Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008092.t1 | XP_003600847.1 | 100 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 8.30E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008092.t1 | Q9M047 | 80.1 | 201 | 28 | 2 | 1 | 191 | 1 | 199 | 8.7e-91 | 334.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008092.t1 | B7FME7 | 100.0 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 6.0e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008092.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69263 | MS.gene008092 | PPI |
| MS.gene008092 | MS.gene032012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008092.t1 | MTR_3g070050 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.34e-141 | 392 |
| MS.gene008092.t1 | MTR_3g070050 | 98.649 | 148 | 2 | 0 | 44 | 191 | 2 | 149 | 5.89e-106 | 300 |
| MS.gene008092.t1 | MTR_3g070050 | 49.296 | 71 | 36 | 0 | 3 | 73 | 61 | 131 | 7.23e-21 | 84.7 |
| MS.gene008092.t1 | MTR_7g076720 | 62.295 | 183 | 65 | 2 | 1 | 183 | 1 | 179 | 4.67e-85 | 250 |
| MS.gene008092.t1 | MTR_8g031490 | 64.246 | 179 | 58 | 2 | 1 | 179 | 1 | 173 | 3.91e-83 | 245 |
| MS.gene008092.t1 | MTR_8g097300 | 59.563 | 183 | 66 | 1 | 1 | 183 | 1 | 175 | 2.86e-75 | 225 |
| MS.gene008092.t1 | MTR_1g017950 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 2.89e-70 | 212 |
| MS.gene008092.t1 | MTR_4g106800 | 53.591 | 181 | 81 | 2 | 2 | 181 | 3 | 181 | 1.10e-66 | 202 |
| MS.gene008092.t1 | MTR_3g070033 | 100.000 | 69 | 0 | 0 | 123 | 191 | 6 | 74 | 9.18e-45 | 143 |
| MS.gene008092.t1 | MTR_3g070033 | 47.059 | 51 | 27 | 0 | 23 | 73 | 6 | 56 | 5.39e-12 | 59.3 |
| MS.gene008092.t1 | MTR_1g106100 | 43.750 | 112 | 55 | 2 | 59 | 168 | 20 | 125 | 1.85e-24 | 94.0 |
| MS.gene008092.t1 | MTR_1g106100 | 45.455 | 66 | 36 | 0 | 3 | 68 | 60 | 125 | 1.53e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008092.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene008092.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene008092.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene008092.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene008092.t1 | AT2G39900 | 82.609 | 184 | 29 | 2 | 1 | 183 | 1 | 182 | 5.24e-110 | 313 |
| MS.gene008092.t1 | AT2G39900 | 45.455 | 88 | 48 | 0 | 103 | 190 | 3 | 90 | 5.72e-22 | 89.0 |
| MS.gene008092.t1 | AT3G55770 | 70.642 | 218 | 28 | 2 | 1 | 184 | 1 | 216 | 5.31e-105 | 301 |
| MS.gene008092.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 6.73e-22 | 89.4 |
| MS.gene008092.t1 | AT2G45800 | 64.706 | 187 | 62 | 2 | 1 | 187 | 1 | 183 | 1.59e-85 | 251 |
| MS.gene008092.t1 | AT1G01780 | 61.290 | 186 | 66 | 3 | 1 | 186 | 1 | 180 | 6.07e-83 | 244 |
| MS.gene008092.t1 | AT1G01780 | 49.425 | 87 | 44 | 0 | 3 | 89 | 97 | 183 | 1.74e-23 | 92.8 |
| MS.gene008092.t1 | AT3G61230 | 59.890 | 182 | 69 | 2 | 2 | 183 | 3 | 180 | 3.58e-80 | 238 |
| MS.gene008092.t1 | AT1G10200 | 59.322 | 177 | 68 | 2 | 1 | 175 | 1 | 175 | 2.58e-72 | 217 |
| MS.gene008092.t1 | AT3G55770 | 74.074 | 135 | 32 | 2 | 1 | 135 | 1 | 132 | 4.60e-67 | 202 |
| MS.gene008092.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 2.85e-23 | 90.5 |
| MS.gene008092.t1 | AT3G55770 | 72.388 | 134 | 35 | 1 | 1 | 134 | 1 | 132 | 1.02e-64 | 196 |
| MS.gene008092.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 1.72e-23 | 90.9 |
| MS.gene008092.t1 | AT2G45800 | 61.688 | 154 | 54 | 3 | 34 | 187 | 4 | 152 | 9.66e-61 | 187 |
| MS.gene008092.t1 | AT2G45800 | 56.338 | 71 | 31 | 0 | 3 | 73 | 68 | 138 | 2.69e-22 | 89.7 |
| MS.gene008092.t1 | AT1G10200 | 54.135 | 133 | 57 | 2 | 45 | 175 | 3 | 133 | 9.31e-46 | 148 |
| MS.gene008092.t1 | AT1G10200 | 52.778 | 72 | 34 | 0 | 3 | 74 | 61 | 132 | 9.65e-21 | 84.3 |
Find 38 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 3.3:-61310452 | MS.gene008092:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 3.3:+61310476 | None:intergenic |
| GCATAATTTGATGGAGTTAT+AGG | 0.293254 | 3.3:+61307595 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3.3:+61307457 | None:intergenic |
| CTTGAAACATGATTTGTGAT+AGG | 0.385052 | 3.3:+61307636 | None:intergenic |
| GTTGATCAGCTTTCTGCTGA+TGG | 0.412406 | 3.3:-61310508 | MS.gene008092:CDS |
| TCAGCAGAAAGCTGATCAAC+GGG | 0.417066 | 3.3:+61310511 | None:intergenic |
| TCAAATTATGCAGCCCTTGA+GGG | 0.436930 | 3.3:-61307583 | MS.gene008092:CDS |
| TCAAGGGCTGCATAATTTGA+TGG | 0.451254 | 3.3:+61307586 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 3.3:-61310539 | MS.gene008092:CDS |
| GCTTAGCAGCTATTCATCAA+TGG | 0.481021 | 3.3:-61309275 | MS.gene008092:CDS |
| AACATGCCCGCAGCTTTGCT+AGG | 0.502670 | 3.3:+61308930 | None:intergenic |
| TCAAGCAAATTTACCAGCAC+AGG | 0.506130 | 3.3:+61309046 | None:intergenic |
| TGCAATACAAAATGCCCTCA+AGG | 0.513427 | 3.3:+61307569 | None:intergenic |
| ATCAAATTATGCAGCCCTTG+AGG | 0.523435 | 3.3:-61307584 | MS.gene008092:CDS |
| TTAAATCTTACCTTCTCCAA+TGG | 0.527191 | 3.3:+61308861 | None:intergenic |
| TGGCAAAACTGCTTATCCAT+TGG | 0.531481 | 3.3:-61308877 | MS.gene008092:CDS |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3.3:-61307659 | MS.gene008092:intron |
| ACATGCCCGCAGCTTTGCTA+GGG | 0.534302 | 3.3:+61308931 | None:intergenic |
| GAGCAGCTCTTCAAGGAGCA+TGG | 0.538709 | 3.3:-61309223 | MS.gene008092:CDS |
| TTGAAGAGCTGCTCAAAATG+AGG | 0.540372 | 3.3:+61309232 | None:intergenic |
| AGGACCCCTAGCAAAGCTGC+GGG | 0.566248 | 3.3:-61308936 | MS.gene008092:CDS |
| ATCAGCAGAAAGCTGATCAA+CGG | 0.568175 | 3.3:+61310510 | None:intergenic |
| TGACGGTACAACTCCTGTGC+TGG | 0.573159 | 3.3:-61309059 | MS.gene008092:intron |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 3.3:-61310463 | MS.gene008092:CDS |
| AACTGCTTATCCATTGGAGA+AGG | 0.581461 | 3.3:-61308871 | MS.gene008092:intron |
| CATTCAAGATTCTGGAACGG+AGG | 0.593798 | 3.3:+61307465 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+TGG | 0.595518 | 3.3:-61307625 | MS.gene008092:CDS |
| GCAATACAAAATGCCCTCAA+GGG | 0.597362 | 3.3:+61307570 | None:intergenic |
| AAGGACCCCTAGCAAAGCTG+CGG | 0.600940 | 3.3:-61308937 | MS.gene008092:CDS |
| AGCAGCTATTCATCAATGGA+AGG | 0.620240 | 3.3:-61309271 | MS.gene008092:CDS |
| CAAGAAAAGTGTGCTACATG+TGG | 0.644472 | 3.3:-61308897 | MS.gene008092:CDS |
| AACATGATTTGTGATAGGCC+TGG | 0.655676 | 3.3:+61307641 | None:intergenic |
| CAACATTCAAGATTCTGGAA+CGG | 0.669244 | 3.3:+61307462 | None:intergenic |
| TGTTTCAAGTGTTCACATGG+TGG | 0.677869 | 3.3:-61307622 | MS.gene008092:CDS |
| CATGCCCGCAGCTTTGCTAG+GGG | 0.687636 | 3.3:+61308932 | None:intergenic |
| ACAGCTGCAAAGGTAGCTGA+CGG | 0.690921 | 3.3:-61309076 | MS.gene008092:intron |
| CAGCAGAAAGCTGATCAACG+GGG | 0.750219 | 3.3:+61310512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATGTTTATGATAT+TGG | - | chr3.3:61307640-61307659 | MS.gene008092:CDS | 10.0% |
| !!! | TTTTTTATGTTTATGATATT+GGG | - | chr3.3:61307641-61307660 | MS.gene008092:CDS | 10.0% |
| !!! | TTTTTATTGTTCTTTTAATC+CGG | - | chr3.3:61309017-61309036 | MS.gene008092:intron | 15.0% |
| !! | AAAATTATTGCCAATTAAAG+AGG | + | chr3.3:61308930-61308949 | None:intergenic | 20.0% |
| !! | AAACTAAACTTGAAAGATTA+TGG | + | chr3.3:61308200-61308219 | None:intergenic | 20.0% |
| !! | AAGGTAAGATTTAAAAATCT+TGG | - | chr3.3:61309181-61309200 | MS.gene008092:intron | 20.0% |
| !! | ACTAAAGATACTTATTCTTA+TGG | + | chr3.3:61309270-61309289 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3.3:61310267-61310286 | None:intergenic | 20.0% |
| !! | ATATGACTTCATTATCTTAT+TGG | - | chr3.3:61309605-61309624 | MS.gene008092:intron | 20.0% |
| !! | ATGCTATAAGTTGTTTATAT+TGG | - | chr3.3:61308031-61308050 | MS.gene008092:intron | 20.0% |
| !! | TATGACTTCATTATCTTATT+GGG | - | chr3.3:61309606-61309625 | MS.gene008092:intron | 20.0% |
| !!! | AAGTTTAGTTTCTCAAATAT+TGG | - | chr3.3:61308209-61308228 | MS.gene008092:intron | 20.0% |
| !!! | CATATTGATGTTAAATGTTT+TGG | + | chr3.3:61309360-61309379 | None:intergenic | 20.0% |
| !!! | CTTCAATTTCATGTTTTTTA+AGG | + | chr3.3:61309709-61309728 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGAATTTTTCACA+AGG | - | chr3.3:61308708-61308727 | MS.gene008092:intron | 20.0% |
| ! | AAACTTGAAAGATTATGGAT+TGG | + | chr3.3:61308195-61308214 | None:intergenic | 25.0% |
| ! | ACGCTTTCAACAATTTAAAT+AGG | + | chr3.3:61307864-61307883 | None:intergenic | 25.0% |
| ! | AGCTTATACATAAGTGATTA+TGG | + | chr3.3:61308090-61308109 | None:intergenic | 25.0% |
| ! | AGTATATTTAGACATGAAAG+TGG | - | chr3.3:61307789-61307808 | MS.gene008092:intron | 25.0% |
| ! | ATATATCTCATTCTGAATGT+AGG | - | chr3.3:61310356-61310375 | MS.gene008092:intron | 25.0% |
| ! | CTATTAATATCTCCAATTAC+AGG | - | chr3.3:61309876-61309895 | MS.gene008092:intron | 25.0% |
| ! | CTTTAATGACATAGATAGAT+CGG | - | chr3.3:61307836-61307855 | MS.gene008092:intron | 25.0% |
| ! | GAGAATTTATGAAAATGAGT+TGG | - | chr3.3:61308053-61308072 | MS.gene008092:intron | 25.0% |
| ! | GGTATTACTGAATAAACTAA+TGG | - | chr3.3:61309052-61309071 | MS.gene008092:intron | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3.3:61310266-61310285 | None:intergenic | 25.0% |
| ! | GTATATTTAGACATGAAAGT+GGG | - | chr3.3:61307790-61307809 | MS.gene008092:intron | 25.0% |
| ! | TCAGATATATCTGTTACATA+TGG | - | chr3.3:61309229-61309248 | MS.gene008092:CDS | 25.0% |
| ! | TTCACCATCGAAATAAAATT+CGG | - | chr3.3:61307718-61307737 | MS.gene008092:intron | 25.0% |
| !! | ATAAATTTTGTGAGACTGTT+TGG | + | chr3.3:61308301-61308320 | None:intergenic | 25.0% |
| !! | ATAACATAAAGCTTTTTGCT+GGG | - | chr3.3:61309826-61309845 | MS.gene008092:intron | 25.0% |
| !! | ATGTAACATTTTCTCATTTC+AGG | + | chr3.3:61310199-61310218 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGAGACTGTTT+GGG | + | chr3.3:61308300-61308319 | None:intergenic | 25.0% |
| !! | TTATGAAAATGAGTTGAAAG+AGG | - | chr3.3:61308059-61308078 | MS.gene008092:intron | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | - | chr3.3:61308658-61308677 | MS.gene008092:intron | 25.0% |
| !!! | AAATCTAGTTTTTGATCACT+GGG | - | chr3.3:61310003-61310022 | MS.gene008092:intron | 25.0% |
| !!! | AATGTAGGTTTTATCATCTT+TGG | + | chr3.3:61309669-61309688 | None:intergenic | 25.0% |
| !!! | TAAATCTAGTTTTTGATCAC+TGG | - | chr3.3:61310002-61310021 | MS.gene008092:intron | 25.0% |
| !!! | TTATCCGAATTTTATTTCGA+TGG | + | chr3.3:61307725-61307744 | None:intergenic | 25.0% |
| AAAAAGAAGACATACGTGAT+TGG | + | chr3.3:61308860-61308879 | None:intergenic | 30.0% | |
| AACCTAGAAAGATTATGGAT+TGG | + | chr3.3:61308347-61308366 | None:intergenic | 30.0% | |
| AAGCTAACCTAGAAAGATTA+TGG | + | chr3.3:61308352-61308371 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCATAC+AGG | + | chr3.3:61307935-61307954 | None:intergenic | 30.0% | |
| AATTGTTTCATGCTTGCAAT+GGG | + | chr3.3:61309435-61309454 | None:intergenic | 30.0% | |
| CTACATTATGATTCAGTTCA+CGG | - | chr3.3:61309682-61309701 | MS.gene008092:intron | 30.0% | |
| GAATAAACAACTCAACTAAG+TGG | + | chr3.3:61308653-61308672 | None:intergenic | 30.0% | |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3.3:61310441-61310460 | None:intergenic | 30.0% | |
| GCTTAATTGAGCTTATCTAT+TGG | + | chr3.3:61308173-61308192 | None:intergenic | 30.0% | |
| TTAAATCTTACCTTCTCCAA+TGG | + | chr3.3:61309175-61309194 | None:intergenic | 30.0% | |
| TTCAGTAATACCAAATGTCA+AGG | + | chr3.3:61309044-61309063 | None:intergenic | 30.0% | |
| ! | ACATGAAAGTGGGAATTTTA+TGG | - | chr3.3:61307800-61307819 | MS.gene008092:intron | 30.0% |
| ! | ACCAGCAAAGATTTCATTTT+GGG | + | chr3.3:61309804-61309823 | None:intergenic | 30.0% |
| ! | CATAACATAAAGCTTTTTGC+TGG | - | chr3.3:61309825-61309844 | MS.gene008092:intron | 30.0% |
| ! | CATGAAAGTGGGAATTTTAT+GGG | - | chr3.3:61307801-61307820 | MS.gene008092:intron | 30.0% |
| ! | CTTGAAACATGATTTGTGAT+AGG | + | chr3.3:61310400-61310419 | None:intergenic | 30.0% |
| ! | GGATAAGTGATAACTAGTTT+AGG | + | chr3.3:61310147-61310166 | None:intergenic | 30.0% |
| ! | GTATGTCTTCTTTTTCTTCA+AGG | - | chr3.3:61308865-61308884 | MS.gene008092:intron | 30.0% |
| ! | GTTTTATGATTTTGTGGGTT+GGG | + | chr3.3:61309774-61309793 | None:intergenic | 30.0% |
| ! | TAACATTTTCTCATTTCAGG+CGG | + | chr3.3:61310196-61310215 | None:intergenic | 30.0% |
| ! | TACCAGCAAAGATTTCATTT+TGG | + | chr3.3:61309805-61309824 | None:intergenic | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3.3:61310286-61310305 | MS.gene008092:intron | 30.0% |
| ! | TTAAATTGTTGAAAGCGTGT+TGG | - | chr3.3:61307866-61307885 | MS.gene008092:intron | 30.0% |
| !! | ATAAGTTTTGTCAGACTGTT+TGG | + | chr3.3:61308149-61308168 | None:intergenic | 30.0% |
| !! | GAATTTTATTTCGATGGTGA+AGG | + | chr3.3:61307719-61307738 | None:intergenic | 30.0% |
| !! | GTTCGGTTTTATGATTTTGT+GGG | + | chr3.3:61309779-61309798 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTCAGACTGTTT+GGG | + | chr3.3:61308148-61308167 | None:intergenic | 30.0% |
| !! | TGTTCGGTTTTATGATTTTG+TGG | + | chr3.3:61309780-61309799 | None:intergenic | 30.0% |
| !! | TTTTATGATTTTGTGGGTTG+GGG | + | chr3.3:61309773-61309792 | None:intergenic | 30.0% |
| !!! | TTTATTTTGAACAGCTGCAA+AGG | - | chr3.3:61308947-61308966 | MS.gene008092:intron | 30.0% |
| ACACACATGATTGATTGTCA+TGG | + | chr3.3:61308430-61308449 | None:intergenic | 35.0% | |
| AGCCAATCCATAATCTTTCT+AGG | - | chr3.3:61308342-61308361 | MS.gene008092:intron | 35.0% | |
| ATAGCAATGACAGTGTAAGA+GGG | + | chr3.3:61309524-61309543 | None:intergenic | 35.0% | |
| ATATAGCGACAAGAAAACCA+AGG | + | chr3.3:61310330-61310349 | None:intergenic | 35.0% | |
| ATTGTTTCATGCTTGCAATG+GGG | + | chr3.3:61309434-61309453 | None:intergenic | 35.0% | |
| CAATCAGATGCCTCTTTAAT+TGG | - | chr3.3:61308917-61308936 | MS.gene008092:CDS | 35.0% | |
| CAATCATGTGTGTGACTTTA+AGG | - | chr3.3:61308437-61308456 | MS.gene008092:intron | 35.0% | |
| CAATTGTTTCATGCTTGCAA+TGG | + | chr3.3:61309436-61309455 | None:intergenic | 35.0% | |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3.3:61310494-61310513 | None:intergenic | 35.0% | |
| CGTGAACTGAATCATAATGT+AGG | + | chr3.3:61309684-61309703 | None:intergenic | 35.0% | |
| GTCATATCAAAGTCTACTTG+TGG | + | chr3.3:61309592-61309611 | None:intergenic | 35.0% | |
| TAAAATTGCGAGCACAAAGA+AGG | - | chr3.3:61309387-61309406 | MS.gene008092:intron | 35.0% | |
| TAATACCAAATGTCAAGGAC+CGG | + | chr3.3:61309039-61309058 | None:intergenic | 35.0% | |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr3.3:61307581-61307600 | MS.gene008092:CDS | 35.0% | |
| TCCTAATCAATATGCACTTC+AGG | + | chr3.3:61309903-61309922 | None:intergenic | 35.0% | |
| TCTAGTCTACCTTATGTACA+GGG | + | chr3.3:61309301-61309320 | None:intergenic | 35.0% | |
| TCTTCTGTTTATTCCAGACA+AGG | - | chr3.3:61309077-61309096 | MS.gene008092:intron | 35.0% | |
| TTATTACTCCCCTGTACATA+AGG | - | chr3.3:61309289-61309308 | MS.gene008092:intron | 35.0% | |
| TTCGGGCAATTATTGACAAA+TGG | + | chr3.3:61310249-61310268 | None:intergenic | 35.0% | |
| ! | AAGTGGGAATTTTATGGGTA+TGG | - | chr3.3:61307806-61307825 | MS.gene008092:intron | 35.0% |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr3.3:61307487-61307506 | None:intergenic | 35.0% |
| ! | ACCTGAAGTGCATATTGATT+AGG | - | chr3.3:61309899-61309918 | MS.gene008092:intron | 35.0% |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr3.3:61307560-61307579 | None:intergenic | 35.0% |
| ! | CCAGCAAAGATTTCATTTTG+GGG | + | chr3.3:61309803-61309822 | None:intergenic | 35.0% |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3.3:61310491-61310510 | MS.gene008092:CDS | 35.0% |
| ! | TAGTTTTTGATCACTGGGAA+GGG | - | chr3.3:61310008-61310027 | MS.gene008092:intron | 35.0% |
| ! | TCATGTTTCAAGTGTTCACA+TGG | - | chr3.3:61310408-61310427 | MS.gene008092:intron | 35.0% |
| ! | TCTCTAGGAAAACAGTTGTT+TGG | - | chr3.3:61310075-61310094 | MS.gene008092:intron | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3.3:61310499-61310518 | MS.gene008092:CDS | 35.0% |
| !! | GGTTTTATGATTTTGTGGGT+TGG | + | chr3.3:61309775-61309794 | None:intergenic | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3.3:61310498-61310517 | MS.gene008092:CDS | 35.0% |
| !!! | AGATTTCATTTTGGGGTGTT+CGG | + | chr3.3:61309796-61309815 | None:intergenic | 35.0% |
| AACTGCTTATCCATTGGAGA+AGG | - | chr3.3:61309162-61309181 | MS.gene008092:intron | 40.0% | |
| AGCAGCTATTCATCAATGGA+AGG | - | chr3.3:61308762-61308781 | MS.gene008092:intron | 40.0% | |
| ATCAAATTATGCAGCCCTTG+AGG | - | chr3.3:61310449-61310468 | MS.gene008092:intron | 40.0% | |
| ATCAGCAGAAAGCTGATCAA+CGG | + | chr3.3:61307526-61307545 | None:intergenic | 40.0% | |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr3.3:61307494-61307513 | MS.gene008092:CDS | 40.0% | |
| CATAGCAATGACAGTGTAAG+AGG | + | chr3.3:61309525-61309544 | None:intergenic | 40.0% | |
| CCCCAAAATGAAATCTTTGC+TGG | - | chr3.3:61309800-61309819 | MS.gene008092:intron | 40.0% | |
| CTACTGATATGTACGAGTGA+GGG | - | chr3.3:61307909-61307928 | MS.gene008092:intron | 40.0% | |
| CTAGTCTACCTTATGTACAG+GGG | + | chr3.3:61309300-61309319 | None:intergenic | 40.0% | |
| CTCTAGTCTACCTTATGTAC+AGG | + | chr3.3:61309302-61309321 | None:intergenic | 40.0% | |
| CTCTTCAGCCAAATTTGAAC+CGG | - | chr3.3:61310045-61310064 | MS.gene008092:intron | 40.0% | |
| GCAATACAAAATGCCCTCAA+GGG | + | chr3.3:61310466-61310485 | None:intergenic | 40.0% | |
| GCTTAGCAGCTATTCATCAA+TGG | - | chr3.3:61308758-61308777 | MS.gene008092:intron | 40.0% | |
| GGCAAAGTTGTACTTCATAC+AGG | + | chr3.3:61309413-61309432 | None:intergenic | 40.0% | |
| TCAAATTATGCAGCCCTTGA+GGG | - | chr3.3:61310450-61310469 | MS.gene008092:intron | 40.0% | |
| TCAAGCAAATTTACCAGCAC+AGG | + | chr3.3:61308990-61309009 | None:intergenic | 40.0% | |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3.3:61310450-61310469 | None:intergenic | 40.0% | |
| TCTACTGATATGTACGAGTG+AGG | - | chr3.3:61307908-61307927 | MS.gene008092:intron | 40.0% | |
| TCTTCAGCCAAATTTGAACC+GGG | - | chr3.3:61310046-61310065 | MS.gene008092:intron | 40.0% | |
| TGCAATACAAAATGCCCTCA+AGG | + | chr3.3:61310467-61310486 | None:intergenic | 40.0% | |
| TGGCAAAACTGCTTATCCAT+TGG | - | chr3.3:61309156-61309175 | MS.gene008092:intron | 40.0% | |
| TGGTACCCAACAAAAATGCA+AGG | - | chr3.3:61307479-61307498 | MS.gene008092:CDS | 40.0% | |
| TTAATCCGGTCCTTGACATT+TGG | - | chr3.3:61309031-61309050 | MS.gene008092:intron | 40.0% | |
| TTGAAGAGCTGCTCAAAATG+AGG | + | chr3.3:61308804-61308823 | None:intergenic | 40.0% | |
| ! | AACATGATTTGTGATAGGCC+TGG | + | chr3.3:61310395-61310414 | None:intergenic | 40.0% |
| ! | ACGCAGCAGATTCTACATTT+TGG | + | chr3.3:61310226-61310245 | None:intergenic | 40.0% |
| ! | CAAGAAAAGTGTGCTACATG+TGG | - | chr3.3:61309136-61309155 | MS.gene008092:intron | 40.0% |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr3.3:61307488-61307507 | None:intergenic | 40.0% |
| ! | CATAAAGCTTTTTGCTGGGT+TGG | - | chr3.3:61309830-61309849 | MS.gene008092:intron | 40.0% |
| ! | GTTTGGTTCAAGTTAGCGAA+AGG | - | chr3.3:61310092-61310111 | MS.gene008092:intron | 40.0% |
| ! | TCATTTTGAGCAGCTCTTCA+AGG | - | chr3.3:61308803-61308822 | MS.gene008092:intron | 40.0% |
| ! | TGTTTCAAGTGTTCACATGG+TGG | - | chr3.3:61310411-61310430 | MS.gene008092:intron | 40.0% |
| ! | TTAGTGCGACCTTTTGCTTT+TGG | - | chr3.3:61309457-61309476 | MS.gene008092:intron | 40.0% |
| ! | TTGTTGAAAGCGTGTTGGAT+CGG | - | chr3.3:61307871-61307890 | MS.gene008092:intron | 40.0% |
| !! | AAACCAAGGCATTCTAGTTC+AGG | + | chr3.3:61310316-61310335 | None:intergenic | 40.0% |
| !! | AACCAAGGCATTCTAGTTCA+GGG | + | chr3.3:61310315-61310334 | None:intergenic | 40.0% |
| !! | CTAGTTTTTGATCACTGGGA+AGG | - | chr3.3:61310007-61310026 | MS.gene008092:intron | 40.0% |
| !! | TAGTGCGACCTTTTGCTTTT+GGG | - | chr3.3:61309458-61309477 | MS.gene008092:intron | 40.0% |
| !! | TTTGCTGGGTTGGTTTAAAC+TGG | - | chr3.3:61309840-61309859 | MS.gene008092:intron | 40.0% |
| AACTAGCCCCGGTTCAAATT+TGG | + | chr3.3:61310056-61310075 | None:intergenic | 45.0% | |
| ACATACCATACAGCCAGAGA+AGG | + | chr3.3:61309331-61309350 | None:intergenic | 45.0% | |
| CTTCAGCCAAATTTGAACCG+GGG | - | chr3.3:61310047-61310066 | MS.gene008092:intron | 45.0% | |
| GTTGATCAGCTTTCTGCTGA+TGG | - | chr3.3:61307525-61307544 | MS.gene008092:CDS | 45.0% | |
| TACCCTGAACTAGAATGCCT+TGG | - | chr3.3:61310310-61310329 | MS.gene008092:intron | 45.0% | |
| TCAGCAGAAAGCTGATCAAC+GGG | + | chr3.3:61307525-61307544 | None:intergenic | 45.0% | |
| TGCACTTCAGGTCCTGTAAT+TGG | + | chr3.3:61309891-61309910 | None:intergenic | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr3.3:61307570-61307589 | MS.gene008092:CDS | 45.0% | |
| ! | ACTAGAGTATCCTCCTTCTC+TGG | - | chr3.3:61309315-61309334 | MS.gene008092:intron | 45.0% |
| ! | TTTTCCTAGAGAACTAGCCC+CGG | + | chr3.3:61310067-61310086 | None:intergenic | 45.0% |
| !! | AGTGCGACCTTTTGCTTTTG+GGG | - | chr3.3:61309459-61309478 | MS.gene008092:intron | 45.0% |
| !! | ATAAATTAGTTAATAATATT+TGG | - | chr3.3:61309206-61309225 | MS.gene008092:CDS | 5.0% |
| ACAGCTGCAAAGGTAGCTGA+CGG | - | chr3.3:61308957-61308976 | MS.gene008092:intron | 50.0% | |
| ATCCTCCTTCTCTGGCTGTA+TGG | - | chr3.3:61309323-61309342 | MS.gene008092:intron | 50.0% | |
| CAGCAGAAAGCTGATCAACG+GGG | + | chr3.3:61307524-61307543 | None:intergenic | 50.0% | |
| CCAGTCTGCACTCCAATAAG+AGG | - | chr3.3:61310165-61310184 | MS.gene008092:intron | 50.0% | |
| CCTCTTATTGGAGTGCAGAC+TGG | + | chr3.3:61310168-61310187 | None:intergenic | 50.0% | |
| GGCAGCGTCAATCATAAGCA+AGG | + | chr3.3:61307698-61307717 | None:intergenic | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3.3:61310374-61310393 | MS.gene008092:intron | 50.0% | |
| TACCATACAGCCAGAGAAGG+AGG | + | chr3.3:61309328-61309347 | None:intergenic | 50.0% | |
| TGAACGCCCCCAAAAGCAAA+AGG | + | chr3.3:61309469-61309488 | None:intergenic | 50.0% | |
| ! | AAAGCTGCGGGCATGTTTTC+TGG | - | chr3.3:61309109-61309128 | MS.gene008092:intron | 50.0% |
| ! | AAGCTGCGGGCATGTTTTCT+GGG | - | chr3.3:61309110-61309129 | MS.gene008092:intron | 50.0% |
| !! | GTGCGACCTTTTGCTTTTGG+GGG | - | chr3.3:61309460-61309479 | MS.gene008092:intron | 50.0% |
| !!! | TTGCTTTTGGGGGCGTTCAT+TGG | - | chr3.3:61309470-61309489 | MS.gene008092:intron | 50.0% |
| AACATGCCCGCAGCTTTGCT+AGG | + | chr3.3:61309106-61309125 | None:intergenic | 55.0% | |
| AAGGACCCCTAGCAAAGCTG+CGG | - | chr3.3:61309096-61309115 | MS.gene008092:intron | 55.0% | |
| ACATGCCCGCAGCTTTGCTA+GGG | + | chr3.3:61309105-61309124 | None:intergenic | 55.0% | |
| CAGGCGGTCTAGCCTCTTAT+TGG | + | chr3.3:61310180-61310199 | None:intergenic | 55.0% | |
| CTTTGCTAGGGGTCCTTGTC+TGG | + | chr3.3:61309093-61309112 | None:intergenic | 55.0% | |
| GAGCAGCTCTTCAAGGAGCA+TGG | - | chr3.3:61308810-61308829 | MS.gene008092:intron | 55.0% | |
| TGACGGTACAACTCCTGTGC+TGG | - | chr3.3:61308974-61308993 | MS.gene008092:intron | 55.0% | |
| TGTACGAGTGAGGGCCTGTA+TGG | - | chr3.3:61307918-61307937 | MS.gene008092:intron | 55.0% | |
| !! | TGAACCGGGGCTAGTTCTCT+AGG | - | chr3.3:61310060-61310079 | MS.gene008092:intron | 55.0% |
| AGGACCCCTAGCAAAGCTGC+GGG | - | chr3.3:61309097-61309116 | MS.gene008092:intron | 60.0% | |
| CATGCCCGCAGCTTTGCTAG+GGG | + | chr3.3:61309104-61309123 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 61307468 | 61310587 | 61307468 | ID=MS.gene008092 |
| chr3.3 | mRNA | 61307468 | 61310587 | 61307468 | ID=MS.gene008092.t1;Parent=MS.gene008092 |
| chr3.3 | exon | 61310453 | 61310587 | 61310453 | ID=MS.gene008092.t1.exon1;Parent=MS.gene008092.t1 |
| chr3.3 | CDS | 61310453 | 61310587 | 61310453 | ID=cds.MS.gene008092.t1;Parent=MS.gene008092.t1 |
| chr3.3 | exon | 61309191 | 61309296 | 61309191 | ID=MS.gene008092.t1.exon2;Parent=MS.gene008092.t1 |
| chr3.3 | CDS | 61309191 | 61309296 | 61309191 | ID=cds.MS.gene008092.t1;Parent=MS.gene008092.t1 |
| chr3.3 | exon | 61309060 | 61309094 | 61309060 | ID=MS.gene008092.t1.exon3;Parent=MS.gene008092.t1 |
| chr3.3 | CDS | 61309060 | 61309094 | 61309060 | ID=cds.MS.gene008092.t1;Parent=MS.gene008092.t1 |
| chr3.3 | exon | 61308872 | 61308961 | 61308872 | ID=MS.gene008092.t1.exon4;Parent=MS.gene008092.t1 |
| chr3.3 | CDS | 61308872 | 61308961 | 61308872 | ID=cds.MS.gene008092.t1;Parent=MS.gene008092.t1 |
| chr3.3 | exon | 61307468 | 61307677 | 61307468 | ID=MS.gene008092.t1.exon5;Parent=MS.gene008092.t1 |
| chr3.3 | CDS | 61307468 | 61307677 | 61307468 | ID=cds.MS.gene008092.t1;Parent=MS.gene008092.t1 |
| Gene Sequence |
| Protein sequence |
