Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007674.t1 | XP_024636166.1 | 98.8 | 346 | 4 | 0 | 1 | 346 | 4 | 349 | 8.60E-181 | 642.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007674.t1 | F4IHS9 | 75.5 | 347 | 76 | 3 | 1 | 346 | 4 | 342 | 2.7e-135 | 483.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007674.t1 | A0A072ULS8 | 98.8 | 346 | 4 | 0 | 1 | 346 | 4 | 349 | 6.2e-181 | 642.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85927 | MS.gene007674 | PPI |
| MS.gene007674 | MS.gene53154 | PPI |
| MS.gene55353 | MS.gene007674 | PPI |
| MS.gene78610 | MS.gene007674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007674.t1 | MTR_4g058860 | 98.844 | 346 | 4 | 0 | 1 | 346 | 4 | 349 | 0.0 | 686 |
| MS.gene007674.t1 | MTR_2g094640 | 83.478 | 345 | 55 | 2 | 1 | 344 | 4 | 347 | 0.0 | 575 |
| MS.gene007674.t1 | MTR_3g094260 | 65.116 | 344 | 117 | 2 | 2 | 343 | 5 | 347 | 5.28e-151 | 429 |
| MS.gene007674.t1 | MTR_3g094270 | 66.462 | 325 | 108 | 1 | 2 | 326 | 5 | 328 | 3.21e-144 | 411 |
| MS.gene007674.t1 | MTR_1g026590 | 37.267 | 322 | 192 | 2 | 10 | 321 | 14 | 335 | 2.28e-57 | 189 |
| MS.gene007674.t1 | MTR_8g092190 | 34.954 | 329 | 206 | 5 | 9 | 331 | 15 | 341 | 4.06e-56 | 186 |
| MS.gene007674.t1 | MTR_1291s0010 | 81.481 | 108 | 20 | 0 | 1 | 108 | 4 | 111 | 2.48e-55 | 176 |
| MS.gene007674.t1 | MTR_3g095130 | 36.333 | 300 | 189 | 2 | 3 | 301 | 10 | 308 | 5.18e-55 | 183 |
| MS.gene007674.t1 | MTR_5g004620 | 39.203 | 301 | 178 | 3 | 3 | 299 | 9 | 308 | 2.35e-54 | 182 |
| MS.gene007674.t1 | MTR_1g098240 | 35.738 | 305 | 195 | 1 | 10 | 313 | 16 | 320 | 7.15e-53 | 177 |
| MS.gene007674.t1 | MTR_3g095130 | 36.797 | 231 | 145 | 1 | 72 | 301 | 29 | 259 | 1.42e-44 | 154 |
| MS.gene007674.t1 | MTR_2g038410 | 30.375 | 293 | 196 | 2 | 19 | 307 | 66 | 354 | 5.06e-35 | 132 |
| MS.gene007674.t1 | MTR_5g096310 | 29.530 | 298 | 202 | 2 | 7 | 300 | 55 | 348 | 7.65e-32 | 123 |
| MS.gene007674.t1 | MTR_1g030320 | 24.845 | 322 | 231 | 6 | 17 | 330 | 23 | 341 | 3.17e-22 | 96.3 |
| MS.gene007674.t1 | MTR_3g072380 | 25.478 | 314 | 223 | 5 | 19 | 325 | 26 | 335 | 6.80e-22 | 95.1 |
| MS.gene007674.t1 | MTR_0011s0320 | 26.590 | 346 | 215 | 14 | 19 | 345 | 25 | 350 | 6.77e-21 | 92.4 |
| MS.gene007674.t1 | MTR_3g107470 | 24.484 | 339 | 224 | 11 | 19 | 343 | 29 | 349 | 2.15e-17 | 82.4 |
| MS.gene007674.t1 | MTR_4g114360 | 26.377 | 345 | 210 | 15 | 19 | 343 | 25 | 345 | 2.74e-17 | 82.0 |
| MS.gene007674.t1 | MTR_7g110380 | 26.124 | 356 | 222 | 11 | 1 | 343 | 8 | 335 | 6.13e-17 | 81.3 |
| MS.gene007674.t1 | MTR_4g123900 | 26.346 | 353 | 225 | 13 | 1 | 331 | 4 | 343 | 1.11e-12 | 68.9 |
| MS.gene007674.t1 | MTR_0662s0010 | 28.358 | 268 | 157 | 14 | 19 | 266 | 25 | 277 | 1.23e-11 | 64.7 |
| MS.gene007674.t1 | MTR_3g070000 | 27.187 | 320 | 195 | 11 | 2 | 301 | 19 | 320 | 2.45e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007674.t1 | AT2G28315 | 75.504 | 347 | 76 | 3 | 1 | 346 | 4 | 342 | 0.0 | 515 |
| MS.gene007674.t1 | AT2G28315 | 82.392 | 301 | 53 | 0 | 1 | 301 | 4 | 304 | 0.0 | 504 |
| MS.gene007674.t1 | AT1G06890 | 65.429 | 350 | 111 | 3 | 3 | 343 | 6 | 354 | 4.83e-151 | 429 |
| MS.gene007674.t1 | AT1G06890 | 65.429 | 350 | 111 | 3 | 3 | 343 | 6 | 354 | 4.83e-151 | 429 |
| MS.gene007674.t1 | AT1G06890 | 68.827 | 324 | 100 | 1 | 3 | 326 | 6 | 328 | 1.40e-150 | 428 |
| MS.gene007674.t1 | AT1G06890 | 68.827 | 324 | 100 | 1 | 3 | 326 | 6 | 328 | 1.59e-150 | 427 |
| MS.gene007674.t1 | AT2G30460 | 65.517 | 348 | 110 | 3 | 3 | 343 | 6 | 350 | 2.73e-149 | 424 |
| MS.gene007674.t1 | AT2G30460 | 65.517 | 348 | 110 | 3 | 3 | 343 | 6 | 350 | 2.73e-149 | 424 |
| MS.gene007674.t1 | AT2G30460 | 61.677 | 334 | 114 | 5 | 18 | 343 | 2 | 329 | 3.65e-138 | 395 |
| MS.gene007674.t1 | AT2G30460 | 61.677 | 334 | 114 | 5 | 18 | 343 | 2 | 329 | 3.65e-138 | 395 |
| MS.gene007674.t1 | AT2G30460 | 61.677 | 334 | 114 | 5 | 18 | 343 | 2 | 329 | 3.65e-138 | 395 |
| MS.gene007674.t1 | AT2G30460 | 71.101 | 218 | 63 | 0 | 3 | 220 | 6 | 223 | 1.41e-97 | 293 |
| MS.gene007674.t1 | AT5G42420 | 38.291 | 316 | 191 | 2 | 2 | 315 | 9 | 322 | 1.53e-62 | 203 |
| MS.gene007674.t1 | AT1G21070 | 36.391 | 327 | 206 | 1 | 9 | 333 | 16 | 342 | 3.34e-61 | 199 |
| MS.gene007674.t1 | AT4G09810 | 37.255 | 306 | 190 | 2 | 10 | 313 | 16 | 321 | 9.44e-60 | 196 |
| MS.gene007674.t1 | AT4G39390 | 35.144 | 313 | 201 | 2 | 9 | 319 | 16 | 328 | 2.08e-58 | 192 |
| MS.gene007674.t1 | AT4G39390 | 35.144 | 313 | 201 | 2 | 9 | 319 | 20 | 332 | 2.69e-58 | 192 |
| MS.gene007674.t1 | AT4G39390 | 35.144 | 313 | 201 | 2 | 9 | 319 | 20 | 332 | 2.69e-58 | 192 |
| MS.gene007674.t1 | AT1G34020 | 35.404 | 322 | 199 | 3 | 15 | 334 | 21 | 335 | 4.00e-58 | 191 |
| MS.gene007674.t1 | AT1G34020 | 35.404 | 322 | 199 | 3 | 15 | 334 | 21 | 335 | 4.00e-58 | 191 |
| MS.gene007674.t1 | AT1G34020 | 35.404 | 322 | 199 | 3 | 15 | 334 | 21 | 335 | 4.00e-58 | 191 |
| MS.gene007674.t1 | AT1G76670 | 34.615 | 338 | 219 | 1 | 3 | 338 | 9 | 346 | 5.01e-58 | 191 |
| MS.gene007674.t1 | AT1G76670 | 34.615 | 338 | 219 | 1 | 3 | 338 | 9 | 346 | 5.01e-58 | 191 |
| MS.gene007674.t1 | AT4G09810 | 39.367 | 221 | 133 | 1 | 82 | 301 | 31 | 251 | 4.27e-49 | 166 |
| MS.gene007674.t1 | AT4G09810 | 37.681 | 207 | 129 | 0 | 10 | 216 | 16 | 222 | 1.01e-39 | 140 |
| MS.gene007674.t1 | AT5G57100 | 31.034 | 290 | 192 | 2 | 11 | 296 | 67 | 352 | 4.96e-38 | 140 |
| MS.gene007674.t1 | AT5G55950 | 29.856 | 278 | 187 | 2 | 19 | 292 | 68 | 341 | 9.26e-34 | 129 |
| MS.gene007674.t1 | AT5G55950 | 29.856 | 278 | 187 | 2 | 19 | 292 | 8 | 281 | 9.41e-34 | 127 |
| MS.gene007674.t1 | AT5G42420 | 29.904 | 311 | 148 | 5 | 2 | 310 | 9 | 251 | 1.47e-31 | 120 |
| MS.gene007674.t1 | AT5G55950 | 29.588 | 267 | 180 | 2 | 30 | 292 | 1 | 263 | 1.07e-30 | 119 |
| MS.gene007674.t1 | AT5G57100 | 30.263 | 228 | 151 | 2 | 19 | 242 | 75 | 298 | 1.55e-27 | 110 |
| MS.gene007674.t1 | AT5G57100 | 32.308 | 195 | 128 | 1 | 7 | 197 | 63 | 257 | 4.29e-25 | 102 |
| MS.gene007674.t1 | AT5G57100 | 30.198 | 202 | 137 | 1 | 95 | 296 | 40 | 237 | 2.39e-23 | 98.2 |
| MS.gene007674.t1 | AT5G55950 | 28.333 | 240 | 164 | 2 | 7 | 242 | 56 | 291 | 3.32e-23 | 98.6 |
| MS.gene007674.t1 | AT1G21870 | 25.472 | 318 | 219 | 6 | 19 | 325 | 26 | 336 | 1.58e-19 | 88.6 |
| MS.gene007674.t1 | AT4G32390 | 26.036 | 338 | 217 | 11 | 19 | 342 | 29 | 347 | 3.32e-19 | 87.8 |
| MS.gene007674.t1 | AT5G25400 | 26.036 | 338 | 216 | 13 | 19 | 342 | 29 | 346 | 7.69e-19 | 86.7 |
| MS.gene007674.t1 | AT1G77610 | 25.267 | 281 | 201 | 4 | 19 | 292 | 20 | 298 | 1.93e-18 | 85.5 |
| MS.gene007674.t1 | AT2G25520 | 25.519 | 337 | 219 | 11 | 19 | 341 | 29 | 347 | 4.07e-18 | 84.7 |
| MS.gene007674.t1 | AT5G11230 | 25.882 | 340 | 216 | 13 | 19 | 342 | 29 | 348 | 2.72e-17 | 82.4 |
| MS.gene007674.t1 | AT4G32272 | 26.115 | 314 | 202 | 9 | 2 | 293 | 34 | 339 | 1.48e-14 | 74.3 |
| MS.gene007674.t1 | AT4G32272 | 26.073 | 303 | 195 | 8 | 13 | 293 | 59 | 354 | 4.19e-14 | 72.8 |
| MS.gene007674.t1 | AT5G05820 | 26.333 | 300 | 193 | 8 | 17 | 301 | 20 | 306 | 4.12e-11 | 63.5 |
| MS.gene007674.t1 | AT3G11320 | 26.403 | 303 | 189 | 9 | 17 | 301 | 20 | 306 | 7.74e-11 | 62.8 |
| MS.gene007674.t1 | AT3G17430 | 24.412 | 340 | 213 | 14 | 19 | 343 | 23 | 333 | 8.14e-11 | 63.2 |
| MS.gene007674.t1 | AT3G17430 | 24.412 | 340 | 213 | 14 | 19 | 343 | 23 | 333 | 8.14e-11 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACTGAAAGGAACATTAT+TGG | 0.175320 | 4.3:-42488865 | MS.gene007674:CDS |
| TCTCTATTCTTCTTACTTGT+TGG | 0.215453 | 4.3:-42489925 | MS.gene007674:CDS |
| CTCAAGACTTGTCTTGTTCT+AGG | 0.215923 | 4.3:-42488916 | MS.gene007674:CDS |
| ACTTGTCTTGTTCTAGGATT+TGG | 0.249840 | 4.3:-42488910 | MS.gene007674:CDS |
| CAATTCCATTGGATTCTATC+AGG | 0.280510 | 4.3:-42490610 | MS.gene007674:intron |
| AAAACCAAGATTGCTCATTA+AGG | 0.290101 | 4.3:+42490901 | None:intergenic |
| GTTCTCTTGAGTGCAGAAAT+AGG | 0.307448 | 4.3:+42488807 | None:intergenic |
| TTTAGCACATTCCTAGTAAT+AGG | 0.309611 | 4.3:-42488976 | MS.gene007674:CDS |
| GTTACCTGAACTGCTTCTTT+AGG | 0.317401 | 4.3:+42490064 | None:intergenic |
| ACTTACAAGTTGGCATTTGA+TGG | 0.352879 | 4.3:-42490766 | MS.gene007674:CDS |
| ATAGAGAGAGTTTAATATTC+CGG | 0.359278 | 4.3:+42489941 | None:intergenic |
| CCCAACACTTGATATGTTAC+TGG | 0.360239 | 4.3:+42488943 | None:intergenic |
| AAAGCCTTAATGAGCAATCT+TGG | 0.364932 | 4.3:-42490905 | MS.gene007674:CDS |
| TTCTTCTTACTTGTTGGAGT+TGG | 0.376842 | 4.3:-42489919 | MS.gene007674:CDS |
| AGCCTTGGCTTCAATTCCAT+TGG | 0.380768 | 4.3:-42490621 | MS.gene007674:CDS |
| CGATCCTCCTTTGTCGTCTC+AGG | 0.401787 | 4.3:-42488767 | MS.gene007674:intron |
| ATGACAGTCTTCATGTCAAC+AGG | 0.417274 | 4.3:+42490690 | None:intergenic |
| AGTCTTCATGTCAACAGGTT+TGG | 0.432306 | 4.3:+42490695 | None:intergenic |
| GGATTTCTCAACTTGAGCCT+TGG | 0.433359 | 4.3:-42490636 | MS.gene007674:CDS |
| TCTACGTTTCAATTTGTTTG+AGG | 0.450634 | 4.3:-42490718 | MS.gene007674:CDS |
| TAATGTTCCTTTCAGTGAAA+GGG | 0.465034 | 4.3:+42488869 | None:intergenic |
| ATTCTAAATGGTGTCTCCAT+TGG | 0.473165 | 4.3:-42490657 | MS.gene007674:CDS |
| TTTCAGGCCCTCTTGTGGAT+CGG | 0.483362 | 4.3:-42489455 | MS.gene007674:CDS |
| CCAGTAACATATCAAGTGTT+GGG | 0.487472 | 4.3:-42488943 | MS.gene007674:CDS |
| ATAATGTTCCTTTCAGTGAA+AGG | 0.490738 | 4.3:+42488868 | None:intergenic |
| CAAATATTCTCCTCTAGTCT+TGG | 0.494440 | 4.3:-42489403 | MS.gene007674:intron |
| AAAAGAATTGCTGCTTGGAA+TGG | 0.498395 | 4.3:+42489480 | None:intergenic |
| AAGCTTCTTCTGTATTGTGT+TGG | 0.500555 | 4.3:+42489539 | None:intergenic |
| AAACATGGATGATCAGGAAA+AGG | 0.505311 | 4.3:-42488623 | MS.gene007674:CDS |
| TCCAGTAACATATCAAGTGT+TGG | 0.519813 | 4.3:-42488944 | MS.gene007674:CDS |
| GATAGCTAGAAGTGATAGAA+TGG | 0.526790 | 4.3:+42489855 | None:intergenic |
| TGGTGCACTATTCCTTTCTG+TGG | 0.529063 | 4.3:-42490957 | MS.gene007674:CDS |
| TCCTTTCAGTGAAAGGGTCA+TGG | 0.532382 | 4.3:+42488875 | None:intergenic |
| TCCATGACCCTTTCACTGAA+AGG | 0.541368 | 4.3:-42488876 | MS.gene007674:CDS |
| TTCCAACAAAATTGAGCTGA+AGG | 0.545680 | 4.3:+42489878 | None:intergenic |
| GTTTCTAGCATAACTGTGAA+TGG | 0.548850 | 4.3:+42490093 | None:intergenic |
| GGCTTTGTTGCATATGACAA+TGG | 0.551399 | 4.3:+42490922 | None:intergenic |
| GCTATCATAACAACATGTGT+TGG | 0.567567 | 4.3:-42489838 | MS.gene007674:CDS |
| CAGCCACAACACTTACAAGT+TGG | 0.572331 | 4.3:-42490776 | MS.gene007674:CDS |
| TGAAACGTAGAGCCACATGA+AGG | 0.581415 | 4.3:+42490730 | None:intergenic |
| ATCCAATGGAATTGAAGCCA+AGG | 0.586597 | 4.3:+42490619 | None:intergenic |
| AGACAGAAGAAGCCACAGAA+AGG | 0.589376 | 4.3:+42490945 | None:intergenic |
| GCTCAAGTTGAGAAATCCAA+TGG | 0.598682 | 4.3:+42490641 | None:intergenic |
| ACATTACTTACCAAGACTAG+AGG | 0.601567 | 4.3:+42489393 | None:intergenic |
| CTGCTTGGAATGGAGCAGAC+TGG | 0.603506 | 4.3:+42489490 | None:intergenic |
| GAACAAGACAAGTCTTGAGA+TGG | 0.613490 | 4.3:+42488920 | None:intergenic |
| GTAAACCTGATAGAATCCAA+TGG | 0.616739 | 4.3:+42490605 | None:intergenic |
| AAAATTACCTGAGACGACAA+AGG | 0.636716 | 4.3:+42488760 | None:intergenic |
| GTTAGCATCCGATCCACAAG+AGG | 0.641060 | 4.3:+42489447 | None:intergenic |
| GAAACGTAGAGCCACATGAA+GGG | 0.652124 | 4.3:+42490731 | None:intergenic |
| ATGCCAACTTGTAAGTGTTG+TGG | 0.665045 | 4.3:+42490773 | None:intergenic |
| ATTACCTGAGACGACAAAGG+AGG | 0.680324 | 4.3:+42488763 | None:intergenic |
| TTAGCATCCGATCCACAAGA+GGG | 0.706454 | 4.3:+42489448 | None:intergenic |
| AGACTGGTAGAGAAGTTGTG+TGG | 0.708746 | 4.3:+42489506 | None:intergenic |
| TGAGTCTAAGAAAACAAACA+AGG | 0.709295 | 4.3:-42488593 | MS.gene007674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATATATTTAAAAT+AGG | + | chr4.3:42489255-42489274 | None:intergenic | 0.0% |
| !! | ACATAATGTATTATTAATTA+GGG | + | chr4.3:42490369-42490388 | None:intergenic | 10.0% |
| !! | ATTAATAATACATTATGTAA+TGG | - | chr4.3:42490371-42490390 | MS.gene007674:intron | 10.0% |
| !! | ATTAATATATTTATTACTAG+TGG | + | chr4.3:42488998-42489017 | None:intergenic | 10.0% |
| !! | TACATAATGTATTATTAATT+AGG | + | chr4.3:42490370-42490389 | None:intergenic | 10.0% |
| !! | ATACATAAAACACTTAATTT+AGG | - | chr4.3:42489952-42489971 | MS.gene007674:intron | 15.0% |
| !! | TAAAATCATATTCTATGTAT+TGG | + | chr4.3:42490487-42490506 | None:intergenic | 15.0% |
| !! | TACATAAAACACTTAATTTA+GGG | - | chr4.3:42489953-42489972 | MS.gene007674:intron | 15.0% |
| !! | TTATGAATATATAACTCATA+TGG | - | chr4.3:42490504-42490523 | MS.gene007674:intron | 15.0% |
| !!! | TATCTTTGATTATATTTTTC+AGG | - | chr4.3:42490876-42490895 | MS.gene007674:intron | 15.0% |
| !!! | TTATTTTTGTCACATTAATT+TGG | - | chr4.3:42488761-42488780 | MS.gene007674:intron | 15.0% |
| !! | AAAATATAACGTGAAGAAAA+AGG | - | chr4.3:42490295-42490314 | MS.gene007674:intron | 20.0% |
| !! | AAAGGAATATAGAACATTAA+AGG | + | chr4.3:42489761-42489780 | None:intergenic | 20.0% |
| !! | TAAAGATATTAAGTAGTTGT+AGG | - | chr4.3:42490322-42490341 | MS.gene007674:intron | 20.0% |
| !! | TTTATAACTAGTATAAGACA+CGG | + | chr4.3:42490219-42490238 | None:intergenic | 20.0% |
| !!! | GTACTTTTCATGATAAAAAA+TGG | - | chr4.3:42488725-42488744 | MS.gene007674:intron | 20.0% |
| !!! | TATTTTTCAGGTTAAAGATA+CGG | - | chr4.3:42490888-42490907 | MS.gene007674:intron | 20.0% |
| ! | AATATTAGCATGCTAACAAA+AGG | + | chr4.3:42489779-42489798 | None:intergenic | 25.0% |
| ! | AATATTGATACATGCATCAA+AGG | + | chr4.3:42489052-42489071 | None:intergenic | 25.0% |
| ! | ATAGAGAGAGTTTAATATTC+CGG | + | chr4.3:42489624-42489643 | None:intergenic | 25.0% |
| ! | ATTGAAATTAATTCTGACCA+TGG | - | chr4.3:42489547-42489566 | MS.gene007674:intron | 25.0% |
| ! | CAAAAATGATAATTACCGAA+TGG | + | chr4.3:42488687-42488706 | None:intergenic | 25.0% |
| ! | CATACCAATGTTTCAAAAAT+CGG | + | chr4.3:42489370-42489389 | None:intergenic | 25.0% |
| ! | GAACATTAAAGGATACAATT+TGG | + | chr4.3:42489750-42489769 | None:intergenic | 25.0% |
| ! | GAATTAATTTCAATATCGCT+AGG | + | chr4.3:42489541-42489560 | None:intergenic | 25.0% |
| ! | GAGAAACAATGTAAGAAAAA+TGG | + | chr4.3:42490833-42490852 | None:intergenic | 25.0% |
| !! | ACTTTTGAATGGTAAAAACA+TGG | - | chr4.3:42490924-42490943 | MS.gene007674:CDS | 25.0% |
| !!! | ATAAATTCACCACTTTTGAA+TGG | - | chr4.3:42490913-42490932 | MS.gene007674:CDS | 25.0% |
| !!! | ATGTTTTTACCATTCAAAAG+TGG | + | chr4.3:42490925-42490944 | None:intergenic | 25.0% |
| !!! | TACATTATGTAATGGATAAC+AGG | - | chr4.3:42490379-42490398 | MS.gene007674:intron | 25.0% |
| AAAACCAAGATTGCTCATTA+AGG | + | chr4.3:42488664-42488683 | None:intergenic | 30.0% | |
| AAACAAAAAGAATTGCTGCT+TGG | + | chr4.3:42490090-42490109 | None:intergenic | 30.0% | |
| ATAATGTTCCTTTCAGTGAA+AGG | + | chr4.3:42490697-42490716 | None:intergenic | 30.0% | |
| ATACTATTTGTGAGAGCTTA+TGG | - | chr4.3:42489845-42489864 | MS.gene007674:CDS | 30.0% | |
| CAAATAAAATCTTGACCCAA+AGG | - | chr4.3:42489322-42489341 | MS.gene007674:intron | 30.0% | |
| GATGAAAGTCTGAAAAACAA+AGG | + | chr4.3:42490533-42490552 | None:intergenic | 30.0% | |
| GTTAGCATGCTAATATTATG+TGG | - | chr4.3:42489782-42489801 | MS.gene007674:intron | 30.0% | |
| TAATGTTCCTTTCAGTGAAA+GGG | + | chr4.3:42490696-42490715 | None:intergenic | 30.0% | |
| TCTCTATTCTTCTTACTTGT+TGG | - | chr4.3:42489637-42489656 | MS.gene007674:intron | 30.0% | |
| TGAGTCTAAGAAAACAAACA+AGG | - | chr4.3:42490969-42490988 | MS.gene007674:CDS | 30.0% | |
| TTCACTGAAAGGAACATTAT+TGG | - | chr4.3:42490697-42490716 | MS.gene007674:CDS | 30.0% | |
| TTCATATCCTAGATAGCTTA+TGG | + | chr4.3:42489889-42489908 | None:intergenic | 30.0% | |
| TTGTTCAATCAGTTTAACCA+AGG | + | chr4.3:42489305-42489324 | None:intergenic | 30.0% | |
| TTTAGCACATTCCTAGTAAT+AGG | - | chr4.3:42490586-42490605 | MS.gene007674:intron | 30.0% | |
| ! | CACTTAATTTAGGGCTTTAA+AGG | - | chr4.3:42489962-42489981 | MS.gene007674:intron | 30.0% |
| ! | GAGATGTTTTTCCTATTACT+AGG | + | chr4.3:42490600-42490619 | None:intergenic | 30.0% |
| ! | TCTACGTTTCAATTTGTTTG+AGG | - | chr4.3:42488844-42488863 | MS.gene007674:CDS | 30.0% |
| !! | ATGCTTTTTGGCATTCTAAA+TGG | - | chr4.3:42488893-42488912 | MS.gene007674:CDS | 30.0% |
| !! | TTAATTTAGGGCTTTAAAGG+AGG | - | chr4.3:42489965-42489984 | MS.gene007674:intron | 30.0% |
| AAAACTCAATTGGGGGTTAT+TGG | - | chr4.3:42488585-42488604 | MS.gene007674:CDS | 35.0% | |
| AAAATTACCTGAGACGACAA+AGG | + | chr4.3:42490805-42490824 | None:intergenic | 35.0% | |
| AAACATGGATGATCAGGAAA+AGG | - | chr4.3:42490939-42490958 | MS.gene007674:CDS | 35.0% | |
| AAAGCCTTAATGAGCAATCT+TGG | - | chr4.3:42488657-42488676 | MS.gene007674:CDS | 35.0% | |
| AAGCAGGCTGCAAAATAATT+GGG | + | chr4.3:42489147-42489166 | None:intergenic | 35.0% | |
| AAGCTTCTTCTGTATTGTGT+TGG | + | chr4.3:42490026-42490045 | None:intergenic | 35.0% | |
| ACATTACTTACCAAGACTAG+AGG | + | chr4.3:42490172-42490191 | None:intergenic | 35.0% | |
| ATCGAATTGGTGAAACCTTT+GGG | + | chr4.3:42489340-42489359 | None:intergenic | 35.0% | |
| ATTCTAAATGGTGTCTCCAT+TGG | - | chr4.3:42488905-42488924 | MS.gene007674:CDS | 35.0% | |
| ATTGGCTAAATTGGATGGTT+CGG | + | chr4.3:42489087-42489106 | None:intergenic | 35.0% | |
| CAAATATTCTCCTCTAGTCT+TGG | - | chr4.3:42490159-42490178 | MS.gene007674:intron | 35.0% | |
| CAATTCCATTGGATTCTATC+AGG | - | chr4.3:42488952-42488971 | MS.gene007674:CDS | 35.0% | |
| CCAGTAACATATCAAGTGTT+GGG | - | chr4.3:42490619-42490638 | MS.gene007674:CDS | 35.0% | |
| GATAGCTAGAAGTGATAGAA+TGG | + | chr4.3:42489710-42489729 | None:intergenic | 35.0% | |
| GCTATCATAACAACATGTGT+TGG | - | chr4.3:42489724-42489743 | MS.gene007674:intron | 35.0% | |
| GGATTGAATTGGGGTTAAAT+CGG | - | chr4.3:42489172-42489191 | MS.gene007674:intron | 35.0% | |
| GTAAACCTGATAGAATCCAA+TGG | + | chr4.3:42488960-42488979 | None:intergenic | 35.0% | |
| GTTCAATTGGCTAAATTGGA+TGG | + | chr4.3:42489092-42489111 | None:intergenic | 35.0% | |
| TAAGCAATTTAGCATGACCA+TGG | + | chr4.3:42489567-42489586 | None:intergenic | 35.0% | |
| TCCAGTAACATATCAAGTGT+TGG | - | chr4.3:42490618-42490637 | MS.gene007674:CDS | 35.0% | |
| TGGTAAAAACATGGATGATC+AGG | - | chr4.3:42490933-42490952 | MS.gene007674:CDS | 35.0% | |
| TTCCAACAAAATTGAGCTGA+AGG | + | chr4.3:42489687-42489706 | None:intergenic | 35.0% | |
| ! | AAAAGAATTGCTGCTTGGAA+TGG | + | chr4.3:42490085-42490104 | None:intergenic | 35.0% |
| ! | ACTTACAAGTTGGCATTTGA+TGG | - | chr4.3:42488796-42488815 | MS.gene007674:CDS | 35.0% |
| ! | ATGAAGACTGTCATGCTTTT+TGG | - | chr4.3:42488881-42488900 | MS.gene007674:CDS | 35.0% |
| ! | ATTTTACTACTATGTGCAGC+CGG | - | chr4.3:42489602-42489621 | MS.gene007674:intron | 35.0% |
| ! | GGAATACTAGTAGCAGTTTT+TGG | - | chr4.3:42490718-42490737 | MS.gene007674:CDS | 35.0% |
| ! | GTATGCAAAGACATTTTGCT+TGG | + | chr4.3:42490140-42490159 | None:intergenic | 35.0% |
| ! | TTCTTCTTACTTGTTGGAGT+TGG | - | chr4.3:42489643-42489662 | MS.gene007674:intron | 35.0% |
| ! | TTTTCCTAAAGAAGCAGTTC+AGG | - | chr4.3:42489494-42489513 | MS.gene007674:CDS | 35.0% |
| !! | ACTAGTAGCAGTTTTTGGAA+TGG | - | chr4.3:42490723-42490742 | MS.gene007674:CDS | 35.0% |
| !! | ACTTGTCTTGTTCTAGGATT+TGG | - | chr4.3:42490652-42490671 | MS.gene007674:CDS | 35.0% |
| !! | AGCAATCTTGGTTTTCCATT+CGG | - | chr4.3:42488669-42488688 | MS.gene007674:intron | 35.0% |
| !! | GCAGCAATTCTTTTTGTTTC+AGG | - | chr4.3:42490091-42490110 | MS.gene007674:CDS | 35.0% |
| !! | GTTTCTAGCATAACTGTGAA+TGG | + | chr4.3:42489472-42489491 | None:intergenic | 35.0% |
| !! | TGCTTGAAACGGATTGAATT+GGG | - | chr4.3:42489162-42489181 | MS.gene007674:intron | 35.0% |
| !!! | CTAGTAGCAGTTTTTGGAAT+GGG | - | chr4.3:42490724-42490743 | MS.gene007674:CDS | 35.0% |
| AGTCTTCATGTCAACAGGTT+TGG | + | chr4.3:42488870-42488889 | None:intergenic | 40.0% | |
| ATCCAATGGAATTGAAGCCA+AGG | + | chr4.3:42488946-42488965 | None:intergenic | 40.0% | |
| ATGACAGTCTTCATGTCAAC+AGG | + | chr4.3:42488875-42488894 | None:intergenic | 40.0% | |
| CAAGCAGGCTGCAAAATAAT+TGG | + | chr4.3:42489148-42489167 | None:intergenic | 40.0% | |
| CAATTCAATCCGTTTCAAGC+AGG | + | chr4.3:42489163-42489182 | None:intergenic | 40.0% | |
| CAGTTTAACCAAGGTTGAAC+AGG | + | chr4.3:42489296-42489315 | None:intergenic | 40.0% | |
| CCCAACACTTGATATGTTAC+TGG | + | chr4.3:42490622-42490641 | None:intergenic | 40.0% | |
| CTCGGTTCAATTGGCTAAAT+TGG | + | chr4.3:42489096-42489115 | None:intergenic | 40.0% | |
| GAACAAGACAAGTCTTGAGA+TGG | + | chr4.3:42490645-42490664 | None:intergenic | 40.0% | |
| GAATTGGGGTTAAATCGGTT+TGG | - | chr4.3:42489177-42489196 | MS.gene007674:intron | 40.0% | |
| GACAAGTCCATAAGCTATCT+AGG | - | chr4.3:42489879-42489898 | MS.gene007674:CDS | 40.0% | |
| GATCGAATTGGTGAAACCTT+TGG | + | chr4.3:42489341-42489360 | None:intergenic | 40.0% | |
| GGTTTCACCAATTCGATCTT+CGG | - | chr4.3:42489343-42489362 | MS.gene007674:intron | 40.0% | |
| GTTACCTGAACTGCTTCTTT+AGG | + | chr4.3:42489501-42489520 | None:intergenic | 40.0% | |
| GTTCTCTTGAGTGCAGAAAT+AGG | + | chr4.3:42490758-42490777 | None:intergenic | 40.0% | |
| TAGCCAATTGAACCGAGAAT+CGG | - | chr4.3:42489099-42489118 | MS.gene007674:intron | 40.0% | |
| TATAAACCCGTGCAATTCAC+AGG | - | chr4.3:42490233-42490252 | MS.gene007674:intron | 40.0% | |
| TTGATCATCCTGTTCAACCT+TGG | - | chr4.3:42489285-42489304 | MS.gene007674:intron | 40.0% | |
| ! | AGTTTCAGACACTAGTCTAG+TGG | + | chr4.3:42490455-42490474 | None:intergenic | 40.0% |
| ! | ATGCCAACTTGTAAGTGTTG+TGG | + | chr4.3:42488792-42488811 | None:intergenic | 40.0% |
| ! | ATTTTGCAGCCTGCTTGAAA+CGG | - | chr4.3:42489151-42489170 | MS.gene007674:intron | 40.0% |
| ! | CTCAAGACTTGTCTTGTTCT+AGG | - | chr4.3:42490646-42490665 | MS.gene007674:CDS | 40.0% |
| ! | GACCTTCAGCTCAATTTTGT+TGG | - | chr4.3:42489682-42489701 | MS.gene007674:intron | 40.0% |
| ! | TAACCGATTCTCGGTTCAAT+TGG | + | chr4.3:42489105-42489124 | None:intergenic | 40.0% |
| !! | CTGCTTGAAACGGATTGAAT+TGG | - | chr4.3:42489161-42489180 | MS.gene007674:intron | 40.0% |
| !! | GCTCAAGTTGAGAAATCCAA+TGG | + | chr4.3:42488924-42488943 | None:intergenic | 40.0% |
| !! | GCTTGAAACGGATTGAATTG+GGG | - | chr4.3:42489163-42489182 | MS.gene007674:intron | 40.0% |
| !! | GGCTTTGTTGCATATGACAA+TGG | + | chr4.3:42488643-42488662 | None:intergenic | 40.0% |
| !! | TACTTTTTGCACCCTTCATG+TGG | - | chr4.3:42488820-42488839 | MS.gene007674:CDS | 40.0% |
| !!! | CGGTCCGATTTTTGAAACAT+TGG | - | chr4.3:42489363-42489382 | MS.gene007674:intron | 40.0% |
| AACTAGTATAAGACACGGCG+AGG | + | chr4.3:42490214-42490233 | None:intergenic | 45.0% | |
| AATCGGACCGAAGATCGAAT+TGG | + | chr4.3:42489353-42489372 | None:intergenic | 45.0% | |
| AATGTCGCCTGTGAATTGCA+CGG | + | chr4.3:42490243-42490262 | None:intergenic | 45.0% | |
| AGACAGAAGAAGCCACAGAA+AGG | + | chr4.3:42488620-42488639 | None:intergenic | 45.0% | |
| AGACTGGTAGAGAAGTTGTG+TGG | + | chr4.3:42490059-42490078 | None:intergenic | 45.0% | |
| AGCCTTGGCTTCAATTCCAT+TGG | - | chr4.3:42488941-42488960 | MS.gene007674:CDS | 45.0% | |
| ATTACCTGAGACGACAAAGG+AGG | + | chr4.3:42490802-42490821 | None:intergenic | 45.0% | |
| CAGCCACAACACTTACAAGT+TGG | - | chr4.3:42488786-42488805 | MS.gene007674:CDS | 45.0% | |
| GAAACGTAGAGCCACATGAA+GGG | + | chr4.3:42488834-42488853 | None:intergenic | 45.0% | |
| GGATTTCTCAACTTGAGCCT+TGG | - | chr4.3:42488926-42488945 | MS.gene007674:CDS | 45.0% | |
| TCCATGACCCTTTCACTGAA+AGG | - | chr4.3:42490686-42490705 | MS.gene007674:CDS | 45.0% | |
| TCCTTTCAGTGAAAGGGTCA+TGG | + | chr4.3:42490690-42490709 | None:intergenic | 45.0% | |
| TGAAACGTAGAGCCACATGA+AGG | + | chr4.3:42488835-42488854 | None:intergenic | 45.0% | |
| TGAACCGAGAATCGGTTAGT+TGG | - | chr4.3:42489107-42489126 | MS.gene007674:intron | 45.0% | |
| TGGTGCACTATTCCTTTCTG+TGG | - | chr4.3:42488605-42488624 | MS.gene007674:CDS | 45.0% | |
| TTAGCATCCGATCCACAAGA+GGG | + | chr4.3:42490117-42490136 | None:intergenic | 45.0% | |
| TTGGTTGCGGTAGATTCAAC+TGG | - | chr4.3:42489196-42489215 | MS.gene007674:intron | 45.0% | |
| ! | CAACTTGTAAGTGTTGTGGC+TGG | + | chr4.3:42488788-42488807 | None:intergenic | 45.0% |
| ! | CTGACCAACTAACCGATTCT+CGG | + | chr4.3:42489114-42489133 | None:intergenic | 45.0% |
| ! | GAATCGGTTAGTTGGTCAGT+TGG | - | chr4.3:42489115-42489134 | MS.gene007674:intron | 45.0% |
| !! | GGGTTAAATCGGTTTGGTTG+CGG | - | chr4.3:42489183-42489202 | MS.gene007674:intron | 45.0% |
| !! | TTTTGTTTCAGGCCCTCTTG+TGG | - | chr4.3:42490102-42490121 | MS.gene007674:CDS | 45.0% |
| !! | AAAAAAATGTTAAAAATATT+TGG | - | chr4.3:42489025-42489044 | MS.gene007674:intron | 5.0% |
| !! | AGTAATAAATATATTAATTA+TGG | - | chr4.3:42489000-42489019 | MS.gene007674:CDS | 5.0% |
| ATGTCGCCTGTGAATTGCAC+GGG | + | chr4.3:42490242-42490261 | None:intergenic | 50.0% | |
| GTTAGCATCCGATCCACAAG+AGG | + | chr4.3:42490118-42490137 | None:intergenic | 50.0% | |
| TTTCAGGCCCTCTTGTGGAT+CGG | - | chr4.3:42490107-42490126 | MS.gene007674:CDS | 50.0% | |
| CGATCCTCCTTTGTCGTCTC+AGG | - | chr4.3:42490795-42490814 | MS.gene007674:intron | 55.0% | |
| CTGCTTGGAATGGAGCAGAC+TGG | + | chr4.3:42490075-42490094 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 42488579 | 42491005 | 42488579 | ID=MS.gene007674 |
| chr4.3 | mRNA | 42488579 | 42491005 | 42488579 | ID=MS.gene007674.t1;Parent=MS.gene007674 |
| chr4.3 | exon | 42490894 | 42491005 | 42490894 | ID=MS.gene007674.t1.exon1;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42490894 | 42491005 | 42490894 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42490611 | 42490795 | 42490611 | ID=MS.gene007674.t1.exon2;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42490611 | 42490795 | 42490611 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42490069 | 42490136 | 42490069 | ID=MS.gene007674.t1.exon3;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42490069 | 42490136 | 42490069 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42489831 | 42489963 | 42489831 | ID=MS.gene007674.t1.exon4;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42489831 | 42489963 | 42489831 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42489404 | 42489565 | 42489404 | ID=MS.gene007674.t1.exon5;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42489404 | 42489565 | 42489404 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42488768 | 42489040 | 42488768 | ID=MS.gene007674.t1.exon6;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42488768 | 42489040 | 42488768 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| chr4.3 | exon | 42488579 | 42488686 | 42488579 | ID=MS.gene007674.t1.exon7;Parent=MS.gene007674.t1 |
| chr4.3 | CDS | 42488579 | 42488686 | 42488579 | ID=cds.MS.gene007674.t1;Parent=MS.gene007674.t1 |
| Gene Sequence |
| Protein sequence |
