Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69263.t1 | XP_003600847.1 | 100 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 8.30E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69263.t1 | Q9M047 | 80.1 | 201 | 28 | 2 | 1 | 191 | 1 | 199 | 8.7e-91 | 334.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69263.t1 | B7FME7 | 100.0 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 6.0e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69263.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69263 | MS.gene008092 | PPI |
| MS.gene69263 | MS.gene032012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69263.t1 | MTR_3g070050 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.34e-141 | 392 |
| MS.gene69263.t1 | MTR_3g070050 | 98.649 | 148 | 2 | 0 | 44 | 191 | 2 | 149 | 5.89e-106 | 300 |
| MS.gene69263.t1 | MTR_3g070050 | 49.296 | 71 | 36 | 0 | 3 | 73 | 61 | 131 | 7.23e-21 | 84.7 |
| MS.gene69263.t1 | MTR_7g076720 | 62.295 | 183 | 65 | 2 | 1 | 183 | 1 | 179 | 4.67e-85 | 250 |
| MS.gene69263.t1 | MTR_8g031490 | 64.246 | 179 | 58 | 2 | 1 | 179 | 1 | 173 | 3.91e-83 | 245 |
| MS.gene69263.t1 | MTR_8g097300 | 59.563 | 183 | 66 | 1 | 1 | 183 | 1 | 175 | 2.86e-75 | 225 |
| MS.gene69263.t1 | MTR_1g017950 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 2.89e-70 | 212 |
| MS.gene69263.t1 | MTR_4g106800 | 53.591 | 181 | 81 | 2 | 2 | 181 | 3 | 181 | 1.10e-66 | 202 |
| MS.gene69263.t1 | MTR_3g070033 | 100.000 | 69 | 0 | 0 | 123 | 191 | 6 | 74 | 9.18e-45 | 143 |
| MS.gene69263.t1 | MTR_3g070033 | 47.059 | 51 | 27 | 0 | 23 | 73 | 6 | 56 | 5.39e-12 | 59.3 |
| MS.gene69263.t1 | MTR_1g106100 | 43.750 | 112 | 55 | 2 | 59 | 168 | 20 | 125 | 1.85e-24 | 94.0 |
| MS.gene69263.t1 | MTR_1g106100 | 45.455 | 66 | 36 | 0 | 3 | 68 | 60 | 125 | 1.53e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69263.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene69263.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene69263.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene69263.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene69263.t1 | AT2G39900 | 82.609 | 184 | 29 | 2 | 1 | 183 | 1 | 182 | 5.24e-110 | 313 |
| MS.gene69263.t1 | AT2G39900 | 45.455 | 88 | 48 | 0 | 103 | 190 | 3 | 90 | 5.72e-22 | 89.0 |
| MS.gene69263.t1 | AT3G55770 | 70.642 | 218 | 28 | 2 | 1 | 184 | 1 | 216 | 5.31e-105 | 301 |
| MS.gene69263.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 6.73e-22 | 89.4 |
| MS.gene69263.t1 | AT2G45800 | 64.706 | 187 | 62 | 2 | 1 | 187 | 1 | 183 | 1.59e-85 | 251 |
| MS.gene69263.t1 | AT1G01780 | 61.290 | 186 | 66 | 3 | 1 | 186 | 1 | 180 | 6.07e-83 | 244 |
| MS.gene69263.t1 | AT1G01780 | 49.425 | 87 | 44 | 0 | 3 | 89 | 97 | 183 | 1.74e-23 | 92.8 |
| MS.gene69263.t1 | AT3G61230 | 59.890 | 182 | 69 | 2 | 2 | 183 | 3 | 180 | 3.58e-80 | 238 |
| MS.gene69263.t1 | AT1G10200 | 59.322 | 177 | 68 | 2 | 1 | 175 | 1 | 175 | 2.58e-72 | 217 |
| MS.gene69263.t1 | AT3G55770 | 74.074 | 135 | 32 | 2 | 1 | 135 | 1 | 132 | 4.60e-67 | 202 |
| MS.gene69263.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 2.85e-23 | 90.5 |
| MS.gene69263.t1 | AT3G55770 | 72.388 | 134 | 35 | 1 | 1 | 134 | 1 | 132 | 1.02e-64 | 196 |
| MS.gene69263.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 1.72e-23 | 90.9 |
| MS.gene69263.t1 | AT2G45800 | 61.688 | 154 | 54 | 3 | 34 | 187 | 4 | 152 | 9.66e-61 | 187 |
| MS.gene69263.t1 | AT2G45800 | 56.338 | 71 | 31 | 0 | 3 | 73 | 68 | 138 | 2.69e-22 | 89.7 |
| MS.gene69263.t1 | AT1G10200 | 54.135 | 133 | 57 | 2 | 45 | 175 | 3 | 133 | 9.31e-46 | 148 |
| MS.gene69263.t1 | AT1G10200 | 52.778 | 72 | 34 | 0 | 3 | 74 | 61 | 132 | 9.65e-21 | 84.3 |
Find 39 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 3.2:-63823925 | MS.gene69263:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 3.2:+63823949 | None:intergenic |
| GCATAATTTGATGGAGTTAT+AGG | 0.293254 | 3.2:+63821043 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3.2:+63820905 | None:intergenic |
| CTTGAAACATGATTTGTGAT+AGG | 0.385052 | 3.2:+63821084 | None:intergenic |
| GTTGATCAGCTTTCTGCTGA+TGG | 0.412406 | 3.2:-63823981 | MS.gene69263:CDS |
| TCAGCAGAAAGCTGATCAAC+GGG | 0.417066 | 3.2:+63823984 | None:intergenic |
| TCAAATTATGCAGCCCTTGA+GGG | 0.436930 | 3.2:-63821031 | MS.gene69263:CDS |
| TCAAGGGCTGCATAATTTGA+TGG | 0.451254 | 3.2:+63821034 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 3.2:-63824012 | MS.gene69263:CDS |
| GCTTAGCAGCTATTCATCAA+TGG | 0.481021 | 3.2:-63822724 | MS.gene69263:CDS |
| AACATGCCCGCAGCTTTGCT+AGG | 0.502670 | 3.2:+63822379 | None:intergenic |
| TCAAGCAAATTTACCAGCAC+AGG | 0.506130 | 3.2:+63822495 | None:intergenic |
| TGCAATATAAAATGCCCTCA+AGG | 0.507301 | 3.2:+63821017 | None:intergenic |
| ATCAAATTATGCAGCCCTTG+AGG | 0.523435 | 3.2:-63821032 | MS.gene69263:CDS |
| TTAAATCTTACCTTCTCCAA+TGG | 0.527191 | 3.2:+63822310 | None:intergenic |
| TGGCAAAACTGCTTATCCAT+TGG | 0.531481 | 3.2:-63822326 | MS.gene69263:CDS |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3.2:-63821107 | MS.gene69263:intron |
| ACATGCCCGCAGCTTTGCTA+GGG | 0.534302 | 3.2:+63822380 | None:intergenic |
| GAGCAGCTCTTCAAGGAGCA+TGG | 0.538709 | 3.2:-63822672 | MS.gene69263:CDS |
| TTGAAGAGCTGCTCAAAATG+AGG | 0.540372 | 3.2:+63822681 | None:intergenic |
| AGGACCCCTAGCAAAGCTGC+GGG | 0.566248 | 3.2:-63822385 | MS.gene69263:CDS |
| ATCAGCAGAAAGCTGATCAA+CGG | 0.568175 | 3.2:+63823983 | None:intergenic |
| TGACGGTACAACTCCTGTGC+TGG | 0.573159 | 3.2:-63822508 | MS.gene69263:intron |
| GCAATATAAAATGCCCTCAA+GGG | 0.578418 | 3.2:+63821018 | None:intergenic |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 3.2:-63823936 | MS.gene69263:CDS |
| AACTGCTTATCCATTGGAGA+AGG | 0.581461 | 3.2:-63822320 | MS.gene69263:intron |
| CATTCAAGATTCTGGAACGG+AGG | 0.593798 | 3.2:+63820913 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+TGG | 0.595518 | 3.2:-63821073 | MS.gene69263:CDS |
| AAGGACCCCTAGCAAAGCTG+CGG | 0.600940 | 3.2:-63822386 | MS.gene69263:CDS |
| TTGGGTACCAATAAAAGACA+TGG | 0.604189 | 3.2:+63824040 | None:intergenic |
| AGCAGCTATTCATCAATGGA+AGG | 0.620240 | 3.2:-63822720 | MS.gene69263:CDS |
| CAAGAAAAGTGTGCTACATG+TGG | 0.644472 | 3.2:-63822346 | MS.gene69263:CDS |
| AACATGATTTGTGATAGGCC+TGG | 0.655676 | 3.2:+63821089 | None:intergenic |
| CAACATTCAAGATTCTGGAA+CGG | 0.669244 | 3.2:+63820910 | None:intergenic |
| TGTTTCAAGTGTTCACATGG+TGG | 0.677869 | 3.2:-63821070 | MS.gene69263:CDS |
| CATGCCCGCAGCTTTGCTAG+GGG | 0.687636 | 3.2:+63822381 | None:intergenic |
| ACAGCTGCAAAGGTAGCTGA+CGG | 0.690921 | 3.2:-63822525 | MS.gene69263:intron |
| CAGCAGAAAGCTGATCAACG+GGG | 0.750219 | 3.2:+63823985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATGTTTATGATAT+TGG | - | chr3.2:63821110-63821129 | MS.gene69263:intron | 10.0% |
| !!! | TTTTTATTGTTCTTTTAATC+CGG | - | chr3.2:63822489-63822508 | MS.gene69263:intron | 15.0% |
| !! | AAAATTATTGCCAATTAAAG+AGG | + | chr3.2:63822402-63822421 | None:intergenic | 20.0% |
| !! | AAACTAAACTTGAAAGATTA+TGG | + | chr3.2:63821672-63821691 | None:intergenic | 20.0% |
| !! | AAGGTAAGATTTAAAAATCT+TGG | - | chr3.2:63822653-63822672 | MS.gene69263:CDS | 20.0% |
| !! | ACTAAAGATACTTATTCTTA+TGG | + | chr3.2:63822742-63822761 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3.2:63823740-63823759 | None:intergenic | 20.0% |
| !! | ATATGACTTCATTATCTTAT+TGG | - | chr3.2:63823077-63823096 | MS.gene69263:intron | 20.0% |
| !! | ATATTTAGACATATGAAAGT+GGG | - | chr3.2:63821262-63821281 | MS.gene69263:intron | 20.0% |
| !! | TATATTTAGACATATGAAAG+TGG | - | chr3.2:63821261-63821280 | MS.gene69263:intron | 20.0% |
| !! | TATGACTTCATTATCTTATT+GGG | - | chr3.2:63823078-63823097 | MS.gene69263:intron | 20.0% |
| !!! | AAGTTTAGTTTCTCAAATAT+TGG | - | chr3.2:63821681-63821700 | MS.gene69263:intron | 20.0% |
| !!! | CATATTGATGTTAAATGTTT+TGG | + | chr3.2:63822832-63822851 | None:intergenic | 20.0% |
| !!! | CTTCAATTTCATGTTTTTTA+AGG | + | chr3.2:63823183-63823202 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGAATTTTTCACA+AGG | - | chr3.2:63822180-63822199 | MS.gene69263:intron | 20.0% |
| ! | AAACTTGAAAGATTATGGAT+TGG | + | chr3.2:63821667-63821686 | None:intergenic | 25.0% |
| ! | ACGCTTTCAACAATTTAAAT+AGG | + | chr3.2:63821336-63821355 | None:intergenic | 25.0% |
| ! | AGATTAAAAAAAGCTCTCAT+TGG | + | chr3.2:63821214-63821233 | None:intergenic | 25.0% |
| ! | AGCTTATACATAAGTGATTA+TGG | + | chr3.2:63821562-63821581 | None:intergenic | 25.0% |
| ! | ATATATCTCATTCTGAATGT+AGG | - | chr3.2:63823829-63823848 | MS.gene69263:intron | 25.0% |
| ! | GAGAATTTATGAAAATGAGT+TGG | - | chr3.2:63821525-63821544 | MS.gene69263:intron | 25.0% |
| ! | GGTATTACTGAATAAACTAA+TGG | - | chr3.2:63822524-63822543 | MS.gene69263:CDS | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3.2:63823739-63823758 | None:intergenic | 25.0% |
| ! | TCAGATATATCTGTTACATA+TGG | - | chr3.2:63822701-63822720 | MS.gene69263:CDS | 25.0% |
| ! | TCTATTAATATCTCCAATAC+AGG | - | chr3.2:63823349-63823368 | MS.gene69263:intron | 25.0% |
| !! | ATAAATTTTGTGAGACTGTT+TGG | + | chr3.2:63821773-63821792 | None:intergenic | 25.0% |
| !! | ATAACATAAAGCTTTTTGCT+GGG | - | chr3.2:63823300-63823319 | MS.gene69263:intron | 25.0% |
| !! | ATATGAAAGTGGGAATTTTA+TGG | - | chr3.2:63821272-63821291 | MS.gene69263:intron | 25.0% |
| !! | ATGTAACATTTTCTCATTTC+AGG | + | chr3.2:63823672-63823691 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGAGACTGTTT+GGG | + | chr3.2:63821772-63821791 | None:intergenic | 25.0% |
| !! | TATGAAAGTGGGAATTTTAT+GGG | - | chr3.2:63821273-63821292 | MS.gene69263:intron | 25.0% |
| !! | TCATTGGAATTTTACATGAA+TGG | + | chr3.2:63821198-63821217 | None:intergenic | 25.0% |
| !! | TTATGAAAATGAGTTGAAAG+AGG | - | chr3.2:63821531-63821550 | MS.gene69263:intron | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | - | chr3.2:63822130-63822149 | MS.gene69263:intron | 25.0% |
| !!! | AAATCTAGTTTTTGATCACT+GGG | - | chr3.2:63823476-63823495 | MS.gene69263:intron | 25.0% |
| !!! | AATGTAGGTTTTATCATCTT+TGG | + | chr3.2:63823143-63823162 | None:intergenic | 25.0% |
| !!! | GAGCTTTTTTTAATCTAAGT+TGG | - | chr3.2:63821218-63821237 | MS.gene69263:intron | 25.0% |
| !!! | TAAATCTAGTTTTTGATCAC+TGG | - | chr3.2:63823475-63823494 | MS.gene69263:intron | 25.0% |
| AAAAAGAAGACATACGTGAT+TGG | + | chr3.2:63822332-63822351 | None:intergenic | 30.0% | |
| AACCTAGAAAGATTATGGAT+TGG | + | chr3.2:63821819-63821838 | None:intergenic | 30.0% | |
| AAGCTAACCTAGAAAGATTA+TGG | + | chr3.2:63821824-63821843 | None:intergenic | 30.0% | |
| AATTGTTTCATGCTTGCAAT+GGG | + | chr3.2:63822907-63822926 | None:intergenic | 30.0% | |
| CATGAACTGAATCATAATGT+AGG | + | chr3.2:63823158-63823177 | None:intergenic | 30.0% | |
| CTACATTATGATTCAGTTCA+TGG | - | chr3.2:63823156-63823175 | MS.gene69263:intron | 30.0% | |
| GAATAAACAACTCAACTAAG+TGG | + | chr3.2:63822125-63822144 | None:intergenic | 30.0% | |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3.2:63823914-63823933 | None:intergenic | 30.0% | |
| GCTTAATTGAGCTTATCTAT+TGG | + | chr3.2:63821645-63821664 | None:intergenic | 30.0% | |
| TGCAGCAAGTAAAAAAATGA+AGG | + | chr3.2:63821065-63821084 | None:intergenic | 30.0% | |
| TTAAATCTTACCTTCTCCAA+TGG | + | chr3.2:63822647-63822666 | None:intergenic | 30.0% | |
| TTCAGTAATACCAAATGTCA+AGG | + | chr3.2:63822516-63822535 | None:intergenic | 30.0% | |
| ! | ACCAGCAAAGATTTCATTTT+GGG | + | chr3.2:63823278-63823297 | None:intergenic | 30.0% |
| ! | CATAACATAAAGCTTTTTGC+TGG | - | chr3.2:63823299-63823318 | MS.gene69263:intron | 30.0% |
| ! | CTTGAAACATGATTTGTGAT+AGG | + | chr3.2:63823873-63823892 | None:intergenic | 30.0% |
| ! | GGATAAGTGATAACTAGTTT+AGG | + | chr3.2:63823620-63823639 | None:intergenic | 30.0% |
| ! | GTATGTCTTCTTTTTCTTCA+AGG | - | chr3.2:63822337-63822356 | MS.gene69263:CDS | 30.0% |
| ! | GTTTTATGATTTTGTGGGTT+GGG | + | chr3.2:63823248-63823267 | None:intergenic | 30.0% |
| ! | TAACATTTTCTCATTTCAGG+TGG | + | chr3.2:63823669-63823688 | None:intergenic | 30.0% |
| ! | TACCAGCAAAGATTTCATTT+TGG | + | chr3.2:63823279-63823298 | None:intergenic | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3.2:63823759-63823778 | MS.gene69263:intron | 30.0% |
| ! | TTAAATTGTTGAAAGCGTGT+TGG | - | chr3.2:63821338-63821357 | MS.gene69263:intron | 30.0% |
| ! | TTGGAATTTTACATGAATGG+CGG | + | chr3.2:63821195-63821214 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTCAGACTGTT+TGG | + | chr3.2:63821621-63821640 | None:intergenic | 30.0% |
| !! | GTTCGGTTTTATGATTTTGT+GGG | + | chr3.2:63823253-63823272 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTCAGACTGTTT+GGG | + | chr3.2:63821620-63821639 | None:intergenic | 30.0% |
| !! | TGTTCGGTTTTATGATTTTG+TGG | + | chr3.2:63823254-63823273 | None:intergenic | 30.0% |
| !! | TTTTATGATTTTGTGGGTTG+GGG | + | chr3.2:63823247-63823266 | None:intergenic | 30.0% |
| !!! | TTTATTTTGAACAGCTGCAA+AGG | - | chr3.2:63822419-63822438 | MS.gene69263:intron | 30.0% |
| AGCCAATCCATAATCTTTCT+AGG | - | chr3.2:63821814-63821833 | MS.gene69263:intron | 35.0% | |
| ATAGCAATGACAGTGTAAGA+GGG | + | chr3.2:63822996-63823015 | None:intergenic | 35.0% | |
| ATATAGCGACAAGAAAACCA+AGG | + | chr3.2:63823803-63823822 | None:intergenic | 35.0% | |
| ATTGTTTCATGCTTGCAATG+GGG | + | chr3.2:63822906-63822925 | None:intergenic | 35.0% | |
| CAATCAGATGCCTCTTTAAT+TGG | - | chr3.2:63822389-63822408 | MS.gene69263:CDS | 35.0% | |
| CAATCATGTGTGTGACTTTA+AGG | - | chr3.2:63821909-63821928 | MS.gene69263:intron | 35.0% | |
| CAATTGTTTCATGCTTGCAA+TGG | + | chr3.2:63822908-63822927 | None:intergenic | 35.0% | |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3.2:63823967-63823986 | None:intergenic | 35.0% | |
| GCAATATAAAATGCCCTCAA+GGG | + | chr3.2:63823939-63823958 | None:intergenic | 35.0% | |
| GTCATATCAAAGTCTACTTG+TGG | + | chr3.2:63823064-63823083 | None:intergenic | 35.0% | |
| TAAAATTGCGAGCACAAAGA+AGG | - | chr3.2:63822859-63822878 | MS.gene69263:intron | 35.0% | |
| TAATACCAAATGTCAAGGAC+CGG | + | chr3.2:63822511-63822530 | None:intergenic | 35.0% | |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr3.2:63821029-63821048 | MS.gene69263:CDS | 35.0% | |
| TCCTAATCAATATGCACTTC+AGG | + | chr3.2:63823376-63823395 | None:intergenic | 35.0% | |
| TCTAGTCTACCTTATGTACA+GGG | + | chr3.2:63822773-63822792 | None:intergenic | 35.0% | |
| TCTTCTGTTTATTCCAGACA+AGG | - | chr3.2:63822549-63822568 | MS.gene69263:intron | 35.0% | |
| TGCAATATAAAATGCCCTCA+AGG | + | chr3.2:63823940-63823959 | None:intergenic | 35.0% | |
| TTATTACTCCCCTGTACATA+AGG | - | chr3.2:63822761-63822780 | MS.gene69263:intron | 35.0% | |
| TTCGGGCAATTATTGACAAA+TGG | + | chr3.2:63823722-63823741 | None:intergenic | 35.0% | |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr3.2:63820935-63820954 | None:intergenic | 35.0% |
| ! | ACCTGAAGTGCATATTGATT+AGG | - | chr3.2:63823372-63823391 | MS.gene69263:intron | 35.0% |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr3.2:63821008-63821027 | None:intergenic | 35.0% |
| ! | CCAGCAAAGATTTCATTTTG+GGG | + | chr3.2:63823277-63823296 | None:intergenic | 35.0% |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3.2:63823964-63823983 | MS.gene69263:CDS | 35.0% |
| ! | TAGTTTTTGATCACTGGGAA+GGG | - | chr3.2:63823481-63823500 | MS.gene69263:intron | 35.0% |
| ! | TCATGTTTCAAGTGTTCACA+TGG | - | chr3.2:63823881-63823900 | MS.gene69263:intron | 35.0% |
| ! | TCTCTAGGAAAACAGTTGTT+TGG | - | chr3.2:63823548-63823567 | MS.gene69263:intron | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3.2:63823972-63823991 | MS.gene69263:CDS | 35.0% |
| !! | GGTTTTATGATTTTGTGGGT+TGG | + | chr3.2:63823249-63823268 | None:intergenic | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3.2:63823971-63823990 | MS.gene69263:CDS | 35.0% |
| !!! | AGATTTCATTTTGGGGTGTT+CGG | + | chr3.2:63823270-63823289 | None:intergenic | 35.0% |
| AACTGCTTATCCATTGGAGA+AGG | - | chr3.2:63822634-63822653 | MS.gene69263:intron | 40.0% | |
| ACACACATGATTGACTGTCA+TGG | + | chr3.2:63821902-63821921 | None:intergenic | 40.0% | |
| AGCAGCTATTCATCAATGGA+AGG | - | chr3.2:63822234-63822253 | MS.gene69263:intron | 40.0% | |
| ATCAAATTATGCAGCCCTTG+AGG | - | chr3.2:63823922-63823941 | MS.gene69263:intron | 40.0% | |
| ATCAGCAGAAAGCTGATCAA+CGG | + | chr3.2:63820974-63820993 | None:intergenic | 40.0% | |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr3.2:63820942-63820961 | MS.gene69263:CDS | 40.0% | |
| CATAGCAATGACAGTGTAAG+AGG | + | chr3.2:63822997-63823016 | None:intergenic | 40.0% | |
| CCCCAAAATGAAATCTTTGC+TGG | - | chr3.2:63823274-63823293 | MS.gene69263:intron | 40.0% | |
| CTAGTCTACCTTATGTACAG+GGG | + | chr3.2:63822772-63822791 | None:intergenic | 40.0% | |
| CTCTAGTCTACCTTATGTAC+AGG | + | chr3.2:63822774-63822793 | None:intergenic | 40.0% | |
| GCTTAGCAGCTATTCATCAA+TGG | - | chr3.2:63822230-63822249 | MS.gene69263:intron | 40.0% | |
| GGCAAAGTTGTACTTCATAC+AGG | + | chr3.2:63822885-63822904 | None:intergenic | 40.0% | |
| TCAAATTATGCAGCCCTTGA+GGG | - | chr3.2:63823923-63823942 | MS.gene69263:intron | 40.0% | |
| TCAAGCAAATTTACCAGCAC+AGG | + | chr3.2:63822462-63822481 | None:intergenic | 40.0% | |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3.2:63823923-63823942 | None:intergenic | 40.0% | |
| TGGCAAAACTGCTTATCCAT+TGG | - | chr3.2:63822628-63822647 | MS.gene69263:intron | 40.0% | |
| TGGTACCCAACAAAAATGCA+AGG | - | chr3.2:63820927-63820946 | MS.gene69263:CDS | 40.0% | |
| TTAATCCGGTCCTTGACATT+TGG | - | chr3.2:63822503-63822522 | MS.gene69263:intron | 40.0% | |
| TTGAAGAGCTGCTCAAAATG+AGG | + | chr3.2:63822276-63822295 | None:intergenic | 40.0% | |
| ! | AACATGATTTGTGATAGGCC+TGG | + | chr3.2:63823868-63823887 | None:intergenic | 40.0% |
| ! | ACGCAGCAGATTCTACATTT+TGG | + | chr3.2:63823699-63823718 | None:intergenic | 40.0% |
| ! | CAAGAAAAGTGTGCTACATG+TGG | - | chr3.2:63822608-63822627 | MS.gene69263:intron | 40.0% |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr3.2:63820936-63820955 | None:intergenic | 40.0% |
| ! | CATAAAGCTTTTTGCTGGGT+TGG | - | chr3.2:63823304-63823323 | MS.gene69263:intron | 40.0% |
| ! | GTTTGGTTCAAGTTAGCGAA+AGG | - | chr3.2:63823565-63823584 | MS.gene69263:intron | 40.0% |
| ! | TCATTTTGAGCAGCTCTTCA+AGG | - | chr3.2:63822275-63822294 | MS.gene69263:intron | 40.0% |
| ! | TGTTTCAAGTGTTCACATGG+TGG | - | chr3.2:63823884-63823903 | MS.gene69263:intron | 40.0% |
| ! | TTAGTGCGACCTTTTGCTTT+TGG | - | chr3.2:63822929-63822948 | MS.gene69263:intron | 40.0% |
| ! | TTGTTGAAAGCGTGTTGGAT+CGG | - | chr3.2:63821343-63821362 | MS.gene69263:intron | 40.0% |
| !! | AAACCAAGGCATTCTAGTTC+AGG | + | chr3.2:63823789-63823808 | None:intergenic | 40.0% |
| !! | AACCAAGGCATTCTAGTTCA+GGG | + | chr3.2:63823788-63823807 | None:intergenic | 40.0% |
| !! | CTAGTTTTTGATCACTGGGA+AGG | - | chr3.2:63823480-63823499 | MS.gene69263:intron | 40.0% |
| !! | TAGTGCGACCTTTTGCTTTT+GGG | - | chr3.2:63822930-63822949 | MS.gene69263:intron | 40.0% |
| !! | TTTGCTGGGTTGGTTTAAAC+TGG | - | chr3.2:63823314-63823333 | MS.gene69263:intron | 40.0% |
| AACTAGCCCCGGTTCAAATT+TGG | + | chr3.2:63823529-63823548 | None:intergenic | 45.0% | |
| ACATACCATACAGCCAGAGA+AGG | + | chr3.2:63822803-63822822 | None:intergenic | 45.0% | |
| ATGCACTTCAGGTCCTGTAT+TGG | + | chr3.2:63823365-63823384 | None:intergenic | 45.0% | |
| CTCTCCAGCCAAATTTGAAC+CGG | - | chr3.2:63823518-63823537 | MS.gene69263:intron | 45.0% | |
| GTTGATCAGCTTTCTGCTGA+TGG | - | chr3.2:63820973-63820992 | MS.gene69263:CDS | 45.0% | |
| TACCCTGAACTAGAATGCCT+TGG | - | chr3.2:63823783-63823802 | MS.gene69263:intron | 45.0% | |
| TCAGCAGAAAGCTGATCAAC+GGG | + | chr3.2:63820973-63820992 | None:intergenic | 45.0% | |
| TCTCCAGCCAAATTTGAACC+GGG | - | chr3.2:63823519-63823538 | MS.gene69263:intron | 45.0% | |
| TGCACTAGTGAGTGACTGTA+TGG | - | chr3.2:63821390-63821409 | MS.gene69263:intron | 45.0% | |
| TGCAGCGTCAATCATAAGCA+AGG | + | chr3.2:63821168-63821187 | None:intergenic | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr3.2:63821018-63821037 | MS.gene69263:CDS | 45.0% | |
| ! | ACTAGAGTATCCTCCTTCTC+TGG | - | chr3.2:63822787-63822806 | MS.gene69263:intron | 45.0% |
| ! | TTTTCCTAGAGAACTAGCCC+CGG | + | chr3.2:63823540-63823559 | None:intergenic | 45.0% |
| !! | AGTGCGACCTTTTGCTTTTG+GGG | - | chr3.2:63822931-63822950 | MS.gene69263:intron | 45.0% |
| !! | ATAAATTAGTTAATAATATT+TGG | - | chr3.2:63822678-63822697 | MS.gene69263:CDS | 5.0% |
| ACAGCTGCAAAGGTAGCTGA+CGG | - | chr3.2:63822429-63822448 | MS.gene69263:intron | 50.0% | |
| ATCCTCCTTCTCTGGCTGTA+TGG | - | chr3.2:63822795-63822814 | MS.gene69263:intron | 50.0% | |
| CAGCAGAAAGCTGATCAACG+GGG | + | chr3.2:63820972-63820991 | None:intergenic | 50.0% | |
| CAGGTGGTCTAGCCTCTTAT+TGG | + | chr3.2:63823653-63823672 | None:intergenic | 50.0% | |
| CCAGTCTGCACTCCAATAAG+AGG | - | chr3.2:63823638-63823657 | MS.gene69263:intron | 50.0% | |
| CCTCTTATTGGAGTGCAGAC+TGG | + | chr3.2:63823641-63823660 | None:intergenic | 50.0% | |
| CTCCAGCCAAATTTGAACCG+GGG | - | chr3.2:63823520-63823539 | MS.gene69263:intron | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3.2:63823847-63823866 | MS.gene69263:intron | 50.0% | |
| TACCATACAGCCAGAGAAGG+AGG | + | chr3.2:63822800-63822819 | None:intergenic | 50.0% | |
| TGAACGCCCCCAAAAGCAAA+AGG | + | chr3.2:63822941-63822960 | None:intergenic | 50.0% | |
| ! | AAAGCTGCGGGCATGTTTTC+TGG | - | chr3.2:63822581-63822600 | MS.gene69263:intron | 50.0% |
| ! | AAGCTGCGGGCATGTTTTCT+GGG | - | chr3.2:63822582-63822601 | MS.gene69263:intron | 50.0% |
| !! | GTGCGACCTTTTGCTTTTGG+GGG | - | chr3.2:63822932-63822951 | MS.gene69263:intron | 50.0% |
| !!! | TTGCTTTTGGGGGCGTTCAT+TGG | - | chr3.2:63822942-63822961 | MS.gene69263:intron | 50.0% |
| AACATGCCCGCAGCTTTGCT+AGG | + | chr3.2:63822578-63822597 | None:intergenic | 55.0% | |
| AAGGACCCCTAGCAAAGCTG+CGG | - | chr3.2:63822568-63822587 | MS.gene69263:intron | 55.0% | |
| ACATGCCCGCAGCTTTGCTA+GGG | + | chr3.2:63822577-63822596 | None:intergenic | 55.0% | |
| AGCCCCGGTTCAAATTTGGC+TGG | + | chr3.2:63823525-63823544 | None:intergenic | 55.0% | |
| CTTTGCTAGGGGTCCTTGTC+TGG | + | chr3.2:63822565-63822584 | None:intergenic | 55.0% | |
| GAGCAGCTCTTCAAGGAGCA+TGG | - | chr3.2:63822282-63822301 | MS.gene69263:intron | 55.0% | |
| TGACGGTACAACTCCTGTGC+TGG | - | chr3.2:63822446-63822465 | MS.gene69263:intron | 55.0% | |
| !! | TGAACCGGGGCTAGTTCTCT+AGG | - | chr3.2:63823533-63823552 | MS.gene69263:intron | 55.0% |
| AGGACCCCTAGCAAAGCTGC+GGG | - | chr3.2:63822569-63822588 | MS.gene69263:intron | 60.0% | |
| CATGCCCGCAGCTTTGCTAG+GGG | + | chr3.2:63822576-63822595 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63820916 | 63824060 | 63820916 | ID=MS.gene69263 |
| chr3.2 | mRNA | 63820916 | 63824060 | 63820916 | ID=MS.gene69263.t1;Parent=MS.gene69263 |
| chr3.2 | exon | 63823926 | 63824060 | 63823926 | ID=MS.gene69263.t1.exon1;Parent=MS.gene69263.t1 |
| chr3.2 | CDS | 63823926 | 63824060 | 63823926 | ID=cds.MS.gene69263.t1;Parent=MS.gene69263.t1 |
| chr3.2 | exon | 63822640 | 63822745 | 63822640 | ID=MS.gene69263.t1.exon2;Parent=MS.gene69263.t1 |
| chr3.2 | CDS | 63822640 | 63822745 | 63822640 | ID=cds.MS.gene69263.t1;Parent=MS.gene69263.t1 |
| chr3.2 | exon | 63822509 | 63822543 | 63822509 | ID=MS.gene69263.t1.exon3;Parent=MS.gene69263.t1 |
| chr3.2 | CDS | 63822509 | 63822543 | 63822509 | ID=cds.MS.gene69263.t1;Parent=MS.gene69263.t1 |
| chr3.2 | exon | 63822321 | 63822410 | 63822321 | ID=MS.gene69263.t1.exon4;Parent=MS.gene69263.t1 |
| chr3.2 | CDS | 63822321 | 63822410 | 63822321 | ID=cds.MS.gene69263.t1;Parent=MS.gene69263.t1 |
| chr3.2 | exon | 63820916 | 63821125 | 63820916 | ID=MS.gene69263.t1.exon5;Parent=MS.gene69263.t1 |
| chr3.2 | CDS | 63820916 | 63821125 | 63820916 | ID=cds.MS.gene69263.t1;Parent=MS.gene69263.t1 |
| Gene Sequence |
| Protein sequence |
