553:CDS
GAGTTTCTTGGAACAACATT+TGG 0.363278 7.1:+9160001 MS.gene007553:CDS
ACATTGGTCTGCAAAGTATA+AGG 0.365369 7.1:-9160028 None:intergenic
TAGACTAACACCTGAATGTT+GGG 0.377909 7.1:+9161487 MS.gene007553:CDS
TCAGCATCACCATATGGTTC+TGG 0.382882 7.1:+9161374 MS.gene007553:CDS
AACAGGAAGTGGATTTAAAT+CGG 0.399827 7.1:+9159618 MS.gene007553:intron
TCGGTTCGTCCGTTTCGATC+TGG 0.399991 7.1:+9159637 MS.gene007553:CDS
GTTGTAGTCTTTGGTGTTGA+GGG 0.401069 7.1:-9159466 None:intergenic
CCATATGGTGATGCTGAAAC+TGG 0.403239 7.1:-9161368 None:intergenic
CCAGTTTCAGCATCACCATA+TGG 0.414819 7.1:+9161368 MS.gene007553:CDS
CCGTTTCGATCTGGCTACTT+TGG 0.417395 7.1:+9159646 MS.gene007553:CDS
TTGTGGATGATGTGCCAATA+AGG 0.417399 7.1:+9161153 MS.gene007553:CDS
ACAAAATAGGGCTATGAGTT+GGG 0.435041 7.1:+9161412 MS.gene007553:CDS
TACAATAATTATAAACCATA+TGG 0.435446 7.1:-9161445 None:intergenic
ATTAAACTCACAACAAAATA+GGG 0.447861 7.1:+9161400 MS.gene007553:CDS
AATGTTGTGTCACTCTTCCT+CGG 0.449121 7.1:-9161182 None:intergenic
GAAGTGGACATTGAGTTTCT+TGG 0.452892 7.1:+9159989 MS.gene007553:CDS
ATTTGGCTTGATAGAACCTC+AGG 0.462755 7.1:+9159503 MS.gene007553:CDS
AGTGGTGATGGGAAAATTGT+AGG 0.464266 7.1:+9160064 MS.gene007553:CDS
TTTGAACTTGGCCAATAGCC+TGG 0.471985 7.1:-9159398 None:intergenic
TTTGTATATTGTGCAACAAA+TGG 0.475210 7.1:-9161299 None:intergenic
TTGGGTGCAAAGATACCATA+TGG 0.479888 7.1:+9161430 MS.gene007553:CDS
TCATCATGGGCAACAGAAGA+TGG 0.483074 7.1:+9161248 MS.gene007553:CDS
ATGTAAGAGGGAGTGGTGAT+GGG 0.484590 7.1:+9160053 MS.gene007553:CDS
AGCATAGTGATGAAAACCTT+TGG 0.487107 7.1:-9160122 None:intergenic
AACAAAATAGGGCTATGAGT+TGG 0.487818 7.1:+9161411 MS.gene007553:CDS
TATGTAAGAGGGAGTGGTGA+TGG 0.502994 7.1:+9160052 MS.gene007553:CDS
TGTTGTAGTCTTTGGTGTTG+AGG 0.517034 7.1:-9159467 None:intergenic
GCTTATTGGCCACCTTCACC+AGG 0.519429 7.1:+9159380 MS.gene007553:CDS
CAATATGGGATGCTTCATCA+TGG 0.519985 7.1:+9161234 MS.gene007553:CDS
AATGTTTATGTAAGAGGGAG+TGG 0.522067 7.1:+9160046 MS.gene007553:CDS
TTTAATCCACCAGAACCATA+TGG 0.527099 7.1:-9161383 None:intergenic
ATTATGTGTCAGATTTCTTG+TGG 0.531400 7.1:+9161136 MS.gene007553:intron
CTTCAACCTGGTTATACTGC+AGG 0.532390 7.1:+9159682 MS.gene007553:CDS
ATAGACTTGAACTTTGAACT+TGG 0.535880 7.1:-9159410 None:intergenic
CCAAAGTAGCCAGATCGAAA+CGG 0.537510 7.1:-9159646 None:intergenic
CTTTGGTTTGATCCTACCAA+AGG 0.537930 7.1:+9160106 MS.gene007553:CDS
ATGTTGTGTCACTCTTCCTC+GGG 0.544493 7.1:-9161181 None:intergenic
GTGGCTTTATGGTTCAATAT+GGG 0.546084 7.1:+9161220 MS.gene007553:CDS
GCATCACCATATGGTTCTGG+TGG 0.546443 7.1:+9161377 MS.gene007553:CDS
TTCATCACTATGCTATACTC+TGG 0.555533 7.1:+9160131 MS.gene007553:CDS
ATAGACTAACACCTGAATGT+TGG 0.555533 7.1:+9161486 MS.gene007553:CDS
TATACAAATTTCAAAGCTAG+TGG 0.558654 7.1:+9161314 MS.gene007553:CDS
TTTGGTGTTGAGGGCCCCAA+CGG 0.560236 7.1:-9159457 None:intergenic
TCAAACAATGAAGCACATCC+TGG 0.560307 7.1:+9159956 MS.gene007553:CDS
AGACCAATGTTTATGTAAGA+GGG 0.563206 7.1:+9160041 MS.gene007553:CDS
GGCCAATAGCCTGGTGAAGG+TGG 0.575508 7.1:-9159389 None:intergenic
TCCACTTCATCATGGTAACC+AGG 0.575746 7.1:-9159974 None:intergenic
ACTCAATGTCCACTTCATCA+TGG 0.586098 7.1:-9159982 None:intergenic
ATGGCACCAACGAGGTGCAT+AGG 0.588771 7.1:-9161345 None:intergenic
TCCTGGTTACCATGATGAAG+TGG 0.598344 7.1:+9159973 MS.gene007553:CDS
TATATTGTGCAACAAATGGT+TGG 0.600462 7.1:-9161295 None:intergenic
GCACAGCCTATGCACCTCGT+TGG 0.605322 7.1:+9161339 MS.gene007553:CDS
TAGTGATGAAAACCTTTGGT+AGG 0.607983 7.1:-9160118 None:intergenic
GCTTCCATTAAGCTTCAACC+TGG 0.609226 7.1:+9159670 MS.gene007553:CDS
AATATGGGATGCTTCATCAT+GGG 0.615655 7.1:+9161235 MS.gene007553:CDS
ATTGAACCATAAAGCCACAT+TGG 0.615958 7.1:-9161215 None:intergenic
ACTCCCTCTTACATAAACAT+TGG 0.616456 7.1:-9160044 None:intergenic
ATAACTCCTGCAGTATAACC+AGG 0.626048 7.1:-9159688 None:intergenic
CATTTCCAATTAGACCAATG+TGG 0.641551 7.1:+9161201 MS.gene007553:CDS
TGCCAATAAGGAGGTACCCG+AGG 0.657088 7.1:+9161165 MS.gene007553:CDS
AGACTAACACCTGAATGTTG+GGG 0.661530 7.1:+9161488 MS.gene007553:CDS
ATGGTGATGCTGAAACTGGA+TGG 0.663075 7.1:-9161364 None:intergenic
CTTGGCCAATAGCCTGGTGA+AGG 0.674426 7.1:-9159392 None:intergenic
TGGATGATGTGCCAATAAGG+AGG 0.722240 7.1:+9161156 MS.gene007553:CDS
GAAACTGGATGGCACCAACG+AGG 0.789191 7.1:-9161353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATGATTGAATTAT+TGG + chr7.1:9159927-9159946 MS.gene007553:intron 10.0%
!! TACTAATAATTAATTAATCT+AGG - chr7.1:9160242-9160261 None:intergenic 10.0%
!!! AGAAAATAATATTTTTTTAG+AGG - chr7.1:9160801-9160820 None:intergenic 10.0%
!!! TAATAATCTAAAATAGTATA+GGG + chr7.1:9160260-9160279 MS.gene007553:intron 10.0%
!!! TATTATTTTCTAAGAAATAA+AGG + chr7.1:9160810-9160829 MS.gene007553:intron 10.0%
!! TACAATAATTATAAACCATA+TGG - chr7.1:9161448-9161467 None:intergenic 15.0%
!!! GTAATAATCTAAAATAGTAT+AGG + chr7.1:9160259-9160278 MS.gene007553:intron 15.0%
!!! TATTGTCATTGTTTTTTTTA+TGG + chr7.1:9159590-9159609 MS.gene007553:intron 15.0%
!!! TGATATTTTGGAATTTTTTA+AGG + chr7.1:9160739-9160758 MS.gene007553:intron 15.0%
!!! TTTTTTTTATGGTAAAAAAC+AGG + chr7.1:9159601-9159620 MS.gene007553:intron 15.0%
!! AAATCGAATGGTTTATATTA+AGG - chr7.1:9160545-9160564 None:intergenic 20.0%
!! AACAAAATGCATTAACTATT+TGG + chr7.1:9159486-9159505 MS.gene007553:CDS 20.0%
!! ATTAAACTCACAACAAAATA+GGG + chr7.1:9161400-9161419 MS.gene007553:CDS 20.0%
!! CATATAGAAATACTAAATCA+AGG + chr7.1:9160879-9160898 MS.gene007553:intron 20.0%
!! TTATATTAAGGTCAACAAAT+CGG - chr7.1:9160533-9160552 None:intergenic 20.0%
!!! ACATAAGATTTTTTTAACCA+TGG + chr7.1:9160441-9160460 MS.gene007553:intron 20.0%
!!! TTCTTAACTTTTCATTAGTT+GGG - chr7.1:9160972-9160991 None:intergenic 20.0%
!!! TTTCTTAACTTTTCATTAGT+TGG - chr7.1:9160973-9160992 None:intergenic 20.0%
! AAAATCATAACATAGAAGTG+TGG + chr7.1:9160918-9160937 MS.gene007553:intron 25.0%
! ATCAATTGGTATCAAAGTTT+AGG + chr7.1:9160706-9160725 MS.gene007553:intron 25.0%
! ATGAAAAGTTAAGAAAGTGA+CGG + chr7.1:9160977-9160996 MS.gene007553:intron 25.0%
! GATTAAACTCACAACAAAAT+AGG + chr7.1:9161399-9161418 MS.gene007553:CDS 25.0%
! TATACAAATTTCAAAGCTAG+TGG + chr7.1:9161314-9161333 MS.gene007553:CDS 25.0%
! TTCTAACCATTGATATAGAT+CGG + chr7.1:9160497-9160516 MS.gene007553:intron 25.0%
! TTTGTATATTGTGCAACAAA+TGG - chr7.1:9161302-9161321 None:intergenic 25.0%
!! AAACCATTCGATTTTATCAA+TGG + chr7.1:9160551-9160570 MS.gene007553:intron 25.0%
!! AAATCATAACATAGAAGTGT+GGG + chr7.1:9160919-9160938 MS.gene007553:intron 25.0%
!! AACCATTCGATTTTATCAAT+GGG + chr7.1:9160552-9160571 MS.gene007553:intron 25.0%
!! AAGTCTATGAACTTTTACAA+AGG + chr7.1:9159425-9159444 MS.gene007553:CDS 25.0%
!! TTAGTCTATGATCTCTTTTT+GGG - chr7.1:9161475-9161494 None:intergenic 25.0%
!! TTCTAAGAAATAAAGGAAGA+AGG + chr7.1:9160817-9160836 MS.gene007553:intron 25.0%
!! TTGATTGGTTCTTTATCAAT+TGG + chr7.1:9160692-9160711 MS.gene007553:intron 25.0%
!!! AGATTTTTTTAACCATGGTT+TGG + chr7.1:9160446-9160465 MS.gene007553:intron 25.0%
!!! TTTTGGAATTTTTTAAGGAG+TGG + chr7.1:9160744-9160763 MS.gene007553:intron 25.0%
AACCCATTGATAAAATCGAA+TGG - chr7.1:9160557-9160576 None:intergenic 30.0%
AGACCAATGTTTATGTAAGA+GGG + chr7.1:9160041-9160060 MS.gene007553:CDS 30.0%
ATAAAGGAAGAAGGCAAATA+AGG + chr7.1:9160826-9160845 MS.gene007553:intron 30.0%
ATAGACTTGAACTTTGAACT+TGG - chr7.1:9159413-9159432 None:intergenic 30.0%
ATTATGTGTCAGATTTCTTG+TGG + chr7.1:9161136-9161155 MS.gene007553:intron 30.0%
CAAACATTCATAAAGTTCAC+TGG + chr7.1:9159844-9159863 MS.gene007553:intron 30.0%
CATTGTCCAATCTTAATCAA+TGG - chr7.1:9160392-9160411 None:intergenic 30.0%
GAGAAATGAAGTTTCATCTT+TGG + chr7.1:9160089-9160108 MS.gene007553:CDS 30.0%
GTGACTTACATTATCTCTTT+AGG - chr7.1:9160160-9160179 None:intergenic 30.0%
TAGCTAACTATAGTGATTCT+TGG + chr7.1:9160581-9160600 MS.gene007553:intron 30.0%
TATATTGTGCAACAAATGGT+TGG - chr7.1:9161298-9161317 None:intergenic 30.0%
TTATGGTAAAAAACAGGAAG+TGG + chr7.1:9159607-9159626 MS.gene007553:intron 30.0%
! AACAGGAAGTGGATTTAAAT+CGG + chr7.1:9159618-9159637 MS.gene007553:intron 30.0%
! AATCATAACATAGAAGTGTG+GGG + chr7.1:9160920-9160939 MS.gene007553:intron 30.0%
! ATTCGATTTTATCAATGGGT+TGG + chr7.1:9160556-9160575 MS.gene007553:intron 30.0%
! CATTGATTAAGATTGGACAA+TGG + chr7.1:9160390-9160409 MS.gene007553:intron 30.0%
! GGCAAGACTTAATGATATTT+TGG + chr7.1:9160727-9160746 MS.gene007553:intron 30.0%
! TAGAGAAAACTACATTTTCG+AGG - chr7.1:9159808-9159827 None:intergenic 30.0%
! TCTCTTTTGATGAGGTATAT+AGG + chr7.1:9160307-9160326 MS.gene007553:intron 30.0%
!! ATGCATTTTGTTGTAGTCTT+TGG - chr7.1:9159478-9159497 None:intergenic 30.0%
!! CATTTTCAAGCAATGCTTAT+TGG + chr7.1:9159366-9159385 MS.gene007553:CDS 30.0%
!! GTTAGTCTATGATCTCTTTT+TGG - chr7.1:9161476-9161495 None:intergenic 30.0%
AACAAAATAGGGCTATGAGT+TGG + chr7.1:9161411-9161430 MS.gene007553:CDS 35.0%
AATATGGGATGCTTCATCAT+GGG + chr7.1:9161235-9161254 MS.gene007553:CDS 35.0%
AATGTTTATGTAAGAGGGAG+TGG + chr7.1:9160046-9160065 MS.gene007553:CDS 35.0%
ACAAAATAGGGCTATGAGTT+GGG + chr7.1:9161412-9161431 MS.gene007553:CDS 35.0%
ACTCCCTCTTACATAAACAT+TGG - chr7.1:9160047-9160066 None:intergenic 35.0%
AGCATAGTGATGAAAACCTT+TGG - chr7.1:9160125-9160144 None:intergenic 35.0%
ATAGACTAACACCTGAATGT+TGG + chr7.1:9161486-9161505 MS.gene007553:CDS 35.0%
ATATAGGTGTGATAGGGAAA+TGG + chr7.1:9160323-9160342 MS.gene007553:intron 35.0%
ATGAGGTATATAGGTGTGAT+AGG + chr7.1:9160316-9160335 MS.gene007553:intron 35.0%
ATTGAACCATAAAGCCACAT+TGG - chr7.1:9161218-9161237 None:intergenic 35.0%
CAGACCAATGTTTATGTAAG+AGG + chr7.1:9160040-9160059 MS.gene007553:CDS 35.0%
CATTTCCAATTAGACCAATG+TGG + chr7.1:9161201-9161220 MS.gene007553:CDS 35.0%
CTAAATCAAGGTCACATGAA+TGG + chr7.1:9160891-9160910 MS.gene007553:intron 35.0%
GACTATCCGATCTATATCAA+TGG - chr7.1:9160506-9160525 None:intergenic 35.0%
GAGTTTCTTGGAACAACATT+TGG + chr7.1:9160001-9160020 MS.gene007553:CDS 35.0%
TAGACTAACACCTGAATGTT+GGG + chr7.1:9161487-9161506 MS.gene007553:CDS 35.0%
TAGTGATGAAAACCTTTGGT+AGG - chr7.1:9160121-9160140 None:intergenic 35.0%
TGAGGTATATAGGTGTGATA+GGG + chr7.1:9160317-9160336 MS.gene007553:intron 35.0%
TGTCCAATCTTAATCAATGG+TGG - chr7.1:9160389-9160408 None:intergenic 35.0%
TTCATCACTATGCTATACTC+TGG + chr7.1:9160131-9160150 MS.gene007553:CDS 35.0%
TTCATGAAACTAAGTGCCAA+TGG - chr7.1:9159757-9159776 None:intergenic 35.0%
TTTAAGGAGTGGAAAATGAG+AGG + chr7.1:9160755-9160774 MS.gene007553:intron 35.0%
TTTAATCCACCAGAACCATA+TGG - chr7.1:9161386-9161405 None:intergenic 35.0%
TTTCACATTCAGAGACATTG+AGG - chr7.1:9160207-9160226 None:intergenic 35.0%
! AAAGGTTTTACAAACCGTTG+GGG + chr7.1:9159443-9159462 MS.gene007553:CDS 35.0%
! AATAGTATAGGGTACTAGAC+AGG + chr7.1:9160271-9160290 MS.gene007553:intron 35.0%
! ACAAAGGTTTTACAAACCGT+TGG + chr7.1:9159441-9159460 MS.gene007553:CDS 35.0%
! ACATTGGTCTGCAAAGTATA+AGG - chr7.1:9160031-9160050 None:intergenic 35.0%
! ATAACCAGGTTGAAGCTTAA+TGG - chr7.1:9159677-9159696 None:intergenic 35.0%
! ATTAGACCAATGTGGCTTTA+TGG + chr7.1:9161209-9161228 MS.gene007553:CDS 35.0%
! CAAAGGTTTTACAAACCGTT+GGG + chr7.1:9159442-9159461 MS.gene007553:CDS 35.0%
! CACTACTTTCTCTTTTGATG+AGG + chr7.1:9160299-9160318 MS.gene007553:intron 35.0%
! TAAAGCCACATTGGTCTAAT+TGG - chr7.1:9161209-9161228 None:intergenic 35.0%
! TCTCCACCATTGATTAAGAT+TGG + chr7.1:9160383-9160402 MS.gene007553:intron 35.0%
!! GTGGCTTTATGGTTCAATAT+GGG + chr7.1:9161220-9161239 MS.gene007553:CDS 35.0%
!! TGTGGCTTTATGGTTCAATA+TGG + chr7.1:9161219-9161238 MS.gene007553:CDS 35.0%
!! TTTTAACCATGGTTTGGACT+TGG + chr7.1:9160452-9160471 MS.gene007553:intron 35.0%
AAGGCAAATAAGGATGTGAC+AGG + chr7.1:9160836-9160855 MS.gene007553:intron 40.0%
ACTCAATGTCCACTTCATCA+TGG - chr7.1:9159985-9160004 None:intergenic 40.0%
AGACTAACACCTGAATGTTG+GGG + chr7.1:9161488-9161507 MS.gene007553:CDS 40.0%
AGAGAATCCACAATTGAGCT+TGG + chr7.1:9160648-9160667 MS.gene007553:intron 40.0%
ATAACTCCTGCAGTATAACC+AGG - chr7.1:9159691-9159710 None:intergenic 40.0%
ATTGAGCTTGGATTCTGCTT+AGG + chr7.1:9160660-9160679 MS.gene007553:intron 40.0%
CAATATGGGATGCTTCATCA+TGG + chr7.1:9161234-9161253 MS.gene007553:CDS 40.0%
CATGACATGCATGTTTCCAT+TGG + chr7.1:9159738-9159757 MS.gene007553:intron 40.0%
CTTAGGTGGCATTGTTTGAT+TGG + chr7.1:9160677-9160696 MS.gene007553:intron 40.0%
GAAGTGGACATTGAGTTTCT+TGG + chr7.1:9159989-9160008 MS.gene007553:CDS 40.0%
TAATCACCAAGTCCAAACCA+TGG - chr7.1:9160461-9160480 None:intergenic 40.0%
TCAAACAATGAAGCACATCC+TGG + chr7.1:9159956-9159975 MS.gene007553:CDS 40.0%
TTGGGTGCAAAGATACCATA+TGG + chr7.1:9161430-9161449 MS.gene007553:CDS 40.0%
TTGTGGATGATGTGCCAATA+AGG + chr7.1:9161153-9161172 MS.gene007553:CDS 40.0%
! AATGTTGTGTCACTCTTCCT+CGG - chr7.1:9161185-9161204 None:intergenic 40.0%
!! AGTGGTGATGGGAAAATTGT+AGG + chr7.1:9160064-9160083 MS.gene007553:CDS 40.0%
!! ATTTGGCTTGATAGAACCTC+AGG + chr7.1:9159503-9159522 MS.gene007553:CDS 40.0%
!! CTTTGGTTTGATCCTACCAA+AGG + chr7.1:9160106-9160125 MS.gene007553:CDS 40.0%
!! GTTGTAGTCTTTGGTGTTGA+GGG - chr7.1:9159469-9159488 None:intergenic 40.0%
!! TGTTGTAGTCTTTGGTGTTG+AGG - chr7.1:9159470-9159489 None:intergenic 40.0%
ATGATCAGACTCAGAACCTG+AGG - chr7.1:9159522-9159541 None:intergenic 45.0%
ATGTAAGAGGGAGTGGTGAT+GGG + chr7.1:9160053-9160072 MS.gene007553:CDS 45.0%
CCAAAGTAGCCAGATCGAAA+CGG - chr7.1:9159649-9159668 None:intergenic 45.0%
CCAGTTTCAGCATCACCATA+TGG + chr7.1:9161368-9161387 MS.gene007553:CDS 45.0%
CTTCAACCTGGTTATACTGC+AGG + chr7.1:9159682-9159701 MS.gene007553:CDS 45.0%
GCAGAATCCAAGCTCAATTG+TGG - chr7.1:9160658-9160677 None:intergenic 45.0%
GCTTCCATTAAGCTTCAACC+TGG + chr7.1:9159670-9159689 MS.gene007553:CDS 45.0%
TATGTAAGAGGGAGTGGTGA+TGG + chr7.1:9160052-9160071 MS.gene007553:CDS 45.0%
TCAGCATCACCATATGGTTC+TGG + chr7.1:9161374-9161393 MS.gene007553:CDS 45.0%
TCATCATGGGCAACAGAAGA+TGG + chr7.1:9161248-9161267 MS.gene007553:CDS 45.0%
TCCACTTCATCATGGTAACC+AGG - chr7.1:9159977-9159996 None:intergenic 45.0%
TCCTGGTTACCATGATGAAG+TGG + chr7.1:9159973-9159992 MS.gene007553:CDS 45.0%
TGGATGATGTGCCAATAAGG+AGG + chr7.1:9161156-9161175 MS.gene007553:CDS 45.0%
TTTGAACTTGGCCAATAGCC+TGG - chr7.1:9159401-9159420 None:intergenic 45.0%
! ATGGTGATGCTGAAACTGGA+TGG - chr7.1:9161367-9161386 None:intergenic 45.0%
! ATGTTGTGTCACTCTTCCTC+GGG - chr7.1:9161184-9161203 None:intergenic 45.0%
! CCATATGGTGATGCTGAAAC+TGG - chr7.1:9161371-9161390 None:intergenic 45.0%
CCGTTTCGATCTGGCTACTT+TGG + chr7.1:9159646-9159665 MS.gene007553:CDS 50.0%
GAGCTTGGATTCTGCTTAGG+TGG + chr7.1:9160663-9160682 MS.gene007553:intron 50.0%
GGTGGAGATCGTAACTGTAG+TGG - chr7.1:9160371-9160390 None:intergenic 50.0%
TTCCTCGGGTACCTCCTTAT+TGG - chr7.1:9161170-9161189 None:intergenic 50.0%
!! GCATCACCATATGGTTCTGG+TGG + chr7.1:9161377-9161396 MS.gene007553:CDS 50.0%
ATGGCACCAACGAGGTGCAT+AGG - chr7.1:9161348-9161367 None:intergenic 55.0%
CTTGGCCAATAGCCTGGTGA+AGG - chr7.1:9159395-9159414 None:intergenic 55.0%
GAAACTGGATGGCACCAACG+AGG - chr7.1:9161356-9161375 None:intergenic 55.0%
GCTTATTGGCCACCTTCACC+AGG + chr7.1:9159380-9159399 MS.gene007553:CDS 55.0%
! TCGGTTCGTCCGTTTCGATC+TGG + chr7.1:9159637-9159656 MS.gene007553:CDS 55.0%
!! TGCCAATAAGGAGGTACCCG+AGG + chr7.1:9161165-9161184 MS.gene007553:CDS 55.0%
!! TTTGGTGTTGAGGGCCCCAA+CGG - chr7.1:9159460-9159479 None:intergenic 55.0%
GCACAGCCTATGCACCTCGT+TGG + chr7.1:9161339-9161358 MS.gene007553:CDS 60.0%
GGCCAATAGCCTGGTGAAGG+TGG - chr7.1:9159392-9159411 None:intergenic 60.0%
GGCCACCTTCACCAGGCTAT+TGG + chr7.1:9159387-9159406 MS.gene007553:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 9159362 9161514 9159362 ID=MS.gene007553
chr7.1 mRNA 9159362 9161514 9159362 ID=MS.gene007553.t1;Parent=MS.gene007553
chr7.1 exon 9159362 9159524 9159362 ID=MS.gene007553.t1.exon1;Parent=MS.gene007553.t1
chr7.1 CDS 9159362 9159524 9159362 ID=cds.MS.gene007553.t1;Parent=MS.gene007553.t1
chr7.1 exon 9159623 9159723 9159623 ID=MS.gene007553.t1.exon2;Parent=MS.gene007553.t1
chr7.1 CDS 9159623 9159723 9159623 ID=cds.MS.gene007553.t1;Parent=MS.gene007553.t1
chr7.1 exon 9159953 9160170 9159953 ID=MS.gene007553.t1.exon3;Parent=MS.gene007553.t1
chr7.1 CDS 9159953 9160170 9159953 ID=cds.MS.gene007553.t1;Parent=MS.gene007553.t1
chr7.1 exon 9161148 9161514 9161148 ID=MS.gene007553.t1.exon4;Parent=MS.gene007553.t1
chr7.1 CDS 9161148 9161514 9161148 ID=cds.MS.gene007553.t1;Parent=MS.gene007553.t1
Gene Sequence

>MS.gene007553

ATGACATTTTCAAGCAATGCTTATTGGCCACCTTCACCAGGCTATTGGCCAAGTTCAAAGTTCAAGTCTATGAACTTTTACAAAGGTTTTACAAACCGTTGGGGCCCTCAACACCAAAGACTACAACAAAATGCATTAACTATTTGGCTTGATAGAACCTCAGGTTCTGAGTCTGATCATCAGTTACATAAGTTTTCTGCTTCTTGTTAAATATCATTGAAATTTAATTATTGTCATTGTTTTTTTTATGGTAAAAAACAGGAAGTGGATTTAAATCGGTTCGTCCGTTTCGATCTGGCTACTTTGGTGCTTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACATCTTTCTATGTAAGATGTTACAGCATGACATGCATGTTTCCATTGGCACTTAGTTTCATGAAATTACGATAACACTGTGATTTTGTTGAACCTCGAAAATGTAGTTTTCTCTAGAATTTACTGTCAATTCAAACATTCATAAAGTTCACTGGTTTGATTGTTATAGCTTATACATTTTGTTTAGATTGTTAATTACTATTAGCACTAATGATATAATTAATGATTGAATTATTGGCAGCTATCAAACAATGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTTGGAACAACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATGTAAGAGGGAGTGGTGATGGGAAAATTGTAGGTAGAGAAATGAAGTTTCATCTTTGGTTTGATCCTACCAAAGGTTTTCATCACTATGCTATACTCTGGAGTCCTAAAGAGATAATGTAAGTCACTGTATAATTTAATTATATCATATTCCTCAATGTCTCTGAATGTGAAATTGAATTGAATGCCTAGATTAATTAATTATTAGTAATAATCTAAAATAGTATAGGGTACTAGACAGGACATGCACTACTTTCTCTTTTGATGAGGTATATAGGTGTGATAGGGAAATGGACTTACATATGCACTCAATAGTCCACTACAGTTACGATCTCCACCATTGATTAAGATTGGACAATGGAGACTGATTGTTGAACTTATAATTGAACACATAAGATTTTTTTAACCATGGTTTGGACTTGGTGATTATAGTGACTCTTGAAAATTCTAACCATTGATATAGATCGGATAGTCGAGACCGATTTGTTGACCTTAATATAAACCATTCGATTTTATCAATGGGTTGGATTAGCTAACTATAGTGATTCTTGGAAATTATGAGAGCATGAAATCTGATTTGCAAGATAAAGAGATGAAGAGAATCCACAATTGAGCTTGGATTCTGCTTAGGTGGCATTGTTTGATTGGTTCTTTATCAATTGGTATCAAAGTTTAGGCAAGACTTAATGATATTTTGGAATTTTTTAAGGAGTGGAAAATGAGAGGATAACAACATAATTTTCTATCCTCTAAAAAAATATTATTTTCTAAGAAATAAAGGAAGAAGGCAAATAAGGATGTGACAGGATTAAAAATAGAAATCATATCATATAGAAATACTAAATCAAGGTCACATGAATGGCACAAAAATCATAACATAGAAGTGTGGGGAAACAAATATGATAAGCAGTGTAGCACCCAACTAATGAAAAGTTAAGAAAGTGACGGTAAATTTATTTTATTTATGAAAGATTAAAACTACTGTATATACTAATACTAGTAGTAACGTTCAAAAAGCTGTAGCTATTATATGAATCATAGAAATGATTATTAATACTATATAGTTGCTTTATACTGACATTAAATTATGTGTCAGATTTCTTGTGGATGATGTGCCAATAAGGAGGTACCCGAGGAAGAGTGACACAACATTTCCAATTAGACCAATGTGGCTTTATGGTTCAATATGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAGATACCAACCATTTGTTGCACAATATACAAATTTCAAAGCTAGTGGTTGCACAGCCTATGCACCTCGTTGGTGCCATCCAGTTTCAGCATCACCATATGGTTCTGGTGGATTAAACTCACAACAAAATAGGGCTATGAGTTGGGTGCAAAGATACCATATGGTTTATAATTATTGTAGAGACCCAAAAAGAGATCATAGACTAACACCTGAATGTTGGGGTTAA
Protein sequence

>MS.gene007553.t1

MTFSSNAYWPPSPGYWPSSKFKSMNFYKGFTNRWGPQHQRLQQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITSFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYVRGSGDGKIVGREMKFHLWFDPTKGFHHYAILWSPKEIIFLVDDVPIRRYPRKSDTTFPIRPMWLYGSIWDASSWATEDGKYKADYRYQPFVAQYTNFKASGCTAYAPRWCHPVSASPYGSGGLNSQQNRAMSWVQRYHMVYNYCRDPKRDHRLTPECWG