Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032012.t1 | XP_003600847.1 | 100 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 8.30E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032012.t1 | Q9M047 | 80.1 | 201 | 28 | 2 | 1 | 191 | 1 | 199 | 8.7e-91 | 334.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032012.t1 | B7FME7 | 100.0 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 6.0e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene032012.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69263 | MS.gene032012 | PPI |
| MS.gene008092 | MS.gene032012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032012.t1 | MTR_3g070050 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.34e-141 | 392 |
| MS.gene032012.t1 | MTR_3g070050 | 98.649 | 148 | 2 | 0 | 44 | 191 | 2 | 149 | 5.89e-106 | 300 |
| MS.gene032012.t1 | MTR_3g070050 | 49.296 | 71 | 36 | 0 | 3 | 73 | 61 | 131 | 7.23e-21 | 84.7 |
| MS.gene032012.t1 | MTR_7g076720 | 62.295 | 183 | 65 | 2 | 1 | 183 | 1 | 179 | 4.67e-85 | 250 |
| MS.gene032012.t1 | MTR_8g031490 | 64.246 | 179 | 58 | 2 | 1 | 179 | 1 | 173 | 3.91e-83 | 245 |
| MS.gene032012.t1 | MTR_8g097300 | 59.563 | 183 | 66 | 1 | 1 | 183 | 1 | 175 | 2.86e-75 | 225 |
| MS.gene032012.t1 | MTR_1g017950 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 2.89e-70 | 212 |
| MS.gene032012.t1 | MTR_4g106800 | 53.591 | 181 | 81 | 2 | 2 | 181 | 3 | 181 | 1.10e-66 | 202 |
| MS.gene032012.t1 | MTR_3g070033 | 100.000 | 69 | 0 | 0 | 123 | 191 | 6 | 74 | 9.18e-45 | 143 |
| MS.gene032012.t1 | MTR_3g070033 | 47.059 | 51 | 27 | 0 | 23 | 73 | 6 | 56 | 5.39e-12 | 59.3 |
| MS.gene032012.t1 | MTR_1g106100 | 43.750 | 112 | 55 | 2 | 59 | 168 | 20 | 125 | 1.85e-24 | 94.0 |
| MS.gene032012.t1 | MTR_1g106100 | 45.455 | 66 | 36 | 0 | 3 | 68 | 60 | 125 | 1.53e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032012.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene032012.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene032012.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene032012.t1 | AT3G55770 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.20e-113 | 320 |
| MS.gene032012.t1 | AT2G39900 | 82.609 | 184 | 29 | 2 | 1 | 183 | 1 | 182 | 5.24e-110 | 313 |
| MS.gene032012.t1 | AT2G39900 | 45.455 | 88 | 48 | 0 | 103 | 190 | 3 | 90 | 5.72e-22 | 89.0 |
| MS.gene032012.t1 | AT3G55770 | 70.642 | 218 | 28 | 2 | 1 | 184 | 1 | 216 | 5.31e-105 | 301 |
| MS.gene032012.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 6.73e-22 | 89.4 |
| MS.gene032012.t1 | AT2G45800 | 64.706 | 187 | 62 | 2 | 1 | 187 | 1 | 183 | 1.59e-85 | 251 |
| MS.gene032012.t1 | AT1G01780 | 61.290 | 186 | 66 | 3 | 1 | 186 | 1 | 180 | 6.07e-83 | 244 |
| MS.gene032012.t1 | AT1G01780 | 49.425 | 87 | 44 | 0 | 3 | 89 | 97 | 183 | 1.74e-23 | 92.8 |
| MS.gene032012.t1 | AT3G61230 | 59.890 | 182 | 69 | 2 | 2 | 183 | 3 | 180 | 3.58e-80 | 238 |
| MS.gene032012.t1 | AT1G10200 | 59.322 | 177 | 68 | 2 | 1 | 175 | 1 | 175 | 2.58e-72 | 217 |
| MS.gene032012.t1 | AT3G55770 | 74.074 | 135 | 32 | 2 | 1 | 135 | 1 | 132 | 4.60e-67 | 202 |
| MS.gene032012.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 2.85e-23 | 90.5 |
| MS.gene032012.t1 | AT3G55770 | 72.388 | 134 | 35 | 1 | 1 | 134 | 1 | 132 | 1.02e-64 | 196 |
| MS.gene032012.t1 | AT3G55770 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 1.72e-23 | 90.9 |
| MS.gene032012.t1 | AT2G45800 | 61.688 | 154 | 54 | 3 | 34 | 187 | 4 | 152 | 9.66e-61 | 187 |
| MS.gene032012.t1 | AT2G45800 | 56.338 | 71 | 31 | 0 | 3 | 73 | 68 | 138 | 2.69e-22 | 89.7 |
| MS.gene032012.t1 | AT1G10200 | 54.135 | 133 | 57 | 2 | 45 | 175 | 3 | 133 | 9.31e-46 | 148 |
| MS.gene032012.t1 | AT1G10200 | 52.778 | 72 | 34 | 0 | 3 | 74 | 61 | 132 | 9.65e-21 | 84.3 |
Find 37 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 3.1:-57420394 | MS.gene032012:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 3.1:+57420418 | None:intergenic |
| GCATAATTTGATGGAGTTAT+AGG | 0.293254 | 3.1:+57417544 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3.1:+57417406 | None:intergenic |
| CTTGAAACATGATTTGTGAT+AGG | 0.385052 | 3.1:+57417585 | None:intergenic |
| GTTGATCAGCTTTCTGCTGA+TGG | 0.406816 | 3.1:-57420450 | MS.gene032012:CDS |
| TCAAATTATGCAGCCCTTGA+GGG | 0.436930 | 3.1:-57417532 | MS.gene032012:CDS |
| TCAAGGGCTGCATAATTTGA+TGG | 0.451254 | 3.1:+57417535 | None:intergenic |
| TCAGCAGAAAGCTGATCAAC+GGG | 0.473853 | 3.1:+57420453 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 3.1:-57420481 | MS.gene032012:CDS |
| GCTTAGCAGCTATTCATCAA+TGG | 0.481021 | 3.1:-57419212 | MS.gene032012:CDS |
| AACATGCCCGCAGCTTTGCT+AGG | 0.502670 | 3.1:+57418880 | None:intergenic |
| TCAAGCAAATTTACCAGCAC+AGG | 0.506130 | 3.1:+57418983 | None:intergenic |
| TGCAATACAAAATGCCCTCA+AGG | 0.513427 | 3.1:+57417518 | None:intergenic |
| ATCAAATTATGCAGCCCTTG+AGG | 0.523435 | 3.1:-57417533 | MS.gene032012:CDS |
| TTAAATCTTACCTTCTCCAA+TGG | 0.527191 | 3.1:+57418811 | None:intergenic |
| TGGCAAAACTGCTTATCCAT+TGG | 0.531481 | 3.1:-57418827 | MS.gene032012:CDS |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3.1:-57417608 | MS.gene032012:intron |
| ACATGCCCGCAGCTTTGCTA+GGG | 0.534302 | 3.1:+57418881 | None:intergenic |
| GAGCAGCTCTTCAAGGAGCA+TGG | 0.538709 | 3.1:-57419160 | MS.gene032012:CDS |
| TTGAAGAGCTGCTCAAAATG+AGG | 0.540372 | 3.1:+57419169 | None:intergenic |
| AGGACCCCTAGCAAAGCTGC+GGG | 0.566248 | 3.1:-57418886 | MS.gene032012:CDS |
| ATCAGCAGAAAGCTGATCAA+CGG | 0.567765 | 3.1:+57420452 | None:intergenic |
| TGACGGTACAACTCCTGTGC+TGG | 0.573159 | 3.1:-57418996 | MS.gene032012:intron |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 3.1:-57420405 | MS.gene032012:CDS |
| AACTGCTTATCCATTGGAGA+AGG | 0.581461 | 3.1:-57418821 | MS.gene032012:intron |
| CATTCAAGATTCTGGAACGG+AGG | 0.593798 | 3.1:+57417414 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+TGG | 0.595518 | 3.1:-57417574 | MS.gene032012:CDS |
| GCAATACAAAATGCCCTCAA+GGG | 0.597362 | 3.1:+57417519 | None:intergenic |
| AAGGACCCCTAGCAAAGCTG+CGG | 0.600940 | 3.1:-57418887 | MS.gene032012:CDS |
| AGCAGCTATTCATCAATGGA+AGG | 0.620240 | 3.1:-57419208 | MS.gene032012:CDS |
| CAAGAAAAGTGTGCTACATG+TGG | 0.644472 | 3.1:-57418847 | MS.gene032012:CDS |
| AACATGATTTGTGATAGGCC+TGG | 0.655676 | 3.1:+57417590 | None:intergenic |
| CAACATTCAAGATTCTGGAA+CGG | 0.669244 | 3.1:+57417411 | None:intergenic |
| TGTTTCAAGTGTTCACATGG+TGG | 0.677869 | 3.1:-57417571 | MS.gene032012:CDS |
| CATGCCCGCAGCTTTGCTAG+GGG | 0.687636 | 3.1:+57418882 | None:intergenic |
| ACAGCTGCAAAGGTAGCTGA+CGG | 0.690921 | 3.1:-57419013 | MS.gene032012:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTGTTCTTTTAATC+CGG | - | chr3.1:57418971-57418990 | MS.gene032012:intron | 15.0% |
| !! | AAAATTATTGCCAATTAAAG+AGG | + | chr3.1:57418884-57418903 | None:intergenic | 20.0% |
| !! | AAACTAAACTTGAAAGATTA+TGG | + | chr3.1:57418154-57418173 | None:intergenic | 20.0% |
| !! | AAGGTAAGATTTAAAAATCT+TGG | - | chr3.1:57419122-57419141 | MS.gene032012:intron | 20.0% |
| !! | ACTAAAGATACTTATTCTTA+TGG | + | chr3.1:57419211-57419230 | None:intergenic | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3.1:57420209-57420228 | None:intergenic | 20.0% |
| !! | ATATTTAGACATATGAAAGT+GGG | - | chr3.1:57417744-57417763 | MS.gene032012:intron | 20.0% |
| !! | ATGACTTCATTATCTTTATT+GGG | - | chr3.1:57419548-57419567 | MS.gene032012:intron | 20.0% |
| !! | ATGCTATAAGTTGTTTATAT+TGG | - | chr3.1:57417985-57418004 | MS.gene032012:intron | 20.0% |
| !! | TATATTTAGACATATGAAAG+TGG | - | chr3.1:57417743-57417762 | MS.gene032012:intron | 20.0% |
| !! | TATGACTTCATTATCTTTAT+TGG | - | chr3.1:57419547-57419566 | MS.gene032012:intron | 20.0% |
| !!! | AAGTTTAGTTTCTCAAATAT+TGG | - | chr3.1:57418163-57418182 | MS.gene032012:intron | 20.0% |
| !!! | CATATTGATGTTAAATGTTT+TGG | + | chr3.1:57419301-57419320 | None:intergenic | 20.0% |
| !!! | CTTCAATTTCATGTTTTTTA+AGG | + | chr3.1:57419651-57419670 | None:intergenic | 20.0% |
| !!! | TAAAGTTTGAATTTTTCACA+AGG | - | chr3.1:57418662-57418681 | MS.gene032012:intron | 20.0% |
| ! | AAACTTGAAAGATTATGGAT+TGG | + | chr3.1:57418149-57418168 | None:intergenic | 25.0% |
| ! | ACGCTTTCAACAATTTAAAT+AGG | + | chr3.1:57417818-57417837 | None:intergenic | 25.0% |
| ! | AGATTAAAAAAAGCTCTCAT+TGG | + | chr3.1:57417696-57417715 | None:intergenic | 25.0% |
| ! | AGCTTATACATAAGTGATTA+TGG | + | chr3.1:57418044-57418063 | None:intergenic | 25.0% |
| ! | ATATATCTCATTCTGAATGT+AGG | - | chr3.1:57420298-57420317 | MS.gene032012:intron | 25.0% |
| ! | CTATTAATATCTCCAATTAC+AGG | - | chr3.1:57419818-57419837 | MS.gene032012:intron | 25.0% |
| ! | GAGAATTTATGAAAATGAGT+TGG | - | chr3.1:57418007-57418026 | MS.gene032012:intron | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3.1:57420208-57420227 | None:intergenic | 25.0% |
| ! | TCAGATATATCTGTTACATA+TGG | - | chr3.1:57419170-57419189 | MS.gene032012:CDS | 25.0% |
| !! | ATAAATTTTGTGAGACTGTT+TGG | + | chr3.1:57418255-57418274 | None:intergenic | 25.0% |
| !! | ATAACATAAAGCTTTTTGCT+GGG | - | chr3.1:57419768-57419787 | MS.gene032012:intron | 25.0% |
| !! | ATATGAAAGTGGGAATTTTA+TGG | - | chr3.1:57417754-57417773 | MS.gene032012:intron | 25.0% |
| !! | ATGTAACATTTTCTCATTTC+AGG | + | chr3.1:57420141-57420160 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGAGACTGTTT+GGG | + | chr3.1:57418254-57418273 | None:intergenic | 25.0% |
| !! | TATGAAAGTGGGAATTTTAT+GGG | - | chr3.1:57417755-57417774 | MS.gene032012:intron | 25.0% |
| !! | TTATGAAAATGAGTTGAAAG+AGG | - | chr3.1:57418013-57418032 | MS.gene032012:intron | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | - | chr3.1:57418612-57418631 | MS.gene032012:intron | 25.0% |
| !!! | AAATCTAGTTTTTGATCACT+GGG | - | chr3.1:57419945-57419964 | MS.gene032012:intron | 25.0% |
| !!! | AATGTAGGTTTTATCATCTT+TGG | + | chr3.1:57419611-57419630 | None:intergenic | 25.0% |
| !!! | GAGCTTTTTTTAATCTAAGT+TGG | - | chr3.1:57417700-57417719 | MS.gene032012:intron | 25.0% |
| !!! | TAAATCTAGTTTTTGATCAC+TGG | - | chr3.1:57419944-57419963 | MS.gene032012:intron | 25.0% |
| AAAAAGAAGACATACGTGAT+TGG | + | chr3.1:57418814-57418833 | None:intergenic | 30.0% | |
| AACCTAGAAAGATTATGGAT+TGG | + | chr3.1:57418301-57418320 | None:intergenic | 30.0% | |
| AAGCTAACCTAGAAAGATTA+TGG | + | chr3.1:57418306-57418325 | None:intergenic | 30.0% | |
| AATTGTTTCATGCTTGCAAT+GGG | + | chr3.1:57419376-57419395 | None:intergenic | 30.0% | |
| CTACATTATGATTCAGTTCA+CGG | - | chr3.1:57419624-57419643 | MS.gene032012:intron | 30.0% | |
| GAATAAACAACTCAACTAAG+TGG | + | chr3.1:57418607-57418626 | None:intergenic | 30.0% | |
| GCAGCAAGTAAAAAAAATGA+AGG | + | chr3.1:57417566-57417585 | None:intergenic | 30.0% | |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3.1:57420383-57420402 | None:intergenic | 30.0% | |
| GCTTAATTGAGCTTATCTAT+TGG | + | chr3.1:57418127-57418146 | None:intergenic | 30.0% | |
| TAAACTGTTTATTCCAGACA+AGG | - | chr3.1:57419018-57419037 | MS.gene032012:intron | 30.0% | |
| TTAAATCTTACCTTCTCCAA+TGG | + | chr3.1:57419116-57419135 | None:intergenic | 30.0% | |
| TTATTACTCTCCTGTACATA+AGG | - | chr3.1:57419230-57419249 | MS.gene032012:intron | 30.0% | |
| TTCAGTAATACCATATGTCA+AGG | + | chr3.1:57418998-57419017 | None:intergenic | 30.0% | |
| ! | ACCAGCAAAGATTTCATTTT+GGG | + | chr3.1:57419746-57419765 | None:intergenic | 30.0% |
| ! | CATAACATAAAGCTTTTTGC+TGG | - | chr3.1:57419767-57419786 | MS.gene032012:intron | 30.0% |
| ! | CTTGAAACATGATTTGTGAT+AGG | + | chr3.1:57420342-57420361 | None:intergenic | 30.0% |
| ! | GGATAAGTGATAACTAGTTT+AGG | + | chr3.1:57420089-57420108 | None:intergenic | 30.0% |
| ! | GTATGTCTTCTTTTTCTTCA+AGG | - | chr3.1:57418819-57418838 | MS.gene032012:intron | 30.0% |
| ! | GTTTTATGATTTTGTGGGTT+GGG | + | chr3.1:57419716-57419735 | None:intergenic | 30.0% |
| ! | TAACATTTTCTCATTTCAGG+CGG | + | chr3.1:57420138-57420157 | None:intergenic | 30.0% |
| ! | TACCAGCAAAGATTTCATTT+TGG | + | chr3.1:57419747-57419766 | None:intergenic | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3.1:57420228-57420247 | MS.gene032012:intron | 30.0% |
| ! | TCATTGGAATTTTACATGGA+TGG | + | chr3.1:57417680-57417699 | None:intergenic | 30.0% |
| ! | TTAAATTGTTGAAAGCGTGT+TGG | - | chr3.1:57417820-57417839 | MS.gene032012:intron | 30.0% |
| !! | ATAAGTTTTGTCAGACTGTT+TGG | + | chr3.1:57418103-57418122 | None:intergenic | 30.0% |
| !! | GTTCGGTTTTATGATTTTGT+GGG | + | chr3.1:57419721-57419740 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTCAGACTGTTT+GGG | + | chr3.1:57418102-57418121 | None:intergenic | 30.0% |
| !! | TGTTCGGTTTTATGATTTTG+TGG | + | chr3.1:57419722-57419741 | None:intergenic | 30.0% |
| !! | TTTTATGATTTTGTGGGTTG+GGG | + | chr3.1:57419715-57419734 | None:intergenic | 30.0% |
| !!! | TTTATTTTGAACAGCTGCAA+AGG | - | chr3.1:57418901-57418920 | MS.gene032012:intron | 30.0% |
| ACACACATGATTGATTGTCA+TGG | + | chr3.1:57418384-57418403 | None:intergenic | 35.0% | |
| AGCCAATCCATAATCTTTCT+AGG | - | chr3.1:57418296-57418315 | MS.gene032012:intron | 35.0% | |
| ATAGCAATGACAGTGTAAGA+GGG | + | chr3.1:57419465-57419484 | None:intergenic | 35.0% | |
| ATATAGCGACAAGAAAACCA+AGG | + | chr3.1:57420272-57420291 | None:intergenic | 35.0% | |
| ATTGTTTCATGCTTGCAATG+GGG | + | chr3.1:57419375-57419394 | None:intergenic | 35.0% | |
| CAATCAGATGCCTCTTTAAT+TGG | - | chr3.1:57418871-57418890 | MS.gene032012:CDS | 35.0% | |
| CAATCATGTGTGTGACTTTA+AGG | - | chr3.1:57418391-57418410 | MS.gene032012:intron | 35.0% | |
| CAATTGTTTCATGCTTGCAA+TGG | + | chr3.1:57419377-57419396 | None:intergenic | 35.0% | |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3.1:57420436-57420455 | None:intergenic | 35.0% | |
| CGTGAACTGAATCATAATGT+AGG | + | chr3.1:57419626-57419645 | None:intergenic | 35.0% | |
| GTCATATCAAAGTCTACTTG+TGG | + | chr3.1:57419533-57419552 | None:intergenic | 35.0% | |
| TAAAATTGCGAGCACAAAGA+AGG | - | chr3.1:57419328-57419347 | MS.gene032012:intron | 35.0% | |
| TAATACCATATGTCAAGGAC+CGG | + | chr3.1:57418993-57419012 | None:intergenic | 35.0% | |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr3.1:57417530-57417549 | MS.gene032012:CDS | 35.0% | |
| TCCTAATCAATATGCACTTC+AGG | + | chr3.1:57419845-57419864 | None:intergenic | 35.0% | |
| TTCGGGCAATTATTGACAAA+TGG | + | chr3.1:57420191-57420210 | None:intergenic | 35.0% | |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr3.1:57417436-57417455 | None:intergenic | 35.0% |
| ! | ACCTGAAGTGCATATTGATT+AGG | - | chr3.1:57419841-57419860 | MS.gene032012:intron | 35.0% |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr3.1:57417509-57417528 | None:intergenic | 35.0% |
| ! | CCAGCAAAGATTTCATTTTG+GGG | + | chr3.1:57419745-57419764 | None:intergenic | 35.0% |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3.1:57420433-57420452 | MS.gene032012:CDS | 35.0% |
| ! | GCTCTCATTGGAATTTTACA+TGG | + | chr3.1:57417684-57417703 | None:intergenic | 35.0% |
| ! | TAGTTTTTGATCACTGGGAA+GGG | - | chr3.1:57419950-57419969 | MS.gene032012:intron | 35.0% |
| ! | TCATGTTTCAAGTGTTCACA+TGG | - | chr3.1:57420350-57420369 | MS.gene032012:intron | 35.0% |
| ! | TCTCTAGGAAAACAGTTGTT+TGG | - | chr3.1:57420017-57420036 | MS.gene032012:intron | 35.0% |
| ! | TTGGAATTTTACATGGATGG+TGG | + | chr3.1:57417677-57417696 | None:intergenic | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3.1:57420441-57420460 | MS.gene032012:CDS | 35.0% |
| !! | GGTTTTATGATTTTGTGGGT+TGG | + | chr3.1:57419717-57419736 | None:intergenic | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3.1:57420440-57420459 | MS.gene032012:CDS | 35.0% |
| !!! | AGATTTCATTTTGGGGTGTT+CGG | + | chr3.1:57419738-57419757 | None:intergenic | 35.0% |
| AACTGCTTATCCATTGGAGA+AGG | - | chr3.1:57419103-57419122 | MS.gene032012:intron | 40.0% | |
| AGCAGCTATTCATCAATGGA+AGG | - | chr3.1:57418716-57418735 | MS.gene032012:intron | 40.0% | |
| ATCAAATTATGCAGCCCTTG+AGG | - | chr3.1:57420391-57420410 | MS.gene032012:intron | 40.0% | |
| ATCAGCAGAAAGCTGATCAA+CGG | + | chr3.1:57417475-57417494 | None:intergenic | 40.0% | |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr3.1:57417443-57417462 | MS.gene032012:CDS | 40.0% | |
| CATAGCAATGACAGTGTAAG+AGG | + | chr3.1:57419466-57419485 | None:intergenic | 40.0% | |
| CCCCAAAATGAAATCTTTGC+TGG | - | chr3.1:57419742-57419761 | MS.gene032012:intron | 40.0% | |
| CTCTAGTCTACCTTATGTAC+AGG | + | chr3.1:57419243-57419262 | None:intergenic | 40.0% | |
| GCAATACAAAATGCCCTCAA+GGG | + | chr3.1:57420408-57420427 | None:intergenic | 40.0% | |
| GCTTAGCAGCTATTCATCAA+TGG | - | chr3.1:57418712-57418731 | MS.gene032012:intron | 40.0% | |
| GGCAAAGTTGTACTTCATAC+AGG | + | chr3.1:57419354-57419373 | None:intergenic | 40.0% | |
| TCAAATTATGCAGCCCTTGA+GGG | - | chr3.1:57420392-57420411 | MS.gene032012:intron | 40.0% | |
| TCAAGCAAATTTACCAGCAC+AGG | + | chr3.1:57418944-57418963 | None:intergenic | 40.0% | |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3.1:57420392-57420411 | None:intergenic | 40.0% | |
| TGCAATACAAAATGCCCTCA+AGG | + | chr3.1:57420409-57420428 | None:intergenic | 40.0% | |
| TGGCAAAACTGCTTATCCAT+TGG | - | chr3.1:57419097-57419116 | MS.gene032012:intron | 40.0% | |
| TGGTACCCAACAAAAATGCA+AGG | - | chr3.1:57417428-57417447 | MS.gene032012:CDS | 40.0% | |
| TTAATCCGGTCCTTGACATA+TGG | - | chr3.1:57418985-57419004 | MS.gene032012:intron | 40.0% | |
| TTGAAGAGCTGCTCAAAATG+AGG | + | chr3.1:57418758-57418777 | None:intergenic | 40.0% | |
| ! | AACATGATTTGTGATAGGCC+TGG | + | chr3.1:57420337-57420356 | None:intergenic | 40.0% |
| ! | ACGCAGCAGATTCTACATTT+TGG | + | chr3.1:57420168-57420187 | None:intergenic | 40.0% |
| ! | CAAGAAAAGTGTGCTACATG+TGG | - | chr3.1:57419077-57419096 | MS.gene032012:intron | 40.0% |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr3.1:57417437-57417456 | None:intergenic | 40.0% |
| ! | CATAAAGCTTTTTGCTGGGT+TGG | - | chr3.1:57419772-57419791 | MS.gene032012:intron | 40.0% |
| ! | GTTTGGTTCAAGTTAGCGAA+AGG | - | chr3.1:57420034-57420053 | MS.gene032012:intron | 40.0% |
| ! | TCATTTTGAGCAGCTCTTCA+AGG | - | chr3.1:57418757-57418776 | MS.gene032012:intron | 40.0% |
| ! | TGTTTCAAGTGTTCACATGG+TGG | - | chr3.1:57420353-57420372 | MS.gene032012:intron | 40.0% |
| ! | TTAGTGCGACCTTTTGCTTT+TGG | - | chr3.1:57419398-57419417 | MS.gene032012:intron | 40.0% |
| ! | TTGTTGAAAGCGTGTTGGAT+CGG | - | chr3.1:57417825-57417844 | MS.gene032012:intron | 40.0% |
| !! | AAACCAAGGCATTCTAGTTC+AGG | + | chr3.1:57420258-57420277 | None:intergenic | 40.0% |
| !! | AACCAAGGCATTCTAGTTCA+GGG | + | chr3.1:57420257-57420276 | None:intergenic | 40.0% |
| !! | CTAGTTTTTGATCACTGGGA+AGG | - | chr3.1:57419949-57419968 | MS.gene032012:intron | 40.0% |
| !! | TAGTGCGACCTTTTGCTTTT+GGG | - | chr3.1:57419399-57419418 | MS.gene032012:intron | 40.0% |
| !! | TTTGCTGGGTTGGTTTAAAC+TGG | - | chr3.1:57419782-57419801 | MS.gene032012:intron | 40.0% |
| AACTAGCCCCGGTTCAAATT+TGG | + | chr3.1:57419998-57420017 | None:intergenic | 45.0% | |
| ACATACCATACAGCCAGAGA+AGG | + | chr3.1:57419272-57419291 | None:intergenic | 45.0% | |
| CTCTCCAGCCAAATTTGAAC+CGG | - | chr3.1:57419987-57420006 | MS.gene032012:intron | 45.0% | |
| GTTGATCAGCTTTCTGCTGA+TGG | - | chr3.1:57417474-57417493 | MS.gene032012:CDS | 45.0% | |
| TACCCTGAACTAGAATGCCT+TGG | - | chr3.1:57420252-57420271 | MS.gene032012:intron | 45.0% | |
| TCAGCAGAAAGCTGATCAAC+GGG | + | chr3.1:57417474-57417493 | None:intergenic | 45.0% | |
| TCTCCAGCCAAATTTGAACC+GGG | - | chr3.1:57419988-57420007 | MS.gene032012:intron | 45.0% | |
| TGCACTAGTGAGTGACTGTA+TGG | - | chr3.1:57417872-57417891 | MS.gene032012:intron | 45.0% | |
| TGCACTTCAGGTCCTGTAAT+TGG | + | chr3.1:57419833-57419852 | None:intergenic | 45.0% | |
| TGCAGCGTCAATCATAAGCA+AGG | + | chr3.1:57417650-57417669 | None:intergenic | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr3.1:57417519-57417538 | MS.gene032012:CDS | 45.0% | |
| ! | ACTAGAGTATCCTCCTTCTC+TGG | - | chr3.1:57419256-57419275 | MS.gene032012:intron | 45.0% |
| ! | TTTTCCTAGAGAACTAGCCC+CGG | + | chr3.1:57420009-57420028 | None:intergenic | 45.0% |
| !! | AGTGCGACCTTTTGCTTTTG+GGG | - | chr3.1:57419400-57419419 | MS.gene032012:intron | 45.0% |
| !! | ATAAATTAGTTAATAATATT+TGG | - | chr3.1:57419147-57419166 | MS.gene032012:CDS | 5.0% |
| ACAGCTGCAAAGGTAGCTGA+CGG | - | chr3.1:57418911-57418930 | MS.gene032012:intron | 50.0% | |
| ATCCTCCTTCTCTGGCTGTA+TGG | - | chr3.1:57419264-57419283 | MS.gene032012:intron | 50.0% | |
| CCAGTCTGCACTCCAATAAG+AGG | - | chr3.1:57420107-57420126 | MS.gene032012:intron | 50.0% | |
| CCTCTTATTGGAGTGCAGAC+TGG | + | chr3.1:57420110-57420129 | None:intergenic | 50.0% | |
| CTCCAGCCAAATTTGAACCG+GGG | - | chr3.1:57419989-57420008 | MS.gene032012:intron | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3.1:57420316-57420335 | MS.gene032012:intron | 50.0% | |
| TACCATACAGCCAGAGAAGG+AGG | + | chr3.1:57419269-57419288 | None:intergenic | 50.0% | |
| TGAACGCCCCCAAAAGCAAA+AGG | + | chr3.1:57419410-57419429 | None:intergenic | 50.0% | |
| ! | AAAGCTGCGGGCATGTTTTC+TGG | - | chr3.1:57419050-57419069 | MS.gene032012:intron | 50.0% |
| ! | AAGCTGCGGGCATGTTTTCT+GGG | - | chr3.1:57419051-57419070 | MS.gene032012:intron | 50.0% |
| !! | GTGCGACCTTTTGCTTTTGG+GGG | - | chr3.1:57419401-57419420 | MS.gene032012:intron | 50.0% |
| !!! | TTGCTTTTGGGGGCGTTCAT+TGG | - | chr3.1:57419411-57419430 | MS.gene032012:intron | 50.0% |
| AACATGCCCGCAGCTTTGCT+AGG | + | chr3.1:57419047-57419066 | None:intergenic | 55.0% | |
| AAGGACCCCTAGCAAAGCTG+CGG | - | chr3.1:57419037-57419056 | MS.gene032012:intron | 55.0% | |
| ACATGCCCGCAGCTTTGCTA+GGG | + | chr3.1:57419046-57419065 | None:intergenic | 55.0% | |
| AGCCCCGGTTCAAATTTGGC+TGG | + | chr3.1:57419994-57420013 | None:intergenic | 55.0% | |
| CAGGCGGTCTAGCCTCTTAT+TGG | + | chr3.1:57420122-57420141 | None:intergenic | 55.0% | |
| CTTTGCTAGGGGTCCTTGTC+TGG | + | chr3.1:57419034-57419053 | None:intergenic | 55.0% | |
| GAGCAGCTCTTCAAGGAGCA+TGG | - | chr3.1:57418764-57418783 | MS.gene032012:intron | 55.0% | |
| TGACGGTACAACTCCTGTGC+TGG | - | chr3.1:57418928-57418947 | MS.gene032012:intron | 55.0% | |
| !! | TGAACCGGGGCTAGTTCTCT+AGG | - | chr3.1:57420002-57420021 | MS.gene032012:intron | 55.0% |
| AGGACCCCTAGCAAAGCTGC+GGG | - | chr3.1:57419038-57419057 | MS.gene032012:intron | 60.0% | |
| CATGCCCGCAGCTTTGCTAG+GGG | + | chr3.1:57419045-57419064 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 57417417 | 57420529 | 57417417 | ID=MS.gene032012 |
| chr3.1 | mRNA | 57417417 | 57420529 | 57417417 | ID=MS.gene032012.t1;Parent=MS.gene032012 |
| chr3.1 | exon | 57420395 | 57420529 | 57420395 | ID=MS.gene032012.t1.exon1;Parent=MS.gene032012.t1 |
| chr3.1 | CDS | 57420395 | 57420529 | 57420395 | ID=cds.MS.gene032012.t1;Parent=MS.gene032012.t1 |
| chr3.1 | exon | 57419128 | 57419233 | 57419128 | ID=MS.gene032012.t1.exon2;Parent=MS.gene032012.t1 |
| chr3.1 | CDS | 57419128 | 57419233 | 57419128 | ID=cds.MS.gene032012.t1;Parent=MS.gene032012.t1 |
| chr3.1 | exon | 57418997 | 57419031 | 57418997 | ID=MS.gene032012.t1.exon3;Parent=MS.gene032012.t1 |
| chr3.1 | CDS | 57418997 | 57419031 | 57418997 | ID=cds.MS.gene032012.t1;Parent=MS.gene032012.t1 |
| chr3.1 | exon | 57418822 | 57418911 | 57418822 | ID=MS.gene032012.t1.exon4;Parent=MS.gene032012.t1 |
| chr3.1 | CDS | 57418822 | 57418911 | 57418822 | ID=cds.MS.gene032012.t1;Parent=MS.gene032012.t1 |
| chr3.1 | exon | 57417417 | 57417626 | 57417417 | ID=MS.gene032012.t1.exon5;Parent=MS.gene032012.t1 |
| chr3.1 | CDS | 57417417 | 57417626 | 57417417 | ID=cds.MS.gene032012.t1;Parent=MS.gene032012.t1 |
| Gene Sequence |
| Protein sequence |
