AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55353

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55353.t1 MTR_5g043640 96.648 179 6 0 1 179 69 247 2.38e-124 350
MS.gene55353.t1 MTR_2g048680 37.410 139 87 0 20 158 66 204 1.23e-22 90.9
MS.gene55353.t1 MTR_2g048680 36.220 127 78 3 11 136 90 214 5.76e-18 78.6
MS.gene55353.t1 MTR_2g048680 37.681 138 86 0 21 158 147 284 6.35e-22 90.5
MS.gene55353.t1 MTR_2g048680 36.585 123 75 3 15 136 174 294 3.17e-17 77.8
MS.gene55353.t1 MTR_5g022050 32.609 138 93 0 21 158 258 395 1.67e-17 79.3
MS.gene55353.t1 MTR_1g112830 37.405 131 75 4 15 140 228 356 8.16e-17 77.4
MS.gene55353.t1 MTR_1g112830 30.137 146 101 1 14 158 161 306 1.09e-14 71.6
MS.gene55353.t1 MTR_5g023090 31.159 138 95 0 21 158 292 429 9.19e-17 77.4
MS.gene55353.t1 MTR_3g009280 38.298 141 80 1 7 140 202 342 1.41e-16 76.3
MS.gene55353.t1 MTR_6g027840 33.548 155 102 1 5 158 160 314 2.30e-16 76.3
MS.gene55353.t1 MTR_6g027840 30.857 175 98 2 5 158 295 467 1.10e-15 74.3
MS.gene55353.t1 MTR_6g027840 32.168 143 93 1 36 178 158 296 2.25e-11 61.6
MS.gene55353.t1 MTR_1g011755 33.540 161 74 3 29 156 518 678 2.36e-16 76.3
MS.gene55353.t1 MTR_4g092760 31.875 160 105 3 15 171 28 186 2.48e-16 75.9
MS.gene55353.t1 MTR_4g116160 35.659 129 80 2 15 140 129 257 5.76e-16 75.1
MS.gene55353.t1 MTR_4g116160 32.278 158 104 2 15 169 96 253 1.96e-13 67.8
MS.gene55353.t1 MTR_4g116160 30.137 146 101 1 14 158 62 207 4.07e-13 67.0
MS.gene55353.t1 MTR_4g116160 33.588 131 85 2 26 154 40 170 1.81e-12 65.1
MS.gene55353.t1 MTR_4g092760 34.884 129 81 2 15 140 116 244 8.81e-16 74.7
MS.gene55353.t1 MTR_3g491870 40.206 97 58 0 58 154 240 336 1.57e-15 73.6
MS.gene55353.t1 MTR_3g491870 34.862 109 68 1 26 134 241 346 2.09e-15 73.2
MS.gene55353.t1 MTR_3g491870 43.023 86 49 0 5 90 253 338 3.43e-14 69.7
MS.gene55353.t1 MTR_1g089180 32.667 150 80 1 16 144 280 429 2.48e-15 73.2
MS.gene55353.t1 MTR_1g089180 28.492 179 107 1 1 158 232 410 3.95e-13 67.0
MS.gene55353.t1 MTR_3g107720 30.909 165 81 2 25 156 537 701 5.11e-15 72.4
MS.gene55353.t1 MTR_8g056020 33.333 117 78 0 29 145 236 352 6.16e-15 71.6
MS.gene55353.t1 MTR_1g112820 34.109 129 82 2 15 140 196 324 9.91e-15 71.6
MS.gene55353.t1 MTR_4g116160 35.659 129 80 2 15 140 129 257 1.19e-14 71.2
MS.gene55353.t1 MTR_4g116160 32.278 158 104 2 15 169 96 253 1.13e-12 65.5
MS.gene55353.t1 MTR_4g116160 30.137 146 101 1 14 158 62 207 2.05e-12 64.7
MS.gene55353.t1 MTR_4g116160 33.588 131 85 2 26 154 40 170 3.47e-12 64.3
MS.gene55353.t1 MTR_5g026800 33.071 127 82 1 14 140 37 160 1.19e-14 70.1
MS.gene55353.t1 MTR_5g026800 30.137 146 101 1 26 170 15 160 3.66e-11 60.5
MS.gene55353.t1 MTR_5g077770 32.468 154 98 2 26 179 559 706 4.42e-14 69.7
MS.gene55353.t1 MTR_5g077770 31.875 160 105 2 19 176 585 742 5.20e-14 69.7
MS.gene55353.t1 MTR_7g115280 31.544 149 98 3 11 158 46 191 5.90e-14 69.3
MS.gene55353.t1 MTR_7g115280 33.083 133 87 2 22 154 122 252 5.08e-12 63.5
MS.gene55353.t1 MTR_7g115280 34.074 135 88 1 15 149 82 215 1.51e-11 62.4
MS.gene55353.t1 MTR_3g088410 41.111 90 53 0 40 129 38 127 1.11e-13 65.5
MS.gene55353.t1 MTR_3g088410 33.333 102 68 0 15 116 46 147 2.74e-11 59.3
MS.gene55353.t1 MTR_5g026550 36.522 115 65 3 19 125 26 140 1.30e-13 65.9
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 1.49e-13 67.4
MS.gene55353.t1 MTR_2g006870 28.708 209 116 4 2 177 516 724 2.02e-13 67.8
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 2.23e-13 67.0
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 2.48e-13 67.0
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 2.60e-13 67.0
MS.gene55353.t1 MTR_3g085630 35.616 146 85 4 22 158 484 629 2.82e-13 67.4
MS.gene55353.t1 MTR_4g113530 31.250 160 78 1 29 156 525 684 2.94e-13 67.4
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 3.42e-13 67.0
MS.gene55353.t1 MTR_2g017825 43.678 87 49 0 59 145 42 128 3.60e-13 67.0
MS.gene55353.t1 MTR_2g096190 33.333 147 93 4 1 144 150 294 4.19e-13 67.0
MS.gene55353.t1 MTR_8g088590 39.394 99 57 1 30 128 84 179 3.14e-12 64.3
MS.gene55353.t1 MTR_5g091880 38.462 91 56 0 59 149 54 144 3.26e-12 64.3
MS.gene55353.t1 MTR_6g088470 33.540 161 93 5 24 170 15 175 3.86e-12 63.9
MS.gene55353.t1 MTR_7g100430 34.146 123 78 3 6 125 176 298 1.43e-11 62.4
MS.gene55353.t1 MTR_7g117620 38.095 126 72 5 1 124 199 320 1.50e-11 62.4
MS.gene55353.t1 MTR_7g117620 35.659 129 76 5 1 125 165 290 2.73e-11 61.6
MS.gene55353.t1 MTR_2g101310 34.752 141 86 5 24 158 140 280 2.06e-11 62.0
MS.gene55353.t1 MTR_4g074170 37.363 91 54 1 22 109 682 772 7.53e-11 60.5
MS.gene55353.t1 MTR_0020s0130 39.535 86 51 1 24 108 47 132 8.68e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55353.t1 AT2G03430 71.508 179 50 1 1 179 62 239 4.13e-90 263
MS.gene55353.t1 AT2G03430 40.136 147 79 3 19 160 13 155 1.39e-21 88.2
MS.gene55353.t1 AT5G66055 35.036 137 89 0 23 159 261 397 5.37e-21 89.4
MS.gene55353.t1 AT5G66055 34.234 111 73 0 15 125 286 396 2.10e-13 67.8
MS.gene55353.t1 AT4G35450 40.870 115 68 0 26 140 184 298 1.09e-17 79.0
MS.gene55353.t1 AT4G35450 40.870 115 68 0 26 140 222 336 1.63e-17 79.0
MS.gene55353.t1 AT4G35450 40.870 115 68 0 26 140 222 336 1.63e-17 79.0
MS.gene55353.t1 AT4G35450 40.870 115 68 0 26 140 222 336 1.63e-17 79.0
MS.gene55353.t1 AT4G35450 40.870 115 68 0 26 140 230 344 1.79e-17 79.0
MS.gene55353.t1 AT3G02850 34.437 151 97 2 26 176 552 700 5.85e-17 78.2
MS.gene55353.t1 AT3G02850 33.974 156 72 1 16 140 575 730 1.57e-14 71.2
MS.gene55353.t1 AT3G02850 34.437 151 97 2 26 176 552 700 6.87e-17 77.8
MS.gene55353.t1 AT3G02850 33.974 156 72 1 16 140 575 730 1.76e-14 70.9
MS.gene55353.t1 AT5G53470 42.857 91 52 0 2 92 231 321 3.15e-16 75.1
MS.gene55353.t1 AT5G53470 37.000 100 63 0 26 125 222 321 1.05e-15 73.9
MS.gene55353.t1 AT5G53470 33.663 101 67 0 58 158 221 321 4.20e-12 63.5
MS.gene55353.t1 AT4G32500 33.333 159 75 1 29 156 549 707 5.95e-16 75.1
MS.gene55353.t1 AT4G32500 38.776 98 59 1 58 155 545 641 7.67e-11 60.5
MS.gene55353.t1 AT2G14255 32.530 166 109 2 15 177 84 249 9.29e-16 74.7
MS.gene55353.t1 AT2G14255 27.586 145 83 3 26 158 28 162 7.99e-12 63.2
MS.gene55353.t1 AT5G40160 28.986 138 98 0 21 158 151 288 1.41e-15 73.2
MS.gene55353.t1 AT5G40160 29.286 140 90 4 15 147 178 315 1.65e-12 64.7
MS.gene55353.t1 AT2G26650 31.788 151 72 2 37 156 533 683 1.95e-15 73.6
MS.gene55353.t1 AT4G27780 36.000 100 64 0 26 125 237 336 2.08e-15 73.2
MS.gene55353.t1 AT4G27780 41.346 104 52 1 2 105 246 340 6.31e-15 71.6
MS.gene55353.t1 AT4G27780 32.673 101 68 0 58 158 236 336 8.04e-12 62.8
MS.gene55353.t1 AT2G17390 38.261 115 71 0 26 140 224 338 2.62e-15 72.8
MS.gene55353.t1 AT2G26650 31.788 151 72 2 37 156 428 578 3.11e-15 73.2
MS.gene55353.t1 AT2G25600 32.716 162 78 1 29 159 551 712 3.41e-15 73.2
MS.gene55353.t1 AT2G25600 28.931 159 82 1 16 143 571 729 1.87e-11 62.4
MS.gene55353.t1 AT2G25600 36.559 93 59 0 58 150 547 639 6.59e-11 60.5
MS.gene55353.t1 AT5G20350 30.380 158 107 2 2 158 47 202 3.42e-15 72.8
MS.gene55353.t1 AT5G20350 32.895 152 96 4 15 162 124 273 3.99e-15 72.8
MS.gene55353.t1 AT5G20350 33.333 135 88 2 26 158 35 169 9.42e-14 68.9
MS.gene55353.t1 AT5G20350 30.588 170 113 3 15 179 91 260 7.52e-13 66.2
MS.gene55353.t1 AT5G40160 29.365 126 89 0 21 146 151 276 7.53e-15 70.9
MS.gene55353.t1 AT5G40160 30.579 121 77 3 15 134 178 292 3.34e-13 66.6
MS.gene55353.t1 AT3G04710 32.000 175 86 2 16 158 83 256 1.76e-14 70.9
MS.gene55353.t1 AT3G04710 33.582 134 87 2 26 158 59 191 6.70e-13 66.2
MS.gene55353.t1 AT3G04710 33.571 140 84 3 28 158 20 159 1.56e-12 65.1
MS.gene55353.t1 AT3G04710 32.000 175 86 2 16 158 307 480 1.98e-14 70.9
MS.gene55353.t1 AT3G04710 33.582 134 87 2 26 158 283 415 7.16e-13 66.2
MS.gene55353.t1 AT3G04710 33.571 140 84 3 28 158 244 383 1.88e-12 65.1
MS.gene55353.t1 AT5G37500 30.769 156 77 1 16 140 558 713 1.99e-14 70.9
MS.gene55353.t1 AT5G37500 38.318 107 64 1 14 118 521 627 9.37e-14 68.9
MS.gene55353.t1 AT4G19150 31.818 110 75 0 15 124 43 152 6.14e-14 67.8
MS.gene55353.t1 AT1G07710 37.302 126 76 3 22 144 169 294 7.68e-14 68.9
MS.gene55353.t1 AT1G07710 37.302 126 76 3 22 144 169 294 7.68e-14 68.9
MS.gene55353.t1 AT5G02620 34.783 138 87 3 9 143 112 249 8.13e-14 68.9
MS.gene55353.t1 AT5G02620 34.783 138 87 3 9 143 112 249 8.13e-14 68.9
MS.gene55353.t1 AT5G02620 34.783 138 87 3 9 143 112 249 8.13e-14 68.9
MS.gene55353.t1 AT5G02620 37.903 124 74 3 9 129 112 235 1.13e-13 68.6
MS.gene55353.t1 AT5G02620 37.903 124 74 3 9 129 112 235 1.13e-13 68.6
MS.gene55353.t1 AT5G61230 34.646 127 72 4 19 137 26 149 2.41e-13 65.1
MS.gene55353.t1 AT5G37500 34.127 126 81 1 15 140 558 681 2.45e-13 67.8
MS.gene55353.t1 AT5G37500 34.127 126 81 1 15 140 612 735 2.47e-13 67.8
MS.gene55353.t1 AT3G04710 31.361 169 83 2 16 152 83 250 4.98e-13 66.6
MS.gene55353.t1 AT3G04710 33.582 134 87 2 26 158 59 191 6.57e-13 66.2
MS.gene55353.t1 AT3G04710 33.571 140 84 3 28 158 20 159 1.51e-12 65.1
MS.gene55353.t1 AT5G12320 35.644 101 65 0 29 129 18 118 1.79e-12 62.0
MS.gene55353.t1 AT1G10870 42.391 92 50 1 21 109 687 778 5.21e-12 63.9
MS.gene55353.t1 AT1G10870 42.391 92 50 1 21 109 682 773 5.41e-12 63.9
MS.gene55353.t1 AT5G13530 32.576 132 82 3 51 179 507 634 1.37e-11 62.8
MS.gene55353.t1 AT5G13530 32.576 132 82 3 51 179 507 634 1.37e-11 62.8
MS.gene55353.t1 AT3G28880 30.573 157 100 3 12 160 15 170 1.71e-11 62.0
MS.gene55353.t1 AT4G19150 31.313 99 68 0 26 124 31 129 1.86e-11 60.8
MS.gene55353.t1 AT5G66055 32.323 99 67 0 23 121 261 359 2.26e-11 61.6
MS.gene55353.t1 AT5G07840 31.496 127 76 4 19 137 28 151 2.69e-11 59.7
MS.gene55353.t1 AT4G22200 31.298 131 88 1 28 158 547 675 3.12e-11 61.6
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 57 139 3.92e-11 60.8
MS.gene55353.t1 AT3G58760 39.080 87 53 0 59 145 53 139 9.03e-11 60.1
MS.gene55353.t1 AT2G31820 30.872 149 96 5 1 145 273 418 4.01e-11 61.2
MS.gene55353.t1 AT2G31820 32.624 141 91 4 22 158 224 364 7.45e-11 60.5
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 57 139 4.77e-11 60.8
MS.gene55353.t1 AT3G59830 39.583 96 55 1 30 125 84 176 4.97e-11 60.8
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 120 202 5.24e-11 60.8
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 120 202 5.24e-11 60.8
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 120 202 5.65e-11 60.8
MS.gene55353.t1 AT3G58760 37.349 83 52 0 30 112 120 202 5.65e-11 60.8
MS.gene55353.t1 AT2G43850 39.583 96 55 1 30 125 86 178 7.36e-11 60.5
MS.gene55353.t1 AT2G31800 37.374 99 59 1 30 128 83 178 7.78e-11 60.1
MS.gene55353.t1 AT2G43850 39.583 96 55 1 30 125 86 178 7.80e-11 60.1
MS.gene55353.t1 AT2G43850 39.583 96 55 1 30 125 86 178 7.87e-11 60.1
MS.gene55353.t1 AT5G57740 31.902 163 82 5 24 157 53 215 7.93e-11 60.1
MS.gene55353.t1 AT1G05640 32.278 158 100 5 26 176 226 383 9.54e-11 60.1

Find 48 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGGAATTCGGAGATTT+TGG 0.112109 5.2:-33246030 MS.gene55353:CDS
TTATATTAATGTTGGCATTA+TGG 0.222000 5.2:+33244101 None:intergenic
TATATTAATGTTGGCATTAT+GGG 0.246874 5.2:+33244102 None:intergenic
AATCTTCATCCGACCTTTGC+TGG 0.277498 5.2:+33244141 None:intergenic
AGGTAGCACTCCTTCTTATA+AGG 0.293510 5.2:-33241804 MS.gene55353:CDS
TGCTGCCAGCATTGGGAATT+CGG 0.328342 5.2:-33246039 MS.gene55353:CDS
TGCTAGCTGCCCGATGCAAC+GGG 0.338078 5.2:+33243918 None:intergenic
TAATGCCAACATTAATATAA+AGG 0.359237 5.2:-33244098 MS.gene55353:CDS
TTGCATCGGGCAGCTAGCAC+TGG 0.385320 5.2:-33243914 MS.gene55353:CDS
GTTCATTCTGCTGCCAGCAT+TGG 0.400779 5.2:-33246047 MS.gene55353:CDS
TTCATTCTGCTGCCAGCATT+GGG 0.405577 5.2:-33246046 MS.gene55353:CDS
TGGTTCCACCCCGTTGCATC+GGG 0.426096 5.2:-33243927 MS.gene55353:CDS
CAAATCACGGCACTCATTAG+AGG 0.434441 5.2:+33243818 None:intergenic
TTGGTTCCACCCCGTTGCAT+CGG 0.439880 5.2:-33243928 MS.gene55353:CDS
GTATCATTCAAGCATGGCCT+TGG 0.445360 5.2:+33241687 None:intergenic
CTTGTCCTTTATATTAATGT+TGG 0.455131 5.2:+33244093 None:intergenic
GTGCTAGCTGCCCGATGCAA+CGG 0.466543 5.2:+33243917 None:intergenic
CTGCTCCATGCCTTATAAGA+AGG 0.504054 5.2:+33241794 None:intergenic
ATGCTGGCAGCAGAATGAAC+CGG 0.512032 5.2:+33246050 None:intergenic
GTGGATGTGGAGGACAAGGA+AGG 0.514850 5.2:-33241769 MS.gene55353:CDS
TTTGCTGGCTGCATAGTGTA+AGG 0.518159 5.2:+33244156 None:intergenic
CTCTTTGTTATAACAAATCA+CGG 0.520454 5.2:+33243805 None:intergenic
AATCTCCGAATTCCCAATGC+TGG 0.530081 5.2:+33246034 None:intergenic
GTGTTTGTATCATTCAAGCA+TGG 0.530236 5.2:+33241681 None:intergenic
AAGGAAGGGTACACGGTGCT+TGG 0.531206 5.2:-33241754 MS.gene55353:CDS
CGTGATTTGTTATAACAAAG+AGG 0.532092 5.2:-33243804 MS.gene55353:intron
GTTGATGTTGTTGATAGAGC+TGG 0.536284 5.2:-33243848 MS.gene55353:CDS
TGCATCGGGCAGCTAGCACT+GGG 0.548238 5.2:-33243913 MS.gene55353:CDS
ATAAATAGTGGTGATGAAGA+AGG 0.550982 5.2:-33246080 MS.gene55353:CDS
GCACTCCTTCTTATAAGGCA+TGG 0.559998 5.2:-33241799 MS.gene55353:CDS
TATAAGGCATGGAGCAGATG+TGG 0.564074 5.2:-33241788 MS.gene55353:CDS
AGATGTGGATGTGGAGGACA+AGG 0.564628 5.2:-33241773 MS.gene55353:CDS
TGATGAAGAAGGGTGGGCGC+CGG 0.577543 5.2:-33246069 MS.gene55353:CDS
TTGGAGGCTTTGTTGAACAA+AGG 0.585480 5.2:-33246011 MS.gene55353:intron
AATATTGATTGATGCTGCCA+AGG 0.587026 5.2:-33241704 MS.gene55353:CDS
TTACACTATGCAGCCAGCAA+AGG 0.589849 5.2:-33244154 MS.gene55353:CDS
TAGTGGTGATGAAGAAGGGT+GGG 0.597257 5.2:-33246075 MS.gene55353:CDS
GCATGGAGCAGATGTGGATG+TGG 0.603022 5.2:-33241782 MS.gene55353:CDS
TCTGCTGAAGTGATAAATAG+TGG 0.609473 5.2:-33246092 MS.gene55353:CDS
ATAGTGGTGATGAAGAAGGG+TGG 0.609755 5.2:-33246076 MS.gene55353:CDS
TAAATAGTGGTGATGAAGAA+GGG 0.612103 5.2:-33246079 MS.gene55353:CDS
CAACATTAATATAAAGGACA+AGG 0.613454 5.2:-33244092 MS.gene55353:intron
AGCTGCCCGATGCAACGGGG+TGG 0.618931 5.2:+33243922 None:intergenic
ACTATGCAGCCAGCAAAGGT+CGG 0.624620 5.2:-33244150 MS.gene55353:CDS
GGAGGACAAGGAAGGGTACA+CGG 0.639207 5.2:-33241761 MS.gene55353:CDS
TGGATGTGGAGGACAAGGAA+GGG 0.643078 5.2:-33241768 MS.gene55353:CDS
TGGAGCAGATGTGGATGTGG+AGG 0.658645 5.2:-33241779 MS.gene55353:CDS
GCTAGCTGCCCGATGCAACG+GGG 0.716203 5.2:+33243919 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTAATATTAAAAACAAT+GGG - chr5.2:33243623-33243642 MS.gene55353:intron 10.0%
!! ATTAACTAATAATAGATTTA+GGG - chr5.2:33242115-33242134 MS.gene55353:intron 10.0%
!! ATTCCAAAAATAAAATAAAA+TGG - chr5.2:33245608-33245627 MS.gene55353:intron 10.0%
!!! AATCCATTTTATTTTATTTT+TGG + chr5.2:33245614-33245633 None:intergenic 10.0%
!! AAAGAAAAATTAAGAGAAAA+CGG + chr5.2:33242922-33242941 None:intergenic 15.0%
!! AATGTGATTATAATGAAAAT+GGG + chr5.2:33243806-33243825 None:intergenic 15.0%
!! AATTAAAATAAGCCAATATA+AGG + chr5.2:33242343-33242362 None:intergenic 15.0%
!! ATAAAAATCTATTATGTGTT+TGG - chr5.2:33245980-33245999 MS.gene55353:intron 15.0%
!! ATTAAAATAAGCCAATATAA+GGG + chr5.2:33242342-33242361 None:intergenic 15.0%
!! GATGTTAATATTAAAAACAA+TGG - chr5.2:33243622-33243641 MS.gene55353:intron 15.0%
!! GATTAACTAATAATAGATTT+AGG - chr5.2:33242114-33242133 MS.gene55353:intron 15.0%
!! TAATGTGATTATAATGAAAA+TGG + chr5.2:33243807-33243826 None:intergenic 15.0%
!! TATGATAAATTATACTCAAT+CGG + chr5.2:33244454-33244473 None:intergenic 15.0%
!! TGTTAATATTAAAAACAATG+GGG - chr5.2:33243624-33243643 MS.gene55353:intron 15.0%
!!! AAAAAGAACATAATTTTACA+TGG + chr5.2:33245313-33245332 None:intergenic 15.0%
!!! AAAAGAACATAATTTTACAT+GGG + chr5.2:33245312-33245331 None:intergenic 15.0%
!!! AATAAATTGATTACAAGTTT+TGG - chr5.2:33244482-33244501 MS.gene55353:intron 15.0%
!!! ATTTATTTGAGATTATCTAT+TGG - chr5.2:33241879-33241898 MS.gene55353:intron 15.0%
!!! GCTTATTTTAATTTTTCTAT+TGG - chr5.2:33242350-33242369 MS.gene55353:intron 15.0%
!! AAATATAATCATGAAGTGTA+TGG + chr5.2:33243017-33243036 None:intergenic 20.0%
!! AATAAGCTAAAAAAAGCTTA+CGG + chr5.2:33242431-33242450 None:intergenic 20.0%
!! AATATAATCATGAAGTGTAT+GGG + chr5.2:33243016-33243035 None:intergenic 20.0%
!! ATAATGTGAAGAAATATTGT+TGG + chr5.2:33244793-33244812 None:intergenic 20.0%
!! ATAGGACTATTTGTATAATT+AGG + chr5.2:33243294-33243313 None:intergenic 20.0%
!! GAAAACAAAATAATAGAAAC+TGG + chr5.2:33245550-33245569 None:intergenic 20.0%
!! GTTAATATTAAAAACAATGG+GGG - chr5.2:33243625-33243644 MS.gene55353:intron 20.0%
!! TAATGCCAACATTAATATAA+AGG - chr5.2:33243714-33243733 MS.gene55353:intron 20.0%
!! TAATGTGAAGAAATATTGTT+GGG + chr5.2:33244792-33244811 None:intergenic 20.0%
!! TATATTAATGTTGGCATTAT+GGG + chr5.2:33243713-33243732 None:intergenic 20.0%
!! TGAAATAAAAGTTGAATTTC+AGG - chr5.2:33244626-33244645 MS.gene55353:intron 20.0%
!! TTATATTAATGTTGGCATTA+TGG + chr5.2:33243714-33243733 None:intergenic 20.0%
!!! AATCATTCATATTAAGCTTT+TGG - chr5.2:33244518-33244537 MS.gene55353:intron 20.0%
!!! ATTTGTTTCCATTTTTAATG+AGG - chr5.2:33245461-33245480 MS.gene55353:intron 20.0%
!!! TAAGAGATTTAGAATCTATT+CGG - chr5.2:33241852-33241871 MS.gene55353:intron 20.0%
!!! TAATCGTATCAATTTTGTTT+TGG - chr5.2:33245205-33245224 MS.gene55353:intron 20.0%
!!! TCTTATTCTTCATTTTTTGT+AGG - chr5.2:33243595-33243614 MS.gene55353:intron 20.0%
!!! TTATGCTTTTTATCCAAATA+GGG - chr5.2:33242544-33242563 MS.gene55353:intron 20.0%
!!! TTTGTTTCCATTTTTAATGA+GGG - chr5.2:33245462-33245481 MS.gene55353:intron 20.0%
! AAACATTTGTCAGATTGTTT+GGG - chr5.2:33242376-33242395 MS.gene55353:intron 25.0%
! ATACAAAATCTCCCTAATTT+AGG + chr5.2:33242211-33242230 None:intergenic 25.0%
! ATATCCTAACAGTAACAATT+TGG - chr5.2:33243440-33243459 MS.gene55353:intron 25.0%
! CAACATTAATATAAAGGACA+AGG - chr5.2:33243720-33243739 MS.gene55353:intron 25.0%
! CAGAATTATATAATTTCCCT+TGG + chr5.2:33245851-33245870 None:intergenic 25.0%
! CGATTAAAAAAGAAACTGAT+CGG + chr5.2:33245191-33245210 None:intergenic 25.0%
! CTTGTCCTTTATATTAATGT+TGG + chr5.2:33243722-33243741 None:intergenic 25.0%
! GAAAACAAAATCACAATCTT+TGG + chr5.2:33244297-33244316 None:intergenic 25.0%
! TAAACATTTGTCAGATTGTT+TGG - chr5.2:33242375-33242394 MS.gene55353:intron 25.0%
! TACAAAATCTCCCTAATTTA+GGG + chr5.2:33242210-33242229 None:intergenic 25.0%
! TATAGAATAGTGGTATAGAA+AGG + chr5.2:33243423-33243442 None:intergenic 25.0%
! TATCCTAACAGTAACAATTT+GGG - chr5.2:33243441-33243460 MS.gene55353:intron 25.0%
! TTGTAAACTGTAATATGATC+AGG - chr5.2:33243861-33243880 MS.gene55353:CDS 25.0%
!! CTAAGATGAGAAATATGTTT+TGG - chr5.2:33245902-33245921 MS.gene55353:intron 25.0%
!! CTCTTTGTTATAACAAATCA+CGG + chr5.2:33244010-33244029 None:intergenic 25.0%
!! GTACAGTTTAACTTAATTGT+AGG - chr5.2:33242673-33242692 MS.gene55353:intron 25.0%
!! GTTCTTACAATTTTTATCGT+AGG - chr5.2:33244054-33244073 MS.gene55353:intron 25.0%
!! TAATAGATTTAGGGTATGTT+TGG - chr5.2:33242124-33242143 MS.gene55353:intron 25.0%
!! TATTGGAGTCTTCATAATTT+TGG - chr5.2:33245934-33245953 MS.gene55353:intron 25.0%
!!! CAGTTGATTTTTCAATCAAT+GGG - chr5.2:33244187-33244206 MS.gene55353:CDS 25.0%
!!! CTTATGCTTTTTATCCAAAT+AGG - chr5.2:33242543-33242562 MS.gene55353:intron 25.0%
!!! TAAGCTATAAGTTGTTTTCA+CGG + chr5.2:33242476-33242495 None:intergenic 25.0%
!!! TATTAAGCTTTTGGAATAGA+TGG - chr5.2:33244527-33244546 MS.gene55353:intron 25.0%
!!! TCAACTTTTATTTCAAGTCA+CGG + chr5.2:33244621-33244640 None:intergenic 25.0%
AAACTGTAATATGATCAGGT+TGG - chr5.2:33243865-33243884 MS.gene55353:CDS 30.0%
AACTTGTAAGACGTTATAGA+AGG - chr5.2:33245720-33245739 MS.gene55353:intron 30.0%
AAGAATAAGAACGTTCAAGA+TGG + chr5.2:33243585-33243604 None:intergenic 30.0%
AATTGGTGCAAAACTACATT+TGG + chr5.2:33244941-33244960 None:intergenic 30.0%
AATTTAACAGTCTCAACTCA+AGG + chr5.2:33242651-33242670 None:intergenic 30.0%
AATTTCGTTAGTTAGCTAGT+TGG + chr5.2:33243351-33243370 None:intergenic 30.0%
ACAAAATCTCCCTAATTTAG+GGG + chr5.2:33242209-33242228 None:intergenic 30.0%
ACACTAACAATTCAGATTGA+AGG + chr5.2:33243538-33243557 None:intergenic 30.0%
ACTGTTAGGATATAGAATAG+TGG + chr5.2:33243433-33243452 None:intergenic 30.0%
AGCCACAATAATTAGATGAA+TGG - chr5.2:33242736-33242755 MS.gene55353:intron 30.0%
AGCTTAGTATGCTTAACTTT+GGG - chr5.2:33245358-33245377 MS.gene55353:intron 30.0%
ATACTGTCAATCCATTCTTT+AGG + chr5.2:33245590-33245609 None:intergenic 30.0%
ATCCATTCTTTAGGTATACA+AGG + chr5.2:33245581-33245600 None:intergenic 30.0%
ATTGGTGCAAAACTACATTT+GGG + chr5.2:33244940-33244959 None:intergenic 30.0%
ATTTCGTTAGTTAGCTAGTT+GGG + chr5.2:33243350-33243369 None:intergenic 30.0%
ATTTGTAATTGTTAAGACCC+AGG - chr5.2:33243102-33243121 MS.gene55353:intron 30.0%
CACCATTCATCTAATTATTG+TGG + chr5.2:33242741-33242760 None:intergenic 30.0%
CTGAATACTAAACAGTATGA+TGG + chr5.2:33245778-33245797 None:intergenic 30.0%
CTTATTTCCATAAGATCTTC+AGG - chr5.2:33242445-33242464 MS.gene55353:intron 30.0%
GAATAAGAGATAGAGAGAAT+AGG - chr5.2:33243167-33243186 MS.gene55353:intron 30.0%
GTCAAAAAGTTTAAGCAAAC+AGG - chr5.2:33244853-33244872 MS.gene55353:intron 30.0%
TTTGTAATTGTTAAGACCCA+GGG - chr5.2:33243103-33243122 MS.gene55353:intron 30.0%
! AACCATTGATTGACCATTAA+CGG - chr5.2:33244103-33244122 MS.gene55353:CDS 30.0%
! AAGTTCTTCTGAAGAGTTTA+TGG + chr5.2:33241949-33241968 None:intergenic 30.0%
! ATAAATAGTGGTGATGAAGA+AGG - chr5.2:33241732-33241751 MS.gene55353:CDS 30.0%
! ATTTTGTTCCAAATGCAATC+TGG - chr5.2:33245274-33245293 MS.gene55353:intron 30.0%
! CTATTATGTGTTTGGTTTAC+AGG - chr5.2:33245988-33246007 MS.gene55353:intron 30.0%
! TAAATAGTGGTGATGAAGAA+GGG - chr5.2:33241733-33241752 MS.gene55353:CDS 30.0%
! TGAGTTGAGACTGTTAAATT+TGG - chr5.2:33242651-33242670 MS.gene55353:intron 30.0%
!! AACTTTTATTTCAAGTCACG+GGG + chr5.2:33244619-33244638 None:intergenic 30.0%
!! AAGCTATAAGTTGTTTTCAC+GGG + chr5.2:33242475-33242494 None:intergenic 30.0%
!! CAACTTTTATTTCAAGTCAC+GGG + chr5.2:33244620-33244639 None:intergenic 30.0%
!! CATTTTAAGAAAGGTACATG+TGG - chr5.2:33242700-33242719 MS.gene55353:intron 30.0%
!! CGTGATTTGTTATAACAAAG+AGG - chr5.2:33244008-33244027 MS.gene55353:intron 30.0%
!! GCAGTTGATTTTTCAATCAA+TGG - chr5.2:33244186-33244205 MS.gene55353:CDS 30.0%
!! TCCATTTTTAATGAGGGTAA+GGG - chr5.2:33245468-33245487 MS.gene55353:intron 30.0%
!! TGTGAACTTTTGATTGAAGA+AGG - chr5.2:33243934-33243953 MS.gene55353:intron 30.0%
!! TTCCATTTTTAATGAGGGTA+AGG - chr5.2:33245467-33245486 MS.gene55353:intron 30.0%
!!! CTTTTCAGGTATATGGTTTA+TGG - chr5.2:33244755-33244774 MS.gene55353:intron 30.0%
!!! TGTTTTGGTAGTTCTGTTAT+TGG - chr5.2:33245917-33245936 MS.gene55353:intron 30.0%
AAATGAAAAGAGCAAGTGGA+AGG + chr5.2:33242284-33242303 None:intergenic 35.0%
AATAGAAGAAAGCAGTAAGC+TGG + chr5.2:33245666-33245685 None:intergenic 35.0%
AATTAAGAGAAAACGGCAGT+TGG + chr5.2:33242915-33242934 None:intergenic 35.0%
ACCCTTACCCTCATTAAAAA+TGG + chr5.2:33245472-33245491 None:intergenic 35.0%
ACTGAAAGAGGATATTACAG+AGG + chr5.2:33244914-33244933 None:intergenic 35.0%
AGAGAAATGAAAAGAGCAAG+TGG + chr5.2:33242288-33242307 None:intergenic 35.0%
AGCTAGTTGGGATTGTTATA+GGG + chr5.2:33243338-33243357 None:intergenic 35.0%
ATTTAGTTGCACAGTGCTAA+GGG - chr5.2:33244268-33244287 MS.gene55353:intron 35.0%
CACTTTATAGTTGTGTCAAG+TGG - chr5.2:33242815-33242834 MS.gene55353:intron 35.0%
CAGCTTAGTATGCTTAACTT+TGG - chr5.2:33245357-33245376 MS.gene55353:intron 35.0%
CTCCTTGTATACCTAAAGAA+TGG - chr5.2:33245576-33245595 MS.gene55353:intron 35.0%
CTGAAAGAGGATATTACAGA+GGG + chr5.2:33244913-33244932 None:intergenic 35.0%
GAACAATTGTGAGACTGTTT+GGG - chr5.2:33241905-33241924 MS.gene55353:intron 35.0%
GATATTACAGAGGGATGAAA+TGG + chr5.2:33244904-33244923 None:intergenic 35.0%
GCTAGGTAAAGACATATGTA+TGG + chr5.2:33244730-33244749 None:intergenic 35.0%
GTAGAAATGAACCATTGACA+TGG - chr5.2:33243047-33243066 MS.gene55353:intron 35.0%
GTGGAATTATAAACCATGAG+AGG + chr5.2:33244413-33244432 None:intergenic 35.0%
GTTAAACACAAGTAATCCCT+CGG - chr5.2:33245148-33245167 MS.gene55353:intron 35.0%
GTTCCCAAATTGTTACTGTT+AGG + chr5.2:33243447-33243466 None:intergenic 35.0%
GTTGAAAACAAAACCTCTCA+TGG - chr5.2:33244397-33244416 MS.gene55353:intron 35.0%
TAAGTGATGAGATGATGTGT+TGG + chr5.2:33245517-33245536 None:intergenic 35.0%
TAATTGTACTGTCAGCTAAG+TGG - chr5.2:33242605-33242624 MS.gene55353:intron 35.0%
TAGAAGGTTGAAAATGCAGT+TGG - chr5.2:33245736-33245755 MS.gene55353:intron 35.0%
TAGCTAGTTGGGATTGTTAT+AGG + chr5.2:33243339-33243358 None:intergenic 35.0%
TATGTTTGGATTGAGGGTTT+GGG - chr5.2:33242138-33242157 MS.gene55353:intron 35.0%
TATTTAGTTGCACAGTGCTA+AGG - chr5.2:33244267-33244286 MS.gene55353:intron 35.0%
TCAACATCCACAGTTCTTAA+AGG - chr5.2:33242955-33242974 MS.gene55353:intron 35.0%
TCTGCTGAAGTGATAAATAG+TGG - chr5.2:33241720-33241739 MS.gene55353:CDS 35.0%
TCTTAGAACTTAGAAAGCCT+TGG - chr5.2:33244877-33244896 MS.gene55353:intron 35.0%
TGAACAATTGTGAGACTGTT+TGG - chr5.2:33241904-33241923 MS.gene55353:intron 35.0%
TTAGATCCTTTATGACCAAG+TGG - chr5.2:33244564-33244583 MS.gene55353:intron 35.0%
TTAGGGTATGTTTGGATTGA+GGG - chr5.2:33242132-33242151 MS.gene55353:intron 35.0%
! AAGTTGAATTTCAGGTCACA+TGG - chr5.2:33244634-33244653 MS.gene55353:intron 35.0%
! AATATTGATTGATGCTGCCA+AGG - chr5.2:33246108-33246127 MS.gene55353:CDS 35.0%
! AATTTTTCCATCGTTGTTGG+GGG - chr5.2:33244957-33244976 MS.gene55353:intron 35.0%
! ACCAATTTTTCCATCGTTGT+TGG - chr5.2:33244954-33244973 MS.gene55353:intron 35.0%
! ATACCTGAAAAGCTTTAGCT+AGG + chr5.2:33244747-33244766 None:intergenic 35.0%
! CAATTTTTCCATCGTTGTTG+GGG - chr5.2:33244956-33244975 MS.gene55353:intron 35.0%
! CAGTAAACCTTTAAGAACTG+TGG + chr5.2:33242965-33242984 None:intergenic 35.0%
! CATAATTTTACATGGGAGAC+TGG + chr5.2:33245305-33245324 None:intergenic 35.0%
! CCAATTTTTCCATCGTTGTT+GGG - chr5.2:33244955-33244974 MS.gene55353:intron 35.0%
! CTTTGAGTTCCCCTAAATTA+GGG - chr5.2:33242197-33242216 MS.gene55353:intron 35.0%
! TCTTTGAGTTCCCCTAAATT+AGG - chr5.2:33242196-33242215 MS.gene55353:intron 35.0%
! TTACCTAGCTAAAGCTTTTC+AGG - chr5.2:33244741-33244760 MS.gene55353:intron 35.0%
! TTTAGGGTATGTTTGGATTG+AGG - chr5.2:33242131-33242150 MS.gene55353:intron 35.0%
! TTTTTAATGAGGGTAAGGGT+AGG - chr5.2:33245472-33245491 MS.gene55353:intron 35.0%
!! GTAGGACGTCATTTTAAGAA+AGG - chr5.2:33242691-33242710 MS.gene55353:intron 35.0%
!!! AACTTTTAGTTTCAACACCG+AGG - chr5.2:33245817-33245836 MS.gene55353:intron 35.0%
!!! GCTAAAGCTTTTCAGGTATA+TGG - chr5.2:33244748-33244767 MS.gene55353:intron 35.0%
!!! TTTGTTTTAGTCACTTGCAC+TGG - chr5.2:33244331-33244350 MS.gene55353:intron 35.0%
AAGGACAAGGTTGTAGCATA+TGG - chr5.2:33243733-33243752 MS.gene55353:intron 40.0%
ACTAACGATTTGACCATGAG+TGG + chr5.2:33245112-33245131 None:intergenic 40.0%
AGACGTTGTGGTTGTGTAAA+TGG + chr5.2:33244832-33244851 None:intergenic 40.0%
AGCCAATATAAGGGTCTGTT+TGG + chr5.2:33242333-33242352 None:intergenic 40.0%
AGGTAGCACTCCTTCTTATA+AGG - chr5.2:33246008-33246027 MS.gene55353:intron 40.0%
AGTAGTAACTCTACCGTGAA+GGG + chr5.2:33243219-33243238 None:intergenic 40.0%
ATGTTTGGATTGAGGGTTTG+GGG - chr5.2:33242139-33242158 MS.gene55353:intron 40.0%
ATTGATTGACCATTAACGGC+AGG - chr5.2:33244107-33244126 MS.gene55353:CDS 40.0%
CCCAACAACGATGGAAAAAT+TGG + chr5.2:33244958-33244977 None:intergenic 40.0%
CTATGTATTTGTGTCGTGTC+AGG + chr5.2:33243080-33243099 None:intergenic 40.0%
CTGACACGACACAAATACAT+AGG - chr5.2:33243078-33243097 MS.gene55353:intron 40.0%
GAAACTGATCGGTTAGAACA+CGG + chr5.2:33245180-33245199 None:intergenic 40.0%
GAAAGAAATCTCTCCTCCAA+GGG - chr5.2:33243189-33243208 MS.gene55353:intron 40.0%
GACAATGCAACACAGAAACA+TGG + chr5.2:33242865-33242884 None:intergenic 40.0%
GCATACTAAGCTGTTACAGA+TGG + chr5.2:33245350-33245369 None:intergenic 40.0%
GCATTTCGTTTATAGCAAGG+TGG + chr5.2:33244432-33244451 None:intergenic 40.0%
GCCAATATAAGGGTCTGTTT+GGG + chr5.2:33242332-33242351 None:intergenic 40.0%
GGGGAACTCAAAGATTGTAT+TGG + chr5.2:33242190-33242209 None:intergenic 40.0%
GTATGTTTGGATTGAGGGTT+TGG - chr5.2:33242137-33242156 MS.gene55353:intron 40.0%
GTATTGAACTCAAGACCACT+TGG + chr5.2:33244582-33244601 None:intergenic 40.0%
GTCTGTTTGGGAGTTTAAGA+GGG + chr5.2:33242320-33242339 None:intergenic 40.0%
TCAAGACCACTTGGTCATAA+AGG + chr5.2:33244573-33244592 None:intergenic 40.0%
TCCCAAACAGACCCTTATAT+TGG - chr5.2:33242328-33242347 MS.gene55353:intron 40.0%
TCGGCATTTCGTTTATAGCA+AGG + chr5.2:33244435-33244454 None:intergenic 40.0%
TCTGTTTGGGAGTTTAAGAG+GGG + chr5.2:33242319-33242338 None:intergenic 40.0%
TGCCGTTAATGGTCAATCAA+TGG + chr5.2:33244108-33244127 None:intergenic 40.0%
TGTTGGACATTGACACATGT+CGG - chr5.2:33243507-33243526 MS.gene55353:intron 40.0%
TTGATTGACCATTAACGGCA+GGG - chr5.2:33244108-33244127 MS.gene55353:CDS 40.0%
! AACTTTTTGACGAGACGTTG+TGG + chr5.2:33244844-33244863 None:intergenic 40.0%
! ACATTTGGGACTACTGAAAG+AGG + chr5.2:33244926-33244945 None:intergenic 40.0%
! AGTAAGCTGGAGTCTTGTAA+AGG + chr5.2:33245653-33245672 None:intergenic 40.0%
! CATTGGGAATTCGGAGATTT+TGG - chr5.2:33241782-33241801 MS.gene55353:CDS 40.0%
! GTTAGTTTGAGTCAGCAATC+AGG - chr5.2:33245126-33245145 MS.gene55353:intron 40.0%
! GTTGATGTTGTTGATAGAGC+TGG - chr5.2:33243964-33243983 MS.gene55353:intron 40.0%
! TTGGCTAGTTGGGTTGTTAT+AGG + chr5.2:33243312-33243331 None:intergenic 40.0%
!! TCCTTTGAAGTCAATTCCCT+GGG + chr5.2:33243122-33243141 None:intergenic 40.0%
!! TTCCTTTGAAGTCAATTCCC+TGG + chr5.2:33243123-33243142 None:intergenic 40.0%
!! TTGGAGGCTTTGTTGAACAA+AGG - chr5.2:33241801-33241820 MS.gene55353:CDS 40.0%
AAAGCTTACGGACGTGTCAT+TGG + chr5.2:33242419-33242438 None:intergenic 45.0%
AAATGAGCAGTACGCCTTTG+AGG + chr5.2:33244231-33244250 None:intergenic 45.0%
AACCTTCACTTTCCCCTCAA+AGG - chr5.2:33244214-33244233 MS.gene55353:intron 45.0%
AATCTCCGAATTCCCAATGC+TGG + chr5.2:33241781-33241800 None:intergenic 45.0%
AATCTTCATCCGACCTTTGC+TGG + chr5.2:33243674-33243693 None:intergenic 45.0%
AATGAGCAGTACGCCTTTGA+GGG + chr5.2:33244230-33244249 None:intergenic 45.0%
AGAGCAAGTGGAAGGAATAC+AGG + chr5.2:33242276-33242295 None:intergenic 45.0%
ATCACAATCCCTGCCGTTAA+TGG + chr5.2:33244119-33244138 None:intergenic 45.0%
ATTGCGGAATTGCAGAGTGA+CGG - chr5.2:33245039-33245058 MS.gene55353:intron 45.0%
ATTGTGAGACTGTTTGGGAG+AGG - chr5.2:33241910-33241929 MS.gene55353:intron 45.0%
CAAATCACGGCACTCATTAG+AGG + chr5.2:33243997-33244016 None:intergenic 45.0%
CTCAGTGTTTGCCTAAGATG+TGG - chr5.2:33245240-33245259 MS.gene55353:intron 45.0%
CTGCTCCATGCCTTATAAGA+AGG + chr5.2:33246021-33246040 None:intergenic 45.0%
GAGTAGTAACTCTACCGTGA+AGG + chr5.2:33243220-33243239 None:intergenic 45.0%
GCACTCCTTCTTATAAGGCA+TGG - chr5.2:33246013-33246032 MS.gene55353:CDS 45.0%
GCTAGACACAAAGCCCTATT+TGG + chr5.2:33242560-33242579 None:intergenic 45.0%
GGAAAGAAATCTCTCCTCCA+AGG - chr5.2:33243188-33243207 MS.gene55353:intron 45.0%
GGAATAGATGGTTCGTGACA+TGG - chr5.2:33244539-33244558 MS.gene55353:intron 45.0%
GGGCTATCCTGAAGATCTTA+TGG + chr5.2:33242455-33242474 None:intergenic 45.0%
GGTCTGTTTGGGAGTTTAAG+AGG + chr5.2:33242321-33242340 None:intergenic 45.0%
GTACTGTCAGCTAAGTGGAT+AGG - chr5.2:33242610-33242629 MS.gene55353:intron 45.0%
GTAGTAACTCTACCGTGAAG+GGG + chr5.2:33243218-33243237 None:intergenic 45.0%
TATAAGGCATGGAGCAGATG+TGG - chr5.2:33246024-33246043 MS.gene55353:CDS 45.0%
TCGAGTGCATACCACATCTT+AGG + chr5.2:33245254-33245273 None:intergenic 45.0%
TGGAAGGAATACAGGACCTT+GGG + chr5.2:33242268-33242287 None:intergenic 45.0%
TGGGATTGTTATAGGGCTGT+TGG + chr5.2:33243331-33243350 None:intergenic 45.0%
TGTTTGGATTGAGGGTTTGG+GGG - chr5.2:33242140-33242159 MS.gene55353:intron 45.0%
TTACACTATGCAGCCAGCAA+AGG - chr5.2:33243658-33243677 MS.gene55353:intron 45.0%
TTAGGTATACAAGGAGAGCG+AGG + chr5.2:33245572-33245591 None:intergenic 45.0%
TTCATTCTGCTGCCAGCATT+GGG - chr5.2:33241766-33241785 MS.gene55353:CDS 45.0%
! ACCCAGGGAATTGACTTCAA+AGG - chr5.2:33243118-33243137 MS.gene55353:intron 45.0%
! ATAGTGGTGATGAAGAAGGG+TGG - chr5.2:33241736-33241755 MS.gene55353:CDS 45.0%
! ATTTTACATGGGAGACTGGC+CGG + chr5.2:33245301-33245320 None:intergenic 45.0%
! TAGTGGTGATGAAGAAGGGT+GGG - chr5.2:33241737-33241756 MS.gene55353:CDS 45.0%
! TATAGGGCTGTTGGCTAGTT+GGG + chr5.2:33243322-33243341 None:intergenic 45.0%
! TGGGAATTCGGAGATTTTGG+AGG - chr5.2:33241785-33241804 MS.gene55353:CDS 45.0%
! TTATAGGGCTGTTGGCTAGT+TGG + chr5.2:33243323-33243342 None:intergenic 45.0%
! TTTGCTGGCTGCATAGTGTA+AGG + chr5.2:33243659-33243678 None:intergenic 45.0%
AAGGAATACAGGACCTTGGG+AGG + chr5.2:33242265-33242284 None:intergenic 50.0%
ACTATGCAGCCAGCAAAGGT+CGG - chr5.2:33243662-33243681 MS.gene55353:intron 50.0%
ACTGATCGGTTAGAACACGG+AGG + chr5.2:33245177-33245196 None:intergenic 50.0%
AGATGTGGATGTGGAGGACA+AGG - chr5.2:33246039-33246058 MS.gene55353:CDS 50.0%
AGGAATACAGGACCTTGGGA+GGG + chr5.2:33242264-33242283 None:intergenic 50.0%
AGTGGCGTGATCGACAACAT+AGG + chr5.2:33245009-33245028 None:intergenic 50.0%
AGTTTCAACACCGAGGTGCA+AGG - chr5.2:33245824-33245843 MS.gene55353:intron 50.0%
ATGAGCAGTACGCCTTTGAG+GGG + chr5.2:33244229-33244248 None:intergenic 50.0%
ATGCTGGCAGCAGAATGAAC+CGG + chr5.2:33241765-33241784 None:intergenic 50.0%
CACAAGTGTCAGTGTCGTGT+CGG - chr5.2:33243484-33243503 MS.gene55353:intron 50.0%
CAGAGGGATGAAATGGTCCA+AGG + chr5.2:33244897-33244916 None:intergenic 50.0%
CAGGTGTGTGTCCATGTCAA+TGG + chr5.2:33243061-33243080 None:intergenic 50.0%
CTCTATGCTTCGTGTGTGTG+TGG - chr5.2:33244672-33244691 MS.gene55353:intron 50.0%
CTGTCAGCTAAGTGGATAGG+TGG - chr5.2:33242613-33242632 MS.gene55353:intron 50.0%
GCAGACCTACTCATCAGTCA+AGG - chr5.2:33244979-33244998 MS.gene55353:intron 50.0%
GCATAGAGCACAAACGCACT+CGG + chr5.2:33244660-33244679 None:intergenic 50.0%
GTGGAAGGAATACAGGACCT+TGG + chr5.2:33242269-33242288 None:intergenic 50.0%
GTTCATTCTGCTGCCAGCAT+TGG - chr5.2:33241765-33241784 MS.gene55353:CDS 50.0%
GTTCCAAATGCAATCTGGCC+CGG - chr5.2:33245279-33245298 MS.gene55353:intron 50.0%
GTTTCAACACCGAGGTGCAA+GGG - chr5.2:33245825-33245844 MS.gene55353:intron 50.0%
GTTTGGATTGAGGGTTTGGG+GGG - chr5.2:33242141-33242160 MS.gene55353:intron 50.0%
GTTTGGGAGTTTAAGAGGGG+AGG + chr5.2:33242316-33242335 None:intergenic 50.0%
TAGAACACGGAGGTTTCCGA+GGG + chr5.2:33245167-33245186 None:intergenic 50.0%
TCCGCAATTGCAAGCCAAAG+TGG + chr5.2:33245027-33245046 None:intergenic 50.0%
TGGATGTGGAGGACAAGGAA+GGG - chr5.2:33246044-33246063 MS.gene55353:CDS 50.0%
TGTTGTCGATCACGCCACTT+TGG - chr5.2:33245010-33245029 MS.gene55353:intron 50.0%
TTAGAACACGGAGGTTTCCG+AGG + chr5.2:33245168-33245187 None:intergenic 50.0%
! TGCTGCCAGCATTGGGAATT+CGG - chr5.2:33241773-33241792 MS.gene55353:CDS 50.0%
!! GCCACTTTGGCTTGCAATTG+CGG - chr5.2:33245023-33245042 MS.gene55353:intron 50.0%
!! TTTTACATGGGAGACTGGCC+GGG + chr5.2:33245300-33245319 None:intergenic 50.0%
CTCCAAGGGTTTCCCCTTCA+CGG - chr5.2:33243203-33243222 MS.gene55353:intron 55.0%
GCATGGAGCAGATGTGGATG+TGG - chr5.2:33246030-33246049 MS.gene55353:CDS 55.0%
GCGCACCTTGACTGATGAGT+AGG + chr5.2:33244987-33245006 None:intergenic 55.0%
GGAATACAGGACCTTGGGAG+GGG + chr5.2:33242263-33242282 None:intergenic 55.0%
GTGGATGTGGAGGACAAGGA+AGG - chr5.2:33246043-33246062 MS.gene55353:CDS 55.0%
TACCGTGAAGGGGAAACCCT+TGG + chr5.2:33243208-33243227 None:intergenic 55.0%
TGGAGCAGATGTGGATGTGG+AGG - chr5.2:33246033-33246052 MS.gene55353:CDS 55.0%
TTGGTTCCACCCCGTTGCAT+CGG - chr5.2:33243884-33243903 MS.gene55353:CDS 55.0%
! AAGGAAGGGTACACGGTGCT+TGG - chr5.2:33246058-33246077 MS.gene55353:CDS 55.0%
! CGCCTTTGAGGGGAAAGTGA+AGG + chr5.2:33244219-33244238 None:intergenic 55.0%
! GGAGGACAAGGAAGGGTACA+CGG - chr5.2:33246051-33246070 MS.gene55353:CDS 55.0%
! TGTCAGTGTCGTGTCGGTGT+TGG - chr5.2:33243490-33243509 MS.gene55353:intron 55.0%
! TTTCAAGTCACGGGGCAGCA+AGG + chr5.2:33244611-33244630 None:intergenic 55.0%
AGGTCTGCCCCCAACAACGA+TGG + chr5.2:33244967-33244986 None:intergenic 60.0%
AGTGGCACGCCTCCTGAATG+CGG + chr5.2:33245094-33245113 None:intergenic 60.0%
ATACAGGACCTTGGGAGGGG+AGG + chr5.2:33242260-33242279 None:intergenic 60.0%
CGTGAAGGGGAAACCCTTGG+AGG + chr5.2:33243205-33243224 None:intergenic 60.0%
GCCTCCTGAATGCGGCTCAT+CGG + chr5.2:33245086-33245105 None:intergenic 60.0%
GGATTGAGGGTTTGGGGGGA+GGG - chr5.2:33242145-33242164 MS.gene55353:intron 60.0%
GTGCTAGCTGCCCGATGCAA+CGG + chr5.2:33243898-33243917 None:intergenic 60.0%
TACAGGACCTTGGGAGGGGA+GGG + chr5.2:33242259-33242278 None:intergenic 60.0%
TCAGCCGATGAGCCGCATTC+AGG - chr5.2:33245079-33245098 MS.gene55353:intron 60.0%
TGATGAAGAAGGGTGGGCGC+CGG - chr5.2:33241743-33241762 MS.gene55353:CDS 60.0%
TGCATCGGGCAGCTAGCACT+GGG - chr5.2:33243899-33243918 MS.gene55353:CDS 60.0%
TGCTAGCTGCCCGATGCAAC+GGG + chr5.2:33243897-33243916 None:intergenic 60.0%
TGGATTGAGGGTTTGGGGGG+AGG - chr5.2:33242144-33242163 MS.gene55353:intron 60.0%
TGGCCGGGCCAGATTGCATT+TGG + chr5.2:33245285-33245304 None:intergenic 60.0%
TGGTTCCACCCCGTTGCATC+GGG - chr5.2:33243885-33243904 MS.gene55353:CDS 60.0%
TTCCCTTGGCCCTTGCACCT+CGG + chr5.2:33245837-33245856 None:intergenic 60.0%
TTGCATCGGGCAGCTAGCAC+TGG - chr5.2:33243898-33243917 MS.gene55353:CDS 60.0%
! TTCAGGAGGCGTGCCACTCA+TGG - chr5.2:33245096-33245115 MS.gene55353:intron 60.0%
ACACCGAGGTGCAAGGGCCA+AGG - chr5.2:33245831-33245850 MS.gene55353:intron 65.0%
ACCTTGGGAGGGGAGGGCTT+TGG + chr5.2:33242253-33242272 None:intergenic 65.0%
CACCGAGGTGCAAGGGCCAA+GGG - chr5.2:33245832-33245851 MS.gene55353:intron 65.0%
CCTTGGGAGGGGAGGGCTTT+GGG + chr5.2:33242252-33242271 None:intergenic 65.0%
CTTGGGAGGGGAGGGCTTTG+GGG + chr5.2:33242251-33242270 None:intergenic 65.0%
GCCGATGAGCCGCATTCAGG+AGG - chr5.2:33245082-33245101 MS.gene55353:intron 65.0%
GCTAGCTGCCCGATGCAACG+GGG + chr5.2:33243896-33243915 None:intergenic 65.0%
! TTGGGAGGGGAGGGCTTTGG+GGG + chr5.2:33242250-33242269 None:intergenic 65.0%
AGCTGCCCGATGCAACGGGG+TGG + chr5.2:33243893-33243912 None:intergenic 70.0%
CCCAAAGCCCTCCCCTCCCA+AGG - chr5.2:33242249-33242268 MS.gene55353:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 33241690 33246144 33241690 ID=MS.gene55353
chr5.2 mRNA 33241690 33246144 33241690 ID=MS.gene55353.t1;Parent=MS.gene55353
chr5.2 exon 33246012 33246144 33246012 ID=MS.gene55353.t1.exon1;Parent=MS.gene55353.t1
chr5.2 CDS 33246012 33246144 33246012 ID=cds.MS.gene55353.t1;Parent=MS.gene55353.t1
chr5.2 exon 33244093 33244217 33244093 ID=MS.gene55353.t1.exon2;Parent=MS.gene55353.t1
chr5.2 CDS 33244093 33244217 33244093 ID=cds.MS.gene55353.t1;Parent=MS.gene55353.t1
chr5.2 exon 33243805 33243951 33243805 ID=MS.gene55353.t1.exon3;Parent=MS.gene55353.t1
chr5.2 CDS 33243805 33243951 33243805 ID=cds.MS.gene55353.t1;Parent=MS.gene55353.t1
chr5.2 exon 33241690 33241824 33241690 ID=MS.gene55353.t1.exon4;Parent=MS.gene55353.t1
chr5.2 CDS 33241690 33241824 33241690 ID=cds.MS.gene55353.t1;Parent=MS.gene55353.t1
Gene Sequence

>MS.gene55353

GTGGTGAAGAAATTGTTGTCTTGTGATGCATCTGCTGAAGTGATAAATAGTGGTGATGAAGAAGGGTGGGCGCCGGTTCATTCTGCTGCCAGCATTGGGAATTCGGAGATTTTGGAGGCTTTGTTGAACAAAGGTATATTTTTATGTTAATTTATTAACTTTTAAGAGATTTAGAATCTATTCGGATTGATTTATTTGAGATTATCTATTGGCATGAACAATTGTGAGACTGTTTGGGAGAGGTTTCAGCATATTTCCATAAACTCTTCAGAAGAACTTATGAAAACAACTTATATCTTATATGAAAACAAATTAGACTTAATTTTATCTTCTGTTGTAGAAATAGTTTATACATAAGCATTTATATGATAATCACTTATACTATAAATGCTTCGTTGAACAAAAGACTATTTTTACTTTACTTGATTAACTAATAATAGATTTAGGGTATGTTTGGATTGAGGGTTTGGGGGGAGGGTTTACTTTTCTTTTGAGTTCCAATACAATCTTTGAGTTCCCCTAAATTAGGGAGATTTTGTATTATGAATAAAAATGAACCCCCAAAGCCCTCCCCTCCCAAGGTCCTGTATTCCTTCCACTTGCTCTTTTCATTTCTCTAAAGTCCTCCCCTCTTAAACTCCCAAACAGACCCTTATATTGGCTTATTTTAATTTTTCTATTGGTATAAACATTTGTCAGATTGTTTGGGAGAGCTAATGAAAACAGCCAATGACACGTCCGTAAGCTTTTTTTAGCTTATTTCCATAAGATCTTCAGGATAGCCCGTGAAAACAACTTATAGCTTATATGAAAACAATTATGTTTTGTTATATAAATAACTTATATATAAGCACTTATGCTTTTTATCCAAATAGGGCTTTGTGTCTAGCAGCATCTTCTATTTTTTGTGAACATTAATTGTACTGTCAGCTAAGTGGATAGGTGGTTTATGTGTGTTCCTTGAGTTGAGACTGTTAAATTTGGTACAGTTTAACTTAATTGTAGGACGTCATTTTAAGAAAGGTACATGTGGACTTGTATCAGAAAGCCACAATAATTAGATGAATGGTGCTATTTTATTGTCGTAACAATGATTTTCATACAAACTTCTCAAACATTTAGTTTCACTTTATAGTTGTGTCAAGTGGAATATTTTTTAAACTTTGTTGTGTCCATGTTTCTGTGTTGCATTGTCTTTGTCGTGTTTGTGTTTATATGATCGCCAACTGCCGTTTTCTCTTAATTTTTCTTTCGTATAACTTGATTCAACATCCACAGTTCTTAAAGGTTTACTGATCTAGTAATAAGATGCAATACTAATAACCCATACACTTCATGATTATATTTCATTTGCAATGTAGAAATGAACCATTGACATGGACACACACCTGACACGACACAAATACATAGGCATTTGTAATTGTTAAGACCCAGGGAATTGACTTCAAAGGAAAGTACAATTTTATTGAAATATTAAGAATAAGAGATAGAGAGAATAGGAAAGAAATCTCTCCTCCAAGGGTTTCCCCTTCACGGTAGAGTTACTACTCTGTTCACAATGTTTACAATATTCAATAATGATCAACTCTACACTGTGCTCTCCTAATTATACAAATAGTCCTATAACAACCCAACTAGCCAACAGCCCTATAACAATCCCAACTAGCTAACTAACGAAATTCTGTAAGACTATAACAACTCTTAACTACTTTAACTACTCTAATTGAGCACCTTTCTATACCACTATTCTATATCCTAACAGTAACAATTTGGGAACAAGTGATTGTATGTAATCACAAGTGTCAGTGTCGTGTCGGTGTTGGACATTGACACATGTCGGACAATCCTTCAATCTGAATTGTTAGTGTTATATATGTAGAAAGATTCATCAACCATCTTGAACGTTCTTATTCTTCATTTTTTGTAGGAGCTGATGTTAATATTAAAAACAATGGGGGACGCACTGCCTTACACTATGCAGCCAGCAAAGGTCGGATGAAGATTGCTGAAATACTCATCTCCCATAATGCCAACATTAATATAAAGGACAAGGTTGTAGCATATGGATTCATTTGATATATTTGTGAATTTTGACAATATTGTCTCAATGTTTCCCATTTTCATTATAATCACATTATTACAGATGACATCATATTAATTTAGTGTATATCTTGTAAACTGTAATATGATCAGGTTGGTTCCACCCCGTTGCATCGGGCAGCTAGCACTGGGAATTCTGAGTTGTGTGAACTTTTGATTGAAGAAGGAGCTGATGTTGATGTTGTTGATAGAGCTGGTCAAACTCCTCTAATGAGTGCCGTGATTTGTTATAACAAAGAGGTATGCTATTTTATCTGTACATGTGTTCTTACAATTTTTATCGTAGGAGTAAACTAGTAAAGTGTAGCATTACAACCATTGATTGACCATTAACGGCAGGGATTGTGATTAAGTTAATGTTCATATAATGCAAACAATGAAGTTATTAAAATATTAGCAGTTGATTTTTCAATCAATGGGTATAAACCTTCACTTTCCCCTCAAAGGCGTACTGCTCATTTAAAAAAAAAAAAAAACTATTTAGTTGCACAGTGCTAAGGGTTACCAAAGATTGTGATTTTGTTTTCAACTAAATAATTTTTTTGTTTTAGTCACTTGCACTGGCATGCATTGTCGTAATAAGATGTGAAATAATTTGCTATATGCTGTTGAAAACAAAACCTCTCATGGTTTATAATTCCACCTTGCTATAAACGAAATGCCGATTGAGTATAATTTATCATAATTATATAAATAAATTGATTACAAGTTTTGGAAATATTATATTAAATCATTCATATTAAGCTTTTGGAATAGATGGTTCGTGACATGGTGTTAGATCCTTTATGACCAAGTGGTCTTGAGTTCAATACTTCGATCCTTGCTGCCCCGTGACTTGAAATAAAAGTTGAATTTCAGGTCACATGGCCGAGTGCGTTTGTGCTCTATGCTTCGTGTGTGTGTGGAGACATGTTAGAAATATAATATAAAACAAAAACCATACATATGTCTTTACCTAGCTAAAGCTTTTCAGGTATATGGTTTATGGCATCAAAATATCCCAACAATATTTCTTCACATTATATTCTATCTGAAATCACCATTTACACAACCACAACGTCTCGTCAAAAAGTTTAAGCAAACAGGCTCTTAGAACTTAGAAAGCCTTGGACCATTTCATCCCTCTGTAATATCCTCTTTCAGTAGTCCCAAATGTAGTTTTGCACCAATTTTTCCATCGTTGTTGGGGGCAGACCTACTCATCAGTCAAGGTGCGCCTATGTTGTCGATCACGCCACTTTGGCTTGCAATTGCGGAATTGCAGAGTGACGGCATCTTCTGCGACGAGTTCAGCCGATGAGCCGCATTCAGGAGGCGTGCCACTCATGGTCAAATCGTTAGTTTGAGTCAGCAATCAGGTTAAACACAAGTAATCCCTCGGAAACCTCCGTGTTCTAACCGATCAGTTTCTTTTTTAATCGTATCAATTTTGTTTTGGTTGCTTCATAGTCTCAGTGTTTGCCTAAGATGTGGTATGCACTCGAATTTTGTTCCAAATGCAATCTGGCCCGGCCAGTCTCCCATGTAAAATTATGTTCTTTTTCTGTTGCAACTGTTCCATCTGTAACAGCTTAGTATGCTTAACTTTGGGTAGAATATATGAAAAATATTTGCACACTGTTATATTATCTTAAATATTGTAACAGTTTTCATATTTATTTGTATATTTTGATTTGTTTCCATTTTTAATGAGGGTAAGGGTAGGATTTCAGTATTTTTATTGTCCAACACATCATCTCATCACTTAACTATCAATTCCAGTTTCTATTATTTTGTTTTCCTCGCTCTCCTTGTATACCTAAAGAATGGATTGACAGTATTCCAAAAATAAAATAAAATGGATTGACACGTCTAATGTGTCCTTTACAAGACTCCAGCTTACTGCTTTCTTCTATTTAGTACTTAAAAGGAAGTTCTGCTTAGTAGTTTTAACTTGTAAGACGTTATAGAAGGTTGAAAATGCAGTTGGAGACATGCAACAAATTCCATCATACTGTTTAGTATTCAGAGTATCATATGCTATCTGAAACTTTTAGTTTCAACACCGAGGTGCAAGGGCCAAGGGAAATTATATAATTCTGTAATGTGTATGTACATAGAGTAGATAATAGTCTAAGATGAGAAATATGTTTTGGTAGTTCTGTTATTGGAGTCTTCATAATTTTGGAGCAGCGTACATTGATGTAGTGCATAAAAATCTATTATGTGTTTGGTTTACAGGTAGCACTCCTTCTTATAAGGCATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACGGTGCTTGGTCGAATTACTGACGATGAGTTTAGATCAATATTGATTGATGCTGCCAAGGCCATGCTTGAATGA
Protein sequence

>MS.gene55353.t1

VVKKLLSCDASAEVINSGDEEGWAPVHSAASIGNSEILEALLNKGADVNIKNNGGRTALHYAASKGRMKIAEILISHNANINIKDKVGSTPLHRAASTGNSELCELLIEEGADVDVVDRAGQTPLMSAVICYNKEVALLLIRHGADVDVEDKEGYTVLGRITDDEFRSILIDAAKAMLE